AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0559450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0559450 MtrunA17_Chr4g0049401 97.115 104 3 0 5 108 86 189 1.68e-73 216
Msa0559450 MtrunA17_Chr2g0286921 77.885 104 23 0 5 108 62 165 2.89e-60 182
Msa0559450 MtrunA17_Chr2g0286931 75.000 104 26 0 5 108 31 134 4.80e-57 172
Msa0559450 MtrunA17_Chr2g0286901 71.845 103 29 0 6 108 51 153 5.50e-55 168
Msa0559450 MtrunA17_Chr8g0359081 45.455 99 49 2 10 105 114 210 3.27e-24 91.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0559450 AT4G21860.4 82.524 103 18 0 5 107 97 199 5.30e-62 187
Msa0559450 AT4G21860.1 82.524 103 18 0 5 107 97 199 5.30e-62 187
Msa0559450 AT4G21860.3 82.524 103 18 0 5 107 97 199 5.30e-62 187
Msa0559450 AT4G04830.1 75.962 104 25 0 5 108 32 135 3.62e-58 176
Msa0559450 AT4G04830.2 75.962 104 25 0 5 108 22 125 4.13e-58 175
Msa0559450 AT4G04800.1 76.923 104 24 0 5 108 71 174 2.81e-57 175
Msa0559450 AT4G04810.1 72.816 103 28 0 5 107 32 134 1.02e-54 167
Msa0559450 AT4G21850.1 70.000 100 30 0 9 108 43 142 1.20e-51 159
Msa0559450 AT4G21840.1 71.000 100 29 0 9 108 42 141 1.29e-51 159
Msa0559450 AT4G21830.2 70.000 100 30 0 9 108 40 139 1.45e-50 156
Msa0559450 AT4G21830.1 70.000 100 30 0 9 108 43 142 2.91e-50 156
Msa0559450 AT4G04840.1 68.367 98 31 0 9 106 52 149 9.34e-50 155
Msa0559450 AT4G04810.2 80.000 50 10 0 8 57 35 84 4.16e-26 94.0
Msa0559450 AT4G21860.2 75.472 53 13 0 5 57 97 149 6.83e-26 95.5
Msa0559450 AT1G53670.1 44.330 97 49 2 10 103 100 194 2.55e-22 86.7
Msa0559450 AT4G21850.2 69.388 49 15 0 9 57 43 91 5.00e-22 84.0
Msa0559450 AT1G53670.2 39.175 97 47 3 10 103 100 187 4.19e-16 70.5

Find 63 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTATAGCAGTACTGAAAT+TGG 0.198734 4_1:-58636575 Msa0559450:three_prime_UTR
GCCTTCTATGAGGGTGTTCC+TGG 0.207845 4_1:-58636938 Msa0559450:CDS
AGTATCCACCGTTGTTTAAT+AGG 0.234702 4_1:-58636331 Msa0559450:three_prime_UTR
GGAGAATATGACAAATTCTT+TGG 0.249999 4_1:-58637043 Msa0559450:CDS
TTATTTAAGCTACATAATTT+AGG 0.262832 4_1:+58636530 None:intergenic
CATTTATTTCCATCCTCTCC+TGG 0.283908 4_1:-58636490 Msa0559450:three_prime_UTR
ATTTCTATCCTCATTCCATC+TGG 0.297903 4_1:+58636778 None:intergenic
CATCTCGGTCATGTATTTAA+AGG 0.300561 4_1:-58636733 Msa0559450:CDS
TTGTCATATTCTCCTGTTCC+AGG 0.323050 4_1:+58637052 None:intergenic
