Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772280 | XP_003612071.2 | 99.006 | 503 | 5 | 0 | 1 | 503 | 1 | 503 | 0.0 | 1035 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772280 | sp|Q9FN75|AATPI_ARATH | 55.150 | 466 | 189 | 6 | 1 | 452 | 1 | 460 | 4.39e-179 | 515 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772280 | G7KF09 | 99.006 | 503 | 5 | 0 | 1 | 503 | 1 | 503 | 0.0 | 1035 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001550 | Msa0772280 | -0.804314 | 2.292846e-49 | -8.615850e-47 |
| Msa0011050 | Msa0772280 | 0.803688 | 3.093255e-49 | -8.615850e-47 |
| Msa0023480 | Msa0772280 | 0.811588 | 6.494041e-51 | -8.615850e-47 |
| Msa0053860 | Msa0772280 | 0.802378 | 5.772898e-49 | -8.615850e-47 |
| Msa0054920 | Msa0772280 | 0.832151 | 1.113316e-55 | -8.615850e-47 |
| Msa0060070 | Msa0772280 | 0.803078 | 4.137985e-49 | -8.615850e-47 |
| Msa0077370 | Msa0772280 | 0.813776 | 2.156611e-51 | -8.615850e-47 |
| Msa0078120 | Msa0772280 | 0.801740 | 7.808868e-49 | -8.615850e-47 |
| Msa0082420 | Msa0772280 | 0.817399 | 3.365481e-52 | -8.615850e-47 |
| Msa0089730 | Msa0772280 | 0.833523 | 5.079650e-56 | -8.615850e-47 |
| Msa0090510 | Msa0772280 | 0.815888 | 7.339004e-52 | -8.615850e-47 |
| Msa0090970 | Msa0772280 | 0.803124 | 4.048768e-49 | -8.615850e-47 |
| Msa0094710 | Msa0772280 | 0.806115 | 9.621639e-50 | -8.615850e-47 |
| Msa0100290 | Msa0772280 | 0.832366 | 9.848657e-56 | -8.615850e-47 |
| Msa0101860 | Msa0772280 | 0.821865 | 3.217078e-53 | -8.615850e-47 |
| Msa0104670 | Msa0772280 | 0.809269 | 2.057088e-50 | -8.615850e-47 |
| Msa0113370 | Msa0772280 | -0.815790 | 7.718233e-52 | -8.615850e-47 |
| Msa0117520 | Msa0772280 | 0.827058 | 1.929019e-54 | -8.615850e-47 |
| Msa0606080 | Msa0772280 | 0.803210 | 3.887059e-49 | -8.615850e-47 |
| Msa0611540 | Msa0772280 | -0.818860 | 1.572069e-52 | -8.615850e-47 |
| Msa0641130 | Msa0772280 | 0.857904 | 1.187250e-62 | -8.615850e-47 |
| Msa0647030 | Msa0772280 | 0.815045 | 1.130405e-51 | -8.615850e-47 |
| Msa0654900 | Msa0772280 | 0.812199 | 4.781311e-51 | -8.615850e-47 |
| Msa0657120 | Msa0772280 | 0.808186 | 3.504142e-50 | -8.615850e-47 |
| Msa0665530 | Msa0772280 | -0.830118 | 3.515390e-55 | -8.615850e-47 |
| Msa0698450 | Msa0772280 | 0.820358 | 7.154469e-53 | -8.615850e-47 |
| Msa0698460 | Msa0772280 | 0.828399 | 9.184776e-55 | -8.615850e-47 |
| Msa0744640 | Msa0772280 | 0.809063 | 2.277177e-50 | -8.615850e-47 |
| Msa0772280 | Msa0775170 | -0.802658 | 5.054895e-49 | -8.615850e-47 |
| Msa0772280 | Msa0810440 | 0.918582 | 1.303797e-86 | -8.615850e-47 |
| Msa0772280 | Msa0817710 | 0.800768 | 1.234258e-48 | -8.615850e-47 |
| Msa0772280 | Msa0823540 | 0.819953 | 8.857272e-53 | -8.615850e-47 |
| Msa0772280 | Msa0841730 | 0.810068 | 1.384959e-50 | -8.615850e-47 |
| Msa0772280 | Msa0862620 | 0.810241 | 1.270914e-50 | -8.615850e-47 |
| Msa0772280 | Msa0863990 | 0.802131 | 6.490440e-49 | -8.615850e-47 |
| Msa0772280 | Msa0870510 | 0.823046 | 1.709697e-53 | -8.615850e-47 |
| Msa0772280 | Msa0910620 | 0.821571 | 3.762308e-53 | -8.615850e-47 |
| Msa0772280 | Msa0922190 | 0.817089 | 3.950296e-52 | -8.615850e-47 |
| Msa0772280 | Msa0946110 | 0.804195 | 2.427267e-49 | -8.615850e-47 |
| Msa0772280 | Msa0968470 | -0.814688 | 1.356017e-51 | -8.615850e-47 |
| Msa0772280 | Msa0985180 | 0.800405 | 1.463494e-48 | -8.615850e-47 |
| Msa0772280 | Msa1011250 | 0.806956 | 6.394303e-50 | -8.615850e-47 |
| Msa0772280 | Msa1016960 | 0.802837 | 4.642363e-49 | -8.615850e-47 |
| Msa0772280 | Msa1023310 | 0.802872 | 4.564339e-49 | -8.615850e-47 |
| Msa0772280 | Msa1031460 | 0.832485 | 9.202446e-56 | -8.615850e-47 |
| Msa0772280 | Msa1062040 | 0.823244 | 1.537350e-53 | -8.615850e-47 |
| Msa0772280 | Msa1070540 | 0.847073 | 1.456268e-59 | -8.615850e-47 |
| Msa0772280 | Msa1101240 | 0.847090 | 1.440447e-59 | -8.615850e-47 |
| Msa0772280 | Msa1107200 | 0.836799 | 7.572797e-57 | -8.615850e-47 |
| Msa0772280 | Msa1122150 | 0.812997 | 3.198804e-51 | -8.615850e-47 |
| Msa0772280 | Msa1128270 | 0.807857 | 4.117226e-50 | -8.615850e-47 |
| Msa0772280 | Msa1137780 | 0.820624 | 6.215920e-53 | -8.615850e-47 |
| Msa0772280 | Msa1140630 | 0.826226 | 3.047970e-54 | -8.615850e-47 |
| Msa0772280 | Msa1150780 | 0.818590 | 1.810166e-52 | -8.615850e-47 |
| Msa0772280 | Msa1160560 | 0.820212 | 7.729766e-53 | -8.615850e-47 |
| Msa0772280 | Msa1168640 | 0.806866 | 6.680962e-50 | -8.615850e-47 |
| Msa0772280 | Msa1176170 | 0.817999 | 2.463850e-52 | -8.615850e-47 |
| Msa0772280 | Msa1183140 | 0.849410 | 3.291305e-60 | -8.615850e-47 |
| Msa0772280 | Msa1208450 | -0.811471 | 6.885983e-51 | -8.615850e-47 |
| Msa0772280 | Msa1208990 | 0.808911 | 2.453559e-50 | -8.615850e-47 |
| Msa0772280 | Msa1212050 | 0.803548 | 3.307365e-49 | -8.615850e-47 |
| Msa0772280 | Msa1214170 | 0.802423 | 5.649764e-49 | -8.615850e-47 |
| Msa0772280 | Msa1229480 | 0.811618 | 6.397176e-51 | -8.615850e-47 |
| Msa0772280 | Msa1236440 | 0.810425 | 1.159947e-50 | -8.615850e-47 |
| Msa0772280 | Msa1245440 | 0.837333 | 5.530170e-57 | -8.615850e-47 |
| Msa0772280 | Msa1259860 | 0.838504 | 2.765338e-57 | -8.615850e-47 |
| Msa0772280 | Msa1260060 | 0.805666 | 1.195709e-49 | -8.615850e-47 |
| Msa0772280 | Msa1260680 | 0.806706 | 7.219760e-50 | -8.615850e-47 |
| Msa0772280 | Msa1272010 | 0.801270 | 9.745385e-49 | -8.615850e-47 |
| Msa0772280 | Msa1277670 | 0.806379 | 8.462801e-50 | -8.615850e-47 |
| Msa0772280 | Msa1285360 | -0.801261 | 9.785603e-49 | -8.615850e-47 |
| Msa0772280 | Msa1298390 | -0.812974 | 3.235633e-51 | -8.615850e-47 |
| Msa0772280 | Msa1307160 | 0.805246 | 1.464788e-49 | -8.615850e-47 |
