Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0536350 | XP_003604990.1 | 100.000 | 219 | 0 | 0 | 1 | 219 | 1 | 219 | 6.51e-162 | 456 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0536350 | sp|Q9MAS5|VA726_ARATH | 80.365 | 219 | 43 | 0 | 1 | 219 | 1 | 219 | 2.21e-132 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0536350 | G7JUL3 | 100.000 | 219 | 0 | 0 | 1 | 219 | 1 | 219 | 3.11e-162 | 456 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001550 | Msa0536350 | -0.806355 | 8.565708e-50 | -8.615850e-47 |
| Msa0001830 | Msa0536350 | 0.800231 | 1.588254e-48 | -8.615850e-47 |
| Msa0004480 | Msa0536350 | 0.832001 | 1.212705e-55 | -8.615850e-47 |
| Msa0036540 | Msa0536350 | 0.810662 | 1.030882e-50 | -8.615850e-47 |
| Msa0052780 | Msa0536350 | 0.809572 | 1.771060e-50 | -8.615850e-47 |
| Msa0067590 | Msa0536350 | -0.817101 | 3.926402e-52 | -8.615850e-47 |
| Msa0077370 | Msa0536350 | 0.809685 | 1.674821e-50 | -8.615850e-47 |
| Msa0081610 | Msa0536350 | -0.800255 | 1.570443e-48 | -8.615850e-47 |
| Msa0082420 | Msa0536350 | 0.805942 | 1.046417e-49 | -8.615850e-47 |
| Msa0089730 | Msa0536350 | 0.805862 | 1.087299e-49 | -8.615850e-47 |
| Msa0090510 | Msa0536350 | 0.831668 | 1.465341e-55 | -8.615850e-47 |
| Msa0097570 | Msa0536350 | 0.819749 | 9.862427e-53 | -8.615850e-47 |
| Msa0113370 | Msa0536350 | -0.817488 | 3.213809e-52 | -8.615850e-47 |
| Msa0120880 | Msa0536350 | 0.807332 | 5.322551e-50 | -8.615850e-47 |
| Msa0138900 | Msa0536350 | 0.819698 | 1.012919e-52 | -8.615850e-47 |
| Msa0138990 | Msa0536350 | -0.840322 | 9.323827e-58 | -8.615850e-47 |
| Msa0139670 | Msa0536350 | 0.803289 | 3.742971e-49 | -8.615850e-47 |
| Msa0140770 | Msa0536350 | -0.813761 | 2.173090e-51 | -8.615850e-47 |
| Msa0156760 | Msa0536350 | 0.811221 | 7.801434e-51 | -8.615850e-47 |
| Msa0173950 | Msa0536350 | -0.803256 | 3.802209e-49 | -8.615850e-47 |
| Msa0183910 | Msa0536350 | 0.826990 | 2.002897e-54 | -8.615850e-47 |
| Msa0220400 | Msa0536350 | -0.815664 | 8.233744e-52 | -8.615850e-47 |
| Msa0224130 | Msa0536350 | 0.805184 | 1.508844e-49 | -8.615850e-47 |
| Msa0370580 | Msa0536350 | -0.813945 | 1.979703e-51 | -8.615850e-47 |
| Msa0380400 | Msa0536350 | -0.820870 | 5.458057e-53 | -8.615850e-47 |
| Msa0385500 | Msa0536350 | 0.810132 | 1.341666e-50 | -8.615850e-47 |
| Msa0388360 | Msa0536350 | 0.802460 | 5.550861e-49 | -8.615850e-47 |
| Msa0389080 | Msa0536350 | -0.806078 | 9.796199e-50 | -8.615850e-47 |
| Msa0389210 | Msa0536350 | 0.807745 | 4.350336e-50 | -8.615850e-47 |
| Msa0476170 | Msa0536350 | -0.807418 | 5.103971e-50 | -8.615850e-47 |
| Msa0479760 | Msa0536350 | -0.804924 | 1.710416e-49 | -8.615850e-47 |
| Msa0254470 | Msa0536350 | 0.828334 | 9.526155e-55 | -8.615850e-47 |
| Msa0257490 | Msa0536350 | 0.812852 | 3.441235e-51 | -8.615850e-47 |
| Msa0265270 | Msa0536350 | 0.806589 | 7.644201e-50 | -8.615850e-47 |
| Msa0300280 | Msa0536350 | 0.804906 | 1.724908e-49 | -8.615850e-47 |
| Msa0317970 | Msa0536350 | 0.808034 | 3.776544e-50 | -8.615850e-47 |
| Msa0332190 | Msa0536350 | 0.805717 | 1.166404e-49 | -8.615850e-47 |
| Msa0519160 | Msa0536350 | 0.802356 | 5.833788e-49 | -8.615850e-47 |
| Msa0523430 | Msa0536350 | -0.807561 | 4.760683e-50 | -8.615850e-47 |
| Msa0527540 | Msa0536350 | 0.809695 | 1.666140e-50 | -8.615850e-47 |
| Msa0529000 | Msa0536350 | 0.806943 | 6.434938e-50 | -8.615850e-47 |
| Msa0536350 | Msa0545050 | 0.816233 | 6.146950e-52 | -8.615850e-47 |
| Msa0536350 | Msa0576080 | -0.801574 | 8.443320e-49 | -8.615850e-47 |
| Msa0536350 | Msa0576120 | -0.825923 | 3.597604e-54 | -8.615850e-47 |
| Msa0536350 | Msa0592330 | 0.845167 | 4.808443e-59 | -8.615850e-47 |
| Msa0536350 | Msa0626920 | 0.820197 | 7.790216e-53 | -8.615850e-47 |
| Msa0536350 | Msa0632420 | 0.821025 | 5.027016e-53 | -8.615850e-47 |
| Msa0536350 | Msa0665530 | -0.816560 | 5.194119e-52 | -8.615850e-47 |
| Msa0536350 | Msa0671170 | 0.960653 | 8.429583e-119 | -8.615850e-47 |
| Msa0536350 | Msa0671210 | 0.962504 | 5.896889e-121 | -8.615850e-47 |
| Msa0536350 | Msa0693750 | 0.844874 | 5.767652e-59 | -8.615850e-47 |
| Msa0536350 | Msa0694140 | 0.848840 | 4.741848e-60 | -8.615850e-47 |
| Msa0536350 | Msa0697680 | 0.816768 | 4.664448e-52 | -8.615850e-47 |
| Msa0536350 | Msa0709120 | 0.804576 | 2.021698e-49 | -8.615850e-47 |
| Msa0536350 | Msa0744640 | 0.843594 | 1.273085e-58 | -8.615850e-47 |
| Msa0536350 | Msa0796580 | -0.819513 | 1.116467e-52 | -8.615850e-47 |
| Msa0536350 | Msa0833950 | -0.826273 | 2.969808e-54 | -8.615850e-47 |
| Msa0536350 | Msa0841730 | 0.843688 | 1.201065e-58 | -8.615850e-47 |
| Msa0536350 | Msa0863990 | 0.804584 | 2.013561e-49 | -8.615850e-47 |
| Msa0536350 | Msa0870510 | 0.824340 | 8.513585e-54 | -8.615850e-47 |
| Msa0536350 | Msa0969380 | 0.814228 | 1.714568e-51 | -8.615850e-47 |
| Msa0536350 | Msa0969720 | 0.802861 | 4.588826e-49 | -8.615850e-47 |
| Msa0536350 | Msa0985180 | 0.808086 | 3.680462e-50 | -8.615850e-47 |
| Msa0536350 | Msa1039810 | 0.807411 | 5.122316e-50 | -8.615850e-47 |
