Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549950 | AES89076.1 | 92.708 | 96 | 5 | 1 | 1 | 96 | 1 | 94 | 1.82e-57 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549950 | G7JG36 | 92.708 | 96 | 5 | 1 | 1 | 96 | 1 | 94 | 8.69e-58 | 182 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026780 | Msa0549950 | 0.841950 | 3.482196e-58 | -8.615850e-47 |
| Msa0037080 | Msa0549950 | 0.803141 | 4.015419e-49 | -8.615850e-47 |
| Msa0091730 | Msa0549950 | 0.846370 | 2.267315e-59 | -8.615850e-47 |
| Msa0092480 | Msa0549950 | -0.806351 | 8.580109e-50 | -8.615850e-47 |
| Msa0120880 | Msa0549950 | 0.804127 | 2.507584e-49 | -8.615850e-47 |
| Msa0122530 | Msa0549950 | 0.872269 | 3.619399e-67 | -8.615850e-47 |
| Msa0131270 | Msa0549950 | 0.810245 | 1.268531e-50 | -8.615850e-47 |
| Msa0186540 | Msa0549950 | 0.845608 | 3.652027e-59 | -8.615850e-47 |
| Msa0194920 | Msa0549950 | 0.809776 | 1.600898e-50 | -8.615850e-47 |
| Msa0204960 | Msa0549950 | 0.827434 | 1.567511e-54 | -8.615850e-47 |
| Msa0215990 | Msa0549950 | 0.854307 | 1.342661e-61 | -8.615850e-47 |
| Msa0217670 | Msa0549950 | 0.838498 | 2.775178e-57 | -8.615850e-47 |
| Msa0237300 | Msa0549950 | 0.801509 | 8.708472e-49 | -8.615850e-47 |
| Msa0367540 | Msa0549950 | -0.819244 | 1.285777e-52 | -8.615850e-47 |
| Msa0374220 | Msa0549950 | 0.833213 | 6.066771e-56 | -8.615850e-47 |
| Msa0377820 | Msa0549950 | 0.819359 | 1.210346e-52 | -8.615850e-47 |
| Msa0385500 | Msa0549950 | 0.828207 | 1.022309e-54 | -8.615850e-47 |
| Msa0385740 | Msa0549950 | 0.837153 | 6.149748e-57 | -8.615850e-47 |
| Msa0426580 | Msa0549950 | 0.833022 | 6.770313e-56 | -8.615850e-47 |
| Msa0431980 | Msa0549950 | 0.801618 | 8.271879e-49 | -8.615850e-47 |
| Msa0439960 | Msa0549950 | 0.813589 | 2.370854e-51 | -8.615850e-47 |
| Msa0469890 | Msa0549950 | 0.834748 | 2.504748e-56 | -8.615850e-47 |
| Msa0472930 | Msa0549950 | 0.819256 | 1.277734e-52 | -8.615850e-47 |
| Msa0256140 | Msa0549950 | 0.862788 | 3.953810e-64 | -8.615850e-47 |
| Msa0257490 | Msa0549950 | 0.801439 | 9.000508e-49 | -8.615850e-47 |
| Msa0259680 | Msa0549950 | 0.809459 | 1.872514e-50 | -8.615850e-47 |
| Msa0274720 | Msa0549950 | 0.808348 | 3.237753e-50 | -8.615850e-47 |
| Msa0296790 | Msa0549950 | 0.824027 | 1.007979e-53 | -8.615850e-47 |
| Msa0304730 | Msa0549950 | 0.812879 | 3.394947e-51 | -8.615850e-47 |
| Msa0315520 | Msa0549950 | 0.806876 | 6.646893e-50 | -8.615850e-47 |
| Msa0336450 | Msa0549950 | 0.814994 | 1.160398e-51 | -8.615850e-47 |
| Msa0337710 | Msa0549950 | 0.800108 | 1.682126e-48 | -8.615850e-47 |