GAGAATATGACAAATTCTTT+GGG 0.337073 4_1:-58637042 Msa0559450:CDS
GTATCCACCGTTGTTTAATA+GGG 0.342648 4_1:-58636330 Msa0559450:three_prime_UTR
CATTATAAATAACTAGGAAT+TGG 0.349140 4_1:+58636642 None:intergenic
TCAAACACAATTACACTCTA+TGG 0.358437 4_1:+58636400 None:intergenic
TATTGTTCCTGAGATTGTTT+TGG 0.358920 4_1:-58636440 Msa0559450:three_prime_UTR
GACACAATGGCGTTCGTTCG+TGG 0.375923 4_1:+58636693 None:intergenic
ATTTATTTCCATCCTCTCCT+GGG 0.376995 4_1:-58636489 Msa0559450:three_prime_UTR
TCTACAGTTGTGCAGGTTGC+GGG 0.382998 4_1:-58637012 Msa0559450:CDS
TCAACAACAAAATTCAATTC+CGG 0.394212 4_1:-58636974 Msa0559450:CDS
ACAAAATTCAATTCCGGTTG+TGG 0.401214 4_1:-58636968 Msa0559450:CDS
GTCTACAGTTGTGCAGGTTG+CGG 0.417871 4_1:-58637013 Msa0559450:CDS
TTTCATACCAAAACAATCTC+AGG 0.421636 4_1:+58636433 None:intergenic
GATGGAAATAAATGAACATC+TGG 0.423523 4_1:+58636499 None:intergenic
TCCAGGAACACCCTCATAGA+AGG 0.426613 4_1:+58636937 None:intergenic
ATCCTCATTCCATCTGGGTC+CGG 0.459799 4_1:+58636784 None:intergenic
GAAGGCTGGCCAGCCACAAC+CGG 0.459992 4_1:+58636955 None:intergenic
TTTCTATCCTCATTCCATCT+GGG 0.463849 4_1:+58636779 None:intergenic
AATTCAATTCCGGTTGTGGC+TGG 0.467338 4_1:-58636964 Msa0559450:CDS
TTATCAAGGTACCCTGGAAC+AGG 0.467778 4_1:-58637064 Msa0559450:CDS
ACTATAGCAGTACTGAAATT+GGG 0.471520 4_1:-58636574 Msa0559450:three_prime_UTR
AAATAACATGTGCTGCTTGT+GGG 0.473497 4_1:-58636759 Msa0559450:CDS
GAGGGAGTCTACAGTTGTGC+AGG 0.478161 4_1:-58637019 Msa0559450:CDS
AACAATCTCAGGAACAATAC+AGG 0.494058 4_1:+58636444 None:intergenic
ATAAATAACTAGGAATTGGC+TGG 0.498576 4_1:+58636646 None:intergenic
ACACAATGGCGTTCGTTCGT+GGG 0.518853 4_1:+58636694 None:intergenic
TTTGTTGTTGACTTGTAGAG+TGG 0.535127 4_1:+58636986 None:intergenic
TGGCTGGCCAGCCTTCTATG+AGG 0.541767 4_1:-58636948 Msa0559450:CDS
GGTCATGTATTTAAAGGTGA+AGG 0.544366 4_1:-58636727 Msa0559450:CDS
TATGACAAATTCTTTGGGGA+GGG 0.549093 4_1:-58637037 Msa0559450:CDS
TTTATTTCCATCCTCTCCTG+GGG 0.552821 4_1:-58636488 Msa0559450:three_prime_UTR
GGCTGGCCAGCCTTCTATGA+GGG 0.553211 4_1:-58636947 Msa0559450:CDS
ACGTGGCGGTTTATAGCTCC+AGG 0.554221 4_1:+58636920 None:intergenic
TGTCATATTCTCCTGTTCCA+GGG 0.557941 4_1:+58637053 None:intergenic
TGGCGTTCGTTCGTGGGTGT+CGG 0.560916 4_1:+58636700 None:intergenic
GGACTTCATTATAAATAACT+AGG 0.565168 4_1:+58636636 None:intergenic
GTATTATTATCAAGGTACCC+TGG 0.575400 4_1:-58637070 Msa0559450:CDS
