Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1285360 | sp|Q9SEU6|TRXM4_ARATH | 65.354 | 127 | 41 | 2 | 53 | 177 | 66 | 191 | 4.02e-58 | 183 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1285360 | A0A072TQG2 | 94.915 | 177 | 8 | 1 | 1 | 177 | 1 | 176 | 7.87e-117 | 337 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0772280 | Msa1285360 | -0.801261 | 9.785603e-49 | -8.615850e-47 |
| Msa0833950 | Msa1285360 | 0.812285 | 4.577421e-51 | -8.615850e-47 |
| Msa0138990 | Msa1285360 | 0.830850 | 2.328107e-55 | -8.615850e-47 |
| Msa0140770 | Msa1285360 | 0.818681 | 1.726535e-52 | -8.615850e-47 |
| Msa0152850 | Msa1285360 | -0.810644 | 1.040362e-50 | -8.615850e-47 |
| Msa0220400 | Msa1285360 | 0.809462 | 1.870043e-50 | -8.615850e-47 |
| Msa1285360 | Msa1330540 | 0.802775 | 4.779617e-49 | -8.615850e-47 |
| Msa0479760 | Msa1285360 | 0.815186 | 1.051725e-51 | -8.615850e-47 |
| Msa0523430 | Msa1285360 | 0.814993 | 1.160603e-51 | -8.615850e-47 |
| Msa0523490 | Msa1285360 | 0.805045 | 1.613489e-49 | -8.615850e-47 |
| Msa0536350 | Msa1285360 | -0.809915 | 1.494293e-50 | -8.615850e-47 |
| Msa0559450 | Msa1285360 | 0.819414 | 1.176106e-52 | -8.615850e-47 |
| Msa0870460 | Msa1285360 | 0.849851 | 2.479201e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1285360 | MtrunA17_Chr8g0360031 | 94.915 | 177 | 8 | 1 | 1 | 177 | 1 | 176 | 1.52e-120 | 337 |
| Msa1285360 | MtrunA17_Chr2g0317731 | 63.889 | 180 | 55 | 4 | 1 | 177 | 1 | 173 | 3.03e-75 | 223 |
| Msa1285360 | MtrunA17_Chr3g0125821 | 59.310 | 145 | 58 | 1 | 33 | 177 | 30 | 173 | 1.69e-61 | 188 |
| Msa1285360 | MtrunA17_Chr4g0044731 | 50.000 | 96 | 48 | 0 | 82 | 177 | 73 | 168 | 3.75e-35 | 121 |
| Msa1285360 | MtrunA17_Chr2g0317721 | 37.795 | 127 | 77 | 1 | 49 | 175 | 18 | 142 | 1.33e-31 | 111 |
| Msa1285360 | MtrunA17_Chr2g0317701 | 48.113 | 106 | 54 | 1 | 70 | 174 | 42 | 147 | 6.48e-28 | 102 |
| Msa1285360 | MtrunA17_Chr2g0317711 | 37.209 | 129 | 78 | 2 | 49 | 177 | 18 | 143 | 1.12e-24 | 93.6 |
| Msa1285360 | MtrunA17_Chr1g0201781 | 36.082 | 97 | 62 | 0 | 78 | 174 | 66 | 162 | 1.13e-21 | 86.7 |
| Msa1285360 | MtrunA17_Chr1g0211871 | 35.780 | 109 | 62 | 2 | 74 | 177 | 70 | 175 | 6.76e-21 | 84.7 |
| Msa1285360 | MtrunA17_Chr5g0404831 | 37.069 | 116 | 63 | 4 | 65 | 177 | 7 | 115 | 1.95e-16 | 71.6 |
| Msa1285360 | MtrunA17_Chr2g0317691 | 45.312 | 64 | 35 | 0 | 114 | 177 | 3 | 66 | 3.98e-16 | 69.7 |
| Msa1285360 | MtrunA17_Chr7g0216481 | 34.343 | 99 | 60 | 4 | 80 | 175 | 35 | 131 | 1.31e-15 | 69.7 |
| Msa1285360 | MtrunA17_Chr5g0438731 | 36.735 | 98 | 61 | 1 | 59 | 155 | 46 | 143 | 9.46e-14 | 68.2 |
| Msa1285360 | MtrunA17_Chr5g0438731 | 27.692 | 130 | 87 | 4 | 33 | 158 | 148 | 274 | 6.33e-12 | 63.2 |
| Msa1285360 | MtrunA17_Chr4g0052481 | 41.667 | 72 | 39 | 2 | 94 | 163 | 85 | 155 | 1.14e-13 | 65.5 |
| Msa1285360 | MtrunA17_Chr1g0155721 | 36.364 | 88 | 54 | 2 | 88 | 175 | 26 | 111 | 2.32e-13 | 63.5 |
| Msa1285360 | MtrunA17_Chr3g0142051 | 35.632 | 87 | 54 | 2 | 89 | 175 | 27 | 111 | 8.79e-13 | 62.0 |
| Msa1285360 | MtrunA17_Chr2g0287471 | 36.082 | 97 | 62 | 0 | 59 | 155 | 15 | 111 | 2.24e-12 | 63.9 |
| Msa1285360 | MtrunA17_Chr8g0393201 | 38.272 | 81 | 48 | 2 | 93 | 173 | 252 | 330 | 3.36e-12 | 63.5 |
| Msa1285360 | MtrunA17_Chr7g0258871 | 33.766 | 77 | 50 | 1 | 88 | 163 | 93 | 169 | 1.02e-11 | 60.5 |
| Msa1285360 | MtrunA17_Chr2g0280411 | 34.483 | 87 | 55 | 2 | 91 | 177 | 32 | 116 | 1.03e-11 | 59.3 |
| Msa1285360 | MtrunA17_Chr1g0164481 | 30.233 | 86 | 58 | 1 | 92 | 175 | 94 | 179 | 7.55e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1285360 | AT3G15360.1 | 65.354 | 127 | 41 | 2 | 53 | 177 | 66 | 191 | 4.08e-59 | 183 |
| Msa1285360 | AT1G03680.1 | 55.405 | 148 | 61 | 2 | 30 | 177 | 37 | 179 | 7.67e-56 | 174 |
| Msa1285360 | AT4G03520.1 | 54.730 | 148 | 66 | 1 | 30 | 177 | 39 | 185 | 2.81e-55 | 173 |
| Msa1285360 | AT2G15570.2 | 48.515 | 101 | 52 | 0 | 77 | 177 | 72 | 172 | 2.50e-34 | 119 |
| Msa1285360 | AT2G15570.1 | 48.515 | 101 | 52 | 0 | 77 | 177 | 71 | 171 | 2.51e-34 | 119 |
| Msa1285360 | AT4G03520.2 | 69.014 | 71 | 22 | 0 | 107 | 177 | 1 | 71 | 1.21e-31 | 109 |
| Msa1285360 | AT1G76760.1 | 38.144 | 97 | 60 | 0 | 81 | 177 | 72 | 168 | 2.30e-22 | 88.6 |
| Msa1285360 | AT1G43560.1 | 38.144 | 97 | 60 | 0 | 81 | 177 | 67 | 163 | 2.14e-21 | 85.9 |
