Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140770 | XP_013462277.1 | 99.797 | 492 | 1 | 0 | 1 | 492 | 1 | 492 | 0.0 | 1028 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140770 | sp|P25890|CATA_PEA | 92.105 | 494 | 37 | 1 | 1 | 492 | 1 | 494 | 0.0 | 968 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140770 | A0A072V3A8 | 99.797 | 492 | 1 | 0 | 1 | 492 | 1 | 492 | 0.0 | 1028 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002110 | Msa0140770 | 0.827845 | 1.249296e-54 | -8.615850e-47 |
| Msa0029520 | Msa0140770 | 0.814859 | 1.243291e-51 | -8.615850e-47 |
| Msa0033840 | Msa0140770 | 0.809012 | 2.334736e-50 | -8.615850e-47 |
| Msa0046110 | Msa0140770 | 0.828927 | 6.848800e-55 | -8.615850e-47 |
| Msa0065670 | Msa0140770 | 0.800400 | 1.467120e-48 | -8.615850e-47 |
| Msa0066890 | Msa0140770 | 0.816536 | 5.257071e-52 | -8.615850e-47 |
| Msa0067590 | Msa0140770 | 0.841895 | 3.599398e-58 | -8.615850e-47 |
| Msa0081610 | Msa0140770 | 0.848349 | 6.487461e-60 | -8.615850e-47 |
| Msa0093950 | Msa0140770 | 0.819813 | 9.534880e-53 | -8.615850e-47 |
| Msa0094170 | Msa0140770 | 0.828145 | 1.058083e-54 | -8.615850e-47 |
| Msa0095810 | Msa0140770 | 0.829128 | 6.120514e-55 | -8.615850e-47 |
| Msa0111110 | Msa0140770 | 0.814404 | 1.567596e-51 | -8.615850e-47 |
| Msa0113370 | Msa0140770 | 0.810565 | 1.082336e-50 | -8.615850e-47 |
| Msa0120880 | Msa0140770 | -0.841459 | 4.691065e-58 | -8.615850e-47 |
| Msa0138990 | Msa0140770 | 0.872195 | 3.831153e-67 | -8.615850e-47 |
| Msa0140770 | Msa0154880 | 0.802318 | 5.938208e-49 | -8.615850e-47 |
| Msa0140770 | Msa0154890 | 0.825661 | 4.150677e-54 | -8.615850e-47 |
| Msa0140770 | Msa0156760 | -0.840430 | 8.736044e-58 | -8.615850e-47 |
| Msa0140770 | Msa0168770 | 0.803775 | 2.967188e-49 | -8.615850e-47 |
| Msa0140770 | Msa0173950 | 0.838675 | 2.497949e-57 | -8.615850e-47 |
| Msa0140770 | Msa0187590 | 0.829568 | 4.786993e-55 | -8.615850e-47 |
| Msa0140770 | Msa0189560 | 0.837591 | 4.750398e-57 | -8.615850e-47 |
| Msa0140770 | Msa0204960 | -0.807609 | 4.649100e-50 | -8.615850e-47 |
| Msa0140770 | Msa0220400 | 0.834807 | 2.420620e-56 | -8.615850e-47 |
| Msa0140770 | Msa0220990 | -0.832564 | 8.795820e-56 | -8.615850e-47 |
| Msa0140770 | Msa0225790 | 0.804773 | 1.839184e-49 | -8.615850e-47 |
| Msa0140770 | Msa0240900 | -0.823209 | 1.566867e-53 | -8.615850e-47 |
| Msa0140770 | Msa0258390 | -0.810763 | 9.806249e-51 | -8.615850e-47 |
| Msa0140770 | Msa0260580 | 0.826510 | 2.607949e-54 | -8.615850e-47 |
| Msa0140770 | Msa0260640 | 0.809651 | 1.703243e-50 | -8.615850e-47 |
| Msa0140770 | Msa0261170 | -0.803170 | 3.962010e-49 | -8.615850e-47 |
| Msa0140770 | Msa0281530 | -0.814690 | 1.355095e-51 | -8.615850e-47 |
| Msa0140770 | Msa0295460 | 0.804448 | 2.149924e-49 | -8.615850e-47 |
| Msa0140770 | Msa0297610 | -0.820571 | 6.391885e-53 | -8.615850e-47 |
| Msa0140770 | Msa0300280 | -0.827118 | 1.866636e-54 | -8.615850e-47 |
| Msa0140770 | Msa0317970 | -0.810973 | 8.830323e-51 | -8.615850e-47 |
| Msa0140770 | Msa0319920 | -0.810748 | 9.880344e-51 | -8.615850e-47 |
| Msa0140770 | Msa0326170 | 0.814570 | 1.440321e-51 | -8.615850e-47 |