GGAACACCCTCATAGAAGGC+TGG 0.578117 4_1:+58636941 None:intergenic
GAAATAACATGTGCTGCTTG+TGG 0.579814 4_1:-58636760 Msa0559450:CDS
AGCCGGACCCAGATGGAATG+AGG 0.581127 4_1:-58636786 Msa0559450:CDS
AATAACATGTGCTGCTTGTG+GGG 0.586603 4_1:-58636758 Msa0559450:CDS
ATATGACAAATTCTTTGGGG+AGG 0.589338 4_1:-58637038 Msa0559450:CDS
CACCACCAGCCGGACCCAGA+TGG 0.591335 4_1:-58636793 Msa0559450:intron
TATCCACCGTTGTTTAATAG+GGG 0.600305 4_1:-58636329 Msa0559450:three_prime_UTR
GTGAAATGCTATTGACACAA+TGG 0.617327 4_1:+58636680 None:intergenic
TTATTTCCATCCTCTCCTGG+GGG 0.622985 4_1:-58636487 Msa0559450:three_prime_UTR
TTATAATGAAGTCCACTCTG+TGG 0.631257 4_1:-58636627 Msa0559450:three_prime_UTR
TGGGACTGTGGCTTATAGAG+TGG 0.633677 4_1:-58636555 Msa0559450:three_prime_UTR
CAGTACTGAAATTGGGACTG+TGG 0.640736 4_1:-58636567 Msa0559450:three_prime_UTR
TCCATGCCCCTATTAAACAA+CGG 0.649561 4_1:+58636323 None:intergenic
AGAATATGACAAATTCTTTG+GGG 0.674356 4_1:-58637041 Msa0559450:CDS
ATAACATGTGCTGCTTGTGG+GGG 0.687021 4_1:-58636757 Msa0559450:CDS
CATATGATGTATCCACAGAG+TGG 0.689508 4_1:+58636615 None:intergenic
ATGCCCCTATTAAACAACGG+TGG 0.711599 4_1:+58636326 None:intergenic
GATACATCATATGATGCACA+TGG 0.773043 4_1:-58636605 Msa0559450:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTAAGCTACATAATTT+AGG + chr4_1:58636874-58636893 None:intergenic 15.0%
!! TTTATTAAAAACAGCTTAAT+AGG + chr4_1:58637028-58637047 None:intergenic 15.0%
!! TTATTTAAGCTACATAATTT+AGG + chr4_1:58636874-58636893 None:intergenic 15.0%
!! TTTATTAAAAACAGCTTAAT+AGG + chr4_1:58637028-58637047 None:intergenic 15.0%
!!! TGAAACACATAAATTTTATC+AGG + chr4_1:58636590-58636609 None:intergenic 20.0%
!! CATTATAAATAACTAGGAAT+TGG + chr4_1:58636762-58636781 None:intergenic 20.0%
!!! TGAAACACATAAATTTTATC+AGG + chr4_1:58636590-58636609 None:intergenic 20.0%
!! CATTATAAATAACTAGGAAT+TGG + chr4_1:58636762-58636781 None:intergenic 20.0%
! GAGAATATGACAAATTCTTT+GGG - chr4_1:58636359-58636378 Msa0559450:three_prime_UTR 25.0%
! AGAATATGACAAATTCTTTG+GGG - chr4_1:58636360-58636379 Msa0559450:three_prime_UTR 25.0%
! TCAACAACAAAATTCAATTC+CGG - chr4_1:58636427-58636446 Msa0559450:three_prime_UTR 25.0%
! GGACTTCATTATAAATAACT+AGG + chr4_1:58636768-58636787 None:intergenic 25.0%
! GAGAATATGACAAATTCTTT+GGG - chr4_1:58636359-58636378 Msa0559450:three_prime_UTR 25.0%
! AGAATATGACAAATTCTTTG+GGG - chr4_1:58636360-58636379 Msa0559450:three_prime_UTR 25.0%