| Msa1285360 | AT1G50320.1 | 32.117 | 137 | 85 | 2 | 43 | 177 | 46 | 176 | 3.63e-19 | 80.5 |
| Msa1285360 | AT3G51030.1 | 43.333 | 90 | 49 | 2 | 88 | 177 | 26 | 113 | 1.23e-16 | 72.4 |
| Msa1285360 | AT1G19730.1 | 37.500 | 88 | 54 | 1 | 88 | 175 | 26 | 112 | 6.98e-16 | 70.5 |
| Msa1285360 | AT4G12170.1 | 37.634 | 93 | 58 | 0 | 74 | 166 | 51 | 143 | 1.84e-15 | 70.1 |
| Msa1285360 | AT1G52990.1 | 33.043 | 115 | 64 | 3 | 75 | 177 | 200 | 313 | 3.37e-15 | 72.0 |
| Msa1285360 | AT5G39950.1 | 35.000 | 100 | 60 | 3 | 80 | 176 | 34 | 131 | 2.36e-14 | 66.6 |
| Msa1285360 | AT2G35010.2 | 34.483 | 116 | 64 | 4 | 50 | 163 | 75 | 180 | 3.13e-14 | 67.8 |
| Msa1285360 | AT2G35010.1 | 34.483 | 116 | 64 | 4 | 50 | 163 | 75 | 180 | 3.13e-14 | 67.8 |
| Msa1285360 | AT5G42980.1 | 32.955 | 88 | 57 | 2 | 88 | 175 | 25 | 110 | 1.08e-13 | 64.7 |
| Msa1285360 | AT3G54960.2 | 33.010 | 103 | 68 | 1 | 73 | 175 | 100 | 201 | 7.15e-13 | 66.2 |
| Msa1285360 | AT2G32920.1 | 38.462 | 78 | 48 | 0 | 74 | 151 | 32 | 109 | 7.73e-13 | 65.9 |
| Msa1285360 | AT2G32920.1 | 36.000 | 75 | 48 | 0 | 77 | 151 | 167 | 241 | 2.87e-12 | 64.3 |
| Msa1285360 | AT1G45145.1 | 33.333 | 87 | 51 | 2 | 77 | 163 | 20 | 99 | 1.09e-12 | 62.0 |
| Msa1285360 | AT1G04980.1 | 37.179 | 78 | 49 | 0 | 74 | 151 | 34 | 111 | 1.40e-12 | 65.1 |
| Msa1285360 | AT1G04980.1 | 34.667 | 75 | 49 | 0 | 77 | 151 | 172 | 246 | 2.34e-12 | 64.7 |
| Msa1285360 | AT3G54960.1 | 33.010 | 103 | 68 | 1 | 73 | 175 | 100 | 201 | 3.09e-12 | 64.3 |
| Msa1285360 | AT1G31020.1 | 31.193 | 109 | 69 | 3 | 59 | 162 | 37 | 144 | 8.54e-12 | 60.5 |
| Msa1285360 | AT3G53220.1 | 41.333 | 75 | 41 | 3 | 89 | 163 | 42 | 113 | 4.08e-11 | 58.2 |
| Msa1285360 | AT5G06690.1 | 32.432 | 74 | 49 | 1 | 91 | 163 | 119 | 192 | 9.96e-11 | 58.5 |
Find 65 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGGAAATTTAACATGTTC+TGG | 0.224916 | 8_3:-29312948 | None:intergenic |
| GAGAAAATGGGTCTGGGCTT+GGG | 0.264799 | 8_3:-29309152 | None:intergenic |
| TTGCTAGTTCATCAATTATA+GGG | 0.270606 | 8_3:-29312523 | None:intergenic |
| TGGGCTTGGGGTTGGGTCTG+AGG | 0.271631 | 8_3:-29309139 | None:intergenic |
| ATGGGTCTGGGCTTGGGGTT+GGG | 0.277851 | 8_3:-29309146 | None:intergenic |
| AGTGGAGTGAGTGGAGAAAA+TGG | 0.296510 | 8_3:-29309165 | None:intergenic |
| ATTGCTAGTTCATCAATTAT+AGG | 0.309012 | 8_3:-29312524 | None:intergenic |
| CGAATCTGAATCTCCCGTTT+TGG | 0.351676 | 8_3:+29312457 | Msa1285360:CDS |
| CTGCTATCACCGATGCAAAT+TGG | 0.356246 | 8_3:+29312420 | Msa1285360:CDS |
| GGAGAAAATGGGTCTGGGCT+TGG | 0.357819 | 8_3:-29309153 | None:intergenic |
| AATGGGTCTGGGCTTGGGGT+TGG | 0.371979 | 8_3:-29309147 | None:intergenic |
| GAACTAGCAATACAATATAC+TGG | 0.398934 | 8_3:+29312536 | Msa1285360:CDS |
| TTAATTTAGATATTAGTGTT+TGG | 0.411138 | 8_3:-29308949 | None:intergenic |
| AGAAAATGGGTCTGGGCTTG+GGG | 0.435595 | 8_3:-29309151 | None:intergenic |
| GTGAGTGGAGAAAATGGGTC+TGG | 0.435962 | 8_3:-29309159 | None:intergenic |
| ACGCGTAGTGTGTGAGGCTC+AGG | 0.442187 | 8_3:+29309214 | Msa1285360:CDS |
| CAATTTGCATCGGTGATAGC+AGG | 0.443387 | 8_3:-29312419 | None:intergenic |
| GCCCAGAATTCAACCAAAAC+GGG | 0.446890 | 8_3:-29312470 | None:intergenic |
| TGGGTCTGAGGCCCACGTAA+CGG | 0.458501 | 8_3:-29309127 | None:intergenic |
| GCTTGATGTCAGTGTTGACT+TGG | 0.459894 | 8_3:-29312690 | None:intergenic |
| AGCCCAGAATTCAACCAAAA+CGG | 0.482872 | 8_3:-29312471 | None:intergenic |
| TATAGGGGTGATCATTCTGC+AGG | 0.501022 | 8_3:-29312507 | None:intergenic |
| TGGTTGAATTCTGGGCTCCA+TGG | 0.502481 | 8_3:+29312477 | Msa1285360:CDS |
| CAGGATACCGCTGTTGATGA+TGG | 0.503313 | 8_3:+29309233 | Msa1285360:CDS |
| CACTTTCTTTCAGTTTCCGA+TGG | 0.505061 | 8_3:+29309016 | Msa1285360:exon |
| GGTCTGAGGCCCACGTAACG+GGG | 0.514866 | 8_3:-29309125 | None:intergenic |
| TAGATATTAGTGTTTGGAGA+AGG | 0.518741 | 8_3:-29308943 | None:intergenic |
| CTTTGAAGATCATAACTGTC+GGG | 0.521915 | 8_3:-29312631 | None:intergenic |
| GTGGAGTGAGTGGAGAAAAT+GGG | 0.533093 | 8_3:-29309164 | None:intergenic |
| ATTTATGGAAACATGATACA+TGG | 0.542457 | 8_3:-29312808 | None:intergenic |
| CCTTCGACTGCTACCCGGTA+CGG | 0.545287 | 8_3:+29312596 | Msa1285360:CDS |
| AGTGCGAGGGACGACGGCGA+TGG | 0.548132 | 8_3:-29309054 | None:intergenic |
| ACAGTTATGATCTTCAAAGA+TGG | 0.556904 | 8_3:+29312635 | Msa1285360:CDS |
| TGAGTGGAGAAAATGGGTCT+GGG | 0.558559 | 8_3:-29309158 | None:intergenic |
| GAGTGCAACGACGGGAGTGA+TGG | 0.559427 | 8_3:-29309084 | None:intergenic |