| Msa0772280 | Msa1307180 | 0.818831 | 1.596082e-52 | -8.615850e-47 |
| Msa0772280 | Msa1309760 | 0.836088 | 1.148486e-56 | -8.615850e-47 |
| Msa0772280 | Msa1316360 | 0.816338 | 5.823030e-52 | -8.615850e-47 |
| Msa0772280 | Msa1330920 | 0.803032 | 4.229629e-49 | -8.615850e-47 |
| Msa0772280 | Msa1359400 | 0.840913 | 6.530971e-58 | -8.615850e-47 |
| Msa0772280 | Msa1363820 | -0.802441 | 5.601004e-49 | -8.615850e-47 |
| Msa0772280 | Msa1364080 | 0.812899 | 3.361449e-51 | -8.615850e-47 |
| Msa0772280 | Msa1368360 | 0.829326 | 5.479924e-55 | -8.615850e-47 |
| Msa0772280 | Msa1368610 | 0.835353 | 1.762874e-56 | -8.615850e-47 |
| Msa0772280 | Msa1369920 | -0.844668 | 6.556049e-59 | -8.615850e-47 |
| Msa0772280 | Msa1376550 | -0.802976 | 4.345251e-49 | -8.615850e-47 |
| Msa0772280 | Msa1379020 | 0.842439 | 2.584326e-58 | -8.615850e-47 |
| Msa0772280 | Msa1407760 | 0.812054 | 5.140914e-51 | -8.615850e-47 |
| Msa0772280 | Msa1407880 | 0.851069 | 1.127869e-60 | -8.615850e-47 |
| Msa0772280 | Msa1412130 | 0.812262 | 4.631500e-51 | -8.615850e-47 |
| Msa0772280 | Msa1419840 | 0.814098 | 1.831339e-51 | -8.615850e-47 |
| Msa0772280 | Msa1425260 | 0.801361 | 9.337012e-49 | -8.615850e-47 |
| Msa0772280 | Msa1437730 | 0.801152 | 1.030576e-48 | -8.615850e-47 |
| Msa0772280 | Msa1442920 | 0.805701 | 1.175607e-49 | -8.615850e-47 |
| Msa0130850 | Msa0772280 | 0.801896 | 7.250695e-49 | -8.615850e-47 |
| Msa0138020 | Msa0772280 | 0.801789 | 7.629600e-49 | -8.615850e-47 |
| Msa0144530 | Msa0772280 | 0.826220 | 3.057536e-54 | -8.615850e-47 |
| Msa0152560 | Msa0772280 | 0.800399 | 1.467867e-48 | -8.615850e-47 |
| Msa0160960 | Msa0772280 | 0.818256 | 2.155478e-52 | -8.615850e-47 |
| Msa0162630 | Msa0772280 | 0.807724 | 4.395473e-50 | -8.615850e-47 |
| Msa0183910 | Msa0772280 | 0.807936 | 3.962690e-50 | -8.615850e-47 |
| Msa0224130 | Msa0772280 | 0.814447 | 1.533926e-51 | -8.615850e-47 |
| Msa0227360 | Msa0772280 | 0.809798 | 1.583606e-50 | -8.615850e-47 |
| Msa0231920 | Msa0772280 | 0.817119 | 3.890426e-52 | -8.615850e-47 |
| Msa0370580 | Msa0772280 | -0.837768 | 4.276805e-57 | -8.615850e-47 |
| Msa0380400 | Msa0772280 | -0.801496 | 8.759121e-49 | -8.615850e-47 |
| Msa0388360 | Msa0772280 | 0.826071 | 3.317962e-54 | -8.615850e-47 |
| Msa0388730 | Msa0772280 | 0.810551 | 1.089840e-50 | -8.615850e-47 |
| Msa0403470 | Msa0772280 | -0.832389 | 9.722324e-56 | -8.615850e-47 |
| Msa0428200 | Msa0772280 | 0.832297 | 1.024610e-55 | -8.615850e-47 |
| Msa0431900 | Msa0772280 | 0.837315 | 5.588957e-57 | -8.615850e-47 |
| Msa0456770 | Msa0772280 | 0.800385 | 1.477787e-48 | -8.615850e-47 |
| Msa0470880 | Msa0772280 | 0.805975 | 1.029835e-49 | -8.615850e-47 |
| Msa0474560 | Msa0772280 | 0.805152 | 1.532129e-49 | -8.615850e-47 |
| Msa0476170 | Msa0772280 | -0.805265 | 1.451058e-49 | -8.615850e-47 |
| Msa0265270 | Msa0772280 | 0.816864 | 4.437512e-52 | -8.615850e-47 |
| Msa0271220 | Msa0772280 | 0.816917 | 4.317924e-52 | -8.615850e-47 |
| Msa0302840 | Msa0772280 | 0.809924 | 1.487310e-50 | -8.615850e-47 |
| Msa0304730 | Msa0772280 | 0.815276 | 1.004228e-51 | -8.615850e-47 |
| Msa0307960 | Msa0772280 | 0.802242 | 6.157016e-49 | -8.615850e-47 |
| Msa0333970 | Msa0772280 | -0.800655 | 1.301410e-48 | -8.615850e-47 |
| Msa0355550 | Msa0772280 | 0.808220 | 3.446261e-50 | -8.615850e-47 |
| Msa0512950 | Msa0772280 | -0.804219 | 2.399848e-49 | -8.615850e-47 |
| Msa0518170 | Msa0772280 | 0.809432 | 1.897961e-50 | -8.615850e-47 |
| Msa0519160 | Msa0772280 | 0.829078 | 6.293967e-55 | -8.615850e-47 |
| Msa0520770 | Msa0772280 | 0.835264 | 1.856608e-56 | -8.615850e-47 |
| Msa0529000 | Msa0772280 | 0.806315 | 8.730399e-50 | -8.615850e-47 |
| Msa0545050 | Msa0772280 | 0.862612 | 4.481363e-64 | -8.615850e-47 |
| Msa0574930 | Msa0772280 | 0.808306 | 3.304461e-50 | -8.615850e-47 |
| Msa0576120 | Msa0772280 | -0.816267 | 6.038514e-52 | -8.615850e-47 |
| Msa0584580 | Msa0772280 | 0.804323 | 2.282429e-49 | -8.615850e-47 |
| Msa0584600 | Msa0772280 | 0.812590 | 3.927656e-51 | -8.615850e-47 |
| Msa0600590 | Msa0772280 | 0.857266 | 1.835225e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772280 | MtrunA17_Chr5g0404651 | 99.006 | 503 | 5 | 0 | 1 | 503 | 1 | 503 | 0.0 | 1035 |
| Msa0772280 | MtrunA17_Chr8g0372701 | 48.069 | 466 | 230 | 5 | 7 | 469 | 17 | 473 | 6.73e-160 | 463 |
| Msa0772280 | MtrunA17_Chr2g0315911 | 44.924 | 463 | 242 | 5 | 7 | 465 | 1 | 454 | 2.61e-144 | 422 |
| Msa0772280 | MtrunA17_Chr2g0315991 | 45.905 | 464 | 235 | 6 | 7 | 468 | 1 | 450 | 1.82e-143 | 420 |
| Msa0772280 | MtrunA17_Chr2g0315921 | 46.429 | 448 | 224 | 9 | 11 | 450 | 3 | 442 | 2.78e-139 | 409 |
| Msa0772280 | MtrunA17_Chr2g0315971 | 45.497 | 433 | 226 | 4 | 18 | 450 | 8 | 430 | 6.75e-137 | 412 |
| Msa0772280 | MtrunA17_Chr2g0315971 | 50.735 | 272 | 126 | 4 | 177 | 446 | 438 | 703 | 4.14e-88 | 285 |
| Msa0772280 | MtrunA17_Chr2g0315981 | 42.921 | 445 | 247 | 3 | 18 | 460 | 8 | 447 | 4.83e-135 | 398 |
| Msa0772280 | MtrunA17_Chr2g0316041 | 46.384 | 401 | 203 | 6 | 68 | 465 | 1 | 392 | 2.28e-125 | 373 |
| Msa0772280 | MtrunA17_Chr2g0316021 | 40.899 | 467 | 229 | 6 | 19 | 485 | 9 | 428 | 7.75e-125 | 371 |
| Msa0772280 | MtrunA17_Chr5g0404661 | 40.217 | 460 | 251 | 6 | 9 | 450 | 21 | 474 | 8.26e-124 | 370 |
| Msa0772280 | MtrunA17_Chr2g0292561 | 40.756 | 476 | 241 | 8 | 11 | 462 | 7 | 465 | 1.54e-121 | 364 |
| Msa0772280 | MtrunA17_Chr1g0155131 | 41.667 | 468 | 233 | 7 | 13 | 454 | 6 | 459 | 6.17e-120 | 360 |
| Msa0772280 | MtrunA17_Chr6g0452391 | 39.785 | 465 | 238 | 9 | 13 | 446 | 6 | 459 | 4.89e-114 | 347 |