| Msa0341480 | Msa0549950 | 0.817654 | 2.948098e-52 | -8.615850e-47 |
| Msa0343500 | Msa0549950 | 0.805107 | 1.566163e-49 | -8.615850e-47 |
| Msa0515340 | Msa0549950 | 0.827146 | 1.837891e-54 | -8.615850e-47 |
| Msa0517590 | Msa0549950 | 0.818075 | 2.368896e-52 | -8.615850e-47 |
| Msa0527540 | Msa0549950 | 0.804761 | 1.849748e-49 | -8.615850e-47 |
| Msa0542560 | Msa0549950 | 0.808447 | 3.083315e-50 | -8.615850e-47 |
| Msa0549950 | Msa0566940 | -0.814750 | 1.314153e-51 | -8.615850e-47 |
| Msa0549950 | Msa0604290 | 0.807944 | 3.946646e-50 | -8.615850e-47 |
| Msa0549950 | Msa0610550 | 0.823105 | 1.657002e-53 | -8.615850e-47 |
| Msa0549950 | Msa0626920 | 0.805846 | 1.095821e-49 | -8.615850e-47 |
| Msa0549950 | Msa0646020 | 0.986451 | 7.841998e-167 | -8.615850e-47 |
| Msa0549950 | Msa0646420 | 0.995898 | 4.207703e-221 | -8.615850e-47 |
| Msa0549950 | Msa0662220 | 0.993635 | 3.996227e-201 | -8.615850e-47 |
| Msa0549950 | Msa0671210 | 0.804381 | 2.220085e-49 | -8.615850e-47 |
| Msa0549950 | Msa0686030 | 0.919670 | 3.367287e-87 | -8.615850e-47 |
| Msa0549950 | Msa0694140 | 0.818891 | 1.546664e-52 | -8.615850e-47 |
| Msa0549950 | Msa0712860 | 0.800078 | 1.705655e-48 | -8.615850e-47 |
| Msa0549950 | Msa0769970 | 0.801136 | 1.038188e-48 | -8.615850e-47 |
| Msa0549950 | Msa0776560 | 0.836029 | 1.188698e-56 | -8.615850e-47 |
| Msa0549950 | Msa0800480 | 0.808454 | 3.072839e-50 | -8.615850e-47 |
| Msa0549950 | Msa0878220 | 0.819364 | 1.207112e-52 | -8.615850e-47 |
| Msa0549950 | Msa0943970 | 0.811764 | 5.946155e-51 | -8.615850e-47 |
| Msa0549950 | Msa0944020 | 0.853571 | 2.188161e-61 | -8.615850e-47 |
| Msa0549950 | Msa0946110 | 0.800680 | 1.286205e-48 | -8.615850e-47 |
| Msa0549950 | Msa0982190 | 0.802479 | 5.502220e-49 | -8.615850e-47 |
| Msa0549950 | Msa0992510 | 0.826489 | 2.637691e-54 | -8.615850e-47 |
| Msa0549950 | Msa1175350 | 0.800143 | 1.654632e-48 | -8.615850e-47 |
| Msa0549950 | Msa1184230 | 0.836000 | 1.208991e-56 | -8.615850e-47 |
| Msa0549950 | Msa1190100 | -0.813535 | 2.436794e-51 | -8.615850e-47 |
| Msa0549950 | Msa1228040 | 0.819613 | 1.059309e-52 | -8.615850e-47 |
| Msa0549950 | Msa1258030 | -0.822685 | 2.075831e-53 | -8.615850e-47 |
| Msa0549950 | Msa1265520 | -0.800839 | 1.194046e-48 | -8.615850e-47 |
| Msa0549950 | Msa1271130 | 0.800589 | 1.342473e-48 | -8.615850e-47 |
| Msa0549950 | Msa1357560 | 0.843416 | 1.420374e-58 | -8.615850e-47 |
| Msa0549950 | Msa1364350 | -0.809211 | 2.116647e-50 | -8.615850e-47 |
| Msa0549950 | Msa1383630 | 0.801643 | 8.173597e-49 | -8.615850e-47 |
