Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330540 | sp|Q9XFS9|DXR_ARATH | 91.379 | 290 | 25 | 0 | 1 | 290 | 188 | 477 | 0.0 | 556 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330540 | G7JNV7 | 100.000 | 290 | 0 | 0 | 1 | 290 | 186 | 475 | 0.0 | 600 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001550 | Msa1330540 | 0.818172 | 2.251484e-52 | -8.615850e-47 |
| Msa0002110 | Msa1330540 | 0.802982 | 4.332365e-49 | -8.615850e-47 |
| Msa0046110 | Msa1330540 | 0.804547 | 2.049637e-49 | -8.615850e-47 |
| Msa0054920 | Msa1330540 | -0.800671 | 1.292159e-48 | -8.615850e-47 |
| Msa0067590 | Msa1330540 | 0.807342 | 5.296835e-50 | -8.615850e-47 |
| Msa0081610 | Msa1330540 | 0.820191 | 7.813811e-53 | -8.615850e-47 |
| Msa0092480 | Msa1330540 | 0.803569 | 3.274978e-49 | -8.615850e-47 |
| Msa0100290 | Msa1330540 | -0.818081 | 2.360405e-52 | -8.615850e-47 |
| Msa0111110 | Msa1330540 | 0.805319 | 1.413479e-49 | -8.615850e-47 |
| Msa0638010 | Msa1330540 | 0.852961 | 3.273552e-61 | -8.615850e-47 |
| Msa0686950 | Msa1330540 | 0.802505 | 5.435672e-49 | -8.615850e-47 |
| Msa0775170 | Msa1330540 | 0.805872 | 1.082097e-49 | -8.615850e-47 |
| Msa0120880 | Msa1330540 | -0.810853 | 9.374818e-51 | -8.615850e-47 |
| Msa0131270 | Msa1330540 | -0.809692 | 1.668741e-50 | -8.615850e-47 |
| Msa0138990 | Msa1330540 | 0.814341 | 1.618655e-51 | -8.615850e-47 |
| Msa0140770 | Msa1330540 | 0.866469 | 2.788135e-65 | -8.615850e-47 |
| Msa0168770 | Msa1330540 | 0.808200 | 3.481239e-50 | -8.615850e-47 |
| Msa0173950 | Msa1330540 | 0.810333 | 1.214191e-50 | -8.615850e-47 |
| Msa0187590 | Msa1330540 | 0.823511 | 1.331684e-53 | -8.615850e-47 |
| Msa0220400 | Msa1330540 | 0.820370 | 7.110028e-53 | -8.615850e-47 |
| Msa1258030 | Msa1330540 | 0.834708 | 2.564262e-56 | -8.615850e-47 |
| Msa1285360 | Msa1330540 | 0.802775 | 4.779617e-49 | -8.615850e-47 |
| Msa1330540 | Msa1342960 | 0.821192 | 4.600225e-53 | -8.615850e-47 |
| Msa1330540 | Msa1359400 | -0.813983 | 1.941785e-51 | -8.615850e-47 |
| Msa1330540 | Msa1361670 | 0.831805 | 1.355770e-55 | -8.615850e-47 |
| Msa1330540 | Msa1363820 | 0.803447 | 3.471654e-49 | -8.615850e-47 |
| Msa1330540 | Msa1364350 | 0.825806 | 3.834963e-54 | -8.615850e-47 |
| Msa1330540 | Msa1375610 | 0.809241 | 2.085123e-50 | -8.615850e-47 |
| Msa1330540 | Msa1375970 | 0.834093 | 3.658013e-56 | -8.615850e-47 |
| Msa1330540 | Msa1376550 | 0.820822 | 5.598014e-53 | -8.615850e-47 |
| Msa1330540 | Msa1382380 | 0.823796 | 1.142266e-53 | -8.615850e-47 |
| Msa1330540 | Msa1385720 | -0.802462 | 5.547266e-49 | -8.615850e-47 |
| Msa1330540 | Msa1411930 | 0.809327 | 1.998791e-50 | -8.615850e-47 |
| Msa1330540 | Msa1431510 | 0.824682 | 7.070139e-54 | -8.615850e-47 |
| Msa1330540 | Msa1464090 | -0.803160 | 3.979402e-49 | -8.615850e-47 |
| Msa0370580 | Msa1330540 | 0.800765 | 1.235948e-48 | -8.615850e-47 |
| Msa0374340 | Msa1330540 | 0.806497 | 7.993347e-50 | -8.615850e-47 |
| Msa0380400 | Msa1330540 | 0.818448 | 1.949914e-52 | -8.615850e-47 |
| Msa0385930 | Msa1330540 | 0.831026 | 2.107385e-55 | -8.615850e-47 |
| Msa0403480 | Msa1330540 | 0.946649 | 3.081230e-105 | -8.615850e-47 |
| Msa0415160 | Msa1330540 | 0.817593 | 3.043019e-52 | -8.615850e-47 |
| Msa0476170 | Msa1330540 | 0.820539 | 6.503502e-53 | -8.615850e-47 |
| Msa0479760 | Msa1330540 | 0.866950 | 1.959892e-65 | -8.615850e-47 |
| Msa0982090 | Msa1330540 | 0.823928 | 1.063575e-53 | -8.615850e-47 |
| Msa1039190 | Msa1330540 | 0.846669 | 1.878803e-59 | -8.615850e-47 |
| Msa1063590 | Msa1330540 | 0.834258 | 3.325763e-56 | -8.615850e-47 |
| Msa1085610 | Msa1330540 | 0.881095 | 3.191245e-70 | -8.615850e-47 |
| Msa1087520 | Msa1330540 | 0.820778 | 5.730207e-53 | -8.615850e-47 |
| Msa0260580 | Msa1330540 | 0.804342 | 2.261879e-49 | -8.615850e-47 |
| Msa0327990 | Msa1330540 | 0.821795 | 3.339534e-53 | -8.615850e-47 |
| Msa0334450 | Msa1330540 | 0.801328 | 9.482365e-49 | -8.615850e-47 |
| Msa0337710 | Msa1330540 | -0.817313 | 3.517640e-52 | -8.615850e-47 |
| Msa0343500 | Msa1330540 | -0.808953 | 2.403854e-50 | -8.615850e-47 |
| Msa1128610 | Msa1330540 | 0.832529 | 8.975793e-56 | -8.615850e-47 |
| Msa1129300 | Msa1330540 | 0.840125 | 1.049950e-57 | -8.615850e-47 |
| Msa1143810 | Msa1330540 | 0.823486 | 1.349871e-53 | -8.615850e-47 |
| Msa1169910 | Msa1330540 | -0.802600 | 5.194183e-49 | -8.615850e-47 |
| Msa1190100 | Msa1330540 | 0.837109 | 6.308431e-57 | -8.615850e-47 |
| Msa1209870 | Msa1330540 | 0.949122 | 2.408593e-107 | -8.615850e-47 |
| Msa0512950 | Msa1330540 | 0.801817 | 7.528750e-49 | -8.615850e-47 |
| Msa0523430 | Msa1330540 | 0.862627 | 4.431748e-64 | -8.615850e-47 |
| Msa0523490 | Msa1330540 | 0.845718 | 3.410347e-59 | -8.615850e-47 |
| Msa0559450 | Msa1330540 | 0.855576 | 5.752287e-62 | -8.615850e-47 |
| Msa0572550 | Msa1330540 | 0.829088 | 6.259770e-55 | -8.615850e-47 |
| Msa0576020 | Msa1330540 | 0.852171 | 5.498252e-61 | -8.615850e-47 |
| Msa0576080 | Msa1330540 | 0.873367 | 1.553915e-67 | -8.615850e-47 |
| Msa0576090 | Msa1330540 | 0.819412 | 1.177663e-52 | -8.615850e-47 |
| Msa0576120 | Msa1330540 | 0.881891 | 1.646555e-70 | -8.615850e-47 |
| Msa0588110 | Msa1330540 | 0.805575 | 1.249352e-49 | -8.615850e-47 |
