Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833950 | XP_013453442.1 | 74.419 | 129 | 24 | 3 | 1 | 127 | 1 | 122 | 8.31e-29 | 111 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833950 | A0A072UDG1 | 74.419 | 129 | 24 | 3 | 1 | 127 | 1 | 122 | 3.97e-29 | 111 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001550 | Msa0833950 | 0.837539 | 4.897465e-57 | -8.615850e-47 |
| Msa0002110 | Msa0833950 | 0.838331 | 3.064198e-57 | -8.615850e-47 |
| Msa0011450 | Msa0833950 | 0.826686 | 2.367229e-54 | -8.615850e-47 |
| Msa0017300 | Msa0833950 | 0.815360 | 9.622155e-52 | -8.615850e-47 |
| Msa0029520 | Msa0833950 | 0.846782 | 1.749442e-59 | -8.615850e-47 |
| Msa0030700 | Msa0833950 | -0.821704 | 3.505270e-53 | -8.615850e-47 |
| Msa0033840 | Msa0833950 | 0.836330 | 9.969953e-57 | -8.615850e-47 |
| Msa0035050 | Msa0833950 | 0.827811 | 1.273037e-54 | -8.615850e-47 |
| Msa0042950 | Msa0833950 | 0.808235 | 3.421523e-50 | -8.615850e-47 |
| Msa0046110 | Msa0833950 | 0.802047 | 6.751018e-49 | -8.615850e-47 |
| Msa0065670 | Msa0833950 | 0.817170 | 3.789466e-52 | -8.615850e-47 |
| Msa0066890 | Msa0833950 | 0.837909 | 3.934758e-57 | -8.615850e-47 |
| Msa0067590 | Msa0833950 | 0.855490 | 6.092729e-62 | -8.615850e-47 |
| Msa0077370 | Msa0833950 | -0.803523 | 3.347271e-49 | -8.615850e-47 |
| Msa0078120 | Msa0833950 | -0.818918 | 1.525459e-52 | -8.615850e-47 |
| Msa0081610 | Msa0833950 | 0.850730 | 1.405278e-60 | -8.615850e-47 |
| Msa0090510 | Msa0833950 | -0.812584 | 3.939166e-51 | -8.615850e-47 |
| Msa0093950 | Msa0833950 | 0.882993 | 6.535175e-71 | -8.615850e-47 |
| Msa0094170 | Msa0833950 | 0.837622 | 4.662874e-57 | -8.615850e-47 |
| Msa0095280 | Msa0833950 | 0.812744 | 3.634169e-51 | -8.615850e-47 |
| Msa0095810 | Msa0833950 | 0.840009 | 1.125625e-57 | -8.615850e-47 |
| Msa0111110 | Msa0833950 | 0.843575 | 1.287586e-58 | -8.615850e-47 |
| Msa0112550 | Msa0833950 | 0.807510 | 4.880772e-50 | -8.615850e-47 |
| Msa0113370 | Msa0833950 | 0.869765 | 2.422053e-66 | -8.615850e-47 |
| Msa0603690 | Msa0833950 | 0.829941 | 3.884236e-55 | -8.615850e-47 |
| Msa0605040 | Msa0833950 | 0.838655 | 2.528074e-57 | -8.615850e-47 |
| Msa0605160 | Msa0833950 | 0.837564 | 4.825171e-57 | -8.615850e-47 |
| Msa0626920 | Msa0833950 | -0.818001 | 2.461973e-52 | -8.615850e-47 |
| Msa0637930 | Msa0833950 | 0.859254 | 4.695623e-63 | -8.615850e-47 |
| Msa0638010 | Msa0833950 | 0.870370 | 1.535668e-66 | -8.615850e-47 |
| Msa0660960 | Msa0833950 | 0.805107 | 1.566228e-49 | -8.615850e-47 |
| Msa0671170 | Msa0833950 | -0.822616 | 2.154099e-53 | -8.615850e-47 |
| Msa0671210 | Msa0833950 | -0.831436 | 1.671618e-55 | -8.615850e-47 |
| Msa0686950 | Msa0833950 | 0.869509 | 2.936011e-66 | -8.615850e-47 |
| Msa0742370 | Msa0833950 | 0.828734 | 7.625095e-55 | -8.615850e-47 |
| Msa0744640 | Msa0833950 | -0.834715 | 2.552983e-56 | -8.615850e-47 |
| Msa0779450 | Msa0833950 | 0.835291 | 1.828084e-56 | -8.615850e-47 |
| Msa0788450 | Msa0833950 | 0.818461 | 1.937141e-52 | -8.615850e-47 |