| Msa0549950 | Msa1392980 | 0.843015 | 1.816333e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549950 | MtrunA17_Chr4g0034761 | 92.708 | 96 | 5 | 1 | 1 | 96 | 11 | 104 | 2.09e-61 | 182 |
| Msa0549950 | MtrunA17_Chr5g0446661 | 60.215 | 93 | 30 | 2 | 1 | 87 | 1 | 92 | 1.01e-25 | 91.7 |
| Msa0549950 | MtrunA17_Chr3g0078771 | 61.538 | 78 | 24 | 1 | 1 | 72 | 1 | 78 | 2.44e-22 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0549950 | AT1G49310.1 | 42.254 | 71 | 37 | 2 | 8 | 74 | 12 | 82 | 7.49e-13 | 58.9 |
Find 29 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTTCTTCTTCTGCTTCT+TGG | 0.153872 | 4_1:-45279786 | None:intergenic |
| TTAATATCTTATATGTTATA+TGG | 0.245081 | 4_1:+45279876 | Msa0549950:three_prime_UTR |
| GAAAAGACTTGGGAGATTAT+TGG | 0.261061 | 4_1:+45279630 | Msa0549950:CDS |
| AATTAGATTTGTTAGTTTGA+TGG | 0.285742 | 4_1:-45279378 | None:intergenic |
| CTCCCCAGATGTATTGTGTT+TGG | 0.312718 | 4_1:+45280120 | Msa0549950:three_prime_UTR |
| ACAAGTTCTTTGATTGCTTC+AGG | 0.324229 | 4_1:-45279680 | None:intergenic |
| TTGTTGGCACCAGTTGAAAT+TGG | 0.331468 | 4_1:+45279286 | None:intergenic |
| AAATACATCTATAGATAAAA+AGG | 0.351346 | 4_1:-45279978 | None:intergenic |
| AACTCTGAACAAGAGCTTCA+TGG | 0.354626 | 4_1:+45279824 | Msa0549950:CDS |
| AATACCAAACACAATACATC+TGG | 0.373946 | 4_1:-45280124 | None:intergenic |
| GATACATCAATCAAATCTAT+TGG | 0.418852 | 4_1:-45280056 | None:intergenic |
| CTCTTATGCAAGAAAAGACT+TGG | 0.442343 | 4_1:+45279619 | Msa0549950:CDS |
| GAGTATGAGAGAAGCAAAGA+TGG | 0.451907 | 4_1:-45279435 | None:intergenic |
| GATTTGTTAGTTTGATGGCT+AGG | 0.457950 | 4_1:-45279373 | None:intergenic |
| TCTTTGATTGCTTCAGGCAT+AGG | 0.472850 | 4_1:-45279674 | None:intergenic |
| ACGGTTGTACCAATTTCAAC+TGG | 0.472939 | 4_1:-45279295 | None:intergenic |
| AGTCAAAAGACAGTGAAACT+TGG | 0.478801 | 4_1:+45280154 | Msa0549950:three_prime_UTR |
| GTGTGATATAATATGACATT+AGG | 0.480243 | 4_1:-45279752 | None:intergenic |
| TGATTGCTTCAGGCATAGGT+TGG | 0.514568 | 4_1:-45279670 | None:intergenic |
| TGGTACAACCGTGTATAAAG+TGG | 0.539054 | 4_1:+45279306 | Msa0549950:five_prime_UTR |
| AGAACTTGTTCAAAATCAAG+AGG | 0.539159 | 4_1:+45279694 | Msa0549950:CDS |
| TTTGATTGATGTATCTAGTG+TGG | 0.552142 | 4_1:+45280064 | Msa0549950:three_prime_UTR |
| ATACCAAACACAATACATCT+GGG | 0.600413 | 4_1:-45280123 | None:intergenic |
| AAAAGACAGTGAAACTTGGA+TGG | 0.605833 | 4_1:+45280158 | Msa0549950:three_prime_UTR |
| TCTTATGCAAGAAAAGACTT+GGG | 0.611202 | 4_1:+45279620 | Msa0549950:CDS |
| TAAAAGTCCACATCTTAGCA+AGG | 0.615141 | 4_1:+45279400 | Msa0549950:five_prime_UTR |
| GGTACAACCGTGTATAAAGT+GGG | 0.640534 | 4_1:+45279307 | Msa0549950:five_prime_UTR |