| Msa0536350 | Msa1062040 | 0.805210 | 1.490100e-49 | -8.615850e-47 |
| Msa0536350 | Msa1085610 | -0.814989 | 1.163001e-51 | -8.615850e-47 |
| Msa0536350 | Msa1107200 | 0.802115 | 6.538065e-49 | -8.615850e-47 |
| Msa0536350 | Msa1128270 | 0.854033 | 1.611324e-61 | -8.615850e-47 |
| Msa0536350 | Msa1128280 | 0.839190 | 1.837499e-57 | -8.615850e-47 |
| Msa0536350 | Msa1165270 | 0.834690 | 2.590965e-56 | -8.615850e-47 |
| Msa0536350 | Msa1173150 | 0.819697 | 1.013693e-52 | -8.615850e-47 |
| Msa0536350 | Msa1176170 | 0.807485 | 4.939301e-50 | -8.615850e-47 |
| Msa0536350 | Msa1183140 | 0.836731 | 7.878824e-57 | -8.615850e-47 |
| Msa0536350 | Msa1207920 | -0.802507 | 5.428747e-49 | -8.615850e-47 |
| Msa0536350 | Msa1218160 | 0.809647 | 1.706391e-50 | -8.615850e-47 |
| Msa0536350 | Msa1221960 | 0.816825 | 4.530089e-52 | -8.615850e-47 |
| Msa0536350 | Msa1238600 | 0.801750 | 7.769455e-49 | -8.615850e-47 |
| Msa0536350 | Msa1265020 | 0.839955 | 1.162777e-57 | -8.615850e-47 |
| Msa0536350 | Msa1273620 | -0.804029 | 2.628451e-49 | -8.615850e-47 |
| Msa0536350 | Msa1277410 | 0.804355 | 2.248027e-49 | -8.615850e-47 |
| Msa0536350 | Msa1277780 | 0.819757 | 9.823274e-53 | -8.615850e-47 |
| Msa0536350 | Msa1285360 | -0.809915 | 1.494293e-50 | -8.615850e-47 |
| Msa0536350 | Msa1307160 | 0.830012 | 3.731633e-55 | -8.615850e-47 |
| Msa0536350 | Msa1309760 | 0.820762 | 5.779567e-53 | -8.615850e-47 |
| Msa0536350 | Msa1316360 | 0.801586 | 8.395481e-49 | -8.615850e-47 |
| Msa0536350 | Msa1316460 | 0.802279 | 6.049264e-49 | -8.615850e-47 |
| Msa0536350 | Msa1337850 | 0.828650 | 7.991551e-55 | -8.615850e-47 |
| Msa0536350 | Msa1342960 | -0.828492 | 8.722249e-55 | -8.615850e-47 |
| Msa0536350 | Msa1364080 | 0.800018 | 1.754681e-48 | -8.615850e-47 |
| Msa0536350 | Msa1364350 | -0.827063 | 1.924135e-54 | -8.615850e-47 |
| Msa0536350 | Msa1365430 | 0.815536 | 8.790930e-52 | -8.615850e-47 |
| Msa0536350 | Msa1376550 | -0.810762 | 9.810776e-51 | -8.615850e-47 |
| Msa0536350 | Msa1382380 | -0.802241 | 6.160653e-49 | -8.615850e-47 |
| Msa0536350 | Msa1383630 | 0.962515 | 5.710922e-121 | -8.615850e-47 |
| Msa0536350 | Msa1443620 | 0.817703 | 2.874517e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0536350 | MtrunA17_Chr4g0010271 | 100.000 | 219 | 0 | 0 | 1 | 219 | 1 | 219 | 5.99e-166 | 456 |
| Msa0536350 | MtrunA17_Chr1g0169861 | 78.995 | 219 | 46 | 0 | 1 | 219 | 51 | 269 | 2.50e-138 | 388 |
| Msa0536350 | MtrunA17_Chr7g0237561 | 84.018 | 219 | 35 | 0 | 1 | 219 | 1 | 219 | 1.72e-129 | 363 |
| Msa0536350 | MtrunA17_Chr2g0296021 | 71.233 | 219 | 63 | 0 | 1 | 219 | 1 | 219 | 1.10e-122 | 346 |
| Msa0536350 | MtrunA17_Chr4g0043521 | 79.275 | 193 | 40 | 0 | 3 | 195 | 5 | 197 | 3.93e-121 | 342 |
| Msa0536350 | MtrunA17_Chr2g0291651 | 74.419 | 215 | 55 | 0 | 2 | 216 | 6 | 220 | 5.40e-115 | 327 |
| Msa0536350 | MtrunA17_Chr7g0237521 | 75.385 | 195 | 48 | 0 | 1 | 195 | 1 | 195 | 1.39e-111 | 318 |
| Msa0536350 | MtrunA17_Chr1g0210521 | 56.303 | 238 | 85 | 1 | 1 | 219 | 1 | 238 | 7.10e-102 | 294 |
| Msa0536350 | MtrunA17_Chr4g0010211 | 95.370 | 108 | 5 | 0 | 64 | 171 | 3 | 110 | 1.90e-71 | 213 |
| Msa0536350 | MtrunA17_Chr1g0169851 | 69.178 | 146 | 30 | 1 | 57 | 187 | 8 | 153 | 4.04e-70 | 211 |
| Msa0536350 | MtrunA17_Chr5g0441741 | 39.151 | 212 | 126 | 3 | 6 | 216 | 3 | 212 | 1.50e-49 | 160 |
| Msa0536350 | MtrunA17_Chr4g0026121 | 36.279 | 215 | 134 | 3 | 5 | 218 | 2 | 214 | 4.33e-46 | 152 |
| Msa0536350 | MtrunA17_Chr4g0064371 | 33.180 | 217 | 136 | 5 | 6 | 216 | 3 | 216 | 6.54e-41 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0536350 | AT1G04760.2 | 80.365 | 219 | 43 | 0 | 1 | 219 | 1 | 219 | 2.25e-133 | 374 |
| Msa0536350 | AT1G04760.1 | 80.365 | 219 | 43 | 0 | 1 | 219 | 1 | 219 | 2.25e-133 | 374 |
| Msa0536350 | AT1G04750.1 | 83.105 | 219 | 37 | 0 | 1 | 219 | 1 | 219 | 3.29e-129 | 363 |
| Msa0536350 | AT2G32670.1 | 82.192 | 219 | 39 | 0 | 1 | 219 | 66 | 284 | 5.30e-129 | 365 |
| Msa0536350 | AT2G33120.1 | 83.105 | 219 | 37 | 0 | 1 | 219 | 1 | 219 | 1.24e-128 | 362 |
| Msa0536350 | AT2G33120.2 | 79.736 | 227 | 38 | 1 | 1 | 219 | 1 | 227 | 2.07e-125 | 354 |
| Msa0536350 | AT3G54300.3 | 56.723 | 238 | 84 | 2 | 1 | 219 | 1 | 238 | 8.02e-101 | 292 |
| Msa0536350 | AT3G54300.2 | 56.723 | 238 | 84 | 2 | 1 | 219 | 1 | 238 | 8.02e-101 | 292 |
| Msa0536350 | AT3G54300.1 | 56.723 | 238 | 84 | 2 | 1 | 219 | 1 | 238 | 8.02e-101 | 292 |
| Msa0536350 | AT2G33110.1 | 67.580 | 219 | 67 | 1 | 1 | 219 | 1 | 215 | 5.90e-97 | 281 |
| Msa0536350 | AT4G15780.1 | 70.391 | 179 | 52 | 1 | 1 | 178 | 1 | 179 | 2.49e-95 | 276 |
| Msa0536350 | AT2G33110.2 | 69.753 | 162 | 49 | 0 | 1 | 162 | 1 | 162 | 3.45e-85 | 251 |
| Msa0536350 | AT1G04750.2 | 84.397 | 141 | 22 | 0 | 79 | 219 | 1 | 141 | 3.06e-74 | 221 |
| Msa0536350 | AT1G04750.4 | 84.397 | 141 | 22 | 0 | 79 | 219 | 1 | 141 | 3.06e-74 | 221 |
| Msa0536350 | AT1G04750.3 | 84.397 | 141 | 22 | 0 | 79 | 219 | 1 | 141 | 3.06e-74 | 221 |
