Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662220 | AES89076.1 | 92.708 | 96 | 5 | 1 | 1 | 96 | 1 | 94 | 1.82e-57 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026780 | Msa0662220 | 0.845711 | 3.424583e-59 | -8.615850e-47 |
| Msa0091730 | Msa0662220 | 0.853865 | 1.801503e-61 | -8.615850e-47 |
| Msa0092480 | Msa0662220 | -0.803343 | 3.648328e-49 | -8.615850e-47 |
| Msa0604290 | Msa0662220 | 0.810450 | 1.145747e-50 | -8.615850e-47 |
| Msa0610550 | Msa0662220 | 0.827684 | 1.365719e-54 | -8.615850e-47 |
| Msa0622790 | Msa0662220 | 0.807083 | 6.010251e-50 | -8.615850e-47 |
| Msa0626920 | Msa0662220 | 0.803506 | 3.374726e-49 | -8.615850e-47 |
| Msa0646020 | Msa0662220 | 0.988933 | 5.289916e-176 | -8.615850e-47 |
| Msa0646420 | Msa0662220 | 0.995953 | 1.025453e-221 | -8.615850e-47 |
| Msa0662220 | Msa0671210 | 0.800782 | 1.225994e-48 | -8.615850e-47 |
| Msa0662220 | Msa0686030 | 0.917026 | 8.755690e-86 | -8.615850e-47 |
| Msa0662220 | Msa0694140 | 0.814305 | 1.648877e-51 | -8.615850e-47 |
| Msa0662220 | Msa0776560 | 0.832222 | 1.068992e-55 | -8.615850e-47 |
| Msa0662220 | Msa0800480 | 0.806053 | 9.913067e-50 | -8.615850e-47 |
| Msa0662220 | Msa0878220 | 0.816282 | 5.993907e-52 | -8.615850e-47 |
| Msa0662220 | Msa0943970 | 0.809667 | 1.689864e-50 | -8.615850e-47 |
| Msa0662220 | Msa0944020 | 0.849304 | 3.524736e-60 | -8.615850e-47 |
| Msa0662220 | Msa0982190 | 0.801770 | 7.698554e-49 | -8.615850e-47 |
| Msa0662220 | Msa0992510 | 0.830645 | 2.614016e-55 | -8.615850e-47 |
| Msa0662220 | Msa1175350 | 0.808002 | 3.835850e-50 | -8.615850e-47 |
| Msa0662220 | Msa1184230 | 0.840139 | 1.040795e-57 | -8.615850e-47 |
| Msa0662220 | Msa1190100 | -0.819310 | 1.242259e-52 | -8.615850e-47 |
| Msa0662220 | Msa1192140 | -0.808061 | 3.726149e-50 | -8.615850e-47 |
| Msa0662220 | Msa1228040 | 0.827017 | 1.973457e-54 | -8.615850e-47 |
| Msa0662220 | Msa1258030 | -0.831108 | 2.012001e-55 | -8.615850e-47 |
| Msa0662220 | Msa1265520 | -0.805291 | 1.432838e-49 | -8.615850e-47 |
| Msa0662220 | Msa1271130 | 0.805964 | 1.035191e-49 | -8.615850e-47 |
| Msa0662220 | Msa1341060 | 0.802887 | 4.531971e-49 | -8.615850e-47 |
| Msa0662220 | Msa1357560 | 0.844628 | 6.718440e-59 | -8.615850e-47 |
| Msa0662220 | Msa1364350 | -0.805031 | 1.624213e-49 | -8.615850e-47 |
| Msa0662220 | Msa1392980 | 0.849789 | 2.580337e-60 | -8.615850e-47 |
| Msa0120880 | Msa0662220 | 0.804483 | 2.113558e-49 | -8.615850e-47 |
| Msa0122530 | Msa0662220 | 0.877910 | 4.300593e-69 | -8.615850e-47 |