| AAAGGGGCCCACTTTATACA+CGG | 0.655601 | 4_1:-45279314 | None:intergenic |
| TACCAAACACAATACATCTG+GGG | 0.678240 | 4_1:-45280122 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATATCTTATATGTTATA+TGG | + | chr4_1:45279876-45279895 | Msa0549950:three_prime_UTR | 10.0% |
| !! | TTAATATCTTATATGTTATA+TGG | + | chr4_1:45279876-45279895 | Msa0549950:three_prime_UTR | 10.0% |
| !! | ACAATATAGTATAAATTGAT+TGG | - | chr4_1:45279554-45279573 | None:intergenic | 15.0% |
| !!! | AATTTTCTTTGTACTAAAAT+AGG | + | chr4_1:45279586-45279605 | Msa0549950:intron | 15.0% |
| !!! | TATTTAAGGTTTATTTTGTA+GGG | + | chr4_1:45279911-45279930 | Msa0549950:three_prime_UTR | 15.0% |
| !! | AAATACATCTATAGATAAAA+AGG | - | chr4_1:45279981-45280000 | None:intergenic | 15.0% |
| !!! | TATCTATAGATGTATTTTTA+TGG | + | chr4_1:45279984-45280003 | Msa0549950:three_prime_UTR | 15.0% |
| !! | ACAATATAGTATAAATTGAT+TGG | - | chr4_1:45279554-45279573 | None:intergenic | 15.0% |
| !!! | AATTTTCTTTGTACTAAAAT+AGG | + | chr4_1:45279586-45279605 | Msa0549950:intron | 15.0% |
| !!! | TATTTAAGGTTTATTTTGTA+GGG | + | chr4_1:45279911-45279930 | Msa0549950:three_prime_UTR | 15.0% |
| !! | AAATACATCTATAGATAAAA+AGG | - | chr4_1:45279981-45280000 | None:intergenic | 15.0% |
| !!! | TATCTATAGATGTATTTTTA+TGG | + | chr4_1:45279984-45280003 | Msa0549950:three_prime_UTR | 15.0% |
| !!! | AATTAGATTTGTTAGTTTGA+TGG | - | chr4_1:45279381-45279400 | None:intergenic | 20.0% |
| !! | TTAGTACAAAGAAAATTGAA+AGG | - | chr4_1:45279583-45279602 | None:intergenic | 20.0% |
| !! | GGAAAAAAGATTAGTATTTA+AGG | + | chr4_1:45279897-45279916 | Msa0549950:three_prime_UTR | 20.0% |
| !!! | GTATTTAAGGTTTATTTTGT+AGG | + | chr4_1:45279910-45279929 | Msa0549950:three_prime_UTR | 20.0% |
| !!! | TAAAGTTGTATTTTTGTTGA+TGG | + | chr4_1:45279949-45279968 | Msa0549950:three_prime_UTR | 20.0% |
| !!! | AATTAGATTTGTTAGTTTGA+TGG | - | chr4_1:45279381-45279400 | None:intergenic | 20.0% |
| !! | TTAGTACAAAGAAAATTGAA+AGG | - | chr4_1:45279583-45279602 | None:intergenic | 20.0% |
| !! | GGAAAAAAGATTAGTATTTA+AGG | + | chr4_1:45279897-45279916 | Msa0549950:three_prime_UTR | 20.0% |
| !!! | GTATTTAAGGTTTATTTTGT+AGG | + | chr4_1:45279910-45279929 | Msa0549950:three_prime_UTR | 20.0% |
| !!! | TAAAGTTGTATTTTTGTTGA+TGG | + | chr4_1:45279949-45279968 | Msa0549950:three_prime_UTR | 20.0% |
| !! | TTCTTTTTATAGGCCAAAAA+GGG | - | chr4_1:45279334-45279353 | None:intergenic | 25.0% |
| !! | TTTCTTTTTATAGGCCAAAA+AGG | - | chr4_1:45279335-45279354 | None:intergenic | 25.0% |