! TCAACAACAAAATTCAATTC+CGG - chr4_1:58636427-58636446 Msa0559450:three_prime_UTR 25.0%
! GGACTTCATTATAAATAACT+AGG + chr4_1:58636768-58636787 None:intergenic 25.0%
GGAGAATATGACAAATTCTT+TGG - chr4_1:58636358-58636377 Msa0559450:three_prime_UTR 30.0%
TAAGAACAAATAAACTCACG+TGG + chr4_1:58636501-58636520 None:intergenic 30.0%
ATAAATAACTAGGAATTGGC+TGG + chr4_1:58636758-58636777 None:intergenic 30.0%
! AACTATAGCAGTACTGAAAT+TGG - chr4_1:58636826-58636845 Msa0559450:intron 30.0%
! ACTATAGCAGTACTGAAATT+GGG - chr4_1:58636827-58636846 Msa0559450:intron 30.0%
GATGGAAATAAATGAACATC+TGG + chr4_1:58636905-58636924 None:intergenic 30.0%
! TATTGTTCCTGAGATTGTTT+TGG - chr4_1:58636961-58636980 Msa0559450:CDS 30.0%
TTTCATACCAAAACAATCTC+AGG + chr4_1:58636971-58636990 None:intergenic 30.0%
TCAAACACAATTACACTCTA+TGG + chr4_1:58637004-58637023 None:intergenic 30.0%
GGAGAATATGACAAATTCTT+TGG - chr4_1:58636358-58636377 Msa0559450:three_prime_UTR 30.0%
TAAGAACAAATAAACTCACG+TGG + chr4_1:58636501-58636520 None:intergenic 30.0%
ATAAATAACTAGGAATTGGC+TGG + chr4_1:58636758-58636777 None:intergenic 30.0%
! AACTATAGCAGTACTGAAAT+TGG - chr4_1:58636826-58636845 Msa0559450:intron 30.0%
! ACTATAGCAGTACTGAAATT+GGG - chr4_1:58636827-58636846 Msa0559450:intron 30.0%
GATGGAAATAAATGAACATC+TGG + chr4_1:58636905-58636924 None:intergenic 30.0%
! TATTGTTCCTGAGATTGTTT+TGG - chr4_1:58636961-58636980 Msa0559450:CDS 30.0%
TTTCATACCAAAACAATCTC+AGG + chr4_1:58636971-58636990 None:intergenic 30.0%
TCAAACACAATTACACTCTA+TGG + chr4_1:58637004-58637023 None:intergenic 30.0%
! GTATTATTATCAAGGTACCC+TGG - chr4_1:58636331-58636350 Msa0559450:three_prime_UTR 35.0%
! ATATGACAAATTCTTTGGGG+AGG - chr4_1:58636363-58636382 Msa0559450:three_prime_UTR 35.0%
! TATGACAAATTCTTTGGGGA+GGG - chr4_1:58636364-58636383 Msa0559450:three_prime_UTR 35.0%
!! TTTGTTGTTGACTTGTAGAG+TGG + chr4_1:58636418-58636437 None:intergenic 35.0%
ACAAAATTCAATTCCGGTTG+TGG - chr4_1:58636433-58636452 Msa0559450:three_prime_UTR 35.0%
ATCCAAAGATAGTGAAGAGA+AGG + chr4_1:58636529-58636548 None:intergenic 35.0%
TTTCTATCCTCATTCCATCT+GGG + chr4_1:58636625-58636644 None:intergenic 35.0%
ATTTCTATCCTCATTCCATC+TGG + chr4_1:58636626-58636645 None:intergenic 35.0%
!! AAATAACATGTGCTGCTTGT+GGG - chr4_1:58636642-58636661 Msa0559450:exon 35.0%
CATCTCGGTCATGTATTTAA+AGG - chr4_1:58636668-58636687 Msa0559450:CDS 35.0%