| Msa0881530 | Msa1330540 | 0.818029 | 2.426257e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330540 | MtrunA17_Chr4g0059081 | 100.000 | 290 | 0 | 0 | 1 | 290 | 186 | 475 | 0.0 | 600 |
| Msa1330540 | MtrunA17_Chr8g0339281 | 79.930 | 284 | 57 | 0 | 1 | 284 | 186 | 469 | 6.18e-175 | 491 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330540 | AT5G62790.2 | 91.379 | 290 | 25 | 0 | 1 | 290 | 208 | 497 | 0.0 | 556 |
| Msa1330540 | AT5G62790.1 | 91.379 | 290 | 25 | 0 | 1 | 290 | 188 | 477 | 0.0 | 556 |
Find 59 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAAGCACATTACTTATT+TGG | 0.150895 | 8_4:+49726123 | Msa1330540:CDS |
| TGTTTCCAGGATTAGCTATT+TGG | 0.208608 | 8_4:+49727299 | Msa1330540:intron |
| GGCAATTAGTGTCTCTTTAT+TGG | 0.216981 | 8_4:-49725276 | None:intergenic |
| AAAACATCCCAACTGGAGTA+TGG | 0.276203 | 8_4:+49725966 | Msa1330540:CDS |
| TTCATCTGTTCTTGCACAAT+TGG | 0.303753 | 8_4:+49726317 | Msa1330540:CDS |
| TCATCTGTTCTTGCACAATT+GGG | 0.311960 | 8_4:+49726318 | Msa1330540:CDS |
| GCCTATGCTGCTGGCCGCGC+TGG | 0.330237 | 8_4:+49726630 | Msa1330540:CDS |
| AGGATTGGCAAACGCATATC+AGG | 0.374634 | 8_4:-49726345 | None:intergenic |
| GCAAACTAGCAGCATATTCT+CGG | 0.421203 | 8_4:-49727419 | None:intergenic |
| ACATCTTTCAGTTTCTCAAC+AGG | 0.421238 | 8_4:-49725925 | None:intergenic |
| CAGGCCATGATAATGTATAA+AGG | 0.421244 | 8_4:-49726365 | None:intergenic |
| GATGGATACTTAATGTTGTC+AGG | 0.430692 | 8_4:-49726597 | None:intergenic |
| CAATCCTTTATACATTATCA+TGG | 0.441678 | 8_4:+49726361 | Msa1330540:CDS |
| TCCAGCGCGGCCAGCAGCAT+AGG | 0.445154 | 8_4:-49726631 | None:intergenic |
| GATCAGTCTCATGCTAGAAC+AGG | 0.456977 | 8_4:-49727462 | None:intergenic |
| CGCGCTGGAGGAACCATGAC+AGG | 0.460029 | 8_4:+49726645 | Msa1330540:CDS |
| ACAGTTGCGGCCATAGAAGC+TGG | 0.466883 | 8_4:+49725236 | Msa1330540:CDS |
| TATGCTGCTGGCCGCGCTGG+AGG | 0.470238 | 8_4:+49726633 | Msa1330540:CDS |
| ATGCATTAAAACATCCCAAC+TGG | 0.473839 | 8_4:+49725959 | Msa1330540:CDS |
| AAACATCCCAACTGGAGTAT+GGG | 0.476050 | 8_4:+49725967 | Msa1330540:CDS |
| CATGATAATGTATAAAGGAT+TGG | 0.483281 | 8_4:-49726360 | None:intergenic |
| ATGAATCTTGCCTATGCTGC+TGG | 0.484349 | 8_4:+49726621 | Msa1330540:CDS |
| GCTTCTATGGCCGCAACTGT+TGG | 0.486636 | 8_4:-49725233 | None:intergenic |
| CATCTGTTCTTGCACAATTG+GGG | 0.489816 | 8_4:+49726319 | Msa1330540:CDS |
| AGCAGCATAGGCAAGATTCA+TGG | 0.491274 | 8_4:-49726619 | None:intergenic |
| AGCTGGAAAAGACATAGCTT+TGG | 0.491660 | 8_4:+49725253 | Msa1330540:CDS |
| CGAGTCATTCTAACTGCATC+CGG | 0.492265 | 8_4:+49725597 | Msa1330540:CDS |
| AATTATTCACTATGACTTGT+GGG | 0.496488 | 8_4:+49727395 | Msa1330540:CDS |
| CGGGCAAGAGGAAGGACAAA+AGG | 0.499562 | 8_4:-49725305 | None:intergenic |
| AGGAAGGACAAAAGGACCTC+CGG | 0.506111 | 8_4:-49725297 | None:intergenic |
| TCAGAACAATAGACTCTGTC+AGG | 0.507170 | 8_4:-49726384 | None:intergenic |
| AATAAAGAGACACTAATTGC+CGG | 0.508829 | 8_4:+49725278 | Msa1330540:CDS |
| TACATACCTAAAAGCACCTC+CGG | 0.511346 | 8_4:-49725616 | None:intergenic |
| AAATTATTCACTATGACTTG+TGG | 0.522725 | 8_4:+49727394 | Msa1330540:CDS |
| ATTGAATGTATGATTGATTG+TGG | 0.526824 | 8_4:-49726180 | None:intergenic |
| ACATTCAATGATTGAAACAC+AGG | 0.537807 | 8_4:+49726194 | Msa1330540:CDS |
| CTGTTCTTGCACAATTGGGG+TGG | 0.541920 | 8_4:+49726322 | Msa1330540:CDS |
| GTGCACCCTCTGTTAACCCC+TGG | 0.548422 | 8_4:-49725569 | None:intergenic |
| CAAACTAGCAGCATATTCTC+GGG | 0.558988 | 8_4:-49727418 | None:intergenic |
| CATAGTGAATAATTTCCTCA+AGG | 0.564756 | 8_4:-49727386 | None:intergenic |
| AACATCCCAACTGGAGTATG+GGG | 0.571896 | 8_4:+49725968 | Msa1330540:CDS |
| TATGCTTTCGGGCAAGAGGA+AGG | 0.576821 | 8_4:-49725313 | None:intergenic |
| GCAGAATGTTCGGAATCAGC+AGG | 0.577993 | 8_4:-49725350 | None:intergenic |
| TGCACTAAGAACACCTGTCA+TGG | 0.586245 | 8_4:-49726658 | None:intergenic |
| TCTATTGTTCTGAAGTCACT+TGG | 0.588552 | 8_4:+49726394 | Msa1330540:CDS |
| ATAGTGAATAATTTCCTCAA+GGG | 0.592245 | 8_4:-49727385 | None:intergenic |
| GTTGACCTCACCTTCCCTTG+AGG | 0.594034 | 8_4:+49727371 | Msa1330540:CDS |
| ACGTTATGCTTTCGGGCAAG+AGG | 0.594225 | 8_4:-49725317 | None:intergenic |
| TGAATAATTTCCTCAAGGGA+AGG | 0.623968 | 8_4:-49727381 | None:intergenic |
| AATTTCCTCAAGGGAAGGTG+AGG | 0.628083 | 8_4:-49727376 | None:intergenic |
| GCATAGGCAAGATTCATGGA+TGG | 0.630920 | 8_4:-49726615 | None:intergenic |
| GGTTAACAGAGGGTGCACTT+AGG | 0.633566 | 8_4:+49725574 | Msa1330540:CDS |
| TTTCGCTTCAGTGTATCCAG+GGG | 0.636450 | 8_4:+49725553 | Msa1330540:intron |
| TGTATCCAGGGGTTAACAGA+GGG | 0.641373 | 8_4:+49725564 | Msa1330540:CDS |
| GTCATTCTAACTGCATCCGG+AGG | 0.671792 | 8_4:+49725600 | Msa1330540:CDS |
| GTGTATCCAGGGGTTAACAG+AGG | 0.688037 | 8_4:+49725563 | Msa1330540:intron |
| CTGTCATGGTTCCTCCAGCG+CGG | 0.688289 | 8_4:-49726644 | None:intergenic |
| AAAGAGACACTAATTGCCGG+AGG | 0.715097 | 8_4:+49725281 | Msa1330540:CDS |
| TACTTGCAAAGATCAAGACG+AGG | 0.743866 | 8_4:-49726417 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTAAAATAATAAAAAAGAT+TGG | + | chr8_4:49726966-49726985 | Msa1330540:intron | 10.0% |
| !! | GTTAAAATAATAAAAAAGAT+TGG | + | chr8_4:49726966-49726985 | Msa1330540:intron | 10.0% |
| !! | ATTTAATGATTATCAAAAGA+CGG | - | chr8_4:49726250-49726269 | None:intergenic | 15.0% |