| Msa0772280 | MtrunA17_Chr4g0072491 | 39.752 | 483 | 245 | 8 | 14 | 460 | 5 | 477 | 1.69e-113 | 345 |
| Msa0772280 | MtrunA17_Chr7g0215951 | 39.278 | 471 | 241 | 9 | 11 | 447 | 2 | 461 | 4.62e-113 | 343 |
| Msa0772280 | MtrunA17_Chr4g0059811 | 38.413 | 479 | 248 | 8 | 11 | 451 | 7 | 476 | 3.12e-112 | 342 |
| Msa0772280 | MtrunA17_Chr6g0452371 | 39.871 | 464 | 239 | 8 | 13 | 446 | 8 | 461 | 1.10e-111 | 340 |
| Msa0772280 | MtrunA17_Chr6g0452451 | 37.924 | 472 | 243 | 7 | 13 | 445 | 8 | 468 | 1.28e-108 | 333 |
| Msa0772280 | MtrunA17_Chr1g0155121 | 38.771 | 472 | 237 | 9 | 13 | 446 | 4 | 461 | 1.29e-106 | 327 |
| Msa0772280 | MtrunA17_Chr6g0452401 | 37.473 | 459 | 234 | 7 | 30 | 446 | 1 | 448 | 4.09e-104 | 320 |
| Msa0772280 | MtrunA17_Chr6g0466811 | 39.640 | 444 | 237 | 7 | 19 | 446 | 23 | 451 | 1.80e-103 | 319 |
| Msa0772280 | MtrunA17_Chr3g0134831 | 46.844 | 301 | 138 | 4 | 168 | 453 | 1 | 294 | 3.44e-100 | 303 |
| Msa0772280 | MtrunA17_Chr6g0452411 | 41.645 | 377 | 172 | 5 | 107 | 446 | 1 | 366 | 2.74e-98 | 303 |
| Msa0772280 | MtrunA17_Chr2g0308991 | 36.807 | 451 | 243 | 8 | 23 | 446 | 9 | 444 | 5.19e-97 | 303 |
| Msa0772280 | MtrunA17_Chr6g0452361 | 52.814 | 231 | 104 | 2 | 221 | 446 | 1 | 231 | 1.98e-81 | 254 |
| Msa0772280 | MtrunA17_Chr6g0452481 | 46.640 | 253 | 129 | 2 | 200 | 446 | 2 | 254 | 1.46e-73 | 235 |
| Msa0772280 | MtrunA17_Chr7g0276031 | 32.658 | 395 | 221 | 10 | 63 | 453 | 56 | 409 | 1.77e-65 | 219 |
| Msa0772280 | MtrunA17_Chr3g0127381 | 33.424 | 368 | 209 | 9 | 71 | 434 | 66 | 401 | 1.65e-63 | 214 |
| Msa0772280 | MtrunA17_Chr8g0346371 | 33.989 | 356 | 204 | 5 | 100 | 453 | 92 | 418 | 6.19e-61 | 207 |
| Msa0772280 | MtrunA17_Chr5g0404671 | 59.048 | 105 | 42 | 1 | 343 | 446 | 1 | 105 | 8.35e-41 | 144 |
| Msa0772280 | MtrunA17_Chr5g0404681 | 46.281 | 121 | 58 | 1 | 155 | 275 | 39 | 152 | 8.96e-37 | 133 |
| Msa0772280 | MtrunA17_Chr5g0404691 | 41.250 | 160 | 78 | 4 | 300 | 453 | 7 | 156 | 1.98e-34 | 127 |
| Msa0772280 | MtrunA17_Chr1g0148871 | 48.246 | 114 | 58 | 1 | 333 | 446 | 19 | 131 | 3.11e-29 | 113 |
| Msa0772280 | MtrunA17_Chr3g0145011 | 39.216 | 153 | 74 | 7 | 241 | 382 | 166 | 310 | 1.16e-15 | 79.0 |
| Msa0772280 | MtrunA17_Chr3g0141901 | 38.562 | 153 | 75 | 7 | 241 | 382 | 163 | 307 | 1.89e-15 | 78.2 |
| Msa0772280 | MtrunA17_Chr7g0217421 | 36.612 | 183 | 102 | 6 | 215 | 389 | 40 | 216 | 3.07e-15 | 77.8 |
| Msa0772280 | MtrunA17_Chr3g0108321 | 34.731 | 167 | 88 | 6 | 226 | 380 | 171 | 328 | 1.10e-14 | 75.5 |
| Msa0772280 | MtrunA17_Chr8g0362771 | 30.851 | 188 | 106 | 6 | 230 | 400 | 252 | 432 | 5.99e-14 | 74.7 |
| Msa0772280 | MtrunA17_Chr7g0262801 | 34.783 | 161 | 92 | 5 | 229 | 381 | 202 | 357 | 6.11e-14 | 73.9 |
| Msa0772280 | MtrunA17_Chr1g0182711 | 34.161 | 161 | 93 | 5 | 229 | 381 | 203 | 358 | 1.28e-13 | 72.8 |
| Msa0772280 | MtrunA17_Chr4g0050561 | 31.429 | 175 | 108 | 5 | 214 | 380 | 156 | 326 | 2.97e-13 | 71.6 |
| Msa0772280 | MtrunA17_Chr1g0192151 | 31.792 | 173 | 97 | 7 | 229 | 389 | 182 | 345 | 3.55e-13 | 71.2 |
| Msa0772280 | MtrunA17_Chr4g0014731 | 31.792 | 173 | 97 | 7 | 229 | 389 | 183 | 346 | 4.22e-13 | 71.2 |
| Msa0772280 | MtrunA17_Chr1g0211521 | 41.121 | 107 | 49 | 6 | 376 | 471 | 5 | 108 | 7.81e-13 | 65.1 |
| Msa0772280 | MtrunA17_Chr2g0315961 | 46.875 | 64 | 33 | 1 | 376 | 439 | 1 | 63 | 1.88e-12 | 62.8 |
| Msa0772280 | MtrunA17_Chr7g0260601 | 34.659 | 176 | 96 | 8 | 216 | 380 | 242 | 409 | 4.11e-12 | 68.9 |
| Msa0772280 | MtrunA17_Chr6g0476861 | 33.333 | 183 | 103 | 8 | 209 | 380 | 192 | 366 | 4.37e-12 | 68.6 |
| Msa0772280 | MtrunA17_Chr3g0143721 | 31.746 | 189 | 112 | 7 | 215 | 393 | 250 | 431 | 1.23e-11 | 67.4 |
| Msa0772280 | MtrunA17_Chr7g0248361 | 28.800 | 250 | 154 | 10 | 216 | 447 | 194 | 437 | 1.37e-11 | 67.0 |
| Msa0772280 | MtrunA17_Chr3g0135761 | 28.814 | 177 | 110 | 5 | 230 | 398 | 237 | 405 | 1.46e-11 | 67.0 |
| Msa0772280 | MtrunA17_Chr3g0094871 | 27.273 | 275 | 165 | 10 | 203 | 452 | 3 | 267 | 2.68e-11 | 65.5 |
| Msa0772280 | MtrunA17_Chr7g0255721 | 31.818 | 154 | 89 | 6 | 241 | 386 | 411 | 556 | 2.84e-11 | 66.2 |
| Msa0772280 | MtrunA17_Chr4g0031821 | 32.292 | 192 | 111 | 8 | 209 | 389 | 315 | 498 | 3.14e-11 | 65.9 |
| Msa0772280 | MtrunA17_Chr7g0255651 | 29.375 | 160 | 99 | 5 | 243 | 393 | 311 | 465 | 3.84e-11 | 65.5 |
| Msa0772280 | MtrunA17_Chr3g0135781 | 32.895 | 152 | 86 | 6 | 230 | 373 | 70 | 213 | 3.84e-11 | 62.8 |
| Msa0772280 | MtrunA17_Chr8g0388371 | 27.919 | 197 | 112 | 7 | 230 | 401 | 419 | 610 | 5.96e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0772280 | AT5G17760.1 | 55.150 | 466 | 189 | 6 | 1 | 452 | 1 | 460 | 4.46e-180 | 515 |
| Msa0772280 | AT5G17740.1 | 52.442 | 471 | 200 | 8 | 1 | 457 | 1 | 461 | 3.92e-174 | 501 |
| Msa0772280 | AT5G17730.1 | 51.965 | 458 | 203 | 7 | 1 | 451 | 1 | 448 | 1.60e-167 | 482 |
| Msa0772280 | AT3G50930.1 | 49.790 | 476 | 228 | 4 | 7 | 474 | 55 | 527 | 2.51e-164 | 478 |
| Msa0772280 | AT2G18190.1 | 47.764 | 492 | 221 | 6 | 9 | 491 | 11 | 475 | 1.41e-162 | 470 |
| Msa0772280 | AT2G18193.1 | 50.452 | 442 | 199 | 3 | 16 | 451 | 17 | 444 | 3.37e-162 | 469 |
| Msa0772280 | AT3G50940.1 | 50.000 | 422 | 204 | 4 | 28 | 449 | 30 | 444 | 3.56e-156 | 452 |
| Msa0772280 | AT5G17750.1 | 47.420 | 407 | 180 | 4 | 1 | 404 | 1 | 376 | 9.31e-141 | 410 |
| Msa0772280 | AT5G17760.2 | 52.134 | 328 | 143 | 3 | 1 | 320 | 1 | 322 | 1.19e-117 | 350 |
| Msa0772280 | AT1G43910.1 | 40.717 | 474 | 233 | 9 | 1 | 451 | 4 | 452 | 1.68e-115 | 349 |
| Msa0772280 | AT5G40000.1 | 38.889 | 486 | 240 | 11 | 14 | 470 | 8 | 465 | 2.22e-115 | 348 |
| Msa0772280 | AT4G05380.1 | 42.208 | 462 | 232 | 12 | 6 | 450 | 8 | 451 | 3.47e-115 | 348 |