| Msa0536350 | AT5G11150.1 | 40.553 | 217 | 123 | 5 | 5 | 218 | 2 | 215 | 7.85e-53 | 169 |
| Msa0536350 | AT5G11150.2 | 40.553 | 217 | 123 | 5 | 5 | 218 | 2 | 215 | 1.45e-52 | 169 |
| Msa0536350 | AT5G22360.1 | 37.963 | 216 | 130 | 3 | 5 | 218 | 2 | 215 | 7.00e-51 | 164 |
| Msa0536350 | AT4G32150.1 | 38.498 | 213 | 128 | 3 | 5 | 216 | 2 | 212 | 2.37e-48 | 158 |
| Msa0536350 | AT2G25340.1 | 37.850 | 214 | 128 | 4 | 5 | 216 | 2 | 212 | 1.59e-43 | 145 |
| Msa0536350 | AT2G33120.3 | 88.372 | 86 | 10 | 0 | 134 | 219 | 52 | 137 | 3.87e-36 | 124 |
| Msa0536350 | AT3G24890.2 | 53.191 | 94 | 38 | 2 | 113 | 200 | 14 | 107 | 5.20e-25 | 95.5 |
| Msa0536350 | AT3G24890.1 | 53.125 | 64 | 26 | 1 | 113 | 176 | 14 | 73 | 2.18e-15 | 68.9 |
| Msa0536350 | AT3G24890.4 | 53.125 | 64 | 26 | 1 | 113 | 176 | 14 | 73 | 2.18e-15 | 68.9 |
| Msa0536350 | AT3G24890.3 | 53.125 | 64 | 26 | 1 | 113 | 176 | 14 | 73 | 2.18e-15 | 68.9 |
| Msa0536350 | AT3G24890.5 | 53.125 | 64 | 26 | 1 | 113 | 176 | 14 | 73 | 2.18e-15 | 68.9 |
Find 95 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTGTATTGTTTCATTTA+TGG | 0.065324 | 4_1:-13326019 | Msa0536350:three_prime_UTR |
| AAAAGTCTTAACAAAGAATT+TGG | 0.112791 | 4_1:-13328381 | Msa0536350:CDS |
| CTTTGCAGGCACAAGATTTC+AGG | 0.218031 | 4_1:-13326555 | Msa0536350:intron |
| GAGAGAGGTGGTGTCAAATT+TGG | 0.233821 | 4_1:+13329838 | None:intergenic |
| AGAATTGTCACTACATATAT+TGG | 0.236659 | 4_1:-13326385 | Msa0536350:three_prime_UTR |
| TTCAGCTTCCTCGTCGATAA+TGG | 0.292725 | 4_1:-13329511 | Msa0536350:CDS |
| ACCACATCTTTCTCCTCAAC+TGG | 0.295387 | 4_1:+13326521 | None:intergenic |
| GTTATTTGCAGGTTATTGAT+AGG | 0.304636 | 4_1:-13327130 | Msa0536350:intron |
| GTTAGGAAGGGAAGTGAATA+AGG | 0.319681 | 4_1:-13326276 | Msa0536350:three_prime_UTR |
| TGCATTTGCTCCTTCAACTT+TGG | 0.326828 | 4_1:+13328272 | None:intergenic |
| ATACGTTCAAGAAAAGCTAT+TGG | 0.353729 | 4_1:+13328459 | None:intergenic |
| CTCCGGTCACCACCAGGGTC+AGG | 0.379723 | 4_1:+13326073 | None:intergenic |
| TACCTCTGTAAGCGCCCTTT+CGG | 0.391076 | 4_1:-13326109 | Msa0536350:three_prime_UTR |
| ATCATTGATCTATAGCTTTG+TGG | 0.397799 | 4_1:-13329662 | Msa0536350:CDS |
| AACTCCCTGCTTCTAACAAC+AGG | 0.399581 | 4_1:-13329561 | Msa0536350:CDS |
| TTTGTTTATTAGACATTCAA+TGG | 0.402021 | 4_1:-13326315 | Msa0536350:three_prime_UTR |
| AACTGAGAACCTTCGCTCTC+AGG | 0.417900 | 4_1:-13327078 | Msa0536350:intron |
| GCCCTGACCCTGGTGGTGAC+CGG | 0.421928 | 4_1:-13326075 | Msa0536350:three_prime_UTR |
| GCAATATTGTGTGGAACATC+CGG | 0.431593 | 4_1:-13328252 | Msa0536350:CDS |
| TTATTTGCAGGTTATTGATA+GGG | 0.435162 | 4_1:-13327129 | Msa0536350:intron |
| GGCACAAGATTTCAGGCAGC+AGG | 0.435566 | 4_1:-13326548 | Msa0536350:CDS |
| GGGAGAGAAGATTGAGGTGT+TGG | 0.441727 | 4_1:-13327108 | Msa0536350:CDS |
| ATTCGGCTCCGGTCACCACC+AGG | 0.447582 | 4_1:+13326067 | None:intergenic |
| GCAAGTTTGCTAACTTCCTC+CGG | 0.449150 | 4_1:+13328233 | None:intergenic |
| TTGTGAATTGTGATCATTCA+TGG | 0.455075 | 4_1:-13329692 | Msa0536350:exon |
| GTAAACCTGTTGTTAGAAGC+AGG | 0.458806 | 4_1:+13329556 | None:intergenic |
| TGAAGTCAAAGGAGTTATGA+TGG | 0.459537 | 4_1:-13328189 | Msa0536350:CDS |
| CCAGGGTCAGGGCAGGCCTC+CGG | 0.467838 | 4_1:+13326085 | None:intergenic |
| AGAGAAGATTGAGGTGTTGG+TGG | 0.479742 | 4_1:-13327105 | Msa0536350:CDS |
| CTGTAAGCGCCCTTTCGGTC+CGG | 0.482777 | 4_1:-13326104 | Msa0536350:three_prime_UTR |
| CACAACCTTCCGAGGGGAAG+TGG | 0.483080 | 4_1:+13326184 | None:intergenic |
| CCGGAGGCCTGCCCTGACCC+TGG | 0.483325 | 4_1:-13326085 | Msa0536350:three_prime_UTR |
| ATTGTTCTTTCTGTGTGCCA+TGG | 0.487473 | 4_1:-13326439 | Msa0536350:CDS |
| ATCTATAGCTTTGTGGCTCG+TGG | 0.490761 | 4_1:-13329655 | Msa0536350:CDS |
| AGTTTAGGTGGATTCGGCTC+CGG | 0.492682 | 4_1:+13326056 | None:intergenic |
| TGGCTCAGTTGGTAAGGAAC+GGG | 0.493822 | 4_1:-13326207 | Msa0536350:three_prime_UTR |
| ATGCTTTAGACCAAAGTTGA+AGG | 0.496438 | 4_1:-13328282 | Msa0536350:intron |
| TGATAGGGGAGAGAAGATTG+AGG | 0.498472 | 4_1:-13327114 | Msa0536350:CDS |
| AAAGTCTTAACAAAGAATTT+GGG | 0.498770 | 4_1:-13328380 | Msa0536350:intron |
| AAAATGATGAAGAAATGAAA+AGG | 0.501975 | 4_1:+13329780 | None:intergenic |
| CCAACACACGTTGGCTCAGT+TGG | 0.513561 | 4_1:-13326218 | Msa0536350:three_prime_UTR |
| GTCACCACCAGGGTCAGGGC+AGG | 0.516535 | 4_1:+13326078 | None:intergenic |
| TATTTGCAGGTTATTGATAG+GGG | 0.520975 | 4_1:-13327128 | Msa0536350:intron |
| GGAAGTGAATAAGGTGTGGT+AGG | 0.525716 | 4_1:-13326267 | Msa0536350:three_prime_UTR |
| ACACGTTGGCTCAGTTGGTA+AGG | 0.528013 | 4_1:-13326213 | Msa0536350:three_prime_UTR |
| TCCGGTCACCACCAGGGTCA+GGG | 0.532476 | 4_1:+13326074 | None:intergenic |
| TGATGTGAGGATGGTGTTGG+TGG | 0.538282 | 4_1:-13326144 | Msa0536350:three_prime_UTR |
| AGGTTTACTTACAACTGTGA+TGG | 0.540715 | 4_1:-13329541 | Msa0536350:CDS |
| TTTAATAAAAGATATGGTGG+AGG | 0.542291 | 4_1:-13328426 | Msa0536350:CDS |
| ATCGAACACACAACCTTCCG+AGG | 0.552585 | 4_1:+13326176 | None:intergenic |