| Msa0131270 | Msa0662220 | 0.808936 | 2.423452e-50 | -8.615850e-47 |
| Msa0163510 | Msa0662220 | 0.805027 | 1.627172e-49 | -8.615850e-47 |
| Msa0186540 | Msa0662220 | 0.843929 | 1.035285e-58 | -8.615850e-47 |
| Msa0194920 | Msa0662220 | 0.812050 | 5.151015e-51 | -8.615850e-47 |
| Msa0204960 | Msa0662220 | 0.825896 | 3.649626e-54 | -8.615850e-47 |
| Msa0215990 | Msa0662220 | 0.862796 | 3.932800e-64 | -8.615850e-47 |
| Msa0217670 | Msa0662220 | 0.846853 | 1.672991e-59 | -8.615850e-47 |
| Msa0237300 | Msa0662220 | 0.807776 | 4.284975e-50 | -8.615850e-47 |
| Msa0367540 | Msa0662220 | -0.812043 | 5.170592e-51 | -8.615850e-47 |
| Msa0374220 | Msa0662220 | 0.834544 | 2.819320e-56 | -8.615850e-47 |
| Msa0377820 | Msa0662220 | 0.832786 | 7.749015e-56 | -8.615850e-47 |
| Msa0385500 | Msa0662220 | 0.832915 | 7.197281e-56 | -8.615850e-47 |
| Msa0385740 | Msa0662220 | 0.833105 | 6.456821e-56 | -8.615850e-47 |
| Msa0426580 | Msa0662220 | 0.845705 | 3.436733e-59 | -8.615850e-47 |
| Msa0431980 | Msa0662220 | 0.806494 | 8.006829e-50 | -8.615850e-47 |
| Msa0439960 | Msa0662220 | 0.820115 | 8.135289e-53 | -8.615850e-47 |
| Msa0469890 | Msa0662220 | 0.837036 | 6.586898e-57 | -8.615850e-47 |
| Msa0472930 | Msa0662220 | 0.832086 | 1.155097e-55 | -8.615850e-47 |
| Msa0256140 | Msa0662220 | 0.861826 | 7.810179e-64 | -8.615850e-47 |
| Msa0257490 | Msa0662220 | 0.807025 | 6.182377e-50 | -8.615850e-47 |
| Msa0259680 | Msa0662220 | 0.803242 | 3.827896e-49 | -8.615850e-47 |
| Msa0274720 | Msa0662220 | 0.813485 | 2.499164e-51 | -8.615850e-47 |
| Msa0296790 | Msa0662220 | 0.830919 | 2.238757e-55 | -8.615850e-47 |
| Msa0304730 | Msa0662220 | 0.804708 | 1.897689e-49 | -8.615850e-47 |
| Msa0315520 | Msa0662220 | 0.811977 | 5.345057e-51 | -8.615850e-47 |
| Msa0336450 | Msa0662220 | 0.821201 | 4.578999e-53 | -8.615850e-47 |
| Msa0336540 | Msa0662220 | 0.806510 | 7.943394e-50 | -8.615850e-47 |
| Msa0341480 | Msa0662220 | 0.814096 | 1.833255e-51 | -8.615850e-47 |
| Msa0343500 | Msa0662220 | 0.805801 | 1.120232e-49 | -8.615850e-47 |
| Msa0515340 | Msa0662220 | 0.837702 | 4.446687e-57 | -8.615850e-47 |
| Msa0517590 | Msa0662220 | 0.831368 | 1.737165e-55 | -8.615850e-47 |
| Msa0527540 | Msa0662220 | 0.807797 | 4.240303e-50 | -8.615850e-47 |
| Msa0542560 | Msa0662220 | 0.812224 | 4.721916e-51 | -8.615850e-47 |
| Msa0549950 | Msa0662220 | 0.993635 | 3.996227e-201 | -8.615850e-47 |
| Msa0566940 | Msa0662220 | -0.819531 | 1.105780e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662220 | MtrunA17_Chr4g0034761 | 92.708 | 96 | 5 | 1 | 1 | 96 | 11 | 104 | 2.09e-61 | 182 |