| Msa0772280 | AT3G28610.1 | 40.215 | 465 | 225 | 9 | 17 | 449 | 6 | 449 | 9.16e-114 | 345 |
| Msa0772280 | AT3G28600.1 | 40.000 | 470 | 229 | 10 | 15 | 452 | 5 | 453 | 1.17e-113 | 344 |
| Msa0772280 | AT4G25835.1 | 40.498 | 442 | 229 | 5 | 14 | 431 | 5 | 436 | 1.77e-113 | 345 |
| Msa0772280 | AT3G28540.2 | 39.744 | 468 | 237 | 8 | 7 | 443 | 1 | 454 | 6.44e-113 | 343 |
| Msa0772280 | AT3G28540.1 | 39.744 | 468 | 237 | 8 | 7 | 443 | 1 | 454 | 7.37e-113 | 343 |
| Msa0772280 | AT5G57480.1 | 39.278 | 471 | 238 | 8 | 14 | 448 | 5 | 463 | 8.41e-111 | 338 |
| Msa0772280 | AT3G28510.1 | 38.723 | 470 | 252 | 7 | 7 | 449 | 1 | 461 | 3.28e-109 | 335 |
| Msa0772280 | AT4G30250.2 | 40.127 | 471 | 238 | 8 | 11 | 448 | 4 | 463 | 2.39e-107 | 330 |
| Msa0772280 | AT4G30250.1 | 40.127 | 471 | 238 | 8 | 11 | 448 | 2 | 461 | 3.57e-107 | 329 |
| Msa0772280 | AT5G40010.1 | 38.022 | 455 | 241 | 8 | 13 | 436 | 7 | 451 | 2.74e-106 | 327 |
| Msa0772280 | AT3G28570.1 | 38.723 | 470 | 233 | 11 | 18 | 465 | 10 | 446 | 4.96e-103 | 316 |
| Msa0772280 | AT3G28570.2 | 38.723 | 470 | 233 | 11 | 18 | 465 | 17 | 453 | 8.03e-103 | 316 |
| Msa0772280 | AT3G28580.1 | 37.310 | 461 | 243 | 11 | 7 | 436 | 1 | 446 | 8.56e-101 | 312 |
| Msa0772280 | AT3G28520.1 | 37.449 | 486 | 246 | 11 | 22 | 463 | 2 | 473 | 6.82e-99 | 306 |
| Msa0772280 | AT3G28600.2 | 50.853 | 293 | 125 | 5 | 178 | 452 | 123 | 414 | 5.01e-97 | 300 |
| Msa0772280 | AT3G29800.1 | 36.638 | 464 | 227 | 14 | 26 | 479 | 5 | 411 | 1.38e-89 | 281 |
| Msa0772280 | AT3G28580.2 | 35.666 | 443 | 253 | 11 | 7 | 436 | 1 | 424 | 1.03e-88 | 280 |
| Msa0772280 | AT2G46620.1 | 35.864 | 382 | 202 | 10 | 63 | 434 | 55 | 403 | 1.04e-72 | 239 |
| Msa0772280 | AT4G05340.1 | 63.636 | 77 | 28 | 0 | 324 | 400 | 17 | 93 | 3.10e-28 | 108 |
| Msa0772280 | AT3G28560.1 | 27.679 | 224 | 143 | 5 | 7 | 224 | 1 | 211 | 7.48e-23 | 98.2 |
| Msa0772280 | AT5G43010.1 | 38.562 | 153 | 75 | 7 | 241 | 382 | 163 | 307 | 4.13e-15 | 77.8 |
| Msa0772280 | AT1G45000.1 | 38.562 | 153 | 75 | 7 | 241 | 382 | 163 | 307 | 5.82e-15 | 77.0 |
| Msa0772280 | AT5G58290.1 | 34.731 | 167 | 88 | 6 | 226 | 380 | 164 | 321 | 7.74e-15 | 77.0 |
| Msa0772280 | AT2G20140.1 | 34.783 | 161 | 92 | 5 | 229 | 381 | 200 | 355 | 3.82e-14 | 75.1 |
| Msa0772280 | AT4G29040.1 | 34.783 | 161 | 92 | 5 | 229 | 381 | 200 | 355 | 5.86e-14 | 74.3 |
| Msa0772280 | AT1G09100.1 | 32.370 | 173 | 96 | 7 | 229 | 389 | 182 | 345 | 9.23e-14 | 73.6 |
| Msa0772280 | AT5G20000.1 | 31.217 | 189 | 117 | 6 | 214 | 393 | 158 | 342 | 4.00e-13 | 71.6 |
| Msa0772280 | AT5G19990.1 | 31.217 | 189 | 117 | 6 | 214 | 393 | 158 | 342 | 4.25e-13 | 71.6 |
| Msa0772280 | AT5G19990.3 | 31.217 | 189 | 117 | 6 | 214 | 393 | 158 | 342 | 4.25e-13 | 71.6 |
| Msa0772280 | AT5G19990.2 | 31.429 | 175 | 108 | 5 | 214 | 380 | 100 | 270 | 6.54e-13 | 70.5 |
| Msa0772280 | AT3G02450.1 | 32.995 | 197 | 108 | 8 | 243 | 428 | 359 | 542 | 1.68e-12 | 70.5 |
| Msa0772280 | AT5G42270.1 | 30.978 | 184 | 111 | 6 | 215 | 389 | 248 | 424 | 1.04e-11 | 67.8 |
| Msa0772280 | AT3G56690.1 | 25.651 | 269 | 152 | 11 | 126 | 382 | 659 | 891 | 9.72e-11 | 65.1 |
Find 88 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATAAGATTCTTCATTTC+TGG | 0.112367 | 5_2:-46576003 | None:intergenic |
| TACTGCTAATAGGTCTATTT+TGG | 0.170805 | 5_2:+46576233 | Msa0772280:CDS |
| AGTTTCCTTGTTTAAAATAT+TGG | 0.206852 | 5_2:-46578990 | None:intergenic |
| TCCCATGATAATCCTTTCTT+TGG | 0.247677 | 5_2:+46578383 | Msa0772280:CDS |
| TTAACTTTATAGATGGATTA+TGG | 0.296200 | 5_2:+46578201 | Msa0772280:CDS |
| CTCACAATCCGGTTAGAAAA+AGG | 0.313094 | 5_2:+46575643 | Msa0772280:CDS |
| AAAGTACAAGGAAGTTGTTT+TGG | 0.317579 | 5_2:+46575819 | Msa0772280:CDS |
| TGGATGCAGTTGACGCTATC+TGG | 0.331920 | 5_2:+46578173 | Msa0772280:intron |
| TTGTATGGTCCTCCAGGAAC+TGG | 0.332354 | 5_2:+46576102 | Msa0772280:CDS |
| AAACTAGATTTCCCAGTTCC+TGG | 0.339978 | 5_2:-46576114 | None:intergenic |
| GGATTACTTAACTTTATAGA+TGG | 0.342287 | 5_2:+46578194 | Msa0772280:CDS |
| GTTGTTGAAGAGGAAGAAAA+TGG | 0.344152 | 5_2:+46578511 | Msa0772280:CDS |
| AACACTGCTTATTGTTATAG+TGG | 0.352047 | 5_2:+46575919 | Msa0772280:CDS |
| GTAGTAACATTAATGTTAAT+CGG | 0.359491 | 5_2:+46578967 | Msa0772280:three_prime_UTR |
| ATAAGAAAGTTGGTAGGGCT+TGG | 0.373964 | 5_2:+46576064 | Msa0772280:CDS |
| ATGTGCATGTCCATTCTTCC+TGG | 0.376522 | 5_2:-46578299 | None:intergenic |
| ATGTTGCTTATCAAGGCTTA+AGG | 0.385316 | 5_2:+46578761 | Msa0772280:three_prime_UTR |
| CATCATGCTGCTTCGTTCCA+TGG | 0.388268 | 5_2:+46575405 | Msa0772280:CDS |
| AAAATAGTTCTAGTACAGTT+TGG | 0.388573 | 5_2:-46578838 | None:intergenic |
| TGCTTCTTGCTACTGCTAAT+AGG | 0.398837 | 5_2:+46576223 | Msa0772280:CDS |
| CCTTTCTTTGGAGAGATTGA+AGG | 0.403654 | 5_2:+46578395 | Msa0772280:CDS |
| ATGTCTTATTGTTCTTATGA+AGG | 0.415116 | 5_2:+46578326 | Msa0772280:CDS |
| CTGGATCTAATCTTTCTTTG+TGG | 0.418635 | 5_2:-46578265 | None:intergenic |
| ATCTAGTTTGATTGCTGCTA+TGG | 0.422293 | 5_2:+46576128 | Msa0772280:CDS |
| AACATTTGAAACACTTGCAA+TGG | 0.424026 | 5_2:+46575978 | Msa0772280:CDS |
| ATTGTTATAGTGGTGTGAAA+TGG | 0.427762 | 5_2:+46575929 | Msa0772280:CDS |
| TTTGTAATTGTGTTCAGCTA+TGG | 0.430355 | 5_2:+46578688 | Msa0772280:exon |
| AAACGTGGTTATTTGTTGTA+TGG | 0.444569 | 5_2:+46576087 | Msa0772280:CDS |
| CTTCCTGGCCTTAAAAGTGC+TGG | 0.444730 | 5_2:-46578284 | None:intergenic |
| TTGTTATAGTGGTGTGAAAT+GGG | 0.444869 | 5_2:+46575930 | Msa0772280:CDS |
| CTCCAAAGAAAGGATTATCA+TGG | 0.452994 | 5_2:-46578385 | None:intergenic |
| TTGTTTGGTTTGTCAAGTGA+AGG | 0.453967 | 5_2:-46575313 | None:intergenic |