| !!! | TTAATTATTTTTTCCTTTCT+AGG | + | chr8_4:49726293-49726312 | Msa1330540:intron | 15.0% |
| !!! | TAATAAAAAAGATTGGTTAT+TGG | + | chr8_4:49726973-49726992 | Msa1330540:intron | 15.0% |
| !! | ATTTAATGATTATCAAAAGA+CGG | - | chr8_4:49726250-49726269 | None:intergenic | 15.0% |
| !!! | TTAATTATTTTTTCCTTTCT+AGG | + | chr8_4:49726293-49726312 | Msa1330540:intron | 15.0% |
| !!! | TAATAAAAAAGATTGGTTAT+TGG | + | chr8_4:49726973-49726992 | Msa1330540:intron | 15.0% |
| !! | ATATTTCACATATTATACTC+TGG | + | chr8_4:49725457-49725476 | Msa1330540:intron | 20.0% |
| !! | TTCTATTAATAAATGAAGCA+GGG | - | chr8_4:49725525-49725544 | None:intergenic | 20.0% |
| !! | TTTCTATTAATAAATGAAGC+AGG | - | chr8_4:49725526-49725545 | None:intergenic | 20.0% |
| !!! | TTATCTTTTCTGAAATGAAA+AGG | + | chr8_4:49725708-49725727 | Msa1330540:intron | 20.0% |
| !! | AACAAATTTACTATATACTC+GGG | - | chr8_4:49726076-49726095 | None:intergenic | 20.0% |
| !! | GAACAAATTTACTATATACT+CGG | - | chr8_4:49726077-49726096 | None:intergenic | 20.0% |
| !!! | ATTTGTTCTACTTATTTTGT+AGG | + | chr8_4:49726089-49726108 | Msa1330540:intron | 20.0% |
| !!! | TTTGTTCTACTTATTTTGTA+GGG | + | chr8_4:49726090-49726109 | Msa1330540:intron | 20.0% |
| !! | AATATTCATCACAATTCTTA+GGG | - | chr8_4:49726766-49726785 | None:intergenic | 20.0% |
| !! | TTAAAAACTTTGTATTTGCA+TGG | - | chr8_4:49726871-49726890 | None:intergenic | 20.0% |
| !!! | TATTTTAACTATCAGTATGA+AGG | - | chr8_4:49726955-49726974 | None:intergenic | 20.0% |
| !!! | ATATTTATTAGCATTTGTTG+TGG | + | chr8_4:49727041-49727060 | Msa1330540:intron | 20.0% |
| !! | TGGTAAAAATCAAAGTAATA+TGG | - | chr8_4:49727089-49727108 | None:intergenic | 20.0% |
| !! | TCATTAAATCCACATTTAAT+TGG | + | chr8_4:49727267-49727286 | Msa1330540:intron | 20.0% |
| !! | ATATTTCACATATTATACTC+TGG | + | chr8_4:49725457-49725476 | Msa1330540:intron | 20.0% |
| !! | TTCTATTAATAAATGAAGCA+GGG | - | chr8_4:49725525-49725544 | None:intergenic | 20.0% |
| !! | TTTCTATTAATAAATGAAGC+AGG | - | chr8_4:49725526-49725545 | None:intergenic | 20.0% |
| !!! | TTATCTTTTCTGAAATGAAA+AGG | + | chr8_4:49725708-49725727 | Msa1330540:intron | 20.0% |
| !! | AACAAATTTACTATATACTC+GGG | - | chr8_4:49726076-49726095 | None:intergenic | 20.0% |
| !! | GAACAAATTTACTATATACT+CGG | - | chr8_4:49726077-49726096 | None:intergenic | 20.0% |
| !!! | ATTTGTTCTACTTATTTTGT+AGG | + | chr8_4:49726089-49726108 | Msa1330540:intron | 20.0% |
| !!! | TTTGTTCTACTTATTTTGTA+GGG | + | chr8_4:49726090-49726109 | Msa1330540:intron | 20.0% |
| !! | AATATTCATCACAATTCTTA+GGG | - | chr8_4:49726766-49726785 | None:intergenic | 20.0% |
| !! | TTAAAAACTTTGTATTTGCA+TGG | - | chr8_4:49726871-49726890 | None:intergenic | 20.0% |
| !!! | TATTTTAACTATCAGTATGA+AGG | - | chr8_4:49726955-49726974 | None:intergenic | 20.0% |
| !!! | ATATTTATTAGCATTTGTTG+TGG | + | chr8_4:49727041-49727060 | Msa1330540:intron | 20.0% |
| !! | TGGTAAAAATCAAAGTAATA+TGG | - | chr8_4:49727089-49727108 | None:intergenic | 20.0% |
| !! | TCATTAAATCCACATTTAAT+TGG | + | chr8_4:49727267-49727286 | Msa1330540:intron | 20.0% |
| !!! | TATTTTTACGTTATGCTTTC+GGG | - | chr8_4:49725327-49725346 | None:intergenic | 25.0% |
| !!! | GTATTTTTACGTTATGCTTT+CGG | - | chr8_4:49725328-49725347 | None:intergenic | 25.0% |
| ! | TCTATTAATAAATGAAGCAG+GGG | - | chr8_4:49725524-49725543 | None:intergenic | 25.0% |
| ! | TCCATCATGATATGAAAAAT+TGG | - | chr8_4:49725795-49725814 | None:intergenic | 25.0% |
| ! | TCTACAACAAAACTAAGAAA+GGG | - | chr8_4:49725848-49725867 | None:intergenic | 25.0% |
| ! | ATTGAAGCACATTACTTATT+TGG | + | chr8_4:49726123-49726142 | Msa1330540:CDS | 25.0% |
| ! | ATTGAATGTATGATTGATTG+TGG | - | chr8_4:49726183-49726202 | None:intergenic | 25.0% |
| !! | CATGATAATGTATAAAGGAT+TGG | - | chr8_4:49726363-49726382 | None:intergenic | 25.0% |
| ! | CAATCCTTTATACATTATCA+TGG | + | chr8_4:49726361-49726380 | Msa1330540:CDS | 25.0% |
| !! | ATTTTCTTCAGTATGAACTA+TGG | - | chr8_4:49726469-49726488 | None:intergenic | 25.0% |
| ! | CAATATTCATCACAATTCTT+AGG | - | chr8_4:49726767-49726786 | None:intergenic | 25.0% |
| !!! | GGAAGTAAAACTTATTTTGA+AGG | - | chr8_4:49726823-49726842 | None:intergenic | 25.0% |
| ! | ATGCAAGTTATATATATAGG+AGG | - | chr8_4:49727003-49727022 | None:intergenic | 25.0% |
| ! | CAGATGCAAGTTATATATAT+AGG | - | chr8_4:49727006-49727025 | None:intergenic | 25.0% |
| ! | GCAAAATAACCAATTAAATG+TGG | - | chr8_4:49727279-49727298 | None:intergenic | 25.0% |
| !! | TAGCTATTTGGATATTTTCA+AGG | + | chr8_4:49727311-49727330 | Msa1330540:CDS | 25.0% |
| ! | ATAGTGAATAATTTCCTCAA+GGG | - | chr8_4:49727388-49727407 | None:intergenic | 25.0% |
| ! | AAATTATTCACTATGACTTG+TGG | + | chr8_4:49727394-49727413 | Msa1330540:CDS | 25.0% |
| !! | AATTATTCACTATGACTTGT+GGG | + | chr8_4:49727395-49727414 | Msa1330540:CDS | 25.0% |
| !!! | TATTTTTACGTTATGCTTTC+GGG | - | chr8_4:49725327-49725346 | None:intergenic | 25.0% |
| !!! | GTATTTTTACGTTATGCTTT+CGG | - | chr8_4:49725328-49725347 | None:intergenic | 25.0% |
| ! | TCTATTAATAAATGAAGCAG+GGG | - | chr8_4:49725524-49725543 | None:intergenic | 25.0% |
| ! | TCCATCATGATATGAAAAAT+TGG | - | chr8_4:49725795-49725814 | None:intergenic | 25.0% |
| ! | TCTACAACAAAACTAAGAAA+GGG | - | chr8_4:49725848-49725867 | None:intergenic | 25.0% |