| GGATACTTCGAATTCCGTAC+CGG | 0.562816 | 8_3:-29312610 | None:intergenic |
| TGCAACGACGGGAGTGATGG+CGG | 0.564235 | 8_3:-29309081 | None:intergenic |
| GGAAACATGATACATGGACT+TGG | 0.566270 | 8_3:-29312802 | None:intergenic |
| AAGTGATTGCCAATTTGCAT+CGG | 0.567079 | 8_3:-29312429 | None:intergenic |
| GAACTCCGGAGTGCAACGAC+GGG | 0.574052 | 8_3:-29309092 | None:intergenic |
| GACGGCGATGGATTCGATGA+TGG | 0.575011 | 8_3:-29309042 | None:intergenic |
| CCGTACCGGGTAGCAGTCGA+AGG | 0.576194 | 8_3:-29312596 | None:intergenic |
| CTTGATGTCAGTGTTGACTT+GGG | 0.577617 | 8_3:-29312689 | None:intergenic |
| GATTCGATGATGGTGGCCAT+CGG | 0.579134 | 8_3:-29309032 | None:intergenic |
| TCTTGAAGCAGTGGAGTGAG+TGG | 0.581599 | 8_3:-29309174 | None:intergenic |
| GGAAGAAGTGCGAGGGACGA+CGG | 0.583005 | 8_3:-29309060 | None:intergenic |
| TCTTTGAAGATCATAACTGT+CGG | 0.587407 | 8_3:-29312632 | None:intergenic |
| GATACTTCGAATTCCGTACC+GGG | 0.589642 | 8_3:-29312609 | None:intergenic |
| CAATTCACGCGTAGTGTGTG+AGG | 0.589920 | 8_3:+29309208 | Msa1285360:CDS |
| TGCTAGTTCATCAATTATAG+GGG | 0.592259 | 8_3:-29312522 | None:intergenic |
| GCTAGCAATTCTTGAAGCAG+TGG | 0.597540 | 8_3:-29309183 | None:intergenic |
| GAATTCTGGGCTCCATGGTG+TGG | 0.602377 | 8_3:+29312482 | Msa1285360:CDS |
| AGAACTCCGGAGTGCAACGA+CGG | 0.606543 | 8_3:-29309093 | None:intergenic |
| AGAGTCCTTCGACTGCTACC+CGG | 0.610576 | 8_3:+29312591 | Msa1285360:CDS |
| TCACTCCCGTCGTTGCACTC+CGG | 0.627976 | 8_3:+29309087 | Msa1285360:CDS |
| AGCAGTCGAAGGACTCTCAT+CGG | 0.630999 | 8_3:-29312585 | None:intergenic |
| TGATGGCGGAAGAAGTGCGA+GGG | 0.638488 | 8_3:-29309067 | None:intergenic |
| CACACACTACGCGTGAATTG+CGG | 0.640205 | 8_3:-29309205 | None:intergenic |
| GTGTGTGGATGAAGATGATG+TGG | 0.646215 | 8_3:-29308911 | None:intergenic |
| GGCGATGGATTCGATGATGG+TGG | 0.652050 | 8_3:-29309039 | None:intergenic |
| ATTCTGCAGGGACCACACCA+TGG | 0.653948 | 8_3:-29312494 | None:intergenic |
| GTCTGAGGCCCACGTAACGG+GGG | 0.660386 | 8_3:-29309124 | None:intergenic |
| ATAGGGGTGATCATTCTGCA+GGG | 0.696317 | 8_3:-29312506 | None:intergenic |
| GTGATGGCGGAAGAAGTGCG+AGG | 0.700405 | 8_3:-29309068 | None:intergenic |
| AAACTGACCATCATCAACAG+CGG | 0.762514 | 8_3:-29309240 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTTTTAATGAG+AGG | + | chr8_3:29311008-29311027 | Msa1285360:intron | 10.0% |
| !!! | TTTTTTTTTTTTTAATGAGA+GGG | + | chr8_3:29311009-29311028 | Msa1285360:intron | 10.0% |
| !! | TTAATTTAGATATTAGTGTT+TGG | - | chr8_3:29308952-29308971 | None:intergenic | 15.0% |
| !!! | TAAAACTTATTTTTTTGTCA+GGG | - | chr8_3:29309348-29309367 | None:intergenic | 15.0% |
| !!! | TTAAAACTTATTTTTTTGTC+AGG | - | chr8_3:29309349-29309368 | None:intergenic | 15.0% |
| !!! | AATTTGGTATTATTTTTTGT+CGG | + | chr8_3:29309430-29309449 | Msa1285360:intron | 15.0% |
| !!! | TATCATTTCTATACTTTTTA+AGG | - | chr8_3:29309683-29309702 | None:intergenic | 15.0% |
| !! | TTATTAGTAAGTAGTTAATT+AGG | + | chr8_3:29310456-29310475 | Msa1285360:intron | 15.0% |
| !! | TTAAGTAGATTATTAATAAG+TGG | + | chr8_3:29310480-29310499 | Msa1285360:intron | 15.0% |
| !!! | TTCTCTTTATTTGTATATAA+AGG | + | chr8_3:29310528-29310547 | Msa1285360:intron | 15.0% |
| !!! | TCTCTTTATTTGTATATAAA+GGG | + | chr8_3:29310529-29310548 | Msa1285360:intron | 15.0% |
| !! | ACATTATATTGAAATATGAT+TGG | + | chr8_3:29312134-29312153 | Msa1285360:intron | 15.0% |
| !! | CATTATATTGAAATATGATT+GGG | + | chr8_3:29312135-29312154 | Msa1285360:intron | 15.0% |
| !!! | ATTTTAAGTAAGCAAATTTA+TGG | - | chr8_3:29312826-29312845 | None:intergenic | 15.0% |
| !! | GAAAACCAAAGAATAAATAT+TGG | + | chr8_3:29309298-29309317 | Msa1285360:intron | 20.0% |
| !!! | ATTTGGTATTATTTTTTGTC+GGG | + | chr8_3:29309431-29309450 | Msa1285360:intron | 20.0% |
| !! | ATTATAATTGTTAACATGCA+AGG | + | chr8_3:29309539-29309558 | Msa1285360:intron | 20.0% |
| !!! | TTTTGATTTTAGTGATCTTT+TGG | + | chr8_3:29309577-29309596 | Msa1285360:intron | 20.0% |
| !! | TTCAAAGAATTGTAAAGTAA+AGG | - | chr8_3:29310205-29310224 | None:intergenic | 20.0% |
| !! | TTCATAAACACTTCATATTT+GGG | - | chr8_3:29310386-29310405 | None:intergenic | 20.0% |
| !! | TTTCATAAACACTTCATATT+TGG | - | chr8_3:29310387-29310406 | None:intergenic | 20.0% |
| !!! | AAATATGAAGTGTTTATGAA+AGG | + | chr8_3:29310386-29310405 | Msa1285360:intron | 20.0% |