| Msa0662220 | MtrunA17_Chr5g0446661 | 60.215 | 93 | 30 | 2 | 1 | 87 | 1 | 92 | 1.01e-25 | 91.7 |
| Msa0662220 | MtrunA17_Chr3g0078771 | 61.538 | 78 | 24 | 1 | 1 | 72 | 1 | 78 | 2.44e-22 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662220 | AT1G49310.1 | 42.254 | 71 | 37 | 2 | 8 | 74 | 12 | 82 | 7.49e-13 | 58.9 |
Find 29 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTTCTTCTTCTGCTTCT+TGG | 0.153872 | 4_3:+74167265 | None:intergenic |
| TTAATATCTTATATGTTATA+TGG | 0.245081 | 4_3:-74167175 | Msa0662220:three_prime_UTR |
| GAAAAGACTTGGGAGATTAT+TGG | 0.261061 | 4_3:-74167421 | Msa0662220:CDS |
| AATTAGATTTGTTAGTTTGA+TGG | 0.285742 | 4_3:+74167673 | None:intergenic |
| CTCCCCAGATGTATTGTGTT+TGG | 0.312718 | 4_3:-74166931 | Msa0662220:three_prime_UTR |
| ACAAGTTCTTTGATTGCTTC+AGG | 0.324229 | 4_3:+74167371 | None:intergenic |
| TTGTTGGCACCAGTTGAAAT+TGG | 0.331468 | 4_3:-74167765 | None:intergenic |
| AAATACATCTATAGATAAAA+AGG | 0.351346 | 4_3:+74167073 | None:intergenic |
| AACTCTGAACAAGAGCTTCA+TGG | 0.354626 | 4_3:-74167227 | Msa0662220:CDS |
| AATACCAAACACAATACATC+TGG | 0.373946 | 4_3:+74166927 | None:intergenic |
| GATACATCAATCAAATCTAT+TGG | 0.418852 | 4_3:+74166995 | None:intergenic |
| CTCTTATGCAAGAAAAGACT+TGG | 0.442343 | 4_3:-74167432 | Msa0662220:CDS |
| GAGTATGAGAGAAGCAAAGA+TGG | 0.451907 | 4_3:+74167616 | None:intergenic |
| GATTTGTTAGTTTGATGGCT+AGG | 0.457950 | 4_3:+74167678 | None:intergenic |
| TCTTTGATTGCTTCAGGCAT+AGG | 0.472850 | 4_3:+74167377 | None:intergenic |
| ACGGTTGTACCAATTTCAAC+TGG | 0.472939 | 4_3:+74167756 | None:intergenic |
| AGTCAAAAGACAGTGAAACT+TGG | 0.478801 | 4_3:-74166897 | Msa0662220:three_prime_UTR |
| GTGTGATATAATATGACATT+AGG | 0.480243 | 4_3:+74167299 | None:intergenic |
| TGATTGCTTCAGGCATAGGT+TGG | 0.514568 | 4_3:+74167381 | None:intergenic |
| TGGTACAACCGTGTATAAAG+TGG | 0.539054 | 4_3:-74167745 | Msa0662220:five_prime_UTR |
| AGAACTTGTTCAAAATCAAG+AGG | 0.539159 | 4_3:-74167357 | Msa0662220:CDS |
| TTTGATTGATGTATCTAGTG+TGG | 0.552142 | 4_3:-74166987 | Msa0662220:three_prime_UTR |
| ATACCAAACACAATACATCT+GGG | 0.600413 | 4_3:+74166928 | None:intergenic |
| AAAAGACAGTGAAACTTGGA+TGG | 0.605833 | 4_3:-74166893 | Msa0662220:three_prime_UTR |
| TCTTATGCAAGAAAAGACTT+GGG | 0.611202 | 4_3:-74167431 | Msa0662220:CDS |
| TAAAAGTCCACATCTTAGCA+AGG | 0.615141 | 4_3:-74167651 | Msa0662220:five_prime_UTR |
| GGTACAACCGTGTATAAAGT+GGG | 0.640534 | 4_3:-74167744 | Msa0662220:five_prime_UTR |
| AAAGGGGCCCACTTTATACA+CGG | 0.655601 | 4_3:+74167737 | None:intergenic |