| GATGTGAGGATGGTGTTGGT+GGG | 0.554623 | 4_1:-13326143 | Msa0536350:three_prime_UTR |
| GGGCAGGCCTCCGGACCGAA+AGG | 0.557828 | 4_1:+13326094 | None:intergenic |
| TTGAAGACACTGTAAAGCAA+TGG | 0.558595 | 4_1:+13329585 | None:intergenic |
| GGCAGGCCTCCGGACCGAAA+GGG | 0.562834 | 4_1:+13326095 | None:intergenic |
| GGCAGCAGGGAACCCAGTTG+AGG | 0.565308 | 4_1:-13326534 | Msa0536350:CDS |
| AGAGGTGGTGTCAAATTTGG+AGG | 0.566987 | 4_1:+13329841 | None:intergenic |
| ACGGGCCACTTCCCCTCGGA+AGG | 0.568566 | 4_1:-13326189 | Msa0536350:three_prime_UTR |
| TGCAGCAGATTCAATAGAAG+AGG | 0.571940 | 4_1:+13329720 | None:intergenic |
| GTTGTAGCCGTGGAGTCTGT+TGG | 0.571948 | 4_1:-13328492 | Msa0536350:CDS |
| GCGGAGTACAGTGACTTCAC+AGG | 0.572690 | 4_1:-13329619 | Msa0536350:CDS |
| TTGGCTCAGTTGGTAAGGAA+CGG | 0.573450 | 4_1:-13326208 | Msa0536350:three_prime_UTR |
| TAAGTTAACAACTGAAGCCA+TGG | 0.574043 | 4_1:+13326422 | None:intergenic |
| ACCATCCTCACATCAGCAGC+GGG | 0.575616 | 4_1:+13326152 | None:intergenic |
| TAAACCTGTTGTTAGAAGCA+GGG | 0.578456 | 4_1:+13329557 | None:intergenic |
| TCAATGCAATTATGATAGCA+AGG | 0.581523 | 4_1:+13326470 | None:intergenic |
| CCAACTGAGCCAACGTGTGT+TGG | 0.585359 | 4_1:+13326218 | None:intergenic |
| GCTCAAGTTTCTGAAGTCAA+AGG | 0.586109 | 4_1:-13328200 | Msa0536350:CDS |
| TAAGCGCCCTTTCGGTCCGG+AGG | 0.593146 | 4_1:-13326101 | Msa0536350:three_prime_UTR |
| CCACATCTTTCTCCTCAACT+GGG | 0.594648 | 4_1:+13326522 | None:intergenic |
| TTCGGCTCCGGTCACCACCA+GGG | 0.595826 | 4_1:+13326068 | None:intergenic |
| TCCCGCTGCTGATGTGAGGA+TGG | 0.597281 | 4_1:-13326153 | Msa0536350:three_prime_UTR |
| TGCTGATGTGAGGATGGTGT+TGG | 0.599666 | 4_1:-13326147 | Msa0536350:three_prime_UTR |
| TGTGAATTGTGATCATTCAT+GGG | 0.599877 | 4_1:-13329691 | Msa0536350:exon |
| TTGTCTACCAACAGACTCCA+CGG | 0.608206 | 4_1:+13328485 | None:intergenic |
| TCGTGGTACCGTGATTCTTG+CGG | 0.609688 | 4_1:-13329638 | Msa0536350:CDS |
| ACTGTACTCCGCAAGAATCA+CGG | 0.610685 | 4_1:+13329630 | None:intergenic |
| AGAATCTAACCTGAGAGCGA+AGG | 0.618405 | 4_1:+13327069 | None:intergenic |
| GAAGGGAAGTGAATAAGGTG+TGG | 0.619277 | 4_1:-13326271 | Msa0536350:three_prime_UTR |
| GCAGCAGATTCAATAGAAGA+GGG | 0.624397 | 4_1:+13329721 | None:intergenic |
| CGATTCCCGCTGCTGATGTG+AGG | 0.625265 | 4_1:-13326157 | Msa0536350:three_prime_UTR |
| GCACAAGATTTCAGGCAGCA+GGG | 0.625497 | 4_1:-13326547 | Msa0536350:CDS |
| GACCGAAAGGGCGCTTACAG+AGG | 0.626244 | 4_1:+13326107 | None:intergenic |
| CACCATCCTCACATCAGCAG+CGG | 0.632218 | 4_1:+13326151 | None:intergenic |
| AGGAACGGGCCACTTCCCCT+CGG | 0.634180 | 4_1:-13326193 | Msa0536350:three_prime_UTR |
| AGCTTACTGTGTTGTAGCCG+TGG | 0.638922 | 4_1:-13328502 | Msa0536350:CDS |
| ATTATCGACGAGGAAGCTGA+AGG | 0.649726 | 4_1:+13329513 | None:intergenic |
| TCGAACACACAACCTTCCGA+GGG | 0.650477 | 4_1:+13326177 | None:intergenic |
| GAGGCCTGCCCTGACCCTGG+TGG | 0.664380 | 4_1:-13326082 | Msa0536350:three_prime_UTR |
| CCCAGTTGAGGAGAAAGATG+TGG | 0.669727 | 4_1:-13326522 | Msa0536350:CDS |
| GGAGCAAATGCAATATTGTG+TGG | 0.673674 | 4_1:-13328261 | Msa0536350:CDS |
| AAGACACTGTAAAGCAATGG+TGG | 0.700756 | 4_1:+13329588 | None:intergenic |
| ATATTGTGTGGAACATCCGG+AGG | 0.702619 | 4_1:-13328249 | Msa0536350:CDS |
| TACTGAATCCATTATCGACG+AGG | 0.708046 | 4_1:+13329503 | None:intergenic |
| TATGATGGAAAATATCGACA+AGG | 0.735916 | 4_1:-13328174 | Msa0536350:intron |
| CGAACACACAACCTTCCGAG+GGG | 0.760573 | 4_1:+13326178 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTACAAAAAGTTT+AGG | + | chr4_1:13329812-13329831 | None:intergenic | 10.0% |
| !!! | TTTATTTTTTGGAAAAGAAA+TGG | + | chr4_1:13326096-13326115 | None:intergenic | 15.0% |
| !! | TTGAACAAAAAATTATTCAA+GGG | + | chr4_1:13326425-13326444 | None:intergenic | 15.0% |
| !!! | AAGAAAAAATCTCATATTTT+TGG | + | chr4_1:13326612-13326631 | None:intergenic | 15.0% |
| !! | ATTGAAAAAAACAAAATGTA+AGG | + | chr4_1:13327074-13327093 | None:intergenic | 15.0% |
| !!! | TCATAAATTTTAAGATAAGA+GGG | + | chr4_1:13327227-13327246 | None:intergenic | 15.0% |
| !!! | ATCATAAATTTTAAGATAAG+AGG | + | chr4_1:13327228-13327247 | None:intergenic | 15.0% |
| !!! | TTCATCTACATATATTTTTT+TGG | - | chr4_1:13327257-13327276 | Msa0536350:intron | 15.0% |
| !!! | GATGATTTTAATAAAAGATA+TGG | - | chr4_1:13327418-13327437 | Msa0536350:intron | 15.0% |
| !! | AAATTTCATATAGTCATAAA+TGG | + | chr4_1:13328396-13328415 | None:intergenic | 15.0% |
| !!! | TATTATTATATGTTATTTGC+AGG | - | chr4_1:13328709-13328728 | Msa0536350:intron | 15.0% |
| !! | AAAATGATGAAGAAATGAAA+AGG | + | chr4_1:13326073-13326092 | None:intergenic | 20.0% |
| !! | GTTGAACAAAAAATTATTCA+AGG | + | chr4_1:13326426-13326445 | None:intergenic | 20.0% |
| !!! | TTAAACTGAACATTTTTACT+AGG | - | chr4_1:13326463-13326482 | Msa0536350:CDS | 20.0% |
| !!! | TAAACTGAACATTTTTACTA+GGG | - | chr4_1:13326464-13326483 | Msa0536350:CDS | 20.0% |
| !! | AAATCTAACATAATTAACGT+AGG | - | chr4_1:13326583-13326602 | Msa0536350:intron | 20.0% |