| !!! | CTCTTTATTTGTATATAAAG+GGG | + | chr8_3:29310530-29310549 | Msa1285360:intron | 20.0% |
| !! | AAACAGTGATTAAAGAAAAT+AGG | - | chr8_3:29310716-29310735 | None:intergenic | 20.0% |
| !! | TAAATGATTAAACAGTAAGA+GGG | - | chr8_3:29310774-29310793 | None:intergenic | 20.0% |
| !! | ATAAATGATTAAACAGTAAG+AGG | - | chr8_3:29310775-29310794 | None:intergenic | 20.0% |
| !! | GTTAAAAGTAAACTGTAAAA+GGG | - | chr8_3:29311343-29311362 | None:intergenic | 20.0% |
| !! | AGTTAAAAGTAAACTGTAAA+AGG | - | chr8_3:29311344-29311363 | None:intergenic | 20.0% |
| !! | ATAATGGTTGAATTATATGA+TGG | - | chr8_3:29311500-29311519 | None:intergenic | 20.0% |
| !! | TAGAAATTCATCTTATAGAA+AGG | + | chr8_3:29311641-29311660 | Msa1285360:intron | 20.0% |
| !!! | ATCTTATAGAAAGGATTTTT+TGG | + | chr8_3:29311650-29311669 | Msa1285360:intron | 20.0% |
| !! | CATAGAAAAATTCTTATAAG+TGG | + | chr8_3:29312712-29312731 | Msa1285360:exon | 20.0% |
| !!! | AAAAATAGCTCTTTATTTCT+AGG | - | chr8_3:29312761-29312780 | None:intergenic | 20.0% |
| ! | TCAGTCCAATATTTATTCTT+TGG | - | chr8_3:29309306-29309325 | None:intergenic | 25.0% |
| !! | ATTGATCAAGGAAAGATTTT+GGG | - | chr8_3:29309842-29309861 | None:intergenic | 25.0% |
| !! | AATTGATCAAGGAAAGATTT+TGG | - | chr8_3:29309843-29309862 | None:intergenic | 25.0% |
| ! | AAATCTTTCCTTGATCAATT+TGG | + | chr8_3:29309843-29309862 | Msa1285360:intron | 25.0% |
| ! | CTATTGCAATGAAAATTAAG+AGG | - | chr8_3:29310123-29310142 | None:intergenic | 25.0% |
| ! | AAGAATTGTAAAGTAAAGGT+GGG | - | chr8_3:29310201-29310220 | None:intergenic | 25.0% |
| ! | AAAGAATTGTAAAGTAAAGG+TGG | - | chr8_3:29310202-29310221 | None:intergenic | 25.0% |
| ! | CAAAGAACAACTTTATTGAT+AGG | + | chr8_3:29310314-29310333 | Msa1285360:intron | 25.0% |
| ! | TCATAAACACTTCATATTTG+GGG | - | chr8_3:29310385-29310404 | None:intergenic | 25.0% |
| ! | TCACTAGTAAACTTAATTAC+TGG | - | chr8_3:29310425-29310444 | None:intergenic | 25.0% |
| ! | AGTAATTAAGTTTACTAGTG+AGG | + | chr8_3:29310424-29310443 | Msa1285360:intron | 25.0% |
| ! | TTCTAGTATATAACCCTAAT+GGG | - | chr8_3:29310506-29310525 | None:intergenic | 25.0% |
| ! | ATTCTAGTATATAACCCTAA+TGG | - | chr8_3:29310507-29310526 | None:intergenic | 25.0% |
| ! | GAAACTATGAATTAACAGTA+AGG | - | chr8_3:29310752-29310771 | None:intergenic | 25.0% |
| ! | AAAGACTTTAAATTCTCTCA+GGG | - | chr8_3:29310912-29310931 | None:intergenic | 25.0% |
| ! | AAAAGACTTTAAATTCTCTC+AGG | - | chr8_3:29310913-29310932 | None:intergenic | 25.0% |
| !!! | TTCCATTTTTGTCAACAAAA+TGG | - | chr8_3:29310973-29310992 | None:intergenic | 25.0% |
| ! | TGACAAAAATGGAATATAAG+AGG | + | chr8_3:29310979-29310998 | Msa1285360:intron | 25.0% |
| ! | GACAAAAATGGAATATAAGA+GGG | + | chr8_3:29310980-29310999 | Msa1285360:intron | 25.0% |
| ! | TGTTGCAAAATAAAATGAAG+TGG | + | chr8_3:29311050-29311069 | Msa1285360:intron | 25.0% |
| !!! | ATATTGATAATGCTAGAGAT+TGG | + | chr8_3:29311229-29311248 | Msa1285360:intron | 25.0% |
| ! | TGATGCAATTATTGAAGATA+TGG | + | chr8_3:29311254-29311273 | Msa1285360:intron | 25.0% |
| ! | TGTTCACAATTATCAATACA+AGG | + | chr8_3:29311380-29311399 | Msa1285360:intron | 25.0% |
| !! | TGATCACAGATTAGTTATAA+TGG | - | chr8_3:29311516-29311535 | None:intergenic | 25.0% |
| !!! | AAATTGGCTCTAAAGTTAAA+AGG | - | chr8_3:29311553-29311572 | None:intergenic | 25.0% |
| !!! | TTTTAACTTTAGAGCCAATT+TGG | + | chr8_3:29311552-29311571 | Msa1285360:intron | 25.0% |
| !!! | TTTAACTTTAGAGCCAATTT+GGG | + | chr8_3:29311553-29311572 | Msa1285360:intron | 25.0% |
| ! | ATACATTGATGTATTGCATT+TGG | + | chr8_3:29311746-29311765 | Msa1285360:intron | 25.0% |
| ! | TACATTGATGTATTGCATTT+GGG | + | chr8_3:29311747-29311766 | Msa1285360:intron | 25.0% |
| ! | ATCCATAATTTCTGTGTATT+TGG | + | chr8_3:29311874-29311893 | Msa1285360:intron | 25.0% |
| ! | AACCAAATACACAGAAATTA+TGG | - | chr8_3:29311879-29311898 | None:intergenic | 25.0% |
| !!! | TATATATATGGAAAGTGTTC+TGG | - | chr8_3:29312070-29312089 | None:intergenic | 25.0% |
| ! | ACTACACAAGTGTATATATA+TGG | - | chr8_3:29312082-29312101 | None:intergenic | 25.0% |
| ! | ATTTCAACATTGTTCATGAT+TGG | + | chr8_3:29312274-29312293 | Msa1285360:intron | 25.0% |
| ! | TTGCTAGTTCATCAATTATA+GGG | - | chr8_3:29312526-29312545 | None:intergenic | 25.0% |
| ! | ATTGCTAGTTCATCAATTAT+AGG | - | chr8_3:29312527-29312546 | None:intergenic | 25.0% |
| ! | ATTTATGGAAACATGATACA+TGG | - | chr8_3:29312811-29312830 | None:intergenic | 25.0% |