| TACCAAACACAATACATCTG+GGG | 0.678240 | 4_3:+74166929 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATATCTTATATGTTATA+TGG | - | chr4_3:74167462-74167481 | Msa0662220:intron | 10.0% |
| !! | TTAATATCTTATATGTTATA+TGG | - | chr4_3:74167462-74167481 | Msa0662220:intron | 10.0% |
| !! | ACAATATAGTATAAATTGAT+TGG | + | chr4_3:74167140-74167159 | None:intergenic | 15.0% |
| !!! | AATTTTCTTTGTACTAAAAT+AGG | - | chr4_3:74167172-74167191 | Msa0662220:three_prime_UTR | 15.0% |
| !!! | TATTTAAGGTTTATTTTGTA+GGG | - | chr4_3:74167497-74167516 | Msa0662220:intron | 15.0% |
| !! | AAATACATCTATAGATAAAA+AGG | + | chr4_3:74167567-74167586 | None:intergenic | 15.0% |
| !!! | TATCTATAGATGTATTTTTA+TGG | - | chr4_3:74167570-74167589 | Msa0662220:intron | 15.0% |
| !! | ACAATATAGTATAAATTGAT+TGG | + | chr4_3:74167140-74167159 | None:intergenic | 15.0% |
| !!! | AATTTTCTTTGTACTAAAAT+AGG | - | chr4_3:74167172-74167191 | Msa0662220:three_prime_UTR | 15.0% |
| !!! | TATTTAAGGTTTATTTTGTA+GGG | - | chr4_3:74167497-74167516 | Msa0662220:intron | 15.0% |
| !! | AAATACATCTATAGATAAAA+AGG | + | chr4_3:74167567-74167586 | None:intergenic | 15.0% |
| !!! | TATCTATAGATGTATTTTTA+TGG | - | chr4_3:74167570-74167589 | Msa0662220:intron | 15.0% |
| !!! | AATTAGATTTGTTAGTTTGA+TGG | + | chr4_3:74166967-74166986 | None:intergenic | 20.0% |
| !! | TTAGTACAAAGAAAATTGAA+AGG | + | chr4_3:74167169-74167188 | None:intergenic | 20.0% |
| !! | GGAAAAAAGATTAGTATTTA+AGG | - | chr4_3:74167483-74167502 | Msa0662220:intron | 20.0% |
| !!! | GTATTTAAGGTTTATTTTGT+AGG | - | chr4_3:74167496-74167515 | Msa0662220:intron | 20.0% |
| !!! | TAAAGTTGTATTTTTGTTGA+TGG | - | chr4_3:74167535-74167554 | Msa0662220:intron | 20.0% |
| !!! | AATTAGATTTGTTAGTTTGA+TGG | + | chr4_3:74166967-74166986 | None:intergenic | 20.0% |
| !! | TTAGTACAAAGAAAATTGAA+AGG | + | chr4_3:74167169-74167188 | None:intergenic | 20.0% |
| !! | GGAAAAAAGATTAGTATTTA+AGG | - | chr4_3:74167483-74167502 | Msa0662220:intron | 20.0% |
| !!! | GTATTTAAGGTTTATTTTGT+AGG | - | chr4_3:74167496-74167515 | Msa0662220:intron | 20.0% |
| !!! | TAAAGTTGTATTTTTGTTGA+TGG | - | chr4_3:74167535-74167554 | Msa0662220:intron | 20.0% |
| !! | TTCTTTTTATAGGCCAAAAA+GGG | + | chr4_3:74166920-74166939 | None:intergenic | 25.0% |
| !! | TTTCTTTTTATAGGCCAAAA+AGG | + | chr4_3:74166921-74166940 | None:intergenic | 25.0% |
| !!! | CTCTGACTATTTCTTTTTAT+AGG | + | chr4_3:74166930-74166949 | None:intergenic | 25.0% |
| ! | CTATAAAAAGAAATAGTCAG+AGG | - | chr4_3:74166928-74166947 | Msa0662220:three_prime_UTR | 25.0% |