GGTCATGTATTTAAAGGTGA+AGG - chr4_1:58636674-58636693 Msa0559450:CDS 35.0%
GTGAAATGCTATTGACACAA+TGG + chr4_1:58636724-58636743 None:intergenic 35.0%
TTATAATGAAGTCCACTCTG+TGG - chr4_1:58636774-58636793 Msa0559450:CDS 35.0%
GATACATCATATGATGCACA+TGG - chr4_1:58636796-58636815 Msa0559450:intron 35.0%
ATTTATTTCCATCCTCTCCT+GGG - chr4_1:58636912-58636931 Msa0559450:intron 35.0%
AACAATCTCAGGAACAATAC+AGG + chr4_1:58636960-58636979 None:intergenic 35.0%
AGTATCCACCGTTGTTTAAT+AGG - chr4_1:58637070-58637089 Msa0559450:CDS 35.0%
GTATCCACCGTTGTTTAATA+GGG - chr4_1:58637071-58637090 Msa0559450:CDS 35.0%
TATCCACCGTTGTTTAATAG+GGG - chr4_1:58637072-58637091 Msa0559450:CDS 35.0%
! GTATTATTATCAAGGTACCC+TGG - chr4_1:58636331-58636350 Msa0559450:three_prime_UTR 35.0%
! ATATGACAAATTCTTTGGGG+AGG - chr4_1:58636363-58636382 Msa0559450:three_prime_UTR 35.0%
! TATGACAAATTCTTTGGGGA+GGG - chr4_1:58636364-58636383 Msa0559450:three_prime_UTR 35.0%
!! TTTGTTGTTGACTTGTAGAG+TGG + chr4_1:58636418-58636437 None:intergenic 35.0%
ACAAAATTCAATTCCGGTTG+TGG - chr4_1:58636433-58636452 Msa0559450:three_prime_UTR 35.0%
ATCCAAAGATAGTGAAGAGA+AGG + chr4_1:58636529-58636548 None:intergenic 35.0%
TTTCTATCCTCATTCCATCT+GGG + chr4_1:58636625-58636644 None:intergenic 35.0%
ATTTCTATCCTCATTCCATC+TGG + chr4_1:58636626-58636645 None:intergenic 35.0%
!! AAATAACATGTGCTGCTTGT+GGG - chr4_1:58636642-58636661 Msa0559450:exon 35.0%
CATCTCGGTCATGTATTTAA+AGG - chr4_1:58636668-58636687 Msa0559450:CDS 35.0%
GGTCATGTATTTAAAGGTGA+AGG - chr4_1:58636674-58636693 Msa0559450:CDS 35.0%
GTGAAATGCTATTGACACAA+TGG + chr4_1:58636724-58636743 None:intergenic 35.0%
TTATAATGAAGTCCACTCTG+TGG - chr4_1:58636774-58636793 Msa0559450:CDS 35.0%
GATACATCATATGATGCACA+TGG - chr4_1:58636796-58636815 Msa0559450:intron 35.0%
ATTTATTTCCATCCTCTCCT+GGG - chr4_1:58636912-58636931 Msa0559450:intron 35.0%
AACAATCTCAGGAACAATAC+AGG + chr4_1:58636960-58636979 None:intergenic 35.0%
AGTATCCACCGTTGTTTAAT+AGG - chr4_1:58637070-58637089 Msa0559450:CDS 35.0%
GTATCCACCGTTGTTTAATA+GGG - chr4_1:58637071-58637090 Msa0559450:CDS 35.0%
TATCCACCGTTGTTTAATAG+GGG - chr4_1:58637072-58637091 Msa0559450:CDS 35.0%
TGTCATATTCTCCTGTTCCA+GGG + chr4_1:58636351-58636370 None:intergenic 40.0%
TTGTCATATTCTCCTGTTCC+AGG + chr4_1:58636352-58636371 None:intergenic 40.0%