| Msa0796580 | Msa0833950 | 0.957100 | 6.111649e-115 | -8.615850e-47 |
| Msa0796820 | Msa0833950 | 0.845482 | 3.951445e-59 | -8.615850e-47 |
| Msa0823480 | Msa0833950 | 0.803549 | 3.306644e-49 | -8.615850e-47 |
| Msa0825570 | Msa0833950 | 0.818309 | 2.096033e-52 | -8.615850e-47 |
| Msa0826540 | Msa0833950 | 0.818094 | 2.344933e-52 | -8.615850e-47 |
| Msa0827520 | Msa0833950 | 0.866097 | 3.656993e-65 | -8.615850e-47 |
| Msa0829210 | Msa0833950 | 0.816472 | 5.432580e-52 | -8.615850e-47 |
| Msa0833950 | Msa0841730 | -0.837455 | 5.147116e-57 | -8.615850e-47 |
| Msa0833950 | Msa0862480 | 0.836543 | 8.800921e-57 | -8.615850e-47 |
| Msa0833950 | Msa0864820 | 0.843892 | 1.059704e-58 | -8.615850e-47 |
| Msa0833950 | Msa0867660 | 0.802964 | 4.368873e-49 | -8.615850e-47 |
| Msa0833950 | Msa0879930 | -0.813961 | 1.963902e-51 | -8.615850e-47 |
| Msa0833950 | Msa0881530 | 0.892445 | 1.577278e-74 | -8.615850e-47 |
| Msa0833950 | Msa0908470 | 0.800457 | 1.428634e-48 | -8.615850e-47 |
| Msa0833950 | Msa0908510 | 0.801983 | 6.959411e-49 | -8.615850e-47 |
| Msa0833950 | Msa0908630 | 0.807736 | 4.368678e-50 | -8.615850e-47 |
| Msa0833950 | Msa0908700 | 0.803098 | 4.099842e-49 | -8.615850e-47 |
| Msa0833950 | Msa0919120 | 0.847019 | 1.506959e-59 | -8.615850e-47 |
| Msa0833950 | Msa0924840 | 0.808775 | 2.624084e-50 | -8.615850e-47 |
| Msa0833950 | Msa0924900 | 0.807627 | 4.609193e-50 | -8.615850e-47 |
| Msa0833950 | Msa0925030 | 0.820765 | 5.769717e-53 | -8.615850e-47 |
| Msa0833950 | Msa0931000 | 0.832647 | 8.390357e-56 | -8.615850e-47 |
| Msa0833950 | Msa0931120 | 0.803291 | 3.739318e-49 | -8.615850e-47 |
| Msa0833950 | Msa0931180 | 0.801210 | 1.002449e-48 | -8.615850e-47 |
| Msa0833950 | Msa0966580 | -0.800401 | 1.466413e-48 | -8.615850e-47 |
| Msa0833950 | Msa0967170 | -0.816231 | 6.151616e-52 | -8.615850e-47 |
| Msa0833950 | Msa0968470 | 0.808765 | 2.636616e-50 | -8.615850e-47 |
| Msa0833950 | Msa0971690 | 0.804316 | 2.290049e-49 | -8.615850e-47 |
| Msa0833950 | Msa0982090 | 0.900786 | 5.167073e-78 | -8.615850e-47 |
| Msa0833950 | Msa1067980 | 0.805178 | 1.512969e-49 | -8.615850e-47 |
| Msa0833950 | Msa1083970 | -0.807880 | 4.072200e-50 | -8.615850e-47 |
| Msa0833950 | Msa1085610 | 0.858242 | 9.424554e-63 | -8.615850e-47 |
| Msa0833950 | Msa1086200 | 0.804217 | 2.401521e-49 | -8.615850e-47 |
| Msa0833950 | Msa1086320 | 0.822925 | 1.824932e-53 | -8.615850e-47 |
| Msa0833950 | Msa1086350 | 0.818798 | 1.624027e-52 | -8.615850e-47 |
| Msa0833950 | Msa1086420 | 0.801604 | 8.324653e-49 | -8.615850e-47 |
| Msa0833950 | Msa1086490 | 0.842612 | 2.325100e-58 | -8.615850e-47 |
| Msa0833950 | Msa1086500 | 0.801119 | 1.046707e-48 | -8.615850e-47 |
| Msa0833950 | Msa1086510 | 0.828493 | 8.719123e-55 | -8.615850e-47 |
| Msa0833950 | Msa1086640 | 0.829535 | 4.874787e-55 | -8.615850e-47 |
| Msa0833950 | Msa1086670 | 0.838486 | 2.795222e-57 | -8.615850e-47 |
| Msa0833950 | Msa1086680 | 0.816918 | 4.315543e-52 | -8.615850e-47 |