| TAGATATTAGTGTTTGGAGA+AGG | - | chr8_3:29308946-29308965 | None:intergenic | 30.0% | |
| ! | GATAATGAGTTGGACTAATT+TGG | + | chr8_3:29309414-29309433 | Msa1285360:intron | 30.0% |
| AAGTGATTCAAACTAACAGA+AGG | - | chr8_3:29309870-29309889 | None:intergenic | 30.0% | |
| ACTTAACAAAGTTTGCATGT+TGG | + | chr8_3:29309886-29309905 | Msa1285360:intron | 30.0% | |
| !!! | GATTTTTTCCTAGAGGAATT+AGG | - | chr8_3:29310266-29310285 | None:intergenic | 30.0% |
| !!! | TTCTCTAGATTTTTTCCTAG+AGG | - | chr8_3:29310273-29310292 | None:intergenic | 30.0% |
| !!! | TGTTCTTTGTTTGTTTTGCA+AGG | - | chr8_3:29310303-29310322 | None:intergenic | 30.0% |
| ! | AACTAATGATAAGGGTATGA+TGG | + | chr8_3:29310354-29310373 | Msa1285360:intron | 30.0% |
| ! | ACTAATGATAAGGGTATGAT+GGG | + | chr8_3:29310355-29310374 | Msa1285360:intron | 30.0% |
| ! | ATGAAGTGTTTATGAAAGGA+AGG | + | chr8_3:29310390-29310409 | Msa1285360:intron | 30.0% |
| TTATTAATAAGTGGCCCATT+AGG | + | chr8_3:29310489-29310508 | Msa1285360:intron | 30.0% | |
| TATTAATAAGTGGCCCATTA+GGG | + | chr8_3:29310490-29310509 | Msa1285360:intron | 30.0% | |
| GTATATAAAGGGGAATTCTT+AGG | + | chr8_3:29310540-29310559 | Msa1285360:intron | 30.0% | |
| ! | ACAGATTGAGTTTTCTGTTT+AGG | + | chr8_3:29310577-29310596 | Msa1285360:intron | 30.0% |
| ! | CAGATTGAGTTTTCTGTTTA+GGG | + | chr8_3:29310578-29310597 | Msa1285360:intron | 30.0% |
| AAGCATGATGAGATACTAAT+TGG | - | chr8_3:29310821-29310840 | None:intergenic | 30.0% | |
| AACTTGACTAATGACTACTA+TGG | - | chr8_3:29310848-29310867 | None:intergenic | 30.0% | |
| AGTAGTCATTAGTCAAGTTA+TGG | + | chr8_3:29310849-29310868 | Msa1285360:intron | 30.0% | |
| !!! | AGTCAAGTTATGGTTTTTTG+AGG | + | chr8_3:29310859-29310878 | Msa1285360:intron | 30.0% |
| ACATCAAAAGGGTGAAAATA+TGG | + | chr8_3:29310944-29310963 | Msa1285360:intron | 30.0% | |
| ! | GACCATTTTGTTGACAAAAA+TGG | + | chr8_3:29310968-29310987 | Msa1285360:intron | 30.0% |
| TTTAATGAGAGGGAAACTAA+TGG | + | chr8_3:29311019-29311038 | Msa1285360:intron | 30.0% | |
| TTAATGAGAGGGAAACTAAT+GGG | + | chr8_3:29311020-29311039 | Msa1285360:intron | 30.0% | |
| TAAAATGAAGTGGTGATCAT+TGG | + | chr8_3:29311060-29311079 | Msa1285360:intron | 30.0% | |
| !! | TTACACAGCATTGATCAATT+TGG | - | chr8_3:29311191-29311210 | None:intergenic | 30.0% |
| TTATTGAAGATATGGTTAGC+TGG | + | chr8_3:29311262-29311281 | Msa1285360:intron | 30.0% | |
| ! | ACCATTTTATCCATGGATAA+TGG | + | chr8_3:29311420-29311439 | Msa1285360:intron | 30.0% |
| TCCATTATCCATGGATAAAA+TGG | - | chr8_3:29311424-29311443 | None:intergenic | 30.0% | |
| ! | TTTCTAGTCCATCATTAGAT+TGG | - | chr8_3:29311627-29311646 | None:intergenic | 30.0% |
| ! | CGATCTTGATAACTTAAACA+TGG | + | chr8_3:29311714-29311733 | Msa1285360:intron | 30.0% |
| TGATGAAGTTTCAATAGCAT+TGG | + | chr8_3:29311796-29311815 | Msa1285360:intron | 30.0% | |
| ACACAGAAATTATGGATCAT+GGG | - | chr8_3:29311871-29311890 | None:intergenic | 30.0% | |
| TACACAGAAATTATGGATCA+TGG | - | chr8_3:29311872-29311891 | None:intergenic | 30.0% | |
| AAGTTCATTCAATCAATGCA+AGG | - | chr8_3:29311904-29311923 | None:intergenic | 30.0% | |
| CAATAACAATACAGTGACAT+TGG | + | chr8_3:29311939-29311958 | Msa1285360:intron | 30.0% | |
| TACCTCAAAAATCAATACAC+TGG | - | chr8_3:29312010-29312029 | None:intergenic | 30.0% | |
| ! | ATTGTCCAATCATCTTTTTG+GGG | - | chr8_3:29312176-29312195 | None:intergenic | 30.0% |
| ! | GATTGTCCAATCATCTTTTT+GGG | - | chr8_3:29312177-29312196 | None:intergenic | 30.0% |
| ! | AGATTGTCCAATCATCTTTT+TGG | - | chr8_3:29312178-29312197 | None:intergenic | 30.0% |
| TCACTGATAGATGTTAAACT+AGG | + | chr8_3:29312201-29312220 | Msa1285360:intron | 30.0% | |
| AATTGCACAAACAAGCAAAT+AGG | - | chr8_3:29312232-29312251 | None:intergenic | 30.0% | |
| GTCTGCAGAAAATTATCATT+TGG | - | chr8_3:29312321-29312340 | None:intergenic | 30.0% | |
| TGCTAGTTCATCAATTATAG+GGG | - | chr8_3:29312525-29312544 | None:intergenic | 30.0% | |
| GAACTAGCAATACAATATAC+TGG | + | chr8_3:29312536-29312555 | Msa1285360:CDS | 30.0% | |
| ! | TCTTTGAAGATCATAACTGT+CGG | - | chr8_3:29312635-29312654 | None:intergenic | 30.0% |
| ACAGTTATGATCTTCAAAGA+TGG | + | chr8_3:29312635-29312654 | Msa1285360:CDS | 30.0% | |
| GCATCTGATAAAAACTATAC+AGG | - | chr8_3:29312862-29312881 | None:intergenic | 30.0% | |
| AAACATGCAAATGTCACAGA+AGG | + | chr8_3:29309916-29309935 | Msa1285360:intron | 35.0% | |