| TTCGTTCTTCATCAATTCCT+CGG | 0.463547 | 5_2:-46578456 | None:intergenic |
| CCTTCTCCATGCCTCCTCTC+AGG | 0.464945 | 5_2:-46576288 | None:intergenic |
| AATTCCTCGGCAACTTGTGC+AGG | 0.473590 | 5_2:-46578443 | None:intergenic |
| TATTTGTTGTATGGTCCTCC+AGG | 0.478870 | 5_2:+46576096 | Msa0772280:CDS |
| TAAACAGCAAAATGATATAC+AGG | 0.483102 | 5_2:+46576314 | Msa0772280:CDS |
| GATTATGAGAAGTAAAGAAT+GGG | 0.489931 | 5_2:+46578871 | Msa0772280:three_prime_UTR |
| CTATGATGAGTGTGAGTGTA+GGG | 0.494050 | 5_2:-46575501 | None:intergenic |
| CCTTCAATCTCTCCAAAGAA+AGG | 0.498070 | 5_2:-46578395 | None:intergenic |
| GATATATTTGATCTTCAACT+TGG | 0.500692 | 5_2:+46576168 | Msa0772280:CDS |
| TGATTATGAGAAGTAAAGAA+TGG | 0.507488 | 5_2:+46578870 | Msa0772280:three_prime_UTR |
| AGGAAAACCGTTGTACATAT+CGG | 0.511083 | 5_2:-46575677 | None:intergenic |
| CTCATCATAGAAGAATCAAC+AGG | 0.511570 | 5_2:+46575514 | Msa0772280:CDS |
| CAGCATGATGGAAGCTGTCA+TGG | 0.517798 | 5_2:-46575392 | None:intergenic |
| AGGTAGCCACGGATTGGTTG+AGG | 0.525058 | 5_2:-46575442 | None:intergenic |
| ATGTTGTTGTTACTCAAAGA+AGG | 0.525296 | 5_2:+46578639 | Msa0772280:CDS |
| TAAGCTGAGAAAATTGTAGA+TGG | 0.528567 | 5_2:-46575364 | None:intergenic |
| GGTAGCGAAAGGTGTTGTAA+AGG | 0.529197 | 5_2:-46575462 | None:intergenic |
| GTTTGGTTTGTCAAGTGAAG+GGG | 0.530519 | 5_2:-46575311 | None:intergenic |
| GACGCGGAGGCGACGCTCGA+AGG | 0.532422 | 5_2:+46578479 | Msa0772280:CDS |
| TTTGGTTTGTCAAGTGAAGG+GGG | 0.537343 | 5_2:-46575310 | None:intergenic |
| TTAGCTTTATCAAGAATGAA+AGG | 0.540681 | 5_2:-46575853 | None:intergenic |
| TGTTTGGTTTGTCAAGTGAA+GGG | 0.549864 | 5_2:-46575312 | None:intergenic |
| GCAAGTGTTTCAAATGTTGA+AGG | 0.550183 | 5_2:-46575973 | None:intergenic |
| TCATATATATTGAGAAACAT+AGG | 0.557343 | 5_2:+46575256 | None:intergenic |
| TTGTAAAGGTAGCCACGGAT+TGG | 0.558453 | 5_2:-46575448 | None:intergenic |
| GAGAAAATTGTAGATGGTGA+AGG | 0.561688 | 5_2:-46575358 | None:intergenic |
| GATTTGTCAAGTTGTTGAAG+AGG | 0.562772 | 5_2:+46578501 | Msa0772280:CDS |
| AGGAATGAGTTCTTGTGCCA+TGG | 0.564959 | 5_2:-46575422 | None:intergenic |
| CCTGAGAGGAGGCATGGAGA+AGG | 0.567782 | 5_2:+46576288 | Msa0772280:CDS |
| TCCAAAGAAAGGATTATCAT+GGG | 0.577137 | 5_2:-46578384 | None:intergenic |
| GATATTCCTGAGAGGAGGCA+TGG | 0.578540 | 5_2:+46576282 | Msa0772280:CDS |
| TGTACTATTACATCACTAAG+TGG | 0.579899 | 5_2:+46578916 | Msa0772280:three_prime_UTR |
| GATGGATTATGGTCAAGTTG+TGG | 0.580818 | 5_2:+46578212 | Msa0772280:CDS |
| CAAGTGTTTCAAATGTTGAA+GGG | 0.590645 | 5_2:-46575972 | None:intergenic |
| CATGGAACGAAGCAGCATGA+TGG | 0.591190 | 5_2:-46575404 | None:intergenic |
| TGTATGGTCCTCCAGGAACT+GGG | 0.595574 | 5_2:+46576103 | Msa0772280:CDS |
| GTTGGTAGGGCTTGGAAACG+TGG | 0.595739 | 5_2:+46576072 | Msa0772280:CDS |
| ATTATGAGAAGTAAAGAATG+GGG | 0.599247 | 5_2:+46578872 | Msa0772280:three_prime_UTR |
| ACTCAGCTGCATCATAGACT+TGG | 0.603542 | 5_2:-46575549 | None:intergenic |
| CAAATGAATCTCCATTTGAG+AGG | 0.606336 | 5_2:-46575697 | None:intergenic |
| TTGAAGAGGAAGAAAATGGA+AGG | 0.607954 | 5_2:+46578515 | Msa0772280:CDS |
| AGTGTGAGTGTAGGGGAACG+TGG | 0.609142 | 5_2:-46575493 | None:intergenic |
| AGGACAAGAGGTTATAAGAG+AGG | 0.609200 | 5_2:+46578659 | Msa0772280:CDS |
| AGGTGTTGTAAAGGTAGCCA+CGG | 0.610393 | 5_2:-46575453 | None:intergenic |
| TCTATGATGAGTGTGAGTGT+AGG | 0.612777 | 5_2:-46575502 | None:intergenic |
| GTTACTCAAAGAAGGACAAG+AGG | 0.617295 | 5_2:+46578647 | Msa0772280:CDS |
| CTCATTCCTCAACCAATCCG+TGG | 0.640131 | 5_2:+46575436 | Msa0772280:CDS |
| GATGAAGAACGAAGACGCGG+AGG | 0.643880 | 5_2:+46578466 | Msa0772280:CDS |
| AACACCTGCACAAGTTGCCG+AGG | 0.645385 | 5_2:+46578439 | Msa0772280:CDS |
| GTATTGATATTCCTGAGAGG+AGG | 0.657296 | 5_2:+46576277 | Msa0772280:CDS |
| AAATTAACCGATATGTACAA+CGG | 0.665907 | 5_2:+46575670 | Msa0772280:CDS |
| TTATGAGAAGTAAAGAATGG+GGG | 0.673182 | 5_2:+46578873 | Msa0772280:three_prime_UTR |
| CTAGATTTCCCAGTTCCTGG+AGG | 0.685154 | 5_2:-46576111 | None:intergenic |
| TATGATGAGTGTGAGTGTAG+GGG | 0.700365 | 5_2:-46575500 | None:intergenic |
| GCAGTATTGATATTCCTGAG+AGG | 0.713312 | 5_2:+46576274 | Msa0772280:CDS |
| ATTGATGAAGAACGAAGACG+CGG | 0.719308 | 5_2:+46578463 | Msa0772280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATTAACAAACATAAAC+AGG | - | chr5_2:46576455-46576474 | None:intergenic | 15.0% |
| !! | TATGGTATGAAAAAATAAAT+AGG | - | chr5_2:46576564-46576583 | None:intergenic | 15.0% |
| !!! | ATTTTATAAATGCATTGATA+TGG | - | chr5_2:46576582-46576601 | None:intergenic | 15.0% |
| !! | TTCTCTAAATATTTGTTTAT+TGG | + | chr5_2:46576729-46576748 | Msa0772280:intron | 15.0% |
| !! | TTAAATTGTATAAATATCCA+CGG | - | chr5_2:46577742-46577761 | None:intergenic | 15.0% |
| !!! | AAAATGATTTCATTTTAGAT+AGG | + | chr5_2:46578019-46578038 | Msa0772280:intron | 15.0% |
| !! | TTTATAAAATTGAAGTGAAG+TGG | + | chr5_2:46576592-46576611 | Msa0772280:intron | 20.0% |
| !!! | ATTTTTTTTATCAGTAGCAA+TGG | + | chr5_2:46576814-46576833 | Msa0772280:intron | 20.0% |
| !! | ATACATTATGACATGAAATT+AGG | + | chr5_2:46576928-46576947 | Msa0772280:intron | 20.0% |
| !! | ATTGAAAGTTCTCTTTAATT+TGG | + | chr5_2:46577001-46577020 | Msa0772280:intron | 20.0% |
| !!! | CTAAAAAAATATGCCATTTT+AGG | - | chr5_2:46577113-46577132 | None:intergenic | 20.0% |
| !!! | TAGAGTCATTTTCTTATTAT+TGG | + | chr5_2:46577241-46577260 | Msa0772280:intron | 20.0% |
| !! | CAATAATTGGTTAAGAAATT+TGG | + | chr5_2:46577373-46577392 | Msa0772280:intron | 20.0% |
| !!! | TTAACTGATTTCATTTTAGA+TGG | + | chr5_2:46577991-46578010 | Msa0772280:intron | 20.0% |
| !!! | TAACTGATTTCATTTTAGAT+GGG | + | chr5_2:46577992-46578011 | Msa0772280:intron | 20.0% |