| Msa0833950 | Msa1086760 | 0.809262 | 2.064484e-50 | -8.615850e-47 |
| Msa0833950 | Msa1086840 | 0.829350 | 5.405948e-55 | -8.615850e-47 |
| Msa0833950 | Msa1086850 | 0.809545 | 1.795030e-50 | -8.615850e-47 |
| Msa0833950 | Msa1086900 | 0.800855 | 1.184697e-48 | -8.615850e-47 |
| Msa0833950 | Msa1086940 | 0.805979 | 1.027445e-49 | -8.615850e-47 |
| Msa0833950 | Msa1087070 | 0.803317 | 3.693276e-49 | -8.615850e-47 |
| Msa0833950 | Msa1087090 | 0.803225 | 3.858754e-49 | -8.615850e-47 |
| Msa0833950 | Msa1124530 | 0.800197 | 1.613393e-48 | -8.615850e-47 |
| Msa0833950 | Msa1128270 | -0.817735 | 2.826231e-52 | -8.615850e-47 |
| Msa0833950 | Msa1128280 | -0.810034 | 1.408983e-50 | -8.615850e-47 |
| Msa0833950 | Msa1128610 | 0.825860 | 3.723113e-54 | -8.615850e-47 |
| Msa0833950 | Msa1129300 | 0.854549 | 1.143070e-61 | -8.615850e-47 |
| Msa0833950 | Msa1130060 | -0.812590 | 3.927162e-51 | -8.615850e-47 |
| Msa0833950 | Msa1143170 | 0.804401 | 2.199185e-49 | -8.615850e-47 |
| Msa0833950 | Msa1150960 | -0.802016 | 6.852317e-49 | -8.615850e-47 |
| Msa0833950 | Msa1157860 | 0.811359 | 7.284656e-51 | -8.615850e-47 |
| Msa0833950 | Msa1176170 | -0.812603 | 3.901870e-51 | -8.615850e-47 |
| Msa0833950 | Msa1206400 | 0.807474 | 4.965591e-50 | -8.615850e-47 |
| Msa0833950 | Msa1206450 | 0.812185 | 4.815136e-51 | -8.615850e-47 |
| Msa0833950 | Msa1207920 | 0.825896 | 3.649507e-54 | -8.615850e-47 |
| Msa0833950 | Msa1209870 | 0.801076 | 1.067711e-48 | -8.615850e-47 |
| Msa0833950 | Msa1258030 | 0.819740 | 9.908456e-53 | -8.615850e-47 |
| Msa0833950 | Msa1273620 | 0.835466 | 1.650951e-56 | -8.615850e-47 |
| Msa0833950 | Msa1285360 | 0.812285 | 4.577421e-51 | -8.615850e-47 |
| Msa0833950 | Msa1298390 | 0.808374 | 3.196565e-50 | -8.615850e-47 |
| Msa0833950 | Msa1307160 | -0.812483 | 4.144111e-51 | -8.615850e-47 |
| Msa0833950 | Msa1311600 | 0.835895 | 1.285581e-56 | -8.615850e-47 |
| Msa0833950 | Msa1341060 | -0.808743 | 2.666201e-50 | -8.615850e-47 |
| Msa0833950 | Msa1342960 | 0.875687 | 2.532622e-68 | -8.615850e-47 |
| Msa0833950 | Msa1354520 | 0.804581 | 2.016432e-49 | -8.615850e-47 |
| Msa0833950 | Msa1354660 | 0.801967 | 7.013539e-49 | -8.615850e-47 |
| Msa0833950 | Msa1354790 | 0.802365 | 5.808429e-49 | -8.615850e-47 |
| Msa0833950 | Msa1354960 | 0.804036 | 2.619209e-49 | -8.615850e-47 |
| Msa0833950 | Msa1356600 | 0.804865 | 1.759620e-49 | -8.615850e-47 |
| Msa0833950 | Msa1361670 | 0.827862 | 1.237158e-54 | -8.615850e-47 |
| Msa0833950 | Msa1364350 | 0.890422 | 9.993699e-74 | -8.615850e-47 |
| Msa0833950 | Msa1365030 | 0.833088 | 6.518964e-56 | -8.615850e-47 |
| Msa0833950 | Msa1365990 | 0.800401 | 1.466254e-48 | -8.615850e-47 |
| Msa0833950 | Msa1366020 | 0.800896 | 1.162138e-48 | -8.615850e-47 |
| Msa0833950 | Msa1366060 | 0.804909 | 1.722689e-49 | -8.615850e-47 |
| Msa0833950 | Msa1367400 | 0.828156 | 1.051450e-54 | -8.615850e-47 |
| Msa0833950 | Msa1368260 | 0.801201 | 1.006821e-48 | -8.615850e-47 |