| Msa0140770 | Msa0334450 | 0.851484 | 8.615286e-61 | -8.615850e-47 |
| Msa0140770 | Msa0337710 | -0.827199 | 1.785070e-54 | -8.615850e-47 |
| Msa0140770 | Msa0343500 | -0.857252 | 1.852646e-62 | -8.615850e-47 |
| Msa0140770 | Msa0370580 | 0.831592 | 1.529915e-55 | -8.615850e-47 |
| Msa0140770 | Msa0373120 | 0.802489 | 5.474802e-49 | -8.615850e-47 |
| Msa0140770 | Msa0375330 | 0.819835 | 9.428046e-53 | -8.615850e-47 |
| Msa0140770 | Msa0380400 | 0.802240 | 6.162126e-49 | -8.615850e-47 |
| Msa0140770 | Msa0383870 | 0.800947 | 1.134924e-48 | -8.615850e-47 |
| Msa0140770 | Msa0385930 | 0.904683 | 9.497701e-80 | -8.615850e-47 |
| Msa0140770 | Msa0389080 | 0.834992 | 2.174842e-56 | -8.615850e-47 |
| Msa0140770 | Msa0402070 | 0.801887 | 7.281801e-49 | -8.615850e-47 |
| Msa0140770 | Msa0403480 | 0.864213 | 1.429456e-64 | -8.615850e-47 |
| Msa0140770 | Msa0437020 | -0.817471 | 3.242161e-52 | -8.615850e-47 |
| Msa0140770 | Msa0476170 | 0.804134 | 2.498822e-49 | -8.615850e-47 |
| Msa0140770 | Msa0479760 | 0.998166 | 9.091095e-258 | -8.615850e-47 |
| Msa0140770 | Msa0523420 | 0.819089 | 1.394603e-52 | -8.615850e-47 |
| Msa0140770 | Msa0523430 | 0.967852 | 7.485709e-128 | -8.615850e-47 |
| Msa0140770 | Msa0523490 | 0.929273 | 8.807146e-93 | -8.615850e-47 |
| Msa0140770 | Msa0536350 | -0.813761 | 2.173090e-51 | -8.615850e-47 |
| Msa0140770 | Msa0559450 | 0.843176 | 1.645671e-58 | -8.615850e-47 |
| Msa0140770 | Msa0566940 | 0.832170 | 1.101432e-55 | -8.615850e-47 |
| Msa0140770 | Msa0572550 | 0.814911 | 1.210162e-51 | -8.615850e-47 |
| Msa0140770 | Msa0576020 | 0.856383 | 3.339288e-62 | -8.615850e-47 |
| Msa0140770 | Msa0576080 | 0.861938 | 7.213814e-64 | -8.615850e-47 |
| Msa0140770 | Msa0576090 | 0.856565 | 2.951386e-62 | -8.615850e-47 |
| Msa0140770 | Msa0576120 | 0.875399 | 3.176458e-68 | -8.615850e-47 |
| Msa0140770 | Msa0583360 | 0.817031 | 4.071131e-52 | -8.615850e-47 |
| Msa0140770 | Msa0590620 | 0.809949 | 1.469183e-50 | -8.615850e-47 |
| Msa0140770 | Msa0630770 | 0.837308 | 5.610694e-57 | -8.615850e-47 |
| Msa0140770 | Msa0637930 | 0.803483 | 3.411662e-49 | -8.615850e-47 |
| Msa0140770 | Msa0638010 | 0.841387 | 4.902411e-58 | -8.615850e-47 |
| Msa0140770 | Msa0646410 | 0.817354 | 3.445164e-52 | -8.615850e-47 |
| Msa0140770 | Msa0664750 | -0.800821 | 1.204172e-48 | -8.615850e-47 |
| Msa0140770 | Msa0671170 | -0.803283 | 3.752847e-49 | -8.615850e-47 |
| Msa0140770 | Msa0671210 | -0.808756 | 2.648681e-50 | -8.615850e-47 |
| Msa0140770 | Msa0686950 | 0.852106 | 5.739090e-61 | -8.615850e-47 |
| Msa0140770 | Msa0693340 | 0.808940 | 2.418819e-50 | -8.615850e-47 |
| Msa0140770 | Msa0712860 | -0.801925 | 7.152816e-49 | -8.615850e-47 |
| Msa0140770 | Msa0726170 | 0.801911 | 7.199846e-49 | -8.615850e-47 |
| Msa0140770 | Msa0742370 | 0.838070 | 3.576510e-57 | -8.615850e-47 |
| Msa0140770 | Msa0765960 | 0.810726 | 9.986260e-51 | -8.615850e-47 |
| Msa0140770 | Msa0779450 | 0.835691 | 1.447847e-56 | -8.615850e-47 |
| Msa0140770 | Msa0795750 | -0.806250 | 9.010823e-50 | -8.615850e-47 |
| Msa0140770 | Msa0796580 | 0.829800 | 4.204091e-55 | -8.615850e-47 |
| Msa0140770 | Msa0800480 | -0.802666 | 5.035092e-49 | -8.615850e-47 |