| ! | ATTGAAGCACATTACTTATT+TGG | + | chr8_4:49726123-49726142 | Msa1330540:CDS | 25.0% |
| ! | ATTGAATGTATGATTGATTG+TGG | - | chr8_4:49726183-49726202 | None:intergenic | 25.0% |
| !! | CATGATAATGTATAAAGGAT+TGG | - | chr8_4:49726363-49726382 | None:intergenic | 25.0% |
| ! | CAATCCTTTATACATTATCA+TGG | + | chr8_4:49726361-49726380 | Msa1330540:CDS | 25.0% |
| !! | ATTTTCTTCAGTATGAACTA+TGG | - | chr8_4:49726469-49726488 | None:intergenic | 25.0% |
| ! | CAATATTCATCACAATTCTT+AGG | - | chr8_4:49726767-49726786 | None:intergenic | 25.0% |
| !!! | GGAAGTAAAACTTATTTTGA+AGG | - | chr8_4:49726823-49726842 | None:intergenic | 25.0% |
| ! | ATGCAAGTTATATATATAGG+AGG | - | chr8_4:49727003-49727022 | None:intergenic | 25.0% |
| ! | CAGATGCAAGTTATATATAT+AGG | - | chr8_4:49727006-49727025 | None:intergenic | 25.0% |
| ! | GCAAAATAACCAATTAAATG+TGG | - | chr8_4:49727279-49727298 | None:intergenic | 25.0% |
| !! | TAGCTATTTGGATATTTTCA+AGG | + | chr8_4:49727311-49727330 | Msa1330540:CDS | 25.0% |
| ! | ATAGTGAATAATTTCCTCAA+GGG | - | chr8_4:49727388-49727407 | None:intergenic | 25.0% |
| ! | AAATTATTCACTATGACTTG+TGG | + | chr8_4:49727394-49727413 | Msa1330540:CDS | 25.0% |
| !! | AATTATTCACTATGACTTGT+GGG | + | chr8_4:49727395-49727414 | Msa1330540:CDS | 25.0% |
| AATAAAGAGACACTAATTGC+CGG | + | chr8_4:49725278-49725297 | Msa1330540:CDS | 30.0% | |
| CTGAAAAATAGCAGAATGTT+CGG | - | chr8_4:49725363-49725382 | None:intergenic | 30.0% | |
| GTATGTAAAATAAACCTGAG+TGG | + | chr8_4:49725632-49725651 | Msa1330540:intron | 30.0% | |
| AAAAAGAAGCAACTGAACAT+GGG | - | chr8_4:49725675-49725694 | None:intergenic | 30.0% | |
| TAAAAAGAAGCAACTGAACA+TGG | - | chr8_4:49725676-49725695 | None:intergenic | 30.0% | |
| ! | TCAGTTGCTTCTTTTTATGT+TGG | + | chr8_4:49725679-49725698 | Msa1330540:intron | 30.0% |
| TGAAATGAAAAGGAACCAAA+AGG | + | chr8_4:49725718-49725737 | Msa1330540:intron | 30.0% | |
| GAAATGAAAAGGAACCAAAA+GGG | + | chr8_4:49725719-49725738 | Msa1330540:intron | 30.0% | |
| ! | GCCAATTTTTCATATCATGA+TGG | + | chr8_4:49725791-49725810 | Msa1330540:intron | 30.0% |
| AACTAAGAAAGGGAAATTCA+AGG | - | chr8_4:49725838-49725857 | None:intergenic | 30.0% | |
| GTCTACAACAAAACTAAGAA+AGG | - | chr8_4:49725849-49725868 | None:intergenic | 30.0% | |
| ACAGTCATGTAGATCATATA+GGG | - | chr8_4:49725871-49725890 | None:intergenic | 30.0% | |
| TACAGTCATGTAGATCATAT+AGG | - | chr8_4:49725872-49725891 | None:intergenic | 30.0% | |
| TGTTTCGCTTCATGATTAAT+AGG | + | chr8_4:49725896-49725915 | Msa1330540:intron | 30.0% | |
| GTTTCGCTTCATGATTAATA+GGG | + | chr8_4:49725897-49725916 | Msa1330540:intron | 30.0% | |
| ACATTCAATGATTGAAACAC+AGG | + | chr8_4:49726194-49726213 | Msa1330540:CDS | 30.0% | |
| AACTATGGAAACGAAATTAG+GGG | - | chr8_4:49726454-49726473 | None:intergenic | 30.0% | |
| GAACTATGGAAACGAAATTA+GGG | - | chr8_4:49726455-49726474 | None:intergenic | 30.0% | |
| TGAACTATGGAAACGAAATT+AGG | - | chr8_4:49726456-49726475 | None:intergenic | 30.0% | |
| GCATATTCACATTTCAAACA+TGG | - | chr8_4:49726550-49726569 | None:intergenic | 30.0% | |
| ! | TGTTTGAAATGTGAATATGC+AGG | + | chr8_4:49726550-49726569 | Msa1330540:intron | 30.0% |
| ATAATTATCGAGGTTATGGT+GGG | - | chr8_4:49726848-49726867 | None:intergenic | 30.0% | |
| ATGGATAATTATCGAGGTTA+TGG | - | chr8_4:49726852-49726871 | None:intergenic | 30.0% | |
| ATTTGCATGGATAATTATCG+AGG | - | chr8_4:49726858-49726877 | None:intergenic | 30.0% | |
| ! | TGAAAATGAGTCGGTATTTT+GGG | - | chr8_4:49726896-49726915 | None:intergenic | 30.0% |
| AATATCCAAATAGCTAATCC+TGG | - | chr8_4:49727307-49727326 | None:intergenic | 30.0% | |
| !! | TTTGGATATTTTCAAGGTTG+TGG | + | chr8_4:49727317-49727336 | Msa1330540:CDS | 30.0% |
| CATAGTGAATAATTTCCTCA+AGG | - | chr8_4:49727389-49727408 | None:intergenic | 30.0% | |
| AATAAAGAGACACTAATTGC+CGG | + | chr8_4:49725278-49725297 | Msa1330540:CDS | 30.0% | |
| CTGAAAAATAGCAGAATGTT+CGG | - | chr8_4:49725363-49725382 | None:intergenic | 30.0% | |
| GTATGTAAAATAAACCTGAG+TGG | + | chr8_4:49725632-49725651 | Msa1330540:intron | 30.0% | |
| AAAAAGAAGCAACTGAACAT+GGG | - | chr8_4:49725675-49725694 | None:intergenic | 30.0% | |
| TAAAAAGAAGCAACTGAACA+TGG | - | chr8_4:49725676-49725695 | None:intergenic | 30.0% | |
| ! | TCAGTTGCTTCTTTTTATGT+TGG | + | chr8_4:49725679-49725698 | Msa1330540:intron | 30.0% |
| TGAAATGAAAAGGAACCAAA+AGG | + | chr8_4:49725718-49725737 | Msa1330540:intron | 30.0% | |
| GAAATGAAAAGGAACCAAAA+GGG | + | chr8_4:49725719-49725738 | Msa1330540:intron | 30.0% | |
| ! | GCCAATTTTTCATATCATGA+TGG | + | chr8_4:49725791-49725810 | Msa1330540:intron | 30.0% |
| AACTAAGAAAGGGAAATTCA+AGG | - | chr8_4:49725838-49725857 | None:intergenic | 30.0% | |
| GTCTACAACAAAACTAAGAA+AGG | - | chr8_4:49725849-49725868 | None:intergenic | 30.0% | |
| ACAGTCATGTAGATCATATA+GGG | - | chr8_4:49725871-49725890 | None:intergenic | 30.0% | |
| TACAGTCATGTAGATCATAT+AGG | - | chr8_4:49725872-49725891 | None:intergenic | 30.0% | |
| TGTTTCGCTTCATGATTAAT+AGG | + | chr8_4:49725896-49725915 | Msa1330540:intron | 30.0% | |
| GTTTCGCTTCATGATTAATA+GGG | + | chr8_4:49725897-49725916 | Msa1330540:intron | 30.0% | |
| ACATTCAATGATTGAAACAC+AGG | + | chr8_4:49726194-49726213 | Msa1330540:CDS | 30.0% | |