| ! | GTGTGATATAATATGACATT+AGG | + | chr4_3:74167341-74167360 | None:intergenic | 25.0% |
| !!! | TTTTTTGCTGCATCTATTTT+TGG | - | chr4_3:74167601-74167620 | Msa0662220:CDS | 25.0% |
| !!! | TTTTTGCTGCATCTATTTTT+GGG | - | chr4_3:74167602-74167621 | Msa0662220:CDS | 25.0% |
| ! | GATACATCAATCAAATCTAT+TGG | + | chr4_3:74167645-74167664 | None:intergenic | 25.0% |
| !! | TTCTTTTTATAGGCCAAAAA+GGG | + | chr4_3:74166920-74166939 | None:intergenic | 25.0% |
| !! | TTTCTTTTTATAGGCCAAAA+AGG | + | chr4_3:74166921-74166940 | None:intergenic | 25.0% |
| !!! | CTCTGACTATTTCTTTTTAT+AGG | + | chr4_3:74166930-74166949 | None:intergenic | 25.0% |
| ! | CTATAAAAAGAAATAGTCAG+AGG | - | chr4_3:74166928-74166947 | Msa0662220:three_prime_UTR | 25.0% |
| ! | GTGTGATATAATATGACATT+AGG | + | chr4_3:74167341-74167360 | None:intergenic | 25.0% |
| !!! | TTTTTTGCTGCATCTATTTT+TGG | - | chr4_3:74167601-74167620 | Msa0662220:CDS | 25.0% |
| !!! | TTTTTGCTGCATCTATTTTT+GGG | - | chr4_3:74167602-74167621 | Msa0662220:CDS | 25.0% |
| ! | GATACATCAATCAAATCTAT+TGG | + | chr4_3:74167645-74167664 | None:intergenic | 25.0% |
| ! | TCTTTTTATAGGCCAAAAAG+GGG | + | chr4_3:74166919-74166938 | None:intergenic | 30.0% |
| !!! | ATTTTTTCCTTGCTAAGATG+TGG | + | chr4_3:74166996-74167015 | None:intergenic | 30.0% |
| TCTTATGCAAGAAAAGACTT+GGG | - | chr4_3:74167206-74167225 | Msa0662220:exon | 30.0% | |
| ! | AGAACTTGTTCAAAATCAAG+AGG | - | chr4_3:74167280-74167299 | Msa0662220:CDS | 30.0% |
| CTTCATGGAACATAAAAACA+TGG | - | chr4_3:74167425-74167444 | Msa0662220:CDS | 30.0% | |
| ATGGAACATAAAAACATGGT+TGG | - | chr4_3:74167429-74167448 | Msa0662220:CDS | 30.0% | |
| TTTGATTGATGTATCTAGTG+TGG | - | chr4_3:74167650-74167669 | Msa0662220:five_prime_UTR | 30.0% | |
| ATACCAAACACAATACATCT+GGG | + | chr4_3:74167712-74167731 | None:intergenic | 30.0% | |
| AATACCAAACACAATACATC+TGG | + | chr4_3:74167713-74167732 | None:intergenic | 30.0% | |
| ! | TCTTTTTATAGGCCAAAAAG+GGG | + | chr4_3:74166919-74166938 | None:intergenic | 30.0% |
| !!! | ATTTTTTCCTTGCTAAGATG+TGG | + | chr4_3:74166996-74167015 | None:intergenic | 30.0% |
| TCTTATGCAAGAAAAGACTT+GGG | - | chr4_3:74167206-74167225 | Msa0662220:exon | 30.0% | |
| ! | AGAACTTGTTCAAAATCAAG+AGG | - | chr4_3:74167280-74167299 | Msa0662220:CDS | 30.0% |
| CTTCATGGAACATAAAAACA+TGG | - | chr4_3:74167425-74167444 | Msa0662220:CDS | 30.0% | |
| ATGGAACATAAAAACATGGT+TGG | - | chr4_3:74167429-74167448 | Msa0662220:CDS | 30.0% | |