| Msa0833950 | Msa1372770 | 0.813346 | 2.681591e-51 | -8.615850e-47 |
| Msa0833950 | Msa1375610 | 0.851937 | 6.408843e-61 | -8.615850e-47 |
| Msa0833950 | Msa1376550 | 0.837544 | 4.882921e-57 | -8.615850e-47 |
| Msa0833950 | Msa1382380 | 0.902164 | 1.282045e-78 | -8.615850e-47 |
| Msa0833950 | Msa1383630 | -0.821552 | 3.799351e-53 | -8.615850e-47 |
| Msa0833950 | Msa1384760 | 0.814996 | 1.159110e-51 | -8.615850e-47 |
| Msa0833950 | Msa1385390 | 0.804034 | 2.622370e-49 | -8.615850e-47 |
| Msa0833950 | Msa1388030 | 0.965063 | 4.032336e-124 | -8.615850e-47 |
| Msa0833950 | Msa1391130 | 0.801832 | 7.475145e-49 | -8.615850e-47 |
| Msa0833950 | Msa1391140 | 0.802239 | 6.165805e-49 | -8.615850e-47 |
| Msa0833950 | Msa1431510 | 0.825070 | 5.726777e-54 | -8.615850e-47 |
| Msa0833950 | Msa1462680 | 0.825616 | 4.254689e-54 | -8.615850e-47 |
| Msa0120880 | Msa0833950 | -0.800895 | 1.163033e-48 | -8.615850e-47 |
| Msa0123800 | Msa0833950 | -0.828305 | 9.681992e-55 | -8.615850e-47 |
| Msa0126000 | Msa0833950 | 0.801037 | 1.087516e-48 | -8.615850e-47 |
| Msa0126750 | Msa0833950 | 0.808803 | 2.588505e-50 | -8.615850e-47 |
| Msa0136870 | Msa0833950 | 0.862387 | 5.255183e-64 | -8.615850e-47 |
| Msa0138990 | Msa0833950 | 0.858668 | 7.036375e-63 | -8.615850e-47 |
| Msa0140770 | Msa0833950 | 0.838960 | 2.108477e-57 | -8.615850e-47 |
| Msa0151510 | Msa0833950 | 0.817025 | 4.084414e-52 | -8.615850e-47 |
| Msa0152850 | Msa0833950 | -0.806885 | 6.620425e-50 | -8.615850e-47 |
| Msa0154880 | Msa0833950 | 0.814132 | 1.800244e-51 | -8.615850e-47 |
| Msa0154890 | Msa0833950 | 0.842907 | 1.941404e-58 | -8.615850e-47 |
| Msa0158890 | Msa0833950 | 0.803430 | 3.498884e-49 | -8.615850e-47 |
| Msa0168310 | Msa0833950 | -0.825066 | 5.738558e-54 | -8.615850e-47 |
| Msa0168770 | Msa0833950 | 0.820855 | 5.501770e-53 | -8.615850e-47 |
| Msa0170630 | Msa0833950 | -0.807696 | 4.455666e-50 | -8.615850e-47 |
| Msa0173950 | Msa0833950 | 0.847230 | 1.318571e-59 | -8.615850e-47 |
| Msa0178840 | Msa0833950 | 0.841913 | 3.560997e-58 | -8.615850e-47 |
| Msa0187590 | Msa0833950 | 0.840778 | 7.082842e-58 | -8.615850e-47 |
| Msa0220400 | Msa0833950 | 0.895009 | 1.439026e-75 | -8.615850e-47 |
| Msa0221850 | Msa0833950 | 0.842897 | 1.952938e-58 | -8.615850e-47 |
| Msa0223830 | Msa0833950 | 0.803158 | 3.983465e-49 | -8.615850e-47 |
| Msa0225190 | Msa0833950 | 0.804026 | 2.631844e-49 | -8.615850e-47 |
| Msa0225790 | Msa0833950 | 0.833963 | 3.942105e-56 | -8.615850e-47 |
| Msa0370580 | Msa0833950 | 0.860162 | 2.502323e-63 | -8.615850e-47 |
| Msa0372300 | Msa0833950 | -0.807060 | 6.079302e-50 | -8.615850e-47 |
| Msa0380400 | Msa0833950 | 0.839025 | 2.027733e-57 | -8.615850e-47 |
| Msa0383870 | Msa0833950 | 0.848533 | 5.770221e-60 | -8.615850e-47 |
| Msa0385930 | Msa0833950 | 0.804821 | 1.797334e-49 | -8.615850e-47 |
| Msa0389080 | Msa0833950 | 0.836514 | 8.951071e-57 | -8.615850e-47 |
| Msa0402070 | Msa0833950 | 0.805573 | 1.250874e-49 | -8.615850e-47 |