| AACTATGGAAACGAAATTAG+GGG | - | chr8_4:49726454-49726473 | None:intergenic | 30.0% | |
| GAACTATGGAAACGAAATTA+GGG | - | chr8_4:49726455-49726474 | None:intergenic | 30.0% | |
| TGAACTATGGAAACGAAATT+AGG | - | chr8_4:49726456-49726475 | None:intergenic | 30.0% | |
| GCATATTCACATTTCAAACA+TGG | - | chr8_4:49726550-49726569 | None:intergenic | 30.0% | |
| ! | TGTTTGAAATGTGAATATGC+AGG | + | chr8_4:49726550-49726569 | Msa1330540:intron | 30.0% |
| ATAATTATCGAGGTTATGGT+GGG | - | chr8_4:49726848-49726867 | None:intergenic | 30.0% | |
| ATGGATAATTATCGAGGTTA+TGG | - | chr8_4:49726852-49726871 | None:intergenic | 30.0% | |
| ATTTGCATGGATAATTATCG+AGG | - | chr8_4:49726858-49726877 | None:intergenic | 30.0% | |
| ! | TGAAAATGAGTCGGTATTTT+GGG | - | chr8_4:49726896-49726915 | None:intergenic | 30.0% |
| AATATCCAAATAGCTAATCC+TGG | - | chr8_4:49727307-49727326 | None:intergenic | 30.0% | |
| !! | TTTGGATATTTTCAAGGTTG+TGG | + | chr8_4:49727317-49727336 | Msa1330540:CDS | 30.0% |
| CATAGTGAATAATTTCCTCA+AGG | - | chr8_4:49727389-49727408 | None:intergenic | 30.0% | |
| ! | TATGTCTTTTCCAGCTTCTA+TGG | - | chr8_4:49725249-49725268 | None:intergenic | 35.0% |
| GGCAATTAGTGTCTCTTTAT+TGG | - | chr8_4:49725279-49725298 | None:intergenic | 35.0% | |
| !!! | CGAACATTCTGCTATTTTTC+AGG | + | chr8_4:49725361-49725380 | Msa1330540:CDS | 35.0% |
| GTAAGGAACTATAGATACTC+TGG | + | chr8_4:49725429-49725448 | Msa1330540:intron | 35.0% | |
| GCTTCATGATTAATAGGGAT+TGG | + | chr8_4:49725902-49725921 | Msa1330540:intron | 35.0% | |
| ACATCTTTCAGTTTCTCAAC+AGG | - | chr8_4:49725928-49725947 | None:intergenic | 35.0% | |
| !!! | GTTGGGATGTTTTAATGCAT+CGG | - | chr8_4:49725959-49725978 | None:intergenic | 35.0% |
| ATGCATTAAAACATCCCAAC+TGG | + | chr8_4:49725959-49725978 | Msa1330540:CDS | 35.0% | |
| TATGGGGAAAAAGATAACTG+TGG | + | chr8_4:49725984-49726003 | Msa1330540:CDS | 35.0% | |
| !! | CTCTGCTACACTTTTTAACA+AGG | + | chr8_4:49726008-49726027 | Msa1330540:CDS | 35.0% |
| GACCTTATACTATGTTGTGT+TGG | + | chr8_4:49726221-49726240 | Msa1330540:intron | 35.0% | |
| AGCCAACACAACATAGTATA+AGG | - | chr8_4:49726226-49726245 | None:intergenic | 35.0% | |
| AGAACAGATGAATCCTAGAA+AGG | - | chr8_4:49726309-49726328 | None:intergenic | 35.0% | |
| TTCATCTGTTCTTGCACAAT+TGG | + | chr8_4:49726317-49726336 | Msa1330540:CDS | 35.0% | |
| TCATCTGTTCTTGCACAATT+GGG | + | chr8_4:49726318-49726337 | Msa1330540:CDS | 35.0% | |
| ! | CAGGCCATGATAATGTATAA+AGG | - | chr8_4:49726368-49726387 | None:intergenic | 35.0% |
| !! | TCTATTGTTCTGAAGTCACT+TGG | + | chr8_4:49726394-49726413 | Msa1330540:CDS | 35.0% |
| ACTATGGAAACGAAATTAGG+GGG | - | chr8_4:49726453-49726472 | None:intergenic | 35.0% | |
| GATGGATACTTAATGTTGTC+AGG | - | chr8_4:49726600-49726619 | None:intergenic | 35.0% | |
| GATAATTATCGAGGTTATGG+TGG | - | chr8_4:49726849-49726868 | None:intergenic | 35.0% | |
| ! | CTGAAAATGAGTCGGTATTT+TGG | - | chr8_4:49726897-49726916 | None:intergenic | 35.0% |
| !!! | CAAAATACCGACTCATTTTC+AGG | + | chr8_4:49726895-49726914 | Msa1330540:intron | 35.0% |
| TCACAAACCTGAAAATGAGT+CGG | - | chr8_4:49726905-49726924 | None:intergenic | 35.0% | |
| AACTTGCATCTGTATTCAGT+AGG | + | chr8_4:49727014-49727033 | Msa1330540:intron | 35.0% | |
| ACTTGCATCTGTATTCAGTA+GGG | + | chr8_4:49727015-49727034 | Msa1330540:intron | 35.0% | |
| ! | TGTAAAGAACTGAAAAGTGC+TGG | - | chr8_4:49727109-49727128 | None:intergenic | 35.0% |
| TGTCAATTTGAAAAAGGAGC+CGG | - | chr8_4:49727212-49727231 | None:intergenic | 35.0% | |
| ! | GAGCACTGTCAATTTGAAAA+AGG | - | chr8_4:49727218-49727237 | None:intergenic | 35.0% |
| !!! | TTGGTTATTTTGCTGTTTCC+AGG | + | chr8_4:49727286-49727305 | Msa1330540:intron | 35.0% |
| !! | TGTTTCCAGGATTAGCTATT+TGG | + | chr8_4:49727299-49727318 | Msa1330540:intron | 35.0% |
| TGAATAATTTCCTCAAGGGA+AGG | - | chr8_4:49727384-49727403 | None:intergenic | 35.0% | |
| ! | TATGTCTTTTCCAGCTTCTA+TGG | - | chr8_4:49725249-49725268 | None:intergenic | 35.0% |
| GGCAATTAGTGTCTCTTTAT+TGG | - | chr8_4:49725279-49725298 | None:intergenic | 35.0% | |
| !!! | CGAACATTCTGCTATTTTTC+AGG | + | chr8_4:49725361-49725380 | Msa1330540:CDS | 35.0% |
| GTAAGGAACTATAGATACTC+TGG | + | chr8_4:49725429-49725448 | Msa1330540:intron | 35.0% | |
| GCTTCATGATTAATAGGGAT+TGG | + | chr8_4:49725902-49725921 | Msa1330540:intron | 35.0% | |
| ACATCTTTCAGTTTCTCAAC+AGG | - | chr8_4:49725928-49725947 | None:intergenic | 35.0% | |
| !!! | GTTGGGATGTTTTAATGCAT+CGG | - | chr8_4:49725959-49725978 | None:intergenic | 35.0% |
| ATGCATTAAAACATCCCAAC+TGG | + | chr8_4:49725959-49725978 | Msa1330540:CDS | 35.0% | |
| TATGGGGAAAAAGATAACTG+TGG | + | chr8_4:49725984-49726003 | Msa1330540:CDS | 35.0% | |
| !! | CTCTGCTACACTTTTTAACA+AGG | + | chr8_4:49726008-49726027 | Msa1330540:CDS | 35.0% |
| GACCTTATACTATGTTGTGT+TGG | + | chr8_4:49726221-49726240 | Msa1330540:intron | 35.0% | |
| AGCCAACACAACATAGTATA+AGG | - | chr8_4:49726226-49726245 | None:intergenic | 35.0% | |
| AGAACAGATGAATCCTAGAA+AGG | - | chr8_4:49726309-49726328 | None:intergenic | 35.0% | |
| TTCATCTGTTCTTGCACAAT+TGG | + | chr8_4:49726317-49726336 | Msa1330540:CDS | 35.0% | |
| TCATCTGTTCTTGCACAATT+GGG | + | chr8_4:49726318-49726337 | Msa1330540:CDS | 35.0% | |
| ! | CAGGCCATGATAATGTATAA+AGG | - | chr8_4:49726368-49726387 | None:intergenic | 35.0% |