| TCCACACAAAAGTAAAGTTG+TGG | + | chr8_3:29309942-29309961 | Msa1285360:intron | 35.0% | |
| !! | TCCACAACTTTACTTTTGTG+TGG | - | chr8_3:29309946-29309965 | None:intergenic | 35.0% |
| ACACAAAAGTAAAGTTGTGG+AGG | + | chr8_3:29309945-29309964 | Msa1285360:intron | 35.0% | |
| ! | TGAACACTGATGTTTAGAGT+TGG | + | chr8_3:29309976-29309995 | Msa1285360:intron | 35.0% |
| ! | GAACACTGATGTTTAGAGTT+GGG | + | chr8_3:29309977-29309996 | Msa1285360:intron | 35.0% |
| ! | AACACTGATGTTTAGAGTTG+GGG | + | chr8_3:29309978-29309997 | Msa1285360:intron | 35.0% |
| !! | CAATTTGTATCAGTGGATTG+TGG | + | chr8_3:29310004-29310023 | Msa1285360:intron | 35.0% |
| AATTAAGAGGTCTCAACGTA+AGG | - | chr8_3:29310110-29310129 | None:intergenic | 35.0% | |
| TCATTGCAATAGCTTGACAA+CGG | + | chr8_3:29310131-29310150 | Msa1285360:intron | 35.0% | |
| AATTGTAAAGTAAAGGTGGG+TGG | - | chr8_3:29310198-29310217 | None:intergenic | 35.0% | |
| TAGAACTTCCTAATTCCTCT+AGG | + | chr8_3:29310255-29310274 | Msa1285360:intron | 35.0% | |
| TGAGAAGGCAACTAATGATA+AGG | + | chr8_3:29310345-29310364 | Msa1285360:intron | 35.0% | |
| GAGAAGGCAACTAATGATAA+GGG | + | chr8_3:29310346-29310365 | Msa1285360:intron | 35.0% | |
| ! | GGGAATTCTTAGGAGTTTTA+GGG | + | chr8_3:29310550-29310569 | Msa1285360:intron | 35.0% |
| TGACTAATGACTACTATGGA+TGG | - | chr8_3:29310844-29310863 | None:intergenic | 35.0% | |
| TCCTAACTCAACACATCAAA+AGG | + | chr8_3:29310932-29310951 | Msa1285360:intron | 35.0% | |
| CCTAACTCAACACATCAAAA+GGG | + | chr8_3:29310933-29310952 | Msa1285360:intron | 35.0% | |
| ! | GATATGGTTAGCTGGTTATT+AGG | + | chr8_3:29311270-29311289 | Msa1285360:intron | 35.0% |
| GAGTATTAGTTACTAGCTAG+TGG | + | chr8_3:29311292-29311311 | Msa1285360:intron | 35.0% | |
| GTACATCAAAGCCTATCTAT+AGG | - | chr8_3:29311321-29311340 | None:intergenic | 35.0% | |
| CCATGGATAAAATGGTGAAA+AGG | - | chr8_3:29311416-29311435 | None:intergenic | 35.0% | |
| ! | CCTTTTCACCATTTTATCCA+TGG | + | chr8_3:29311413-29311432 | Msa1285360:intron | 35.0% |
| ! | ACAATTGCTGTTGAGAAACA+TGG | - | chr8_3:29311449-29311468 | None:intergenic | 35.0% |
| TCAGTCAGCATAGTAAGATA+TGG | - | chr8_3:29311984-29312003 | None:intergenic | 35.0% | |
| !!! | GTCCAGTGTATTGATTTTTG+AGG | + | chr8_3:29312005-29312024 | Msa1285360:intron | 35.0% |
| ACTAAGCACAAAACTCAATG+CGG | - | chr8_3:29312037-29312056 | None:intergenic | 35.0% | |
| !! | GAGTTTTGTGCTTAGTTAGA+AGG | + | chr8_3:29312041-29312060 | Msa1285360:intron | 35.0% |
| !! | ATCTTTTTGGGGGTTACAAA+CGG | - | chr8_3:29312165-29312184 | None:intergenic | 35.0% |
| ! | TTGTCCAATCATCTTTTTGG+GGG | - | chr8_3:29312175-29312194 | None:intergenic | 35.0% |
| ! | TTGGTAGTATCAAACTCAGA+TGG | + | chr8_3:29312293-29312312 | Msa1285360:intron | 35.0% |
| AAGTGATTGCCAATTTGCAT+CGG | - | chr8_3:29312432-29312451 | None:intergenic | 35.0% | |
| ! | CTTTGAAGATCATAACTGTC+GGG | - | chr8_3:29312634-29312653 | None:intergenic | 35.0% |
| GAGAAAAAAGACGCAGTTAT+TGG | + | chr8_3:29312659-29312678 | Msa1285360:CDS | 35.0% | |
| AGAAGGAACAAAAACGTGTG+TGG | - | chr8_3:29308929-29308948 | None:intergenic | 40.0% | |
| CACTTTCTTTCAGTTTCCGA+TGG | + | chr8_3:29309016-29309035 | Msa1285360:exon | 40.0% | |
| AAACTGACCATCATCAACAG+CGG | - | chr8_3:29309243-29309262 | None:intergenic | 40.0% | |
| CAGAAGGACCAAATTGATCA+AGG | - | chr8_3:29309854-29309873 | None:intergenic | 40.0% | |
| ! | ACACTGATGTTTAGAGTTGG+GGG | + | chr8_3:29309979-29309998 | Msa1285360:intron | 40.0% |
| AGGAAACAGCTTCATGGATT+TGG | - | chr8_3:29310090-29310109 | None:intergenic | 40.0% | |
| AACGTAAGGAAACAGCTTCA+TGG | - | chr8_3:29310096-29310115 | None:intergenic | 40.0% | |
| CATTAGTTGCCTTCTCATGT+GGG | - | chr8_3:29310342-29310361 | None:intergenic | 40.0% | |
| TCATTAGTTGCCTTCTCATG+TGG | - | chr8_3:29310343-29310362 | None:intergenic | 40.0% | |
| ! | GGGGAATTCTTAGGAGTTTT+AGG | + | chr8_3:29310549-29310568 | Msa1285360:intron | 40.0% |
| ! | CCCTTTTGATGTGTTGAGTT+AGG | - | chr8_3:29310936-29310955 | None:intergenic | 40.0% |
| AGTGGTGATCATTGGAAGAA+AGG | + | chr8_3:29311068-29311087 | Msa1285360:intron | 40.0% | |
| !! | CTGGTCTTAGTCACTTAAGA+GGG | - | chr8_3:29311160-29311179 | None:intergenic | 40.0% |
| AACATGGCATCCATTATCCA+TGG | - | chr8_3:29311433-29311452 | None:intergenic | 40.0% | |
| CTAGTCCATCATTAGATTGG+AGG | - | chr8_3:29311624-29311643 | None:intergenic | 40.0% | |