| Msa0403480 | Msa0833950 | 0.822739 | 2.016217e-53 | -8.615850e-47 |
| Msa0405460 | Msa0833950 | 0.802372 | 5.787650e-49 | -8.615850e-47 |
| Msa0405470 | Msa0833950 | 0.819270 | 1.268132e-52 | -8.615850e-47 |
| Msa0405550 | Msa0833950 | 0.822287 | 2.568191e-53 | -8.615850e-47 |
| Msa0420610 | Msa0833950 | -0.813312 | 2.728112e-51 | -8.615850e-47 |
| Msa0461620 | Msa0833950 | 0.801493 | 8.772424e-49 | -8.615850e-47 |
| Msa0476170 | Msa0833950 | 0.841858 | 3.683071e-58 | -8.615850e-47 |
| Msa0476890 | Msa0833950 | 0.820068 | 8.338265e-53 | -8.615850e-47 |
| Msa0479760 | Msa0833950 | 0.834287 | 3.270589e-56 | -8.615850e-47 |
| Msa0480090 | Msa0833950 | 0.819807 | 9.566529e-53 | -8.615850e-47 |
| Msa0240900 | Msa0833950 | -0.800785 | 1.224298e-48 | -8.615850e-47 |
| Msa0254470 | Msa0833950 | -0.802838 | 4.640029e-49 | -8.615850e-47 |
| Msa0258390 | Msa0833950 | -0.810131 | 1.342803e-50 | -8.615850e-47 |
| Msa0260580 | Msa0833950 | 0.839967 | 1.154063e-57 | -8.615850e-47 |
| Msa0260640 | Msa0833950 | 0.825754 | 3.944701e-54 | -8.615850e-47 |
| Msa0261660 | Msa0833950 | 0.830538 | 2.776584e-55 | -8.615850e-47 |
| Msa0268210 | Msa0833950 | 0.851295 | 9.737419e-61 | -8.615850e-47 |
| Msa0268350 | Msa0833950 | 0.802124 | 6.510742e-49 | -8.615850e-47 |
| Msa0268440 | Msa0833950 | 0.812469 | 4.173498e-51 | -8.615850e-47 |
| Msa0268450 | Msa0833950 | 0.854799 | 9.677600e-62 | -8.615850e-47 |
| Msa0268670 | Msa0833950 | 0.855590 | 5.698288e-62 | -8.615850e-47 |
| Msa0268710 | Msa0833950 | 0.807964 | 3.907169e-50 | -8.615850e-47 |
| Msa0268880 | Msa0833950 | 0.851917 | 6.491032e-61 | -8.615850e-47 |
| Msa0268910 | Msa0833950 | 0.801067 | 1.072479e-48 | -8.615850e-47 |
| Msa0269090 | Msa0833950 | 0.833846 | 4.218110e-56 | -8.615850e-47 |
| Msa0269170 | Msa0833950 | 0.803025 | 4.244953e-49 | -8.615850e-47 |
| Msa0293720 | Msa0833950 | -0.823318 | 1.477290e-53 | -8.615850e-47 |
| Msa0297610 | Msa0833950 | -0.820923 | 5.307071e-53 | -8.615850e-47 |
| Msa0299530 | Msa0833950 | 0.849601 | 2.912824e-60 | -8.615850e-47 |
| Msa0310720 | Msa0833950 | 0.834243 | 3.354913e-56 | -8.615850e-47 |
| Msa0310730 | Msa0833950 | 0.844584 | 6.905022e-59 | -8.615850e-47 |
| Msa0317970 | Msa0833950 | -0.804199 | 2.423080e-49 | -8.615850e-47 |
| Msa0334450 | Msa0833950 | 0.801365 | 9.320466e-49 | -8.615850e-47 |
| Msa0337710 | Msa0833950 | -0.803120 | 4.056570e-49 | -8.615850e-47 |
| Msa0343500 | Msa0833950 | -0.807005 | 6.244544e-50 | -8.615850e-47 |
| Msa0483970 | Msa0833950 | 0.821171 | 4.652798e-53 | -8.615850e-47 |
| Msa0493180 | Msa0833950 | 0.817735 | 2.826176e-52 | -8.615850e-47 |
| Msa0500610 | Msa0833950 | 0.807765 | 4.307193e-50 | -8.615850e-47 |
| Msa0523430 | Msa0833950 | 0.843879 | 1.067968e-58 | -8.615850e-47 |
| Msa0523490 | Msa0833950 | 0.836750 | 7.790584e-57 | -8.615850e-47 |
| Msa0536350 | Msa0833950 | -0.826273 | 2.969808e-54 | -8.615850e-47 |
| Msa0548650 | Msa0833950 | 0.860253 | 2.349311e-63 | -8.615850e-47 |