| !!! | CTCTGACTATTTCTTTTTAT+AGG | - | chr4_1:45279344-45279363 | None:intergenic | 25.0% |
| ! | CTATAAAAAGAAATAGTCAG+AGG | + | chr4_1:45279342-45279361 | Msa0549950:five_prime_UTR | 25.0% |
| ! | GTGTGATATAATATGACATT+AGG | - | chr4_1:45279755-45279774 | None:intergenic | 25.0% |
| !!! | TTTTTTGCTGCATCTATTTT+TGG | + | chr4_1:45280015-45280034 | Msa0549950:three_prime_UTR | 25.0% |
| !!! | TTTTTGCTGCATCTATTTTT+GGG | + | chr4_1:45280016-45280035 | Msa0549950:three_prime_UTR | 25.0% |
| ! | GATACATCAATCAAATCTAT+TGG | - | chr4_1:45280059-45280078 | None:intergenic | 25.0% |
| !! | TTCTTTTTATAGGCCAAAAA+GGG | - | chr4_1:45279334-45279353 | None:intergenic | 25.0% |
| !! | TTTCTTTTTATAGGCCAAAA+AGG | - | chr4_1:45279335-45279354 | None:intergenic | 25.0% |
| !!! | CTCTGACTATTTCTTTTTAT+AGG | - | chr4_1:45279344-45279363 | None:intergenic | 25.0% |
| ! | CTATAAAAAGAAATAGTCAG+AGG | + | chr4_1:45279342-45279361 | Msa0549950:five_prime_UTR | 25.0% |
| ! | GTGTGATATAATATGACATT+AGG | - | chr4_1:45279755-45279774 | None:intergenic | 25.0% |
| !!! | TTTTTTGCTGCATCTATTTT+TGG | + | chr4_1:45280015-45280034 | Msa0549950:three_prime_UTR | 25.0% |
| !!! | TTTTTGCTGCATCTATTTTT+GGG | + | chr4_1:45280016-45280035 | Msa0549950:three_prime_UTR | 25.0% |
| ! | GATACATCAATCAAATCTAT+TGG | - | chr4_1:45280059-45280078 | None:intergenic | 25.0% |
| ! | TCTTTTTATAGGCCAAAAAG+GGG | - | chr4_1:45279333-45279352 | None:intergenic | 30.0% |
| !!! | ATTTTTTCCTTGCTAAGATG+TGG | - | chr4_1:45279410-45279429 | None:intergenic | 30.0% |
| TCTTATGCAAGAAAAGACTT+GGG | + | chr4_1:45279620-45279639 | Msa0549950:CDS | 30.0% | |
| ! | AGAACTTGTTCAAAATCAAG+AGG | + | chr4_1:45279694-45279713 | Msa0549950:CDS | 30.0% |
| CTTCATGGAACATAAAAACA+TGG | + | chr4_1:45279839-45279858 | Msa0549950:exon | 30.0% | |
| ATGGAACATAAAAACATGGT+TGG | + | chr4_1:45279843-45279862 | Msa0549950:exon | 30.0% | |
| TTTGATTGATGTATCTAGTG+TGG | + | chr4_1:45280064-45280083 | Msa0549950:three_prime_UTR | 30.0% | |
| ATACCAAACACAATACATCT+GGG | - | chr4_1:45280126-45280145 | None:intergenic | 30.0% | |
| AATACCAAACACAATACATC+TGG | - | chr4_1:45280127-45280146 | None:intergenic | 30.0% | |
| ! | TCTTTTTATAGGCCAAAAAG+GGG | - | chr4_1:45279333-45279352 | None:intergenic | 30.0% |
| !!! | ATTTTTTCCTTGCTAAGATG+TGG | - | chr4_1:45279410-45279429 | None:intergenic | 30.0% |
| TCTTATGCAAGAAAAGACTT+GGG | + | chr4_1:45279620-45279639 | Msa0549950:CDS | 30.0% | |
| ! | AGAACTTGTTCAAAATCAAG+AGG | + | chr4_1:45279694-45279713 | Msa0549950:CDS | 30.0% |
| CTTCATGGAACATAAAAACA+TGG | + | chr4_1:45279839-45279858 | Msa0549950:exon | 30.0% | |