| TTTGATTGATGTATCTAGTG+TGG | - | chr4_3:74167650-74167669 | Msa0662220:five_prime_UTR | 30.0% | |
| ATACCAAACACAATACATCT+GGG | + | chr4_3:74167712-74167731 | None:intergenic | 30.0% | |
| AATACCAAACACAATACATC+TGG | + | chr4_3:74167713-74167732 | None:intergenic | 30.0% | |
| !! | GATTTGTTAGTTTGATGGCT+AGG | + | chr4_3:74166962-74166981 | None:intergenic | 35.0% |
| TAAAAGTCCACATCTTAGCA+AGG | - | chr4_3:74166986-74167005 | Msa0662220:three_prime_UTR | 35.0% | |
| ! | CATACTCTTTTCTCTTCTTC+TGG | - | chr4_3:74167037-74167056 | Msa0662220:three_prime_UTR | 35.0% |
| ! | AGTCTTTTCTTGCATAAGAG+AGG | + | chr4_3:74167205-74167224 | None:intergenic | 35.0% |
| CTCTTATGCAAGAAAAGACT+TGG | - | chr4_3:74167205-74167224 | Msa0662220:exon | 35.0% | |
| GAAAAGACTTGGGAGATTAT+TGG | - | chr4_3:74167216-74167235 | Msa0662220:exon | 35.0% | |
| ACAAGTTCTTTGATTGCTTC+AGG | + | chr4_3:74167269-74167288 | None:intergenic | 35.0% | |
| ! | TTGTTTCTTCTTCTGCTTCT+TGG | + | chr4_3:74167375-74167394 | None:intergenic | 35.0% |
| TACCAAACACAATACATCTG+GGG | + | chr4_3:74167711-74167730 | None:intergenic | 35.0% | |
| AGTCAAAAGACAGTGAAACT+TGG | - | chr4_3:74167740-74167759 | Msa0662220:five_prime_UTR | 35.0% | |
| AAAAGACAGTGAAACTTGGA+TGG | - | chr4_3:74167744-74167763 | Msa0662220:five_prime_UTR | 35.0% | |
| GAAACTTGGATGGTATTTGA+TGG | - | chr4_3:74167754-74167773 | Msa0662220:five_prime_UTR | 35.0% | |
| !! | GATTTGTTAGTTTGATGGCT+AGG | + | chr4_3:74166962-74166981 | None:intergenic | 35.0% |
| TAAAAGTCCACATCTTAGCA+AGG | - | chr4_3:74166986-74167005 | Msa0662220:three_prime_UTR | 35.0% | |
| ! | CATACTCTTTTCTCTTCTTC+TGG | - | chr4_3:74167037-74167056 | Msa0662220:three_prime_UTR | 35.0% |
| ! | AGTCTTTTCTTGCATAAGAG+AGG | + | chr4_3:74167205-74167224 | None:intergenic | 35.0% |
| CTCTTATGCAAGAAAAGACT+TGG | - | chr4_3:74167205-74167224 | Msa0662220:exon | 35.0% | |
| GAAAAGACTTGGGAGATTAT+TGG | - | chr4_3:74167216-74167235 | Msa0662220:exon | 35.0% | |
| ACAAGTTCTTTGATTGCTTC+AGG | + | chr4_3:74167269-74167288 | None:intergenic | 35.0% | |
| ! | TTGTTTCTTCTTCTGCTTCT+TGG | + | chr4_3:74167375-74167394 | None:intergenic | 35.0% |
| TACCAAACACAATACATCTG+GGG | + | chr4_3:74167711-74167730 | None:intergenic | 35.0% | |
| AGTCAAAAGACAGTGAAACT+TGG | - | chr4_3:74167740-74167759 | Msa0662220:five_prime_UTR | 35.0% | |
| AAAAGACAGTGAAACTTGGA+TGG | - | chr4_3:74167744-74167763 | Msa0662220:five_prime_UTR | 35.0% | |
| TGGTACAACCGTGTATAAAG+TGG | - | chr4_3:74166892-74166911 | Msa0662220:three_prime_UTR | 40.0% | |