GAACAAATAAACTCACGTGG+CGG + chr4_1:58636498-58636517 None:intergenic 40.0%
TGCCTTCTCTTCACTATCTT+TGG - chr4_1:58636524-58636543 Msa0559450:three_prime_UTR 40.0%
!! GAAATAACATGTGCTGCTTG+TGG - chr4_1:58636641-58636660 Msa0559450:exon 40.0%
!! AATAACATGTGCTGCTTGTG+GGG - chr4_1:58636643-58636662 Msa0559450:exon 40.0%
CATATGATGTATCCACAGAG+TGG + chr4_1:58636789-58636808 None:intergenic 40.0%
CATTTATTTCCATCCTCTCC+TGG - chr4_1:58636911-58636930 Msa0559450:intron 40.0%
TTTATTTCCATCCTCTCCTG+GGG - chr4_1:58636913-58636932 Msa0559450:intron 40.0%
TGTCATATTCTCCTGTTCCA+GGG + chr4_1:58636351-58636370 None:intergenic 40.0%
TTGTCATATTCTCCTGTTCC+AGG + chr4_1:58636352-58636371 None:intergenic 40.0%
GAACAAATAAACTCACGTGG+CGG + chr4_1:58636498-58636517 None:intergenic 40.0%
TGCCTTCTCTTCACTATCTT+TGG - chr4_1:58636524-58636543 Msa0559450:three_prime_UTR 40.0%
!! GAAATAACATGTGCTGCTTG+TGG - chr4_1:58636641-58636660 Msa0559450:exon 40.0%
!! AATAACATGTGCTGCTTGTG+GGG - chr4_1:58636643-58636662 Msa0559450:exon 40.0%
CATATGATGTATCCACAGAG+TGG + chr4_1:58636789-58636808 None:intergenic 40.0%
CATTTATTTCCATCCTCTCC+TGG - chr4_1:58636911-58636930 Msa0559450:intron 40.0%
TTTATTTCCATCCTCTCCTG+GGG - chr4_1:58636913-58636932 Msa0559450:intron 40.0%
! TTATCAAGGTACCCTGGAAC+AGG - chr4_1:58636337-58636356 Msa0559450:three_prime_UTR 45.0%
AATTCAATTCCGGTTGTGGC+TGG - chr4_1:58636437-58636456 Msa0559450:three_prime_UTR 45.0%
TTATGTGTTTCACCACCAGC+CGG - chr4_1:58636598-58636617 Msa0559450:three_prime_UTR 45.0%
!! ATAACATGTGCTGCTTGTGG+GGG - chr4_1:58636644-58636663 Msa0559450:exon 45.0%
! CAGTACTGAAATTGGGACTG+TGG - chr4_1:58636834-58636853 Msa0559450:intron 45.0%
TTATTTCCATCCTCTCCTGG+GGG - chr4_1:58636914-58636933 Msa0559450:intron 45.0%
! TTATCAAGGTACCCTGGAAC+AGG - chr4_1:58636337-58636356 Msa0559450:three_prime_UTR 45.0%
AATTCAATTCCGGTTGTGGC+TGG - chr4_1:58636437-58636456 Msa0559450:three_prime_UTR 45.0%
TTATGTGTTTCACCACCAGC+CGG - chr4_1:58636598-58636617 Msa0559450:three_prime_UTR 45.0%
!! ATAACATGTGCTGCTTGTGG+GGG - chr4_1:58636644-58636663 Msa0559450:exon 45.0%
! CAGTACTGAAATTGGGACTG+TGG - chr4_1:58636834-58636853 Msa0559450:intron 45.0%
TTATTTCCATCCTCTCCTGG+GGG - chr4_1:58636914-58636933 Msa0559450:intron 45.0%
GTCTACAGTTGTGCAGGTTG+CGG - chr4_1:58636388-58636407 Msa0559450:three_prime_UTR 50.0%
TCTACAGTTGTGCAGGTTGC+GGG - chr4_1:58636389-58636408 Msa0559450:three_prime_UTR 50.0%