| !!! | TAATCTGATTTTATGAATTG+AGG | + | chr4_1:13327003-13327022 | None:intergenic | 20.0% |
| !! | ATAAGTAATTTAAGCAAGTA+AGG | + | chr4_1:13327182-13327201 | None:intergenic | 20.0% |
| !! | TTACTTGCTTAAATTACTTA+TGG | - | chr4_1:13327181-13327200 | Msa0536350:intron | 20.0% |
| !!! | GATTTTAATAAAAGATATGG+TGG | - | chr4_1:13327421-13327440 | Msa0536350:intron | 20.0% |
| !! | AAAAGTCTTAACAAAGAATT+TGG | - | chr4_1:13327469-13327488 | Msa0536350:intron | 20.0% |
| !! | AAAGTCTTAACAAAGAATTT+GGG | - | chr4_1:13327470-13327489 | Msa0536350:intron | 20.0% |
| !!! | TAGATTTTAAGATTTATGTC+GGG | + | chr4_1:13327823-13327842 | None:intergenic | 20.0% |
| !!! | CTAGATTTTAAGATTTATGT+CGG | + | chr4_1:13327824-13327843 | None:intergenic | 20.0% |
| !!! | ATTGACTCATATCATAAAAA+TGG | + | chr4_1:13327986-13328005 | None:intergenic | 20.0% |
| !!! | CTTTTATGTATTTATAGAAC+CGG | + | chr4_1:13328050-13328069 | None:intergenic | 20.0% |
| !! | CAAAGAAATCATCAATTATA+TGG | + | chr4_1:13328159-13328178 | None:intergenic | 20.0% |
| !! | TCAGTTGTTTAACATTATTA+TGG | - | chr4_1:13328313-13328332 | Msa0536350:intron | 20.0% |
| !!! | TATTTTTGTAGAATCGATAT+AGG | + | chr4_1:13328493-13328512 | None:intergenic | 20.0% |
| !! | GAATTTCATTTAATATCATG+TGG | - | chr4_1:13328676-13328695 | Msa0536350:intron | 20.0% |
| !! | ATTTGCATATATAAAACTGT+TGG | + | chr4_1:13328845-13328864 | None:intergenic | 20.0% |
| !! | AATTGAATTAGAGATGATTA+TGG | - | chr4_1:13328862-13328881 | Msa0536350:intron | 20.0% |
| !!! | ATTCCAATGTTTTATAGTTT+TGG | - | chr4_1:13329048-13329067 | Msa0536350:intron | 20.0% |
| !! | TCCATTAAATTCTGAATTAT+TGG | - | chr4_1:13329250-13329269 | Msa0536350:intron | 20.0% |
| !! | TCCAATAATTCAGAATTTAA+TGG | + | chr4_1:13329254-13329273 | None:intergenic | 20.0% |
| !! | TTTGTTTATTAGACATTCAA+TGG | - | chr4_1:13329535-13329554 | Msa0536350:CDS | 20.0% |
| !!! | TTTTTTACAAAAAGTTTAGG+TGG | + | chr4_1:13329809-13329828 | None:intergenic | 20.0% |
| !! | AAACTGTATTGTTTCATTTA+TGG | - | chr4_1:13329831-13329850 | Msa0536350:five_prime_UTR | 20.0% |
| !!! | TAGGATATCACAGTTTTATA+TGG | - | chr4_1:13326495-13326514 | Msa0536350:CDS | 25.0% |
| ! | TTTAGACAAAACCAAAAACA+AGG | - | chr4_1:13326534-13326553 | Msa0536350:CDS | 25.0% |
| !!! | TTTTAATTGTGATGATGAAG+TGG | - | chr4_1:13326665-13326684 | Msa0536350:intron | 25.0% |
| !!! | TGTATTTTGAGCAATGTATA+AGG | - | chr4_1:13326729-13326748 | Msa0536350:intron | 25.0% |
| ! | AAAATTATCCAATGATGCTT+TGG | - | chr4_1:13326916-13326935 | Msa0536350:intron | 25.0% |
| !! | TTTTATTAGTGAGCTTCAAA+TGG | + | chr4_1:13327108-13327127 | None:intergenic | 25.0% |
| ! | AAACAAGTTCAACAGAAAAA+AGG | + | chr4_1:13327308-13327327 | None:intergenic | 25.0% |
| ! | TTTAATAAAAGATATGGTGG+AGG | - | chr4_1:13327424-13327443 | Msa0536350:intron | 25.0% |
| ! | TTCATAGCAGTATAAAAAAC+AGG | - | chr4_1:13327879-13327898 | Msa0536350:intron | 25.0% |
| !!! | GATATGAGTCAATTTTAACT+CGG | - | chr4_1:13327993-13328012 | Msa0536350:intron | 25.0% |
| ! | AACTGAGACAAAATACTTAA+AGG | + | chr4_1:13328299-13328318 | None:intergenic | 25.0% |
| ! | AAAATCGCAATCAAAATTGA+TGG | + | chr4_1:13328457-13328476 | None:intergenic | 25.0% |
| !!! | TCGATTTTGTTATTTCCTTA+TGG | - | chr4_1:13328555-13328574 | Msa0536350:intron | 25.0% |
| !! | AATGAAATTCTAGAGACAAT+TGG | + | chr4_1:13328666-13328685 | None:intergenic | 25.0% |
| ! | TTATTTGCAGGTTATTGATA+GGG | - | chr4_1:13328721-13328740 | Msa0536350:intron | 25.0% |
| !! | CATATATAAAACTGTTGGTT+TGG | + | chr4_1:13328840-13328859 | None:intergenic | 25.0% |
| ! | CATCCAAAACTATAAAACAT+TGG | + | chr4_1:13329054-13329073 | None:intergenic | 25.0% |
| !!! | CAATGTTTTATAGTTTTGGA+TGG | - | chr4_1:13329052-13329071 | Msa0536350:intron | 25.0% |
| ! | AAAACTAGATGTGAGAATTT+GGG | + | chr4_1:13329130-13329149 | None:intergenic | 25.0% |
| ! | GTTGTGGTTATTTATTATCT+AGG | - | chr4_1:13329197-13329216 | Msa0536350:intron | 25.0% |
| ! | TATTGGAATGTCAATTGAAA+TGG | - | chr4_1:13329267-13329286 | Msa0536350:intron | 25.0% |
| ! | AGAATTGTCACTACATATAT+TGG | - | chr4_1:13329465-13329484 | Msa0536350:intron | 25.0% |
| ! | ATGTAAAAAACAGTTAGGAA+GGG | - | chr4_1:13329562-13329581 | Msa0536350:CDS | 25.0% |
| TTGTGAATTGTGATCATTCA+TGG | - | chr4_1:13326158-13326177 | Msa0536350:three_prime_UTR | 30.0% | |
| TGTGAATTGTGATCATTCAT+GGG | - | chr4_1:13326159-13326178 | Msa0536350:three_prime_UTR | 30.0% | |
| ! | ATCATTGATCTATAGCTTTG+TGG | - | chr4_1:13326188-13326207 | Msa0536350:three_prime_UTR | 30.0% |
| ! | AAAAATCTCCAAAGCATCAT+TGG | + | chr4_1:13326927-13326946 | None:intergenic | 30.0% |
| ! | TGAACTTGTTTCATGATTAG+TGG | - | chr4_1:13327317-13327336 | Msa0536350:intron | 30.0% |
| ATACGTTCAAGAAAAGCTAT+TGG | + | chr4_1:13327394-13327413 | None:intergenic | 30.0% | |
| ! | AGCTTTTCTTGAACGTATTA+AGG | - | chr4_1:13327396-13327415 | Msa0536350:intron | 30.0% |
| ! | TATGATGGAAAATATCGACA+AGG | - | chr4_1:13327676-13327695 | Msa0536350:intron | 30.0% |