| !!! | TTAACTTTATAGATGGATTA+TGG | + | chr5_2:46578201-46578220 | Msa0772280:CDS | 20.0% |
| !! | GTAGTAACATTAATGTTAAT+CGG | + | chr5_2:46578967-46578986 | Msa0772280:three_prime_UTR | 20.0% |
| !!! | CTTTGAGAAAACATTTTGTT+TGG | - | chr5_2:46575331-46575350 | None:intergenic | 25.0% |
| !!! | TTTTGAGTCTTTCATTTTCA+GGG | - | chr5_2:46575597-46575616 | None:intergenic | 25.0% |
| !!! | ATTTTGAGTCTTTCATTTTC+AGG | - | chr5_2:46575598-46575617 | None:intergenic | 25.0% |
| !!! | TTGTGAGTTTTTTCTCTTTT+GGG | - | chr5_2:46575630-46575649 | None:intergenic | 25.0% |
| !!! | ATTGTGAGTTTTTTCTCTTT+TGG | - | chr5_2:46575631-46575650 | None:intergenic | 25.0% |
| ! | AAATTAACCGATATGTACAA+CGG | + | chr5_2:46575670-46575689 | Msa0772280:CDS | 25.0% |
| !!! | AAGTTTTGACAAAAAGTACA+AGG | + | chr5_2:46575807-46575826 | Msa0772280:CDS | 25.0% |
| !!! | TTAGCTTTATCAAGAATGAA+AGG | - | chr5_2:46575856-46575875 | None:intergenic | 25.0% |
| ! | ATGATAAGATTCTTCATTTC+TGG | - | chr5_2:46576006-46576025 | None:intergenic | 25.0% |
| !!! | AGAGAGTTTTATAAGAAAGT+TGG | + | chr5_2:46576054-46576073 | Msa0772280:CDS | 25.0% |
| !!! | AGTTTTATAAGAAAGTTGGT+AGG | + | chr5_2:46576058-46576077 | Msa0772280:CDS | 25.0% |
| !!! | GTTTTATAAGAAAGTTGGTA+GGG | + | chr5_2:46576059-46576078 | Msa0772280:CDS | 25.0% |
| ! | GATATATTTGATCTTCAACT+TGG | + | chr5_2:46576168-46576187 | Msa0772280:CDS | 25.0% |
| ! | TAAACAGCAAAATGATATAC+AGG | + | chr5_2:46576314-46576333 | Msa0772280:CDS | 25.0% |
| ! | AGCATATTACTAGAATTTCT+AGG | - | chr5_2:46576411-46576430 | None:intergenic | 25.0% |
| !!! | CTAATTTTTTCACAACCAAT+TGG | + | chr5_2:46576535-46576554 | Msa0772280:intron | 25.0% |
| ! | AAAATAAATAGGTCTCCAAT+TGG | - | chr5_2:46576553-46576572 | None:intergenic | 25.0% |
| !!! | ATTTTTTTCTAGATCCACTA+AGG | - | chr5_2:46576899-46576918 | None:intergenic | 25.0% |
| !!! | GTTTTAGTTCTTGTTGATTT+TGG | + | chr5_2:46576956-46576975 | Msa0772280:intron | 25.0% |
| ! | AAGAAAAAGAATTCCAATTG+TGG | + | chr5_2:46577047-46577066 | Msa0772280:intron | 25.0% |
| !! | TGATGATGATATATACCATA+GGG | - | chr5_2:46577471-46577490 | None:intergenic | 25.0% |
| !!! | TTGATGATGATATATACCAT+AGG | - | chr5_2:46577472-46577491 | None:intergenic | 25.0% |
| ! | CTATGTATGTAAAACAGAAA+GGG | - | chr5_2:46577597-46577616 | None:intergenic | 25.0% |
| !! | ATAATAGAAGTTTTACACGA+AGG | - | chr5_2:46577692-46577711 | None:intergenic | 25.0% |
| ! | TTCGTGTAAAACTTCTATTA+TGG | + | chr5_2:46577691-46577710 | Msa0772280:intron | 25.0% |
| ! | TACAGTTACTCAAAAAGAAT+TGG | - | chr5_2:46577969-46577988 | None:intergenic | 25.0% |
| ! | TGTCCTTGAAATTATAATGT+TGG | + | chr5_2:46578080-46578099 | Msa0772280:intron | 25.0% |
| !! | ATTTCTCATCTTGATTTTGA+TGG | + | chr5_2:46578149-46578168 | Msa0772280:intron | 25.0% |
| ! | GGATTACTTAACTTTATAGA+TGG | + | chr5_2:46578194-46578213 | Msa0772280:CDS | 25.0% |
| !! | ATGTCTTATTGTTCTTATGA+AGG | + | chr5_2:46578326-46578345 | Msa0772280:CDS | 25.0% |
| !!! | AATTTTAGCTTCAAACTACT+TGG | + | chr5_2:46578355-46578374 | Msa0772280:CDS | 25.0% |
| !! | AACAAAAATGTTGCTTATCA+AGG | + | chr5_2:46578754-46578773 | Msa0772280:three_prime_UTR | 25.0% |
| !! | TGTTGTAATCTTTTGCTAAT+AGG | + | chr5_2:46578796-46578815 | Msa0772280:three_prime_UTR | 25.0% |
| !!! | AAAATAGTTCTAGTACAGTT+TGG | - | chr5_2:46578841-46578860 | None:intergenic | 25.0% |
| ! | TGATTATGAGAAGTAAAGAA+TGG | + | chr5_2:46578870-46578889 | Msa0772280:three_prime_UTR | 25.0% |
| ! | GATTATGAGAAGTAAAGAAT+GGG | + | chr5_2:46578871-46578890 | Msa0772280:three_prime_UTR | 25.0% |
| ! | ATTATGAGAAGTAAAGAATG+GGG | + | chr5_2:46578872-46578891 | Msa0772280:three_prime_UTR | 25.0% |
| TAAGCTGAGAAAATTGTAGA+TGG | - | chr5_2:46575367-46575386 | None:intergenic | 30.0% | |
| ! | TTTGAGTCTTTCATTTTCAG+GGG | - | chr5_2:46575596-46575615 | None:intergenic | 30.0% |
| AAGAGAAAAAACTCACAATC+CGG | + | chr5_2:46575632-46575651 | Msa0772280:CDS | 30.0% | |
| ! | ATTTTTCGCCTTTTTCTAAC+CGG | - | chr5_2:46575654-46575673 | None:intergenic | 30.0% |
| ! | AAAGTACAAGGAAGTTGTTT+TGG | + | chr5_2:46575819-46575838 | Msa0772280:CDS | 30.0% |
| AACACTGCTTATTGTTATAG+TGG | + | chr5_2:46575919-46575938 | Msa0772280:CDS | 30.0% | |
| ATTGTTATAGTGGTGTGAAA+TGG | + | chr5_2:46575929-46575948 | Msa0772280:CDS | 30.0% | |
| TTGTTATAGTGGTGTGAAAT+GGG | + | chr5_2:46575930-46575949 | Msa0772280:CDS | 30.0% | |
| CAAGTGTTTCAAATGTTGAA+GGG | - | chr5_2:46575975-46575994 | None:intergenic | 30.0% | |
| ! | AACATTTGAAACACTTGCAA+TGG | + | chr5_2:46575978-46575997 | Msa0772280:CDS | 30.0% |
| !! | AAACGTGGTTATTTGTTGTA+TGG | + | chr5_2:46576087-46576106 | Msa0772280:CDS | 30.0% |
| ! | TACTGCTAATAGGTCTATTT+TGG | + | chr5_2:46576233-46576252 | Msa0772280:CDS | 30.0% |
| TCTTAGTGTAATAGTATGCT+TGG | - | chr5_2:46576702-46576721 | None:intergenic | 30.0% | |
| AGCAATGGAATTCAATATTC+CGG | + | chr5_2:46576829-46576848 | Msa0772280:intron | 30.0% | |
| AATAGCAAAGTGTGAGTTAT+TGG | + | chr5_2:46577087-46577106 | Msa0772280:intron | 30.0% | |
| !!! | GGCATATTTTTTTAGTAGCT+AGG | + | chr5_2:46577118-46577137 | Msa0772280:intron | 30.0% |
| TGTGTGCAAGAGAAAATTAA+AGG | - | chr5_2:46577280-46577299 | None:intergenic | 30.0% | |
| CTAACGTGTAGTTCAATAAT+TGG | + | chr5_2:46577360-46577379 | Msa0772280:intron | 30.0% | |
| !!! | TTGATAGTGAAATGGCATTT+TGG | - | chr5_2:46577523-46577542 | None:intergenic | 30.0% |
| GCTATGTATGTAAAACAGAA+AGG | - | chr5_2:46577598-46577617 | None:intergenic | 30.0% | |
| ! | TGTTTTACATACATAGCAAG+AGG | + | chr5_2:46577601-46577620 | Msa0772280:intron | 30.0% |