TCCAGGAACACCCTCATAGA+AGG + chr4_1:58636467-58636486 None:intergenic 50.0%
ATCCTCATTCCATCTGGGTC+CGG + chr4_1:58636620-58636639 None:intergenic 50.0%
ACACAATGGCGTTCGTTCGT+GGG + chr4_1:58636710-58636729 None:intergenic 50.0%
TGGGACTGTGGCTTATAGAG+TGG - chr4_1:58636846-58636865 Msa0559450:intron 50.0%
GTCTACAGTTGTGCAGGTTG+CGG - chr4_1:58636388-58636407 Msa0559450:three_prime_UTR 50.0%
TCTACAGTTGTGCAGGTTGC+GGG - chr4_1:58636389-58636408 Msa0559450:three_prime_UTR 50.0%
TCCAGGAACACCCTCATAGA+AGG + chr4_1:58636467-58636486 None:intergenic 50.0%
ATCCTCATTCCATCTGGGTC+CGG + chr4_1:58636620-58636639 None:intergenic 50.0%
ACACAATGGCGTTCGTTCGT+GGG + chr4_1:58636710-58636729 None:intergenic 50.0%
TGGGACTGTGGCTTATAGAG+TGG - chr4_1:58636846-58636865 Msa0559450:intron 50.0%
GAGGGAGTCTACAGTTGTGC+AGG - chr4_1:58636382-58636401 Msa0559450:three_prime_UTR 55.0%
GGAACACCCTCATAGAAGGC+TGG + chr4_1:58636463-58636482 None:intergenic 55.0%
!! GCCTTCTATGAGGGTGTTCC+TGG - chr4_1:58636463-58636482 Msa0559450:three_prime_UTR 55.0%
ACGTGGCGGTTTATAGCTCC+AGG + chr4_1:58636484-58636503 None:intergenic 55.0%
GACACAATGGCGTTCGTTCG+TGG + chr4_1:58636711-58636730 None:intergenic 55.0%
CATAATACAGCCCCCAGGAG+AGG + chr4_1:58636927-58636946 None:intergenic 55.0%
GCGAACATAATACAGCCCCC+AGG + chr4_1:58636932-58636951 None:intergenic 55.0%
GAGGGAGTCTACAGTTGTGC+AGG - chr4_1:58636382-58636401 Msa0559450:three_prime_UTR 55.0%
GGAACACCCTCATAGAAGGC+TGG + chr4_1:58636463-58636482 None:intergenic 55.0%
!! GCCTTCTATGAGGGTGTTCC+TGG - chr4_1:58636463-58636482 Msa0559450:three_prime_UTR 55.0%
ACGTGGCGGTTTATAGCTCC+AGG + chr4_1:58636484-58636503 None:intergenic 55.0%
GACACAATGGCGTTCGTTCG+TGG + chr4_1:58636711-58636730 None:intergenic 55.0%
CATAATACAGCCCCCAGGAG+AGG + chr4_1:58636927-58636946 None:intergenic 55.0%
GCGAACATAATACAGCCCCC+AGG + chr4_1:58636932-58636951 None:intergenic 55.0%
! TGGCTGGCCAGCCTTCTATG+AGG - chr4_1:58636453-58636472 Msa0559450:three_prime_UTR 60.0%
! GGCTGGCCAGCCTTCTATGA+GGG - chr4_1:58636454-58636473 Msa0559450:three_prime_UTR 60.0%
TCATTCCATCTGGGTCCGGC+TGG + chr4_1:58636616-58636635 None:intergenic 60.0%
AGCCGGACCCAGATGGAATG+AGG - chr4_1:58636615-58636634 Msa0559450:three_prime_UTR 60.0%
GCTGCTTGTGGGGGACATCT+CGG - chr4_1:58636653-58636672 Msa0559450:exon 60.0%
TGGCGTTCGTTCGTGGGTGT+CGG + chr4_1:58636704-58636723 None:intergenic 60.0%