| !!! | AAATGTAGGTGCTATTTTGT+TGG | + | chr4_1:13327742-13327761 | None:intergenic | 30.0% |
| ! | GGTTCTTCAATCTAAAATGT+AGG | + | chr4_1:13327756-13327775 | None:intergenic | 30.0% |
| TTTAGATTGAAGAACCGAAT+CGG | - | chr4_1:13327760-13327779 | Msa0536350:intron | 30.0% | |
| ! | ATAACATGTAGATACCGATT+CGG | + | chr4_1:13327777-13327796 | None:intergenic | 30.0% |
| TATTTATAGAACCGGATCAT+AGG | + | chr4_1:13328042-13328061 | None:intergenic | 30.0% | |
| ! | TTTTATTCTTTCACACCACA+CGG | - | chr4_1:13328080-13328099 | Msa0536350:intron | 30.0% |
| ! | TCTTTTGCCTTGAAACTTAA+TGG | - | chr4_1:13328225-13328244 | Msa0536350:CDS | 30.0% |
| TAAGTGACCATTAAGTTTCA+AGG | + | chr4_1:13328235-13328254 | None:intergenic | 30.0% | |
| AAATATTTCGTCAGACATGT+AGG | - | chr4_1:13328268-13328287 | Msa0536350:CDS | 30.0% | |
| TATGGCTACTAAAGAATATC+TGG | - | chr4_1:13328331-13328350 | Msa0536350:intron | 30.0% | |
| AAAATCGCAATCAAAATCGA+AGG | + | chr4_1:13328528-13328547 | None:intergenic | 30.0% | |
| GTTATTTGCAGGTTATTGAT+AGG | - | chr4_1:13328720-13328739 | Msa0536350:intron | 30.0% | |
| TATTTGCAGGTTATTGATAG+GGG | - | chr4_1:13328722-13328741 | Msa0536350:intron | 30.0% | |
| ! | TTGTTTGGTTTAAATGTGAG+TGG | - | chr4_1:13328969-13328988 | Msa0536350:intron | 30.0% |
| !!! | TATAGTTTTGGATGGAATTG+TGG | - | chr4_1:13329060-13329079 | Msa0536350:intron | 30.0% |
| GAAAACTAGATGTGAGAATT+TGG | + | chr4_1:13329131-13329150 | None:intergenic | 30.0% | |
| GAATGTCAATTGAAATGGTA+TGG | - | chr4_1:13329272-13329291 | Msa0536350:intron | 30.0% | |
| TCAATGCAATTATGATAGCA+AGG | + | chr4_1:13329383-13329402 | None:intergenic | 30.0% | |
| GCTTCATGTAAAAAACAGTT+AGG | - | chr4_1:13329557-13329576 | Msa0536350:CDS | 30.0% | |
| CATGTAAAAAACAGTTAGGA+AGG | - | chr4_1:13329561-13329580 | Msa0536350:CDS | 30.0% | |
| ! | ACAAAAAGTTTAGGTGGATT+CGG | + | chr4_1:13329803-13329822 | None:intergenic | 30.0% |
| TTGAAGACACTGTAAAGCAA+TGG | + | chr4_1:13326268-13326287 | None:intergenic | 35.0% | |
| TAAACCTGTTGTTAGAAGCA+GGG | + | chr4_1:13326296-13326315 | None:intergenic | 35.0% | |
| AGGTTTACTTACAACTGTGA+TGG | - | chr4_1:13326309-13326328 | Msa0536350:three_prime_UTR | 35.0% | |
| ! | TTTTACTAGGGTTCGAACTT+AGG | - | chr4_1:13326476-13326495 | Msa0536350:CDS | 35.0% |
| !!! | GCACTTATGTACCTTGTTTT+TGG | + | chr4_1:13326548-13326567 | None:intergenic | 35.0% |
| CATCCAATAATAGAAGTGGA+CGG | + | chr4_1:13326692-13326711 | None:intergenic | 35.0% | |
| TGAGCAATGTATAAGGTCAA+TGG | - | chr4_1:13326736-13326755 | Msa0536350:intron | 35.0% | |
| TAGGTGGAACAATAACTAGT+TGG | - | chr4_1:13326774-13326793 | Msa0536350:intron | 35.0% | |
| ! | ATGCTTTAGACCAAAGTTGA+AGG | - | chr4_1:13327568-13327587 | Msa0536350:intron | 35.0% |
| TGAAGTCAAAGGAGTTATGA+TGG | - | chr4_1:13327661-13327680 | Msa0536350:intron | 35.0% | |
| GAAAATCCATGCAAAATCGT+AGG | - | chr4_1:13327943-13327962 | Msa0536350:intron | 35.0% | |
| ! | CAAAATCCTACGATTTTGCA+TGG | + | chr4_1:13327952-13327971 | None:intergenic | 35.0% |
| ! | GCAAAATCGTAGGATTTTGA+AGG | - | chr4_1:13327953-13327972 | Msa0536350:intron | 35.0% |
| ! | TTTCTTTGTGATTTGCATCG+AGG | - | chr4_1:13328171-13328190 | Msa0536350:intron | 35.0% |
| CTAAAGAATATCTGGCATCT+AGG | - | chr4_1:13328339-13328358 | Msa0536350:intron | 35.0% | |
| ! | ATCTAGGCTTGAGTATTTTG+TGG | - | chr4_1:13328355-13328374 | Msa0536350:intron | 35.0% |
| TTCAGGTCACAAAATCCATA+AGG | + | chr4_1:13328573-13328592 | None:intergenic | 35.0% | |
| ! | GACAGTAGGTTTTCAAAATC+GGG | + | chr4_1:13328603-13328622 | None:intergenic | 35.0% |
| ! | GGACAGTAGGTTTTCAAAAT+CGG | + | chr4_1:13328604-13328623 | None:intergenic | 35.0% |
| !! | GATTTTGAAAACCTACTGTC+CGG | - | chr4_1:13328603-13328622 | Msa0536350:intron | 35.0% |
| ACTCGAATGATGTCTTTGTT+TGG | - | chr4_1:13328954-13328973 | Msa0536350:intron | 35.0% | |
| ATTGTGGTGTCTAAATCTCT+TGG | - | chr4_1:13329076-13329095 | Msa0536350:intron | 35.0% | |
| !!! | GAGCTTAGCTTATTTTGTTG+TGG | - | chr4_1:13329181-13329200 | Msa0536350:intron | 35.0% |
| TAAGTTAACAACTGAAGCCA+TGG | + | chr4_1:13329431-13329450 | None:intergenic | 35.0% | |
| ! | TTTTTATTGCCAACACACGT+TGG | - | chr4_1:13329623-13329642 | Msa0536350:CDS | 35.0% |
| AGATATAGAGAGAGAGAGAG+AGG | + | chr4_1:13326030-13326049 | None:intergenic | 40.0% | |
| GCAGCAGATTCAATAGAAGA+GGG | + | chr4_1:13326132-13326151 | None:intergenic | 40.0% | |
| TGCAGCAGATTCAATAGAAG+AGG | + | chr4_1:13326133-13326152 | None:intergenic | 40.0% | |
| AAGACACTGTAAAGCAATGG+TGG | + | chr4_1:13326265-13326284 | None:intergenic | 40.0% | |
| GTAAACCTGTTGTTAGAAGC+AGG | + | chr4_1:13326297-13326316 | None:intergenic | 40.0% | |
| TACTGAATCCATTATCGACG+AGG | + | chr4_1:13326350-13326369 | None:intergenic | 40.0% | |
| CGTCCACTTCTATTATTGGA+TGG | - | chr4_1:13326690-13326709 | Msa0536350:intron | 40.0% | |
| CCACCATCCAATAATAGAAG+TGG | + | chr4_1:13326696-13326715 | None:intergenic | 40.0% | |
| CCACTTCTATTATTGGATGG+TGG | - | chr4_1:13326693-13326712 | Msa0536350:intron | 40.0% | |