| !! | TCTATTGTTCTGAAGTCACT+TGG | + | chr8_4:49726394-49726413 | Msa1330540:CDS | 35.0% |
| ACTATGGAAACGAAATTAGG+GGG | - | chr8_4:49726453-49726472 | None:intergenic | 35.0% | |
| GATGGATACTTAATGTTGTC+AGG | - | chr8_4:49726600-49726619 | None:intergenic | 35.0% | |
| GATAATTATCGAGGTTATGG+TGG | - | chr8_4:49726849-49726868 | None:intergenic | 35.0% | |
| ! | CTGAAAATGAGTCGGTATTT+TGG | - | chr8_4:49726897-49726916 | None:intergenic | 35.0% |
| !!! | CAAAATACCGACTCATTTTC+AGG | + | chr8_4:49726895-49726914 | Msa1330540:intron | 35.0% |
| TCACAAACCTGAAAATGAGT+CGG | - | chr8_4:49726905-49726924 | None:intergenic | 35.0% | |
| AACTTGCATCTGTATTCAGT+AGG | + | chr8_4:49727014-49727033 | Msa1330540:intron | 35.0% | |
| ACTTGCATCTGTATTCAGTA+GGG | + | chr8_4:49727015-49727034 | Msa1330540:intron | 35.0% | |
| ! | TGTAAAGAACTGAAAAGTGC+TGG | - | chr8_4:49727109-49727128 | None:intergenic | 35.0% |
| TGTCAATTTGAAAAAGGAGC+CGG | - | chr8_4:49727212-49727231 | None:intergenic | 35.0% | |
| ! | GAGCACTGTCAATTTGAAAA+AGG | - | chr8_4:49727218-49727237 | None:intergenic | 35.0% |
| !!! | TTGGTTATTTTGCTGTTTCC+AGG | + | chr8_4:49727286-49727305 | Msa1330540:intron | 35.0% |
| !! | TGTTTCCAGGATTAGCTATT+TGG | + | chr8_4:49727299-49727318 | Msa1330540:intron | 35.0% |
| TGAATAATTTCCTCAAGGGA+AGG | - | chr8_4:49727384-49727403 | None:intergenic | 35.0% | |
| AGCTGGAAAAGACATAGCTT+TGG | + | chr8_4:49725253-49725272 | Msa1330540:CDS | 40.0% | |
| TTGTGTGTGCAACAAGAGTA+AGG | + | chr8_4:49725412-49725431 | Msa1330540:intron | 40.0% | |
| ! | TTTTTCGCTTCAGTGTATCC+AGG | + | chr8_4:49725551-49725570 | Msa1330540:intron | 40.0% |
| ! | TTTTCGCTTCAGTGTATCCA+GGG | + | chr8_4:49725552-49725571 | Msa1330540:intron | 40.0% |
| !! | TACATACCTAAAAGCACCTC+CGG | - | chr8_4:49725619-49725638 | None:intergenic | 40.0% |
| AGGAACCAAAAGGGAATGTA+TGG | + | chr8_4:49725728-49725747 | Msa1330540:intron | 40.0% | |
| ! | CAAGGTTTTCCACGATCAAT+GGG | - | chr8_4:49725820-49725839 | None:intergenic | 40.0% |
| ! | TCAAGGTTTTCCACGATCAA+TGG | - | chr8_4:49725821-49725840 | None:intergenic | 40.0% |
| AAAACATCCCAACTGGAGTA+TGG | + | chr8_4:49725966-49725985 | Msa1330540:CDS | 40.0% | |
| AAACATCCCAACTGGAGTAT+GGG | + | chr8_4:49725967-49725986 | Msa1330540:CDS | 40.0% | |
| ! | TTTTTCCCCATACTCCAGTT+GGG | - | chr8_4:49725976-49725995 | None:intergenic | 40.0% |
| CATCTGTTCTTGCACAATTG+GGG | + | chr8_4:49726319-49726338 | Msa1330540:CDS | 40.0% | |
| TCAGAACAATAGACTCTGTC+AGG | - | chr8_4:49726387-49726406 | None:intergenic | 40.0% | |
| TACTTGCAAAGATCAAGACG+AGG | - | chr8_4:49726420-49726439 | None:intergenic | 40.0% | |
| CGTCTTGATCTTTGCAAGTA+CGG | + | chr8_4:49726420-49726439 | Msa1330540:intron | 40.0% | |
| GAAAATAGACAGATCCACCT+AGG | + | chr8_4:49726483-49726502 | Msa1330540:intron | 40.0% | |
| ACTGCAAAAACTCTATGCCT+AGG | - | chr8_4:49726503-49726522 | None:intergenic | 40.0% | |
| GAAATGTGAATATGCAGGCT+TGG | + | chr8_4:49726555-49726574 | Msa1330540:intron | 40.0% | |
| GTCTTGAATCCTTGATTGTG+TGG | + | chr8_4:49727063-49727082 | Msa1330540:intron | 40.0% | |
| GTAATATGGCCACACAATCA+AGG | - | chr8_4:49727075-49727094 | None:intergenic | 40.0% | |
| ! | CCTAATGGTCATGTTTTGCT+TGG | - | chr8_4:49727145-49727164 | None:intergenic | 40.0% |
| CCAAGCAAAACATGACCATT+AGG | + | chr8_4:49727142-49727161 | Msa1330540:intron | 40.0% | |
| GAACATGACACAGTTCCTAA+TGG | - | chr8_4:49727160-49727179 | None:intergenic | 40.0% | |
| GTCAATTTGAAAAAGGAGCC+GGG | - | chr8_4:49727211-49727230 | None:intergenic | 40.0% | |
| ! | CTCCATGCTTCATAGGTTTT+AGG | + | chr8_4:49727235-49727254 | Msa1330540:intron | 40.0% |
| AGCCTAAAACCTATGAAGCA+TGG | - | chr8_4:49727240-49727259 | None:intergenic | 40.0% | |
| CAAACTAGCAGCATATTCTC+GGG | - | chr8_4:49727421-49727440 | None:intergenic | 40.0% | |
| GCAAACTAGCAGCATATTCT+CGG | - | chr8_4:49727422-49727441 | None:intergenic | 40.0% | |
| AGCTGGAAAAGACATAGCTT+TGG | + | chr8_4:49725253-49725272 | Msa1330540:CDS | 40.0% | |
| TTGTGTGTGCAACAAGAGTA+AGG | + | chr8_4:49725412-49725431 | Msa1330540:intron | 40.0% | |
| ! | TTTTTCGCTTCAGTGTATCC+AGG | + | chr8_4:49725551-49725570 | Msa1330540:intron | 40.0% |
| ! | TTTTCGCTTCAGTGTATCCA+GGG | + | chr8_4:49725552-49725571 | Msa1330540:intron | 40.0% |
| !! | TACATACCTAAAAGCACCTC+CGG | - | chr8_4:49725619-49725638 | None:intergenic | 40.0% |
| AGGAACCAAAAGGGAATGTA+TGG | + | chr8_4:49725728-49725747 | Msa1330540:intron | 40.0% | |
| ! | CAAGGTTTTCCACGATCAAT+GGG | - | chr8_4:49725820-49725839 | None:intergenic | 40.0% |
| ! | TCAAGGTTTTCCACGATCAA+TGG | - | chr8_4:49725821-49725840 | None:intergenic | 40.0% |
| AAAACATCCCAACTGGAGTA+TGG | + | chr8_4:49725966-49725985 | Msa1330540:CDS | 40.0% | |
| AAACATCCCAACTGGAGTAT+GGG | + | chr8_4:49725967-49725986 | Msa1330540:CDS | 40.0% | |
| ! | TTTTTCCCCATACTCCAGTT+GGG | - | chr8_4:49725976-49725995 | None:intergenic | 40.0% |
| CATCTGTTCTTGCACAATTG+GGG | + | chr8_4:49726319-49726338 | Msa1330540:CDS | 40.0% | |
| TCAGAACAATAGACTCTGTC+AGG | - | chr8_4:49726387-49726406 | None:intergenic | 40.0% | |
| TACTTGCAAAGATCAAGACG+AGG | - | chr8_4:49726420-49726439 | None:intergenic | 40.0% | |
| CGTCTTGATCTTTGCAAGTA+CGG | + | chr8_4:49726420-49726439 | Msa1330540:intron | 40.0% | |