| ATGGAACATAAAAACATGGT+TGG | + | chr4_1:45279843-45279862 | Msa0549950:exon | 30.0% | |
| TTTGATTGATGTATCTAGTG+TGG | + | chr4_1:45280064-45280083 | Msa0549950:three_prime_UTR | 30.0% | |
| ATACCAAACACAATACATCT+GGG | - | chr4_1:45280126-45280145 | None:intergenic | 30.0% | |
| AATACCAAACACAATACATC+TGG | - | chr4_1:45280127-45280146 | None:intergenic | 30.0% | |
| !! | GATTTGTTAGTTTGATGGCT+AGG | - | chr4_1:45279376-45279395 | None:intergenic | 35.0% |
| TAAAAGTCCACATCTTAGCA+AGG | + | chr4_1:45279400-45279419 | Msa0549950:five_prime_UTR | 35.0% | |
| ! | CATACTCTTTTCTCTTCTTC+TGG | + | chr4_1:45279451-45279470 | Msa0549950:CDS | 35.0% |
| ! | AGTCTTTTCTTGCATAAGAG+AGG | - | chr4_1:45279619-45279638 | None:intergenic | 35.0% |
| CTCTTATGCAAGAAAAGACT+TGG | + | chr4_1:45279619-45279638 | Msa0549950:CDS | 35.0% | |
| GAAAAGACTTGGGAGATTAT+TGG | + | chr4_1:45279630-45279649 | Msa0549950:CDS | 35.0% | |
| ACAAGTTCTTTGATTGCTTC+AGG | - | chr4_1:45279683-45279702 | None:intergenic | 35.0% | |
| ! | TTGTTTCTTCTTCTGCTTCT+TGG | - | chr4_1:45279789-45279808 | None:intergenic | 35.0% |
| TACCAAACACAATACATCTG+GGG | - | chr4_1:45280125-45280144 | None:intergenic | 35.0% | |
| AGTCAAAAGACAGTGAAACT+TGG | + | chr4_1:45280154-45280173 | Msa0549950:three_prime_UTR | 35.0% | |
| AAAAGACAGTGAAACTTGGA+TGG | + | chr4_1:45280158-45280177 | Msa0549950:three_prime_UTR | 35.0% | |
| GAAACTTGGATGGTATTTGA+TGG | + | chr4_1:45280168-45280187 | Msa0549950:three_prime_UTR | 35.0% | |
| !! | GATTTGTTAGTTTGATGGCT+AGG | - | chr4_1:45279376-45279395 | None:intergenic | 35.0% |
| TAAAAGTCCACATCTTAGCA+AGG | + | chr4_1:45279400-45279419 | Msa0549950:five_prime_UTR | 35.0% | |
| ! | CATACTCTTTTCTCTTCTTC+TGG | + | chr4_1:45279451-45279470 | Msa0549950:CDS | 35.0% |
| ! | AGTCTTTTCTTGCATAAGAG+AGG | - | chr4_1:45279619-45279638 | None:intergenic | 35.0% |
| CTCTTATGCAAGAAAAGACT+TGG | + | chr4_1:45279619-45279638 | Msa0549950:CDS | 35.0% | |
| GAAAAGACTTGGGAGATTAT+TGG | + | chr4_1:45279630-45279649 | Msa0549950:CDS | 35.0% | |
| ACAAGTTCTTTGATTGCTTC+AGG | - | chr4_1:45279683-45279702 | None:intergenic | 35.0% | |
| ! | TTGTTTCTTCTTCTGCTTCT+TGG | - | chr4_1:45279789-45279808 | None:intergenic | 35.0% |
| TACCAAACACAATACATCTG+GGG | - | chr4_1:45280125-45280144 | None:intergenic | 35.0% | |
| AGTCAAAAGACAGTGAAACT+TGG | + | chr4_1:45280154-45280173 | Msa0549950:three_prime_UTR | 35.0% | |
| AAAAGACAGTGAAACTTGGA+TGG | + | chr4_1:45280158-45280177 | Msa0549950:three_prime_UTR | 35.0% | |
| TGGTACAACCGTGTATAAAG+TGG | + | chr4_1:45279306-45279325 | Msa0549950:five_prime_UTR | 40.0% | |