| TAAGGTCAATGGTCCAAACT+TGG | - | chr4_1:13326747-13326766 | Msa0536350:intron | 40.0% | |
| ATGGTCCAAACTTGGCTAAT+AGG | - | chr4_1:13326755-13326774 | Msa0536350:intron | 40.0% | |
| TTCCACCTATTAGCCAAGTT+TGG | + | chr4_1:13326763-13326782 | None:intergenic | 40.0% | |
| TGCATTTGCTCCTTCAACTT+TGG | + | chr4_1:13327581-13327600 | None:intergenic | 40.0% | |
| GGAGCAAATGCAATATTGTG+TGG | - | chr4_1:13327589-13327608 | Msa0536350:intron | 40.0% | |
| GCAATATTGTGTGGAACATC+CGG | - | chr4_1:13327598-13327617 | Msa0536350:intron | 40.0% | |
| !! | GCTCAAGTTTCTGAAGTCAA+AGG | - | chr4_1:13327650-13327669 | Msa0536350:intron | 40.0% |
| ! | CAAAATCGGGATTTAGCTTC+AGG | + | chr4_1:13328590-13328609 | None:intergenic | 40.0% |
| ! | GCAAAGCACCTAAACATACA+CGG | + | chr4_1:13328632-13328651 | None:intergenic | 40.0% |
| TCGAATTCCAGTGATCTCTA+AGG | + | chr4_1:13329163-13329182 | None:intergenic | 40.0% | |
| ! | TTGAAATGGTATGGCTTTGC+AGG | - | chr4_1:13329281-13329300 | Msa0536350:intron | 40.0% |
| ATTGTTCTTTCTGTGTGCCA+TGG | - | chr4_1:13329411-13329430 | Msa0536350:intron | 40.0% | |
| GTTAGGAAGGGAAGTGAATA+AGG | - | chr4_1:13329574-13329593 | Msa0536350:CDS | 40.0% | |
| ! | GAGAGAGGTGGTGTCAAATT+TGG | + | chr4_1:13326015-13326034 | None:intergenic | 45.0% |
| TATAGAGAGAGAGAGAGAGG+TGG | + | chr4_1:13326027-13326046 | None:intergenic | 45.0% | |
| !! | ATCTATAGCTTTGTGGCTCG+TGG | - | chr4_1:13326195-13326214 | Msa0536350:three_prime_UTR | 45.0% |
| ACTGTACTCCGCAAGAATCA+CGG | + | chr4_1:13326223-13326242 | None:intergenic | 45.0% | |
| AACTCCCTGCTTCTAACAAC+AGG | - | chr4_1:13326289-13326308 | Msa0536350:three_prime_UTR | 45.0% | |
| ATTATCGACGAGGAAGCTGA+AGG | + | chr4_1:13326340-13326359 | None:intergenic | 45.0% | |
| TTCAGCTTCCTCGTCGATAA+TGG | - | chr4_1:13326339-13326358 | Msa0536350:three_prime_UTR | 45.0% | |
| GGACCGTCCACTTCTATTAT+TGG | - | chr4_1:13326686-13326705 | Msa0536350:intron | 45.0% | |
| GTCCAAACTTGGCTAATAGG+TGG | - | chr4_1:13326758-13326777 | Msa0536350:intron | 45.0% | |
| TTGTCTACCAACAGACTCCA+CGG | + | chr4_1:13327368-13327387 | None:intergenic | 45.0% | |
| ATATTGTGTGGAACATCCGG+AGG | - | chr4_1:13327601-13327620 | Msa0536350:intron | 45.0% | |
| !! | GCAAGTTTGCTAACTTCCTC+CGG | + | chr4_1:13327620-13327639 | None:intergenic | 45.0% |
| ACTCGGTTCATCAATTGACC+TGG | - | chr4_1:13328010-13328029 | Msa0536350:intron | 45.0% | |
| ! | CCTGGTTTGTACCTATGATC+CGG | - | chr4_1:13328028-13328047 | Msa0536350:intron | 45.0% |
| TCTGCACAAGAGATTGACGA+AGG | - | chr4_1:13328105-13328124 | Msa0536350:intron | 45.0% | |
| ! | AGGCGAACGTGTTGATATGA+TGG | - | chr4_1:13328125-13328144 | Msa0536350:intron | 45.0% |
| ACCTAAACATACACGGACAC+CGG | + | chr4_1:13328625-13328644 | None:intergenic | 45.0% | |
| TGATAGGGGAGAGAAGATTG+AGG | - | chr4_1:13328736-13328755 | Msa0536350:intron | 45.0% | |
| !! | AGAGAAGATTGAGGTGTTGG+TGG | - | chr4_1:13328745-13328764 | Msa0536350:intron | 45.0% |
| AGAATCTAACCTGAGAGCGA+AGG | + | chr4_1:13328784-13328803 | None:intergenic | 45.0% | |
| GTTGATGCCTTAGAGATCAC+TGG | - | chr4_1:13329153-13329172 | Msa0536350:intron | 45.0% | |
| CTTTGCAGGCACAAGATTTC+AGG | - | chr4_1:13329295-13329314 | Msa0536350:intron | 45.0% | |
| CCACATCTTTCTCCTCAACT+GGG | + | chr4_1:13329331-13329350 | None:intergenic | 45.0% | |
| ACCACATCTTTCTCCTCAAC+TGG | + | chr4_1:13329332-13329351 | None:intergenic | 45.0% | |
| GAAGGGAAGTGAATAAGGTG+TGG | - | chr4_1:13329579-13329598 | Msa0536350:CDS | 45.0% | |
| GGAAGTGAATAAGGTGTGGT+AGG | - | chr4_1:13329583-13329602 | Msa0536350:CDS | 45.0% | |
| !! | TTGGCTCAGTTGGTAAGGAA+CGG | - | chr4_1:13329642-13329661 | Msa0536350:CDS | 45.0% |
| !!! | AGATTTTTTATTTTATTTTT+TGG | + | chr4_1:13326107-13326126 | None:intergenic | 5.0% |
| !! | TATATTTAATTAATGTTTAA+TGG | - | chr4_1:13326805-13326824 | Msa0536350:intron | 5.0% |
| !!! | TAAAAATAAAATATGATTTT+AGG | - | chr4_1:13326883-13326902 | Msa0536350:intron | 5.0% |
| TCGTGGTACCGTGATTCTTG+CGG | - | chr4_1:13326212-13326231 | Msa0536350:three_prime_UTR | 50.0% | |
| AGCTTACTGTGTTGTAGCCG+TGG | - | chr4_1:13327348-13327367 | Msa0536350:intron | 50.0% | |
| CCGGATCATAGGTACAAACC+AGG | + | chr4_1:13328031-13328050 | None:intergenic | 50.0% | |
| TCCGGTGTCCGTGTATGTTT+AGG | - | chr4_1:13328621-13328640 | Msa0536350:intron | 50.0% | |
| GGGAGAGAAGATTGAGGTGT+TGG | - | chr4_1:13328742-13328761 | Msa0536350:intron | 50.0% | |
| AACTGAGAACCTTCGCTCTC+AGG | - | chr4_1:13328772-13328791 | Msa0536350:intron | 50.0% | |
| TTGGGAGCAACTCGATGATC+AGG | + | chr4_1:13329112-13329131 | None:intergenic | 50.0% | |
| GCACAAGATTTCAGGCAGCA+GGG | - | chr4_1:13329303-13329322 | Msa0536350:intron | 50.0% | |
| CCCAGTTGAGGAGAAAGATG+TGG | - | chr4_1:13329328-13329347 | Msa0536350:intron | 50.0% | |
| !! | ACACGTTGGCTCAGTTGGTA+AGG | - | chr4_1:13329637-13329656 | Msa0536350:CDS | 50.0% |
| !! | TGGCTCAGTTGGTAAGGAAC+GGG | - | chr4_1:13329643-13329662 | Msa0536350:CDS | 50.0% |
| TCGAACACACAACCTTCCGA+GGG | + | chr4_1:13329676-13329695 | None:intergenic | 50.0% | |