| GAAAATAGACAGATCCACCT+AGG | + | chr8_4:49726483-49726502 | Msa1330540:intron | 40.0% | |
| ACTGCAAAAACTCTATGCCT+AGG | - | chr8_4:49726503-49726522 | None:intergenic | 40.0% | |
| GAAATGTGAATATGCAGGCT+TGG | + | chr8_4:49726555-49726574 | Msa1330540:intron | 40.0% | |
| GTCTTGAATCCTTGATTGTG+TGG | + | chr8_4:49727063-49727082 | Msa1330540:intron | 40.0% | |
| GTAATATGGCCACACAATCA+AGG | - | chr8_4:49727075-49727094 | None:intergenic | 40.0% | |
| ! | CCTAATGGTCATGTTTTGCT+TGG | - | chr8_4:49727145-49727164 | None:intergenic | 40.0% |
| CCAAGCAAAACATGACCATT+AGG | + | chr8_4:49727142-49727161 | Msa1330540:intron | 40.0% | |
| GAACATGACACAGTTCCTAA+TGG | - | chr8_4:49727160-49727179 | None:intergenic | 40.0% | |
| GTCAATTTGAAAAAGGAGCC+GGG | - | chr8_4:49727211-49727230 | None:intergenic | 40.0% | |
| ! | CTCCATGCTTCATAGGTTTT+AGG | + | chr8_4:49727235-49727254 | Msa1330540:intron | 40.0% |
| AGCCTAAAACCTATGAAGCA+TGG | - | chr8_4:49727240-49727259 | None:intergenic | 40.0% | |
| CAAACTAGCAGCATATTCTC+GGG | - | chr8_4:49727421-49727440 | None:intergenic | 40.0% | |
| GCAAACTAGCAGCATATTCT+CGG | - | chr8_4:49727422-49727441 | None:intergenic | 40.0% | |
| AAAGAGACACTAATTGCCGG+AGG | + | chr8_4:49725281-49725300 | Msa1330540:CDS | 45.0% | |
| TTTCGCTTCAGTGTATCCAG+GGG | + | chr8_4:49725553-49725572 | Msa1330540:intron | 45.0% | |
| TGTATCCAGGGGTTAACAGA+GGG | + | chr8_4:49725564-49725583 | Msa1330540:CDS | 45.0% | |
| CGAGTCATTCTAACTGCATC+CGG | + | chr8_4:49725597-49725616 | Msa1330540:CDS | 45.0% | |
| AGCAACTGAACATGGGAAAC+AGG | - | chr8_4:49725668-49725687 | None:intergenic | 45.0% | |
| ! | GTGTGCCATACATTCCCTTT+TGG | - | chr8_4:49725736-49725755 | None:intergenic | 45.0% |
| TGATGGAAACCCATTGATCG+TGG | + | chr8_4:49725808-49725827 | Msa1330540:intron | 45.0% | |
| AACATCCCAACTGGAGTATG+GGG | + | chr8_4:49725968-49725987 | Msa1330540:CDS | 45.0% | |
| ! | CTTTTTCCCCATACTCCAGT+TGG | - | chr8_4:49725977-49725996 | None:intergenic | 45.0% |
| ! | AGGATTGGCAAACGCATATC+AGG | - | chr8_4:49726348-49726367 | None:intergenic | 45.0% |
| GCAAAAACTCTATGCCTAGG+TGG | - | chr8_4:49726500-49726519 | None:intergenic | 45.0% | |
| GCATAGGCAAGATTCATGGA+TGG | - | chr8_4:49726618-49726637 | None:intergenic | 45.0% | |
| AGCAGCATAGGCAAGATTCA+TGG | - | chr8_4:49726622-49726641 | None:intergenic | 45.0% | |
| ATGAATCTTGCCTATGCTGC+TGG | + | chr8_4:49726621-49726640 | Msa1330540:CDS | 45.0% | |
| TGCACTAAGAACACCTGTCA+TGG | - | chr8_4:49726661-49726680 | None:intergenic | 45.0% | |
| ! | TTATCGAGGTTATGGTGGGA+TGG | - | chr8_4:49726844-49726863 | None:intergenic | 45.0% |
| TGCATCTGTATTCAGTAGGG+TGG | + | chr8_4:49727018-49727037 | Msa1330540:intron | 45.0% | |
| AATTTCCTCAAGGGAAGGTG+AGG | - | chr8_4:49727379-49727398 | None:intergenic | 45.0% | |
| AAAGAGACACTAATTGCCGG+AGG | + | chr8_4:49725281-49725300 | Msa1330540:CDS | 45.0% | |
| TTTCGCTTCAGTGTATCCAG+GGG | + | chr8_4:49725553-49725572 | Msa1330540:intron | 45.0% | |
| TGTATCCAGGGGTTAACAGA+GGG | + | chr8_4:49725564-49725583 | Msa1330540:CDS | 45.0% | |
| CGAGTCATTCTAACTGCATC+CGG | + | chr8_4:49725597-49725616 | Msa1330540:CDS | 45.0% | |
| AGCAACTGAACATGGGAAAC+AGG | - | chr8_4:49725668-49725687 | None:intergenic | 45.0% | |
| ! | GTGTGCCATACATTCCCTTT+TGG | - | chr8_4:49725736-49725755 | None:intergenic | 45.0% |
| TGATGGAAACCCATTGATCG+TGG | + | chr8_4:49725808-49725827 | Msa1330540:intron | 45.0% | |
| AACATCCCAACTGGAGTATG+GGG | + | chr8_4:49725968-49725987 | Msa1330540:CDS | 45.0% | |
| ! | CTTTTTCCCCATACTCCAGT+TGG | - | chr8_4:49725977-49725996 | None:intergenic | 45.0% |
| ! | AGGATTGGCAAACGCATATC+AGG | - | chr8_4:49726348-49726367 | None:intergenic | 45.0% |
| GCAAAAACTCTATGCCTAGG+TGG | - | chr8_4:49726500-49726519 | None:intergenic | 45.0% | |
| GCATAGGCAAGATTCATGGA+TGG | - | chr8_4:49726618-49726637 | None:intergenic | 45.0% | |
| AGCAGCATAGGCAAGATTCA+TGG | - | chr8_4:49726622-49726641 | None:intergenic | 45.0% | |
| ATGAATCTTGCCTATGCTGC+TGG | + | chr8_4:49726621-49726640 | Msa1330540:CDS | 45.0% | |
| TGCACTAAGAACACCTGTCA+TGG | - | chr8_4:49726661-49726680 | None:intergenic | 45.0% | |
| ! | TTATCGAGGTTATGGTGGGA+TGG | - | chr8_4:49726844-49726863 | None:intergenic | 45.0% |
| TGCATCTGTATTCAGTAGGG+TGG | + | chr8_4:49727018-49727037 | Msa1330540:intron | 45.0% | |
| AATTTCCTCAAGGGAAGGTG+AGG | - | chr8_4:49727379-49727398 | None:intergenic | 45.0% | |
| !! | TTTAATAAAAAAGATATTAA+AGG | - | chr8_4:49725483-49725502 | None:intergenic | 5.0% |
| !! | TTTAATAAAAAAGATATTAA+AGG | - | chr8_4:49725483-49725502 | None:intergenic | 5.0% |
| AGGAAGGACAAAAGGACCTC+CGG | - | chr8_4:49725300-49725319 | None:intergenic | 50.0% | |
| TATGCTTTCGGGCAAGAGGA+AGG | - | chr8_4:49725316-49725335 | None:intergenic | 50.0% | |
| ACGTTATGCTTTCGGGCAAG+AGG | - | chr8_4:49725320-49725339 | None:intergenic | 50.0% | |
| GCAGAATGTTCGGAATCAGC+AGG | - | chr8_4:49725353-49725372 | None:intergenic | 50.0% | |
| GTGTATCCAGGGGTTAACAG+AGG | + | chr8_4:49725563-49725582 | Msa1330540:intron | 50.0% | |
| ! | GGTTAACAGAGGGTGCACTT+AGG | + | chr8_4:49725574-49725593 | Msa1330540:CDS | 50.0% |
| GTCATTCTAACTGCATCCGG+AGG | + | chr8_4:49725600-49725619 | Msa1330540:CDS | 50.0% | |
| CTGTTCTTGCACAATTGGGG+TGG | + | chr8_4:49726322-49726341 | Msa1330540:CDS | 50.0% | |