| Msa0550990 | Msa0833950 | 0.812531 | 4.045481e-51 | -8.615850e-47 |
| Msa0576020 | Msa0833950 | 0.837966 | 3.804941e-57 | -8.615850e-47 |
| Msa0576080 | Msa0833950 | 0.853664 | 2.058186e-61 | -8.615850e-47 |
| Msa0576120 | Msa0833950 | 0.875748 | 2.412109e-68 | -8.615850e-47 |
| Msa0582500 | Msa0833950 | 0.804896 | 1.733095e-49 | -8.615850e-47 |
| Msa0582560 | Msa0833950 | 0.815560 | 8.683669e-52 | -8.615850e-47 |
| Msa0582650 | Msa0833950 | 0.805034 | 1.622297e-49 | -8.615850e-47 |
| Msa0582860 | Msa0833950 | 0.829299 | 5.564631e-55 | -8.615850e-47 |
| Msa0589260 | Msa0833950 | 0.819405 | 1.181562e-52 | -8.615850e-47 |
| Msa0590620 | Msa0833950 | 0.815696 | 8.098711e-52 | -8.615850e-47 |
| Msa0592330 | Msa0833950 | -0.840786 | 7.048285e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0833950 | MtrunA17_Chr5g0399701 | 74.419 | 129 | 24 | 3 | 1 | 127 | 1 | 122 | 7.64e-33 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 46 sgRNAs with CRISPR-Local
Find 46 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCTCATGATTGGGCTTCC+TGG | 0.247172 | 5_4:+7029452 | None:intergenic |
| CTTCCTGGTGGCAGTGATAC+AGG | 0.253219 | 5_4:+7029467 | None:intergenic |
| GTGATACAGGGGAGGGTGCT+TGG | 0.269078 | 5_4:+7029480 | None:intergenic |
| CTCGGGCCCATGCTCATGCT+TGG | 0.274606 | 5_4:+7029383 | None:intergenic |
| CTCATGCTTGGGCTCATGCT+CGG | 0.309614 | 5_4:+7029425 | None:intergenic |
| CTCGGGCTCATGCTCATGAT+TGG | 0.309691 | 5_4:+7029443 | None:intergenic |
| ATGCTACCATTATTCTTTGC+TGG | 0.315901 | 5_4:-7029206 | Msa0833950:CDS |
| CTCATGCTTGGGCTCATACT+TGG | 0.360267 | 5_4:+7029395 | None:intergenic |
| CTGTGAACAACCGCGTTGCT+TGG | 0.369585 | 5_4:+7029242 | None:intergenic |
| TCATGCTTGGGCTCATGCTC+GGG | 0.375831 | 5_4:+7029426 | None:intergenic |
| TTGCTTGGACTTGAAGCAAC+TGG | 0.388265 | 5_4:+7029257 | None:intergenic |
| GAAGGTGATGGTGAGGAAGC+TGG | 0.389101 | 5_4:+7029305 | None:intergenic |
| CTTGGACTCATGCTCATGCT+TGG | 0.391770 | 5_4:+7029413 | None:intergenic |
| TGATACAGGGGAGGGTGCTT+GGG | 0.395750 | 5_4:+7029481 | None:intergenic |
| TCGGGCCCATGCTCATGCTT+GGG | 0.410770 | 5_4:+7029384 | None:intergenic |
| GGGAAAGGTGGGCTCATACT+TGG | 0.429231 | 5_4:+7029347 | None:intergenic |
| TTGGACTCATGCTCATGCTT+GGG | 0.445374 | 5_4:+7029414 | None:intergenic |
| CTTGGACTCATGCTCATGCT+CGG | 0.451338 | 5_4:+7029365 | None:intergenic |
| GCTAGCCATGTCTCTTGCTC+TGG | 0.451838 | 5_4:-7029519 | Msa0833950:CDS |
| GCAGTACCAGCAAAGAATAA+TGG | 0.458474 | 5_4:+7029200 | None:intergenic |
| TTCCTGGTGGCAGTGATACA+GGG | 0.459768 | 5_4:+7029468 | None:intergenic |
| AGGGGAGGGTGCTTGGGCTA+TGG | 0.461739 | 5_4:+7029487 | None:intergenic |
| TCGGGCTCATGCTCATGATT+GGG | 0.467264 | 5_4:+7029444 | None:intergenic |
| TTGGACTCATGCTCATGCTC+GGG | 0.527157 | 5_4:+7029366 | None:intergenic |
| GGAGATGGTGAAGCAGCAGT+AGG | 0.535138 | 5_4:+7029326 | None:intergenic |
| GGTGGCAGTGATACAGGGGA+GGG | 0.541381 | 5_4:+7029473 | None:intergenic |
| ATTATCAGACATCGATTCTC+CGG | 0.547569 | 5_4:+7029280 | None:intergenic |