| ATCGAACACACAACCTTCCG+AGG | + | chr4_1:13329677-13329696 | None:intergenic | 50.0% | |
| TGCTGATGTGAGGATGGTGT+TGG | - | chr4_1:13329703-13329722 | Msa0536350:five_prime_UTR | 50.0% | |
| ! | TGATGTGAGGATGGTGTTGG+TGG | - | chr4_1:13329706-13329725 | Msa0536350:five_prime_UTR | 50.0% |
| !! | GATGTGAGGATGGTGTTGGT+GGG | - | chr4_1:13329707-13329726 | Msa0536350:five_prime_UTR | 50.0% |
| TACCTCTGTAAGCGCCCTTT+CGG | - | chr4_1:13329741-13329760 | Msa0536350:five_prime_UTR | 50.0% | |
| ! | AGTTTAGGTGGATTCGGCTC+CGG | + | chr4_1:13329797-13329816 | None:intergenic | 50.0% |
| GCGGAGTACAGTGACTTCAC+AGG | - | chr4_1:13326231-13326250 | Msa0536350:three_prime_UTR | 55.0% | |
| GTTGTAGCCGTGGAGTCTGT+TGG | - | chr4_1:13327358-13327377 | Msa0536350:intron | 55.0% | |
| TCTCTTGTGCAGAGACCGTG+TGG | + | chr4_1:13328098-13328117 | None:intergenic | 55.0% | |
| ATACACGGACACCGGACAGT+AGG | + | chr4_1:13328617-13328636 | None:intergenic | 55.0% | |
| GGCACAAGATTTCAGGCAGC+AGG | - | chr4_1:13329302-13329321 | Msa0536350:intron | 55.0% | |
| CCAACTGAGCCAACGTGTGT+TGG | + | chr4_1:13329635-13329654 | None:intergenic | 55.0% | |
| !! | CCAACACACGTTGGCTCAGT+TGG | - | chr4_1:13329632-13329651 | Msa0536350:CDS | 55.0% |
| CGAACACACAACCTTCCGAG+GGG | + | chr4_1:13329675-13329694 | None:intergenic | 55.0% | |
| ACCATCCTCACATCAGCAGC+GGG | + | chr4_1:13329701-13329720 | None:intergenic | 55.0% | |
| CACCATCCTCACATCAGCAG+CGG | + | chr4_1:13329702-13329721 | None:intergenic | 55.0% | |
| CACAACCTTCCGAGGGGAAG+TGG | + | chr4_1:13329669-13329688 | None:intergenic | 60.0% | |
| CGATTCCCGCTGCTGATGTG+AGG | - | chr4_1:13329693-13329712 | Msa0536350:exon | 60.0% | |
| TCCCGCTGCTGATGTGAGGA+TGG | - | chr4_1:13329697-13329716 | Msa0536350:five_prime_UTR | 60.0% | |
| !! | GACCGAAAGGGCGCTTACAG+AGG | + | chr4_1:13329746-13329765 | None:intergenic | 60.0% |
| CTGTAAGCGCCCTTTCGGTC+CGG | - | chr4_1:13329746-13329765 | Msa0536350:five_prime_UTR | 60.0% | |
| GGCAGCAGGGAACCCAGTTG+AGG | - | chr4_1:13329316-13329335 | Msa0536350:intron | 65.0% | |
| AGGAACGGGCCACTTCCCCT+CGG | - | chr4_1:13329657-13329676 | Msa0536350:CDS | 65.0% | |
| TAAGCGCCCTTTCGGTCCGG+AGG | - | chr4_1:13329749-13329768 | Msa0536350:five_prime_UTR | 65.0% | |
| TCCGGTCACCACCAGGGTCA+GGG | + | chr4_1:13329779-13329798 | None:intergenic | 65.0% | |
| TTCGGCTCCGGTCACCACCA+GGG | + | chr4_1:13329785-13329804 | None:intergenic | 65.0% | |
| ATTCGGCTCCGGTCACCACC+AGG | + | chr4_1:13329786-13329805 | None:intergenic | 65.0% | |
| ACGGGCCACTTCCCCTCGGA+AGG | - | chr4_1:13329661-13329680 | Msa0536350:CDS | 70.0% | |
| GGCAGGCCTCCGGACCGAAA+GGG | + | chr4_1:13329758-13329777 | None:intergenic | 70.0% | |
| GTCACCACCAGGGTCAGGGC+AGG | + | chr4_1:13329775-13329794 | None:intergenic | 70.0% | |
| ! | GCCCTGACCCTGGTGGTGAC+CGG | - | chr4_1:13329775-13329794 | Msa0536350:five_prime_UTR | 70.0% |
| CTCCGGTCACCACCAGGGTC+AGG | + | chr4_1:13329780-13329799 | None:intergenic | 70.0% | |
| GGGCAGGCCTCCGGACCGAA+AGG | + | chr4_1:13329759-13329778 | None:intergenic | 75.0% | |
| CCAGGGTCAGGGCAGGCCTC+CGG | + | chr4_1:13329768-13329787 | None:intergenic | 75.0% | |
| GAGGCCTGCCCTGACCCTGG+TGG | - | chr4_1:13329768-13329787 | Msa0536350:five_prime_UTR | 75.0% | |
| ! | CCGGAGGCCTGCCCTGACCC+TGG | - | chr4_1:13329765-13329784 | Msa0536350:five_prime_UTR | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 13326012 | 13329860 | 13326012 | ID=Msa0536350;Name=Msa0536350 |
| chr4_1 | mRNA | 13326012 | 13329860 | 13326012 | ID=Msa0536350-mRNA-1;Parent=Msa0536350;Name=Msa0536350-mRNA-1;_AED=0.04;_eAED=0.04;_QI=165|1|1|1|1|1|5|414|219 |
| chr4_1 | exon | 13326012 | 13326569 | 13326012 | ID=Msa0536350-mRNA-1:exon:4234;Parent=Msa0536350-mRNA-1 |
| chr4_1 | exon | 13327079 | 13327141 | 13327079 | ID=Msa0536350-mRNA-1:exon:4233;Parent=Msa0536350-mRNA-1 |
| chr4_1 | exon | 13328175 | 13328295 | 13328175 | ID=Msa0536350-mRNA-1:exon:4232;Parent=Msa0536350-mRNA-1 |
| chr4_1 | exon | 13328381 | 13328522 | 13328381 | ID=Msa0536350-mRNA-1:exon:4231;Parent=Msa0536350-mRNA-1 |
| chr4_1 | exon | 13329506 | 13329860 | 13329506 | ID=Msa0536350-mRNA-1:exon:4230;Parent=Msa0536350-mRNA-1 |
| chr4_1 | five_prime_UTR | 13329696 | 13329860 | 13329696 | ID=Msa0536350-mRNA-1:five_prime_utr;Parent=Msa0536350-mRNA-1 |
| chr4_1 | CDS | 13329506 | 13329695 | 13329506 | ID=Msa0536350-mRNA-1:cds;Parent=Msa0536350-mRNA-1 |
| chr4_1 | CDS | 13328381 | 13328522 | 13328381 | ID=Msa0536350-mRNA-1:cds;Parent=Msa0536350-mRNA-1 |
| chr4_1 | CDS | 13328175 | 13328295 | 13328175 | ID=Msa0536350-mRNA-1:cds;Parent=Msa0536350-mRNA-1 |
| chr4_1 | CDS | 13327079 | 13327141 | 13327079 | ID=Msa0536350-mRNA-1:cds;Parent=Msa0536350-mRNA-1 |
| chr4_1 | CDS | 13326426 | 13326569 | 13326426 | ID=Msa0536350-mRNA-1:cds;Parent=Msa0536350-mRNA-1 |
| chr4_1 | three_prime_UTR | 13326012 | 13326425 | 13326012 | ID=Msa0536350-mRNA-1:three_prime_utr;Parent=Msa0536350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