| !! | CAAAGGTCTTTGTTATTGAA+TGG | + | chr5_2:46577646-46577665 | Msa0772280:intron | 30.0% |
| ! | TTTTCATCAAAGATATTCCG+TGG | + | chr5_2:46577722-46577741 | Msa0772280:intron | 30.0% |
| CGACCAACATTATAATTTCA+AGG | - | chr5_2:46578086-46578105 | None:intergenic | 30.0% | |
| TCCAAAGAAAGGATTATCAT+GGG | - | chr5_2:46578387-46578406 | None:intergenic | 30.0% | |
| ! | ATGTTGTTGTTACTCAAAGA+AGG | + | chr5_2:46578639-46578658 | Msa0772280:CDS | 30.0% |
| TTTGTAATTGTGTTCAGCTA+TGG | + | chr5_2:46578688-46578707 | Msa0772280:exon | 30.0% | |
| TTATGAGAAGTAAAGAATGG+GGG | + | chr5_2:46578873-46578892 | Msa0772280:three_prime_UTR | 30.0% | |
| TGTACTATTACATCACTAAG+TGG | + | chr5_2:46578916-46578935 | Msa0772280:three_prime_UTR | 30.0% | |
| !! | TGTTTGGTTTGTCAAGTGAA+GGG | - | chr5_2:46575315-46575334 | None:intergenic | 35.0% |
| !! | TTGTTTGGTTTGTCAAGTGA+AGG | - | chr5_2:46575316-46575335 | None:intergenic | 35.0% |
| GAGAAAATTGTAGATGGTGA+AGG | - | chr5_2:46575361-46575380 | None:intergenic | 35.0% | |
| CTCATCATAGAAGAATCAAC+AGG | + | chr5_2:46575514-46575533 | Msa0772280:CDS | 35.0% | |
| AGGAAAACCGTTGTACATAT+CGG | - | chr5_2:46575680-46575699 | None:intergenic | 35.0% | |
| CAAATGAATCTCCATTTGAG+AGG | - | chr5_2:46575700-46575719 | None:intergenic | 35.0% | |
| GCAAGTGTTTCAAATGTTGA+AGG | - | chr5_2:46575976-46575995 | None:intergenic | 35.0% | |
| ! | ATCTAGTTTGATTGCTGCTA+TGG | + | chr5_2:46576128-46576147 | Msa0772280:CDS | 35.0% |
| CAGCAAAATGATATACAGGT+TGG | + | chr5_2:46576318-46576337 | Msa0772280:intron | 35.0% | |
| GCAATGGAATTCAATATTCC+GGG | + | chr5_2:46576830-46576849 | Msa0772280:intron | 35.0% | |
| GTAAGTGAACTTGTAAATCC+CGG | - | chr5_2:46576851-46576870 | None:intergenic | 35.0% | |
| ACACAGTCATATTCCACAAT+TGG | - | chr5_2:46577063-46577082 | None:intergenic | 35.0% | |
| ! | TGTGAGTTATTGGCCTAAAA+TGG | + | chr5_2:46577097-46577116 | Msa0772280:intron | 35.0% |
| ! | AATTTTCTCTTGCACACAAG+TGG | + | chr5_2:46577282-46577301 | Msa0772280:intron | 35.0% |
| TGAACTACACGTTAGTTCAA+TGG | - | chr5_2:46577355-46577374 | None:intergenic | 35.0% | |
| !! | TTCTCAAAAGCATTACCCTA+TGG | + | chr5_2:46577453-46577472 | Msa0772280:intron | 35.0% |
| TATTGTCTAATGCAATTGCG+TGG | - | chr5_2:46577547-46577566 | None:intergenic | 35.0% | |
| !! | TTGACAATACTTGCTGTCAA+AGG | + | chr5_2:46577629-46577648 | Msa0772280:intron | 35.0% |
| !! | AGGTCTTTGTTATTGAATGG+TGG | + | chr5_2:46577649-46577668 | Msa0772280:intron | 35.0% |
| !! | CTCATCTTGATTTTGATGGA+TGG | + | chr5_2:46578153-46578172 | Msa0772280:intron | 35.0% |
| CTGGATCTAATCTTTCTTTG+TGG | - | chr5_2:46578268-46578287 | None:intergenic | 35.0% | |
| ! | GATTAGATCCAGCACTTTTA+AGG | + | chr5_2:46578276-46578295 | Msa0772280:CDS | 35.0% |
| TCCCATGATAATCCTTTCTT+TGG | + | chr5_2:46578383-46578402 | Msa0772280:CDS | 35.0% | |
| CTCCAAAGAAAGGATTATCA+TGG | - | chr5_2:46578388-46578407 | None:intergenic | 35.0% | |
| TTCGTTCTTCATCAATTCCT+CGG | - | chr5_2:46578459-46578478 | None:intergenic | 35.0% | |
| ! | GATTTGTCAAGTTGTTGAAG+AGG | + | chr5_2:46578501-46578520 | Msa0772280:CDS | 35.0% |
| GTTGTTGAAGAGGAAGAAAA+TGG | + | chr5_2:46578511-46578530 | Msa0772280:CDS | 35.0% | |
| TTGAAGAGGAAGAAAATGGA+AGG | + | chr5_2:46578515-46578534 | Msa0772280:CDS | 35.0% | |
| ! | GCAACAATCTAAAAAGCGTA+AGG | + | chr5_2:46578571-46578590 | Msa0772280:CDS | 35.0% |
| ! | ACAATCTAAAAAGCGTAAGG+TGG | + | chr5_2:46578574-46578593 | Msa0772280:CDS | 35.0% |
| ! | ATGTTGCTTATCAAGGCTTA+AGG | + | chr5_2:46578761-46578780 | Msa0772280:three_prime_UTR | 35.0% |
| !! | TTTGGTTTGTCAAGTGAAGG+GGG | - | chr5_2:46575313-46575332 | None:intergenic | 40.0% |
| !! | GTTTGGTTTGTCAAGTGAAG+GGG | - | chr5_2:46575314-46575333 | None:intergenic | 40.0% |
| !!! | TGGTTTTATGAGGTAGCGAA+AGG | - | chr5_2:46575476-46575495 | None:intergenic | 40.0% |
| TATGATGAGTGTGAGTGTAG+GGG | - | chr5_2:46575503-46575522 | None:intergenic | 40.0% | |
| CTATGATGAGTGTGAGTGTA+GGG | - | chr5_2:46575504-46575523 | None:intergenic | 40.0% | |
| TCTATGATGAGTGTGAGTGT+AGG | - | chr5_2:46575505-46575524 | None:intergenic | 40.0% | |
| CTCACAATCCGGTTAGAAAA+AGG | + | chr5_2:46575643-46575662 | Msa0772280:CDS | 40.0% | |
| ! | ACAACGGTTTTCCTCTCAAA+TGG | + | chr5_2:46575686-46575705 | Msa0772280:CDS | 40.0% |
| !! | ATAAGAAAGTTGGTAGGGCT+TGG | + | chr5_2:46576064-46576083 | Msa0772280:CDS | 40.0% |
| !! | TATTTGTTGTATGGTCCTCC+AGG | + | chr5_2:46576096-46576115 | Msa0772280:CDS | 40.0% |
| AAACTAGATTTCCCAGTTCC+TGG | - | chr5_2:46576117-46576136 | None:intergenic | 40.0% | |
| TGCTTCTTGCTACTGCTAAT+AGG | + | chr5_2:46576223-46576242 | Msa0772280:CDS | 40.0% | |
| !! | GCAGTATTGATATTCCTGAG+AGG | + | chr5_2:46576274-46576293 | Msa0772280:CDS | 40.0% |
| ! | GTATTGATATTCCTGAGAGG+AGG | + | chr5_2:46576277-46576296 | Msa0772280:CDS | 40.0% |
| GTGTCAAGGTCTCAAACAAA+AGG | - | chr5_2:46577190-46577209 | None:intergenic | 40.0% | |
| ACACCCTGAATAGGTACATT+GGG | + | chr5_2:46577328-46577347 | Msa0772280:intron | 40.0% | |
| !! | TGCGTGGATTGATAGTGAAA+TGG | - | chr5_2:46577531-46577550 | None:intergenic | 40.0% |
| ! | ATTGAATGGTGGAAACCTCA+TGG | + | chr5_2:46577660-46577679 | Msa0772280:intron | 40.0% |
| ! | TTGAATGGTGGAAACCTCAT+GGG | + | chr5_2:46577661-46577680 | Msa0772280:intron | 40.0% |
| !! | GATGGATTATGGTCAAGTTG+TGG | + | chr5_2:46578212-46578231 | Msa0772280:CDS | 40.0% |
| !!! | ACTTTTAAGGCCAGGAAGAA+TGG | + | chr5_2:46578289-46578308 | Msa0772280:CDS | 40.0% |
| CCTTCAATCTCTCCAAAGAA+AGG | - | chr5_2:46578398-46578417 | None:intergenic | 40.0% | |
| ! | CCTTTCTTTGGAGAGATTGA+AGG | + | chr5_2:46578395-46578414 | Msa0772280:CDS | 40.0% |