| GGTACAACCGTGTATAAAGT+GGG | - | chr4_3:74166893-74166912 | Msa0662220:three_prime_UTR | 40.0% | |
| GAGTATGAGAGAAGCAAAGA+TGG | + | chr4_3:74167024-74167043 | None:intergenic | 40.0% | |
| TCTTTGATTGCTTCAGGCAT+AGG | + | chr4_3:74167263-74167282 | None:intergenic | 40.0% | |
| AACTCTGAACAAGAGCTTCA+TGG | - | chr4_3:74167410-74167429 | Msa0662220:CDS | 40.0% | |
| TGGTACAACCGTGTATAAAG+TGG | - | chr4_3:74166892-74166911 | Msa0662220:three_prime_UTR | 40.0% | |
| GGTACAACCGTGTATAAAGT+GGG | - | chr4_3:74166893-74166912 | Msa0662220:three_prime_UTR | 40.0% | |
| GAGTATGAGAGAAGCAAAGA+TGG | + | chr4_3:74167024-74167043 | None:intergenic | 40.0% | |
| TCTTTGATTGCTTCAGGCAT+AGG | + | chr4_3:74167263-74167282 | None:intergenic | 40.0% | |
| AACTCTGAACAAGAGCTTCA+TGG | - | chr4_3:74167410-74167429 | Msa0662220:CDS | 40.0% | |
| AAAGGGGCCCACTTTATACA+CGG | + | chr4_3:74166903-74166922 | None:intergenic | 45.0% | |
| ! | GTATAAAGTGGGCCCCTTTT+TGG | - | chr4_3:74166904-74166923 | Msa0662220:three_prime_UTR | 45.0% |
| TGATTGCTTCAGGCATAGGT+TGG | + | chr4_3:74167259-74167278 | None:intergenic | 45.0% | |
| CTCCCCAGATGTATTGTGTT+TGG | - | chr4_3:74167706-74167725 | Msa0662220:five_prime_UTR | 45.0% | |
| AAAGGGGCCCACTTTATACA+CGG | + | chr4_3:74166903-74166922 | None:intergenic | 45.0% | |
| ! | GTATAAAGTGGGCCCCTTTT+TGG | - | chr4_3:74166904-74166923 | Msa0662220:three_prime_UTR | 45.0% |
| TGATTGCTTCAGGCATAGGT+TGG | + | chr4_3:74167259-74167278 | None:intergenic | 45.0% | |
| CTCCCCAGATGTATTGTGTT+TGG | - | chr4_3:74167706-74167725 | Msa0662220:five_prime_UTR | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 74166884 | 74167775 | 74166884 | ID=Msa0662220;Name=Msa0662220 |
| chr4_3 | mRNA | 74166884 | 74167775 | 74166884 | ID=Msa0662220-mRNA-1;Parent=Msa0662220;Name=Msa0662220-mRNA-1;_AED=0.08;_eAED=0.08;_QI=130|1|1|1|1|1|2|336|96 |
| chr4_3 | exon | 74166884 | 74167465 | 74166884 | ID=Msa0662220-mRNA-1:exon:22344;Parent=Msa0662220-mRNA-1 |
| chr4_3 | exon | 74167601 | 74167775 | 74167601 | ID=Msa0662220-mRNA-1:exon:22343;Parent=Msa0662220-mRNA-1 |
| chr4_3 | five_prime_UTR | 74167646 | 74167775 | 74167646 | ID=Msa0662220-mRNA-1:five_prime_utr;Parent=Msa0662220-mRNA-1 |
| chr4_3 | CDS | 74167601 | 74167645 | 74167601 | ID=Msa0662220-mRNA-1:cds;Parent=Msa0662220-mRNA-1 |
| chr4_3 | CDS | 74167220 | 74167465 | 74167220 | ID=Msa0662220-mRNA-1:cds;Parent=Msa0662220-mRNA-1 |
| chr4_3 | three_prime_UTR | 74166884 | 74167219 | 74166884 | ID=Msa0662220-mRNA-1:three_prime_utr;Parent=Msa0662220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