| GGTACAACCGTGTATAAAGT+GGG | + | chr4_1:45279307-45279326 | Msa0549950:five_prime_UTR | 40.0% | |
| GAGTATGAGAGAAGCAAAGA+TGG | - | chr4_1:45279438-45279457 | None:intergenic | 40.0% | |
| TCTTTGATTGCTTCAGGCAT+AGG | - | chr4_1:45279677-45279696 | None:intergenic | 40.0% | |
| AACTCTGAACAAGAGCTTCA+TGG | + | chr4_1:45279824-45279843 | Msa0549950:CDS | 40.0% | |
| TGGTACAACCGTGTATAAAG+TGG | + | chr4_1:45279306-45279325 | Msa0549950:five_prime_UTR | 40.0% | |
| GGTACAACCGTGTATAAAGT+GGG | + | chr4_1:45279307-45279326 | Msa0549950:five_prime_UTR | 40.0% | |
| GAGTATGAGAGAAGCAAAGA+TGG | - | chr4_1:45279438-45279457 | None:intergenic | 40.0% | |
| TCTTTGATTGCTTCAGGCAT+AGG | - | chr4_1:45279677-45279696 | None:intergenic | 40.0% | |
| AACTCTGAACAAGAGCTTCA+TGG | + | chr4_1:45279824-45279843 | Msa0549950:CDS | 40.0% | |
| AAAGGGGCCCACTTTATACA+CGG | - | chr4_1:45279317-45279336 | None:intergenic | 45.0% | |
| ! | GTATAAAGTGGGCCCCTTTT+TGG | + | chr4_1:45279318-45279337 | Msa0549950:five_prime_UTR | 45.0% |
| TGATTGCTTCAGGCATAGGT+TGG | - | chr4_1:45279673-45279692 | None:intergenic | 45.0% | |
| CTCCCCAGATGTATTGTGTT+TGG | + | chr4_1:45280120-45280139 | Msa0549950:three_prime_UTR | 45.0% | |
| AAAGGGGCCCACTTTATACA+CGG | - | chr4_1:45279317-45279336 | None:intergenic | 45.0% | |
| ! | GTATAAAGTGGGCCCCTTTT+TGG | + | chr4_1:45279318-45279337 | Msa0549950:five_prime_UTR | 45.0% |
| TGATTGCTTCAGGCATAGGT+TGG | - | chr4_1:45279673-45279692 | None:intergenic | 45.0% | |
| CTCCCCAGATGTATTGTGTT+TGG | + | chr4_1:45280120-45280139 | Msa0549950:three_prime_UTR | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 45279298 | 45280189 | 45279298 | ID=Msa0549950;Name=Msa0549950 |
| chr4_1 | mRNA | 45279298 | 45280189 | 45279298 | ID=Msa0549950-mRNA-1;Parent=Msa0549950;Name=Msa0549950-mRNA-1;_AED=0.08;_eAED=0.08;_QI=130|1|1|1|1|1|2|336|96 |
| chr4_1 | exon | 45279298 | 45279472 | 45279298 | ID=Msa0549950-mRNA-1:exon:11893;Parent=Msa0549950-mRNA-1 |
| chr4_1 | exon | 45279608 | 45280189 | 45279608 | ID=Msa0549950-mRNA-1:exon:11894;Parent=Msa0549950-mRNA-1 |
| chr4_1 | five_prime_UTR | 45279298 | 45279427 | 45279298 | ID=Msa0549950-mRNA-1:five_prime_utr;Parent=Msa0549950-mRNA-1 |
| chr4_1 | CDS | 45279428 | 45279472 | 45279428 | ID=Msa0549950-mRNA-1:cds;Parent=Msa0549950-mRNA-1 |
| chr4_1 | CDS | 45279608 | 45279853 | 45279608 | ID=Msa0549950-mRNA-1:cds;Parent=Msa0549950-mRNA-1 |
| chr4_1 | three_prime_UTR | 45279854 | 45280189 | 45279854 | ID=Msa0549950-mRNA-1:three_prime_utr;Parent=Msa0549950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