| !! | TCTTTTTGGGGGTTACAAAC+GGG | - | chr8_3:29312164-29312183 | None:intergenic | 40.0% |
| GTAACCCCCAAAAAGATGAT+TGG | + | chr8_3:29312168-29312187 | Msa1285360:intron | 40.0% | |
| !!! | TCCCGTTTTGGTTGAATTCT+GGG | + | chr8_3:29312469-29312488 | Msa1285360:CDS | 40.0% |
| AGCCCAGAATTCAACCAAAA+CGG | - | chr8_3:29312474-29312493 | None:intergenic | 40.0% | |
| !! | CTTGATGTCAGTGTTGACTT+GGG | - | chr8_3:29312692-29312711 | None:intergenic | 40.0% |
| GGAAACATGATACATGGACT+TGG | - | chr8_3:29312805-29312824 | None:intergenic | 40.0% | |
| GTGTGTGGATGAAGATGATG+TGG | - | chr8_3:29308914-29308933 | None:intergenic | 45.0% | |
| TGAGTGGAGAAAATGGGTCT+GGG | - | chr8_3:29309161-29309180 | None:intergenic | 45.0% | |
| GTGGAGTGAGTGGAGAAAAT+GGG | - | chr8_3:29309167-29309186 | None:intergenic | 45.0% | |
| AGTGGAGTGAGTGGAGAAAA+TGG | - | chr8_3:29309168-29309187 | None:intergenic | 45.0% | |
| GCTAGCAATTCTTGAAGCAG+TGG | - | chr8_3:29309186-29309205 | None:intergenic | 45.0% | |
| GTTCCTCTGCGATAATGAGT+TGG | + | chr8_3:29309404-29309423 | Msa1285360:intron | 45.0% | |
| AGTCCAACTCATTATCGCAG+AGG | - | chr8_3:29309410-29309429 | None:intergenic | 45.0% | |
| ! | GGGGGTACAATTTGTATCAG+TGG | + | chr8_3:29309997-29310016 | Msa1285360:intron | 45.0% |
| ! | AACGGTGTCAACAGTGGTTT+GGG | + | chr8_3:29310149-29310168 | Msa1285360:intron | 45.0% |
| ACGCTTACTGAGATTCTCGA+GGG | - | chr8_3:29310229-29310248 | None:intergenic | 45.0% | |
| TGATAGGATCCCACATGAGA+AGG | + | chr8_3:29310330-29310349 | Msa1285360:intron | 45.0% | |
| ! | TTTCTGTTTAGGGCCAGAGT+AGG | + | chr8_3:29310588-29310607 | Msa1285360:intron | 45.0% |
| GATTCCTCTCTGAGTTGTGT+CGG | + | chr8_3:29310610-29310629 | Msa1285360:intron | 45.0% | |
| !! | GCTGGTCTTAGTCACTTAAG+AGG | - | chr8_3:29311161-29311180 | None:intergenic | 45.0% |
| AAGTGACTAAGACCAGCAGA+TGG | + | chr8_3:29311164-29311183 | Msa1285360:intron | 45.0% | |
| GATCAATTTGGTCCATCTGC+TGG | - | chr8_3:29311179-29311198 | None:intergenic | 45.0% | |
| ! | GCTAGTGGATGCCTATAGAT+AGG | + | chr8_3:29311307-29311326 | Msa1285360:intron | 45.0% |
| TAGAGCCAATTTGGGAGAGT+AGG | + | chr8_3:29311561-29311580 | Msa1285360:intron | 45.0% | |
| CAGTTCCTACTCTCCCAAAT+TGG | - | chr8_3:29311569-29311588 | None:intergenic | 45.0% | |
| GCAAGCCTCCAATCTAATGA+TGG | + | chr8_3:29311616-29311635 | Msa1285360:intron | 45.0% | |
| ! | CAATTTGCATCGGTGATAGC+AGG | - | chr8_3:29312422-29312441 | None:intergenic | 45.0% |
| CTGCTATCACCGATGCAAAT+TGG | + | chr8_3:29312420-29312439 | Msa1285360:CDS | 45.0% | |
| ! | CGAATCTGAATCTCCCGTTT+TGG | + | chr8_3:29312457-29312476 | Msa1285360:CDS | 45.0% |
| !!! | CTCCCGTTTTGGTTGAATTC+TGG | + | chr8_3:29312468-29312487 | Msa1285360:CDS | 45.0% |
| GCCCAGAATTCAACCAAAAC+GGG | - | chr8_3:29312473-29312492 | None:intergenic | 45.0% | |
| ATAGGGGTGATCATTCTGCA+GGG | - | chr8_3:29312509-29312528 | None:intergenic | 45.0% | |
| TATAGGGGTGATCATTCTGC+AGG | - | chr8_3:29312510-29312529 | None:intergenic | 45.0% | |
| GATACTTCGAATTCCGTACC+GGG | - | chr8_3:29312612-29312631 | None:intergenic | 45.0% | |
| GGATACTTCGAATTCCGTAC+CGG | - | chr8_3:29312613-29312632 | None:intergenic | 45.0% | |
| !! | GCTTGATGTCAGTGTTGACT+TGG | - | chr8_3:29312693-29312712 | None:intergenic | 45.0% |
| !!! | AATTTGAATAATTTTTATAA+CGG | + | chr8_3:29312384-29312403 | Msa1285360:intron | 5.0% |
| !! | GATTCGATGATGGTGGCCAT+CGG | - | chr8_3:29309035-29309054 | None:intergenic | 50.0% |
| AGAAAATGGGTCTGGGCTTG+GGG | - | chr8_3:29309154-29309173 | None:intergenic | 50.0% | |
| GAGAAAATGGGTCTGGGCTT+GGG | - | chr8_3:29309155-29309174 | None:intergenic | 50.0% | |
| GTGAGTGGAGAAAATGGGTC+TGG | - | chr8_3:29309162-29309181 | None:intergenic | 50.0% | |
| TCTTGAAGCAGTGGAGTGAG+TGG | - | chr8_3:29309177-29309196 | None:intergenic | 50.0% | |
| CACACACTACGCGTGAATTG+CGG | - | chr8_3:29309208-29309227 | None:intergenic | 50.0% | |
| CAATTCACGCGTAGTGTGTG+AGG | + | chr8_3:29309208-29309227 | Msa1285360:CDS | 50.0% | |
| ! | CAGGATACCGCTGTTGATGA+TGG | + | chr8_3:29309233-29309252 | Msa1285360:CDS | 50.0% |
| ! | CTTGACAACGGTGTCAACAG+TGG | + | chr8_3:29310143-29310162 | Msa1285360:intron | 50.0% |
| ! | CAACGGTGTCAACAGTGGTT+TGG | + | chr8_3:29310148-29310167 | Msa1285360:intron | 50.0% |
| CGCTTACTGAGATTCTCGAG+GGG | - | chr8_3:29310228-29310247 | None:intergenic | 50.0% | |