ATACAGCCCCCAGGAGAGGA+TGG + chr4_1:58636923-58636942 None:intergenic 60.0%
! TGGCTGGCCAGCCTTCTATG+AGG - chr4_1:58636453-58636472 Msa0559450:three_prime_UTR 60.0%
! GGCTGGCCAGCCTTCTATGA+GGG - chr4_1:58636454-58636473 Msa0559450:three_prime_UTR 60.0%
TCATTCCATCTGGGTCCGGC+TGG + chr4_1:58636616-58636635 None:intergenic 60.0%
AGCCGGACCCAGATGGAATG+AGG - chr4_1:58636615-58636634 Msa0559450:three_prime_UTR 60.0%
GCTGCTTGTGGGGGACATCT+CGG - chr4_1:58636653-58636672 Msa0559450:exon 60.0%
TGGCGTTCGTTCGTGGGTGT+CGG + chr4_1:58636704-58636723 None:intergenic 60.0%
ATACAGCCCCCAGGAGAGGA+TGG + chr4_1:58636923-58636942 None:intergenic 60.0%
! GAAGGCTGGCCAGCCACAAC+CGG + chr4_1:58636449-58636468 None:intergenic 65.0%
TTCCATCTGGGTCCGGCTGG+TGG + chr4_1:58636613-58636632 None:intergenic 65.0%
! GAAGGCTGGCCAGCCACAAC+CGG + chr4_1:58636449-58636468 None:intergenic 65.0%
TTCCATCTGGGTCCGGCTGG+TGG + chr4_1:58636613-58636632 None:intergenic 65.0%
CACCACCAGCCGGACCCAGA+TGG - chr4_1:58636608-58636627 Msa0559450:three_prime_UTR 70.0%
CACCACCAGCCGGACCCAGA+TGG - chr4_1:58636608-58636627 Msa0559450:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 58636328 58637095 58636328 ID=Msa0559450;Name=Msa0559450
chr4_1 mRNA 58636328 58637095 58636328 ID=Msa0559450-mRNA-1;Parent=Msa0559450;Name=Msa0559450-mRNA-1;_AED=0.38;_eAED=0.39;_QI=0|1|0.5|1|1|1|2|326|108
chr4_1 exon 58636328 58636806 58636328 ID=Msa0559450-mRNA-1:exon:17945;Parent=Msa0559450-mRNA-1
chr4_1 exon 58636922 58637095 58636922 ID=Msa0559450-mRNA-1:exon:17944;Parent=Msa0559450-mRNA-1
chr4_1 CDS 58636922 58637095 58636922 ID=Msa0559450-mRNA-1:cds;Parent=Msa0559450-mRNA-1
chr4_1 CDS 58636654 58636806 58636654 ID=Msa0559450-mRNA-1:cds;Parent=Msa0559450-mRNA-1
chr4_1 three_prime_UTR 58636328 58636653 58636328 ID=Msa0559450-mRNA-1:three_prime_utr;Parent=Msa0559450-mRNA-1
Gene Sequence

>Msa0559450

TTGGTATTATTATCAAGGTACCCTGGAACAGGAGAATATGACAAATTCTTTGGGGAGGGAGTCTACAGTTGTGCAGGTTGCGGGACTCCACTCTACAAGTCAACAACAAAATTCAATTCCGGTTGTGGCTGGCCAGCCTTCTATGAGGGTGTTCCTGGAGCTATAAACCGCCACCCGGACCCAGATGGAATGAGGATAGAAATAACATGTGCTGCTTGTGGGGGACATCTCGGTCATGTATTTAAAGGTGAAGGATTTCCGACACCCACGAACGAACGCCATTGTGTCAATAGCATTTCACTAAAATTTGCGCCAGCCAATTCCTAG

Protein sequence

>Msa0559450

LVLLSRYPGTGEYDKFFGEGVYSCAGCGTPLYKSTTKFNSGCGWPAFYEGVPGAINRHPDPDGMRIEITCAACGGHLGHVFKGEGFPTPTNERHCVNSISLKFAPANS*