| GACAGTGCTCCATGCTTCAT+AGG | + | chr8_4:49727228-49727247 | Msa1330540:intron | 50.0% | |
| AGGAAGGACAAAAGGACCTC+CGG | - | chr8_4:49725300-49725319 | None:intergenic | 50.0% | |
| TATGCTTTCGGGCAAGAGGA+AGG | - | chr8_4:49725316-49725335 | None:intergenic | 50.0% | |
| ACGTTATGCTTTCGGGCAAG+AGG | - | chr8_4:49725320-49725339 | None:intergenic | 50.0% | |
| GCAGAATGTTCGGAATCAGC+AGG | - | chr8_4:49725353-49725372 | None:intergenic | 50.0% | |
| GTGTATCCAGGGGTTAACAG+AGG | + | chr8_4:49725563-49725582 | Msa1330540:intron | 50.0% | |
| ! | GGTTAACAGAGGGTGCACTT+AGG | + | chr8_4:49725574-49725593 | Msa1330540:CDS | 50.0% |
| GTCATTCTAACTGCATCCGG+AGG | + | chr8_4:49725600-49725619 | Msa1330540:CDS | 50.0% | |
| CTGTTCTTGCACAATTGGGG+TGG | + | chr8_4:49726322-49726341 | Msa1330540:CDS | 50.0% | |
| GACAGTGCTCCATGCTTCAT+AGG | + | chr8_4:49727228-49727247 | Msa1330540:intron | 50.0% | |
| GCTTCTATGGCCGCAACTGT+TGG | - | chr8_4:49725236-49725255 | None:intergenic | 55.0% | |
| ACAGTTGCGGCCATAGAAGC+TGG | + | chr8_4:49725236-49725255 | Msa1330540:CDS | 55.0% | |
| CGGGCAAGAGGAAGGACAAA+AGG | - | chr8_4:49725308-49725327 | None:intergenic | 55.0% | |
| !!! | CTGCATCCGGAGGTGCTTTT+AGG | + | chr8_4:49725610-49725629 | Msa1330540:CDS | 55.0% |
| !! | CAGGAAAAGTGCTGCCACTC+AGG | - | chr8_4:49725649-49725668 | None:intergenic | 55.0% |
| TGAAAAAGGAGCCGGGCACA+CGG | - | chr8_4:49727204-49727223 | None:intergenic | 55.0% | |
| GTTGACCTCACCTTCCCTTG+AGG | + | chr8_4:49727371-49727390 | Msa1330540:CDS | 55.0% | |
| GCTTCTATGGCCGCAACTGT+TGG | - | chr8_4:49725236-49725255 | None:intergenic | 55.0% | |
| ACAGTTGCGGCCATAGAAGC+TGG | + | chr8_4:49725236-49725255 | Msa1330540:CDS | 55.0% | |
| CGGGCAAGAGGAAGGACAAA+AGG | - | chr8_4:49725308-49725327 | None:intergenic | 55.0% | |
| !!! | CTGCATCCGGAGGTGCTTTT+AGG | + | chr8_4:49725610-49725629 | Msa1330540:CDS | 55.0% |
| !! | CAGGAAAAGTGCTGCCACTC+AGG | - | chr8_4:49725649-49725668 | None:intergenic | 55.0% |
| TGAAAAAGGAGCCGGGCACA+CGG | - | chr8_4:49727204-49727223 | None:intergenic | 55.0% | |
| GTTGACCTCACCTTCCCTTG+AGG | + | chr8_4:49727371-49727390 | Msa1330540:CDS | 55.0% | |
| GTGCACCCTCTGTTAACCCC+TGG | - | chr8_4:49725572-49725591 | None:intergenic | 60.0% | |
| CTGTCATGGTTCCTCCAGCG+CGG | - | chr8_4:49726647-49726666 | None:intergenic | 60.0% | |
| TGACACATGTGCCGTGTGCC+CGG | + | chr8_4:49727190-49727209 | Msa1330540:intron | 60.0% | |
| GTGCACCCTCTGTTAACCCC+TGG | - | chr8_4:49725572-49725591 | None:intergenic | 60.0% | |
| CTGTCATGGTTCCTCCAGCG+CGG | - | chr8_4:49726647-49726666 | None:intergenic | 60.0% | |
| TGACACATGTGCCGTGTGCC+CGG | + | chr8_4:49727190-49727209 | Msa1330540:intron | 60.0% | |
| CGCGCTGGAGGAACCATGAC+AGG | + | chr8_4:49726645-49726664 | Msa1330540:CDS | 65.0% | |
| CGCGCTGGAGGAACCATGAC+AGG | + | chr8_4:49726645-49726664 | Msa1330540:CDS | 65.0% | |
| TCCAGCGCGGCCAGCAGCAT+AGG | - | chr8_4:49726634-49726653 | None:intergenic | 70.0% | |
| TATGCTGCTGGCCGCGCTGG+AGG | + | chr8_4:49726633-49726652 | Msa1330540:CDS | 70.0% | |
| TCCAGCGCGGCCAGCAGCAT+AGG | - | chr8_4:49726634-49726653 | None:intergenic | 70.0% | |
| TATGCTGCTGGCCGCGCTGG+AGG | + | chr8_4:49726633-49726652 | Msa1330540:CDS | 70.0% | |
| GCCTATGCTGCTGGCCGCGC+TGG | + | chr8_4:49726630-49726649 | Msa1330540:CDS | 75.0% | |
| GCCTATGCTGCTGGCCGCGC+TGG | + | chr8_4:49726630-49726649 | Msa1330540:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 49725233 | 49727476 | 49725233 | ID=Msa1330540;Name=Msa1330540 |
| chr8_4 | mRNA | 49725233 | 49727476 | 49725233 | ID=Msa1330540-mRNA-1;Parent=Msa1330540;Name=Msa1330540-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|0.83|0.85|7|0|290 |
| chr8_4 | exon | 49725233 | 49725382 | 49725233 | ID=Msa1330540-mRNA-1:exon:14437;Parent=Msa1330540-mRNA-1 |
| chr8_4 | exon | 49725564 | 49725631 | 49725564 | ID=Msa1330540-mRNA-1:exon:14438;Parent=Msa1330540-mRNA-1 |
| chr8_4 | exon | 49725918 | 49726029 | 49725918 | ID=Msa1330540-mRNA-1:exon:14439;Parent=Msa1330540-mRNA-1 |
| chr8_4 | exon | 49726111 | 49726215 | 49726111 | ID=Msa1330540-mRNA-1:exon:14440;Parent=Msa1330540-mRNA-1 |
| chr8_4 | exon | 49726315 | 49726436 | 49726315 | ID=Msa1330540-mRNA-1:exon:14441;Parent=Msa1330540-mRNA-1 |
| chr8_4 | exon | 49726572 | 49726718 | 49726572 | ID=Msa1330540-mRNA-1:exon:14442;Parent=Msa1330540-mRNA-1 |
| chr8_4 | exon | 49727308 | 49727476 | 49727308 | ID=Msa1330540-mRNA-1:exon:14443;Parent=Msa1330540-mRNA-1 |
| chr8_4 | CDS | 49725233 | 49725382 | 49725233 | ID=Msa1330540-mRNA-1:cds;Parent=Msa1330540-mRNA-1 |
| chr8_4 | CDS | 49725564 | 49725631 | 49725564 | ID=Msa1330540-mRNA-1:cds;Parent=Msa1330540-mRNA-1 |
| chr8_4 | CDS | 49725918 | 49726029 | 49725918 | ID=Msa1330540-mRNA-1:cds;Parent=Msa1330540-mRNA-1 |
| chr8_4 | CDS | 49726111 | 49726215 | 49726111 | ID=Msa1330540-mRNA-1:cds;Parent=Msa1330540-mRNA-1 |
| chr8_4 | CDS | 49726315 | 49726436 | 49726315 | ID=Msa1330540-mRNA-1:cds;Parent=Msa1330540-mRNA-1 |
| chr8_4 | CDS | 49726572 | 49726718 | 49726572 | ID=Msa1330540-mRNA-1:cds;Parent=Msa1330540-mRNA-1 |
| chr8_4 | CDS | 49727308 | 49727476 | 49727308 | ID=Msa1330540-mRNA-1:cds;Parent=Msa1330540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