| GACGCTTACTGAGATTCTCG+AGG | - | chr8_3:29310230-29310249 | None:intergenic | 50.0% | |
| CTCAGAGAGGAATCCTACTC+TGG | - | chr8_3:29310604-29310623 | None:intergenic | 50.0% | |
| TTGTGTCGGAGCTTTGCTCT+GGG | + | chr8_3:29310624-29310643 | Msa1285360:intron | 50.0% | |
| GGGAGAGTAGGAACTGATCT+TGG | + | chr8_3:29311573-29311592 | Msa1285360:intron | 50.0% | |
| TGGTTGAATTCTGGGCTCCA+TGG | + | chr8_3:29312477-29312496 | Msa1285360:CDS | 50.0% | |
| AGCAGTCGAAGGACTCTCAT+CGG | - | chr8_3:29312588-29312607 | None:intergenic | 50.0% | |
| ! | GGCGATGGATTCGATGATGG+TGG | - | chr8_3:29309042-29309061 | None:intergenic | 55.0% |
| ! | GACGGCGATGGATTCGATGA+TGG | - | chr8_3:29309045-29309064 | None:intergenic | 55.0% |
| !! | TGATGGCGGAAGAAGTGCGA+GGG | - | chr8_3:29309070-29309089 | None:intergenic | 55.0% |
| AGAACTCCGGAGTGCAACGA+CGG | - | chr8_3:29309096-29309115 | None:intergenic | 55.0% | |
| GGAGAAAATGGGTCTGGGCT+TGG | - | chr8_3:29309156-29309175 | None:intergenic | 55.0% | |
| AGCTCCGACACAACTCAGAG+AGG | - | chr8_3:29310617-29310636 | None:intergenic | 55.0% | |
| GTTGTGTCGGAGCTTTGCTC+TGG | + | chr8_3:29310623-29310642 | Msa1285360:intron | 55.0% | |
| GAATTCTGGGCTCCATGGTG+TGG | + | chr8_3:29312482-29312501 | Msa1285360:CDS | 55.0% | |
| ATTCTGCAGGGACCACACCA+TGG | - | chr8_3:29312497-29312516 | None:intergenic | 55.0% | |
| AGAGTCCTTCGACTGCTACC+CGG | + | chr8_3:29312591-29312610 | Msa1285360:CDS | 55.0% | |
| ! | GGAAGAAGTGCGAGGGACGA+CGG | - | chr8_3:29309063-29309082 | None:intergenic | 60.0% |
| !! | GTGATGGCGGAAGAAGTGCG+AGG | - | chr8_3:29309071-29309090 | None:intergenic | 60.0% |
| TGCAACGACGGGAGTGATGG+CGG | - | chr8_3:29309084-29309103 | None:intergenic | 60.0% | |
| GAGTGCAACGACGGGAGTGA+TGG | - | chr8_3:29309087-29309106 | None:intergenic | 60.0% | |
| TCACTCCCGTCGTTGCACTC+CGG | + | chr8_3:29309087-29309106 | Msa1285360:CDS | 60.0% | |
| GAACTCCGGAGTGCAACGAC+GGG | - | chr8_3:29309095-29309114 | None:intergenic | 60.0% | |
| GGGGGAACTTGGGAGAACTC+CGG | - | chr8_3:29309109-29309128 | None:intergenic | 60.0% | |
| TCCCAAGTTCCCCCGTTACG+TGG | + | chr8_3:29309115-29309134 | Msa1285360:CDS | 60.0% | |
| ! | CCCACGTAACGGGGGAACTT+GGG | - | chr8_3:29309119-29309138 | None:intergenic | 60.0% |
| CCCAAGTTCCCCCGTTACGT+GGG | + | chr8_3:29309116-29309135 | Msa1285360:CDS | 60.0% | |
| ! | TGGGTCTGAGGCCCACGTAA+CGG | - | chr8_3:29309130-29309149 | None:intergenic | 60.0% |
| ATGGGTCTGGGCTTGGGGTT+GGG | - | chr8_3:29309149-29309168 | None:intergenic | 60.0% | |
| AATGGGTCTGGGCTTGGGGT+TGG | - | chr8_3:29309150-29309169 | None:intergenic | 60.0% | |
| ACGCGTAGTGTGTGAGGCTC+AGG | + | chr8_3:29309214-29309233 | Msa1285360:CDS | 60.0% | |
| CCTTCGACTGCTACCCGGTA+CGG | + | chr8_3:29312596-29312615 | Msa1285360:CDS | 60.0% | |
| ! | GCCCACGTAACGGGGGAACT+TGG | - | chr8_3:29309120-29309139 | None:intergenic | 65.0% |
| ! | GTCTGAGGCCCACGTAACGG+GGG | - | chr8_3:29309127-29309146 | None:intergenic | 65.0% |
| ! | GGTCTGAGGCCCACGTAACG+GGG | - | chr8_3:29309128-29309147 | None:intergenic | 65.0% |
| ! | GGGTCTGAGGCCCACGTAAC+GGG | - | chr8_3:29309129-29309148 | None:intergenic | 65.0% |
| TGGGCTTGGGGTTGGGTCTG+AGG | - | chr8_3:29309142-29309161 | None:intergenic | 65.0% | |
| CCGTACCGGGTAGCAGTCGA+AGG | - | chr8_3:29312599-29312618 | None:intergenic | 65.0% | |
| AGTGCGAGGGACGACGGCGA+TGG | - | chr8_3:29309057-29309076 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 29308897 | 29312968 | 29308897 | ID=Msa1285360;Name=Msa1285360 |
| chr8_3 | mRNA | 29308897 | 29312968 | 29308897 | ID=Msa1285360-mRNA-1;Parent=Msa1285360;Name=Msa1285360-mRNA-1;_AED=0.00;_eAED=0.00;_QI=138|1|1|1|1|1|2|238|177 |
| chr8_3 | exon | 29308897 | 29309254 | 29308897 | ID=Msa1285360-mRNA-1:exon:9778;Parent=Msa1285360-mRNA-1 |
| chr8_3 | exon | 29312417 | 29312968 | 29312417 | ID=Msa1285360-mRNA-1:exon:9779;Parent=Msa1285360-mRNA-1 |
| chr8_3 | five_prime_UTR | 29308897 | 29309034 | 29308897 | ID=Msa1285360-mRNA-1:five_prime_utr;Parent=Msa1285360-mRNA-1 |
| chr8_3 | CDS | 29309035 | 29309254 | 29309035 | ID=Msa1285360-mRNA-1:cds;Parent=Msa1285360-mRNA-1 |
| chr8_3 | CDS | 29312417 | 29312730 | 29312417 | ID=Msa1285360-mRNA-1:cds;Parent=Msa1285360-mRNA-1 |
| chr8_3 | three_prime_UTR | 29312731 | 29312968 | 29312731 | ID=Msa1285360-mRNA-1:three_prime_utr;Parent=Msa1285360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