| ATTGATGAAGAACGAAGACG+CGG | + | chr5_2:46578463-46578482 | Msa0772280:CDS | 40.0% | |
| ! | TCTAAAAAGCGTAAGGTGGT+TGG | + | chr5_2:46578578-46578597 | Msa0772280:CDS | 40.0% |
| GTTACTCAAAGAAGGACAAG+AGG | + | chr5_2:46578647-46578666 | Msa0772280:CDS | 40.0% | |
| AGGACAAGAGGTTATAAGAG+AGG | + | chr5_2:46578659-46578678 | Msa0772280:CDS | 40.0% | |
| AGGAATGAGTTCTTGTGCCA+TGG | - | chr5_2:46575425-46575444 | None:intergenic | 45.0% | |
| TTGTAAAGGTAGCCACGGAT+TGG | - | chr5_2:46575451-46575470 | None:intergenic | 45.0% | |
| ! | AGGTGTTGTAAAGGTAGCCA+CGG | - | chr5_2:46575456-46575475 | None:intergenic | 45.0% |
| !! | GGTAGCGAAAGGTGTTGTAA+AGG | - | chr5_2:46575465-46575484 | None:intergenic | 45.0% |
| !!! | TAGGGGAACGTGGTTTTATG+AGG | - | chr5_2:46575486-46575505 | None:intergenic | 45.0% |
| ACTCAGCTGCATCATAGACT+TGG | - | chr5_2:46575552-46575571 | None:intergenic | 45.0% | |
| ACCACTTGACTAGACCTTAG+TGG | + | chr5_2:46576882-46576901 | Msa0772280:intron | 45.0% | |
| TCCACTAAGGTCTAGTCAAG+TGG | - | chr5_2:46576886-46576905 | None:intergenic | 45.0% | |
| TGAATCAGAACCCACATGCT+AGG | - | chr5_2:46577149-46577168 | None:intergenic | 45.0% | |
| TTGAGACCTTGACACTTGAC+AGG | + | chr5_2:46577195-46577214 | Msa0772280:intron | 45.0% | |
| AGTGAACCTGTCAAGTGTCA+AGG | - | chr5_2:46577204-46577223 | None:intergenic | 45.0% | |
| CACACCCTGAATAGGTACAT+TGG | + | chr5_2:46577327-46577346 | Msa0772280:intron | 45.0% | |
| GGTCCCAATGTACCTATTCA+GGG | - | chr5_2:46577334-46577353 | None:intergenic | 45.0% | |
| TGGTCCCAATGTACCTATTC+AGG | - | chr5_2:46577335-46577354 | None:intergenic | 45.0% | |
| !! | ACACTAGCTTGCTCTTGAAG+GGG | - | chr5_2:46577914-46577933 | None:intergenic | 45.0% |
| !! | CACACTAGCTTGCTCTTGAA+GGG | - | chr5_2:46577915-46577934 | None:intergenic | 45.0% |
| !! | TCACACTAGCTTGCTCTTGA+AGG | - | chr5_2:46577916-46577935 | None:intergenic | 45.0% |
| ATGTGCATGTCCATTCTTCC+TGG | - | chr5_2:46578302-46578321 | None:intergenic | 45.0% | |
| GTTGGTTGCAAGCAAAAACG+AGG | + | chr5_2:46578596-46578615 | Msa0772280:CDS | 45.0% | |
| ! | CAGCATGATGGAAGCTGTCA+TGG | - | chr5_2:46575395-46575414 | None:intergenic | 50.0% |
| CATGGAACGAAGCAGCATGA+TGG | - | chr5_2:46575407-46575426 | None:intergenic | 50.0% | |
| ! | CATCATGCTGCTTCGTTCCA+TGG | + | chr5_2:46575405-46575424 | Msa0772280:CDS | 50.0% |
| CTCATTCCTCAACCAATCCG+TGG | + | chr5_2:46575436-46575455 | Msa0772280:CDS | 50.0% | |
| TTGTATGGTCCTCCAGGAAC+TGG | + | chr5_2:46576102-46576121 | Msa0772280:CDS | 50.0% | |
| TGTATGGTCCTCCAGGAACT+GGG | + | chr5_2:46576103-46576122 | Msa0772280:CDS | 50.0% | |
| CTAGATTTCCCAGTTCCTGG+AGG | - | chr5_2:46576114-46576133 | None:intergenic | 50.0% | |
| GATATTCCTGAGAGGAGGCA+TGG | + | chr5_2:46576282-46576301 | Msa0772280:CDS | 50.0% | |
| CCTATTCAGGGTGTGTGCTA+TGG | - | chr5_2:46577322-46577341 | None:intergenic | 50.0% | |
| CCATAGCACACACCCTGAAT+AGG | + | chr5_2:46577319-46577338 | Msa0772280:intron | 50.0% | |
| ACACGAAGGATCATCCCATG+AGG | - | chr5_2:46577678-46577697 | None:intergenic | 50.0% | |
| TGGATGCAGTTGACGCTATC+TGG | + | chr5_2:46578173-46578192 | Msa0772280:intron | 50.0% | |
| !!! | GATCCAGCACTTTTAAGGCC+AGG | + | chr5_2:46578281-46578300 | Msa0772280:CDS | 50.0% |
| !! | CTTCCTGGCCTTAAAAGTGC+TGG | - | chr5_2:46578287-46578306 | None:intergenic | 50.0% |
| AATTCCTCGGCAACTTGTGC+AGG | - | chr5_2:46578446-46578465 | None:intergenic | 50.0% | |
| GGTTGCAAGCAAAAACGAGG+TGG | + | chr5_2:46578599-46578618 | Msa0772280:CDS | 50.0% | |
| TGCAAGCAAAAACGAGGTGG+TGG | + | chr5_2:46578602-46578621 | Msa0772280:CDS | 50.0% | |
| GCAAGCAAAAACGAGGTGGT+GGG | + | chr5_2:46578603-46578622 | Msa0772280:CDS | 50.0% | |
| !! | AGGTAGCCACGGATTGGTTG+AGG | - | chr5_2:46575445-46575464 | None:intergenic | 55.0% |
| AGTGTGAGTGTAGGGGAACG+TGG | - | chr5_2:46575496-46575515 | None:intergenic | 55.0% | |
| ! | GTTGGTAGGGCTTGGAAACG+TGG | + | chr5_2:46576072-46576091 | Msa0772280:CDS | 55.0% |
| CTAGGCCTAGCCTAGCATGT+GGG | + | chr5_2:46577136-46577155 | Msa0772280:intron | 55.0% | |
| CAGAACCCACATGCTAGGCT+AGG | - | chr5_2:46577144-46577163 | None:intergenic | 55.0% | |
| AACACCTGCACAAGTTGCCG+AGG | + | chr5_2:46578439-46578458 | Msa0772280:CDS | 55.0% | |
| GATGAAGAACGAAGACGCGG+AGG | + | chr5_2:46578466-46578485 | Msa0772280:CDS | 55.0% | |
| CCTTCTCCATGCCTCCTCTC+AGG | - | chr5_2:46576291-46576310 | None:intergenic | 60.0% | |
| ! | CCTGAGAGGAGGCATGGAGA+AGG | + | chr5_2:46576288-46576307 | Msa0772280:CDS | 60.0% |
| GCTAGGCCTAGCCTAGCATG+TGG | + | chr5_2:46577135-46577154 | Msa0772280:intron | 60.0% | |
| GACGCGGAGGCGACGCTCGA+AGG | + | chr5_2:46578479-46578498 | Msa0772280:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 46575267 | 46579004 | 46575267 | ID=Msa0772280;Name=Msa0772280 |
| chr5_2 | mRNA | 46575267 | 46579004 | 46575267 | ID=Msa0772280-mRNA-1;Parent=Msa0772280;Name=Msa0772280-mRNA-1;_AED=0.17;_eAED=0.17;_QI=70|1|1|1|1|1|2|310|503 |
| chr5_2 | exon | 46575267 | 46576335 | 46575267 | ID=Msa0772280-mRNA-1:exon:13918;Parent=Msa0772280-mRNA-1 |
| chr5_2 | exon | 46578182 | 46579004 | 46578182 | ID=Msa0772280-mRNA-1:exon:13919;Parent=Msa0772280-mRNA-1 |
| chr5_2 | five_prime_UTR | 46575267 | 46575336 | 46575267 | ID=Msa0772280-mRNA-1:five_prime_utr;Parent=Msa0772280-mRNA-1 |
| chr5_2 | CDS | 46575337 | 46576335 | 46575337 | ID=Msa0772280-mRNA-1:cds;Parent=Msa0772280-mRNA-1 |
| chr5_2 | CDS | 46578182 | 46578694 | 46578182 | ID=Msa0772280-mRNA-1:cds;Parent=Msa0772280-mRNA-1 |
| chr5_2 | three_prime_UTR | 46578695 | 46579004 | 46578695 | ID=Msa0772280-mRNA-1:three_prime_utr;Parent=Msa0772280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