| GATTCTCCGGTGGAAGGTGA+TGG | 0.549766 | 5_4:+7029293 | None:intergenic |
| TATGAGCCCAAGCATGAGCA+TGG | 0.552073 | 5_4:-7029390 | Msa0833950:CDS |
| TCCTGGTGGCAGTGATACAG+GGG | 0.558755 | 5_4:+7029469 | None:intergenic |
| TGGTGGCAGTGATACAGGGG+AGG | 0.573893 | 5_4:+7029472 | None:intergenic |
| TCCCCTGTATCACTGCCACC+AGG | 0.577522 | 5_4:-7029470 | Msa0833950:CDS |
| GAAGCAGCAGTAGGGAAAGG+TGG | 0.580658 | 5_4:+7029335 | None:intergenic |
| AAGCAGCAGTAGGGAAAGGT+GGG | 0.588458 | 5_4:+7029336 | None:intergenic |
| TCCTCACCATCACCTTCCAC+CGG | 0.596602 | 5_4:-7029299 | Msa0833950:CDS |
| GGTGAAGCAGCAGTAGGGAA+AGG | 0.605004 | 5_4:+7029332 | None:intergenic |
| GATGGTGAGGAAGCTGGAGA+TGG | 0.605949 | 5_4:+7029311 | None:intergenic |
| GAGATGGTGAAGCAGCAGTA+GGG | 0.615443 | 5_4:+7029327 | None:intergenic |
| CTCATGATTGGGCTTCCTGG+TGG | 0.617444 | 5_4:+7029455 | None:intergenic |
| GACATCGATTCTCCGGTGGA+AGG | 0.621189 | 5_4:+7029287 | None:intergenic |
| TCCGGTGGAAGGTGATGGTG+AGG | 0.623620 | 5_4:+7029298 | None:intergenic |
| ATGAGCCCAAGCATGAGCAT+GGG | 0.631721 | 5_4:-7029389 | Msa0833950:CDS |
| TGTCACCAGAGCAAGAGACA+TGG | 0.667198 | 5_4:+7029514 | None:intergenic |
| AGACATGGCTAGCATGAGTG+TGG | 0.667612 | 5_4:+7029529 | None:intergenic |
| ATCAGACATCGATTCTCCGG+TGG | 0.683845 | 5_4:+7029283 | None:intergenic |
| TGCTTCAAGTCCAAGCAACG+CGG | 0.698866 | 5_4:-7029252 | Msa0833950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATCAGACATCGATTCTC+CGG | + | chr5_4:7029452-7029471 | None:intergenic | 35.0% |
| ATGCTACCATTATTCTTTGC+TGG | - | chr5_4:7029523-7029542 | Msa0833950:CDS | 35.0% | |
| GCAGTACCAGCAAAGAATAA+TGG | + | chr5_4:7029532-7029551 | None:intergenic | 40.0% | |
| TTGGACTCATGCTCATGCTT+GGG | + | chr5_4:7029318-7029337 | None:intergenic | 45.0% | |
| TTGCTTGGACTTGAAGCAAC+TGG | + | chr5_4:7029475-7029494 | None:intergenic | 45.0% | |
| AGACATGGCTAGCATGAGTG+TGG | + | chr5_4:7029203-7029222 | None:intergenic | 50.0% | |
| TGTCACCAGAGCAAGAGACA+TGG | + | chr5_4:7029218-7029237 | None:intergenic | 50.0% | |
| TTCCTGGTGGCAGTGATACA+GGG | + | chr5_4:7029264-7029283 | None:intergenic | 50.0% | |
| ATGCTCATGATTGGGCTTCC+TGG | + | chr5_4:7029280-7029299 | None:intergenic | 50.0% | |
| TCGGGCTCATGCTCATGATT+GGG | + | chr5_4:7029288-7029307 | None:intergenic | 50.0% | |
| CTTGGACTCATGCTCATGCT+TGG | + | chr5_4:7029319-7029338 | None:intergenic | 50.0% | |
| CTCATGCTTGGGCTCATACT+TGG | + | chr5_4:7029337-7029356 | None:intergenic | 50.0% | |
| TATGAGCCCAAGCATGAGCA+TGG | - | chr5_4:7029339-7029358 | Msa0833950:CDS | 50.0% | |
| ATGAGCCCAAGCATGAGCAT+GGG | - | chr5_4:7029310-7029329 | Msa0833950:CDS | 50.0% | |
| TTGGACTCATGCTCATGCTC+GGG | + | chr5_4:7029366-7029385 | None:intergenic | 50.0% | |
| CTTGGACTCATGCTCATGCT+CGG | + | chr5_4:7029319-7029338 | None:intergenic | 50.0% | |
| AAGCAGCAGTAGGGAAAGGT+GGG | + | chr5_4:7029396-7029415 | None:intergenic | 50.0% | |
| GAGATGGTGAAGCAGCAGTA+GGG | + | chr5_4:7029405-7029424 | None:intergenic | 50.0% | |
| !! | ATCAGACATCGATTCTCCGG+TGG | + | chr5_4:7029449-7029468 | None:intergenic | 50.0% |
| TGCTTCAAGTCCAAGCAACG+CGG | - | chr5_4:7029477-7029496 | Msa0833950:CDS | 50.0% | |
| GCTAGCCATGTCTCTTGCTC+TGG | - | chr5_4:7029210-7029229 | Msa0833950:CDS | 55.0% | |
| !! | TGATACAGGGGAGGGTGCTT+GGG | + | chr5_4:7029251-7029270 | None:intergenic | 55.0% |
| TCCTGGTGGCAGTGATACAG+GGG | + | chr5_4:7029263-7029282 | None:intergenic | 55.0% | |
| CTTCCTGGTGGCAGTGATAC+AGG | + | chr5_4:7029265-7029284 | None:intergenic | 55.0% | |
| CTCATGATTGGGCTTCCTGG+TGG | + | chr5_4:7029277-7029296 | None:intergenic | 55.0% | |
| CTCGGGCTCATGCTCATGAT+TGG | + | chr5_4:7029289-7029308 | None:intergenic | 55.0% | |
| TCATGCTTGGGCTCATGCTC+GGG | + | chr5_4:7029306-7029325 | None:intergenic | 55.0% | |
| CTCATGCTTGGGCTCATGCT+CGG | + | chr5_4:7029307-7029326 | None:intergenic | 55.0% | |
| ! | GGGAAAGGTGGGCTCATACT+TGG | + | chr5_4:7029385-7029404 | None:intergenic | 55.0% |
| GAAGCAGCAGTAGGGAAAGG+TGG | + | chr5_4:7029397-7029416 | None:intergenic | 55.0% | |
| GGTGAAGCAGCAGTAGGGAA+AGG | + | chr5_4:7029400-7029419 | None:intergenic | 55.0% | |
| GGAGATGGTGAAGCAGCAGT+AGG | + | chr5_4:7029406-7029425 | None:intergenic | 55.0% | |
| GATGGTGAGGAAGCTGGAGA+TGG | + | chr5_4:7029421-7029440 | None:intergenic | 55.0% | |
| ! | GAAGGTGATGGTGAGGAAGC+TGG | + | chr5_4:7029427-7029446 | None:intergenic | 55.0% |
| TCCTCACCATCACCTTCCAC+CGG | - | chr5_4:7029430-7029449 | Msa0833950:CDS | 55.0% | |
| GATTCTCCGGTGGAAGGTGA+TGG | + | chr5_4:7029439-7029458 | None:intergenic | 55.0% | |
| !! | GACATCGATTCTCCGGTGGA+AGG | + | chr5_4:7029445-7029464 | None:intergenic | 55.0% |
| CTGTGAACAACCGCGTTGCT+TGG | + | chr5_4:7029490-7029509 | None:intergenic | 55.0% | |
| !! | GTGATACAGGGGAGGGTGCT+TGG | + | chr5_4:7029252-7029271 | None:intergenic | 60.0% |
| GGTGGCAGTGATACAGGGGA+GGG | + | chr5_4:7029259-7029278 | None:intergenic | 60.0% | |
| TGGTGGCAGTGATACAGGGG+AGG | + | chr5_4:7029260-7029279 | None:intergenic | 60.0% | |
| TCCCCTGTATCACTGCCACC+AGG | - | chr5_4:7029259-7029278 | Msa0833950:CDS | 60.0% | |
| TCGGGCCCATGCTCATGCTT+GGG | + | chr5_4:7029348-7029367 | None:intergenic | 60.0% | |
| ! | TCCGGTGGAAGGTGATGGTG+AGG | + | chr5_4:7029434-7029453 | None:intergenic | 60.0% |
| !! | AGGGGAGGGTGCTTGGGCTA+TGG | + | chr5_4:7029245-7029264 | None:intergenic | 65.0% |
| CTCGGGCCCATGCTCATGCT+TGG | + | chr5_4:7029349-7029368 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 7029184 | 7029567 | 7029184 | ID=Msa0833950;Name=Msa0833950 |
| chr5_4 | mRNA | 7029184 | 7029567 | 7029184 | ID=Msa0833950-mRNA-1;Parent=Msa0833950;Name=Msa0833950-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|-1|0|1|-1|1|1|0|127 |
| chr5_4 | exon | 7029184 | 7029567 | 7029184 | ID=Msa0833950-mRNA-1:exon:3107;Parent=Msa0833950-mRNA-1 |
| chr5_4 | CDS | 7029184 | 7029567 | 7029184 | ID=Msa0833950-mRNA-1:cds;Parent=Msa0833950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