| Msa0140770 | Msa0803780 | -0.803681 | 3.104384e-49 | -8.615850e-47 |
| Msa0140770 | Msa0823480 | 0.804076 | 2.569141e-49 | -8.615850e-47 |
| Msa0140770 | Msa0827520 | 0.849952 | 2.323454e-60 | -8.615850e-47 |
| Msa0140770 | Msa0833950 | 0.838960 | 2.108477e-57 | -8.615850e-47 |
| Msa0140770 | Msa0841860 | -0.817332 | 3.483345e-52 | -8.615850e-47 |
| Msa0140770 | Msa0862480 | 0.839185 | 1.843154e-57 | -8.615850e-47 |
| Msa0140770 | Msa0870460 | 0.833075 | 6.566176e-56 | -8.615850e-47 |
| Msa0140770 | Msa0881530 | 0.827869 | 1.232852e-54 | -8.615850e-47 |
| Msa0140770 | Msa0919120 | 0.800628 | 1.318278e-48 | -8.615850e-47 |
| Msa0140770 | Msa0982090 | 0.823840 | 1.115417e-53 | -8.615850e-47 |
| Msa0140770 | Msa1004410 | 0.807910 | 4.012365e-50 | -8.615850e-47 |
| Msa0140770 | Msa1021520 | -0.820181 | 7.855448e-53 | -8.615850e-47 |
| Msa0140770 | Msa1039190 | 0.834428 | 3.014581e-56 | -8.615850e-47 |
| Msa0140770 | Msa1039440 | 0.807032 | 6.160812e-50 | -8.615850e-47 |
| Msa0140770 | Msa1039810 | -0.801744 | 7.792311e-49 | -8.615850e-47 |
| Msa0140770 | Msa1085610 | 0.872251 | 3.671768e-67 | -8.615850e-47 |
| Msa0140770 | Msa1087520 | 0.817569 | 3.081050e-52 | -8.615850e-47 |
| Msa0140770 | Msa1089450 | -0.814861 | 1.241693e-51 | -8.615850e-47 |
| Msa0140770 | Msa1123770 | -0.845235 | 4.607606e-59 | -8.615850e-47 |
| Msa0140770 | Msa1128270 | -0.806840 | 6.766925e-50 | -8.615850e-47 |
| Msa0140770 | Msa1128280 | -0.816429 | 5.555378e-52 | -8.615850e-47 |
| Msa0140770 | Msa1128610 | 0.832618 | 8.528974e-56 | -8.615850e-47 |
| Msa0140770 | Msa1129300 | 0.848224 | 7.023260e-60 | -8.615850e-47 |
| Msa0140770 | Msa1143370 | 0.855029 | 8.297364e-62 | -8.615850e-47 |
| Msa0140770 | Msa1143810 | 0.800952 | 1.132237e-48 | -8.615850e-47 |
| Msa0140770 | Msa1150960 | -0.816380 | 5.697257e-52 | -8.615850e-47 |
| Msa0140770 | Msa1165270 | -0.819913 | 9.048345e-53 | -8.615850e-47 |
| Msa0140770 | Msa1169910 | -0.842937 | 1.905782e-58 | -8.615850e-47 |
| Msa0140770 | Msa1175350 | -0.808885 | 2.485766e-50 | -8.615850e-47 |
| Msa0140770 | Msa1190100 | 0.824745 | 6.832609e-54 | -8.615850e-47 |
| Msa0140770 | Msa1209870 | 0.838860 | 2.237266e-57 | -8.615850e-47 |
| Msa0140770 | Msa1210900 | -0.810164 | 1.320383e-50 | -8.615850e-47 |
| Msa0140770 | Msa1225860 | 0.813694 | 2.248782e-51 | -8.615850e-47 |
| Msa0140770 | Msa1258030 | 0.852369 | 4.830109e-61 | -8.615850e-47 |
| Msa0140770 | Msa1259290 | -0.811120 | 8.208475e-51 | -8.615850e-47 |
| Msa0140770 | Msa1273620 | 0.834813 | 2.412529e-56 | -8.615850e-47 |
| Msa0140770 | Msa1275680 | -0.800350 | 1.502189e-48 | -8.615850e-47 |
| Msa0140770 | Msa1277260 | -0.835074 | 2.073288e-56 | -8.615850e-47 |
| Msa0140770 | Msa1285360 | 0.818681 | 1.726535e-52 | -8.615850e-47 |
| Msa0140770 | Msa1311600 | 0.809173 | 2.157157e-50 | -8.615850e-47 |
| Msa0140770 | Msa1315890 | -0.818554 | 1.845154e-52 | -8.615850e-47 |
| Msa0140770 | Msa1329750 | -0.804335 | 2.270093e-49 | -8.615850e-47 |
| Msa0140770 | Msa1330540 | 0.866469 | 2.788135e-65 | -8.615850e-47 |
| Msa0140770 | Msa1340200 | -0.814199 | 1.739397e-51 | -8.615850e-47 |
| Msa0140770 | Msa1341060 | -0.811090 | 8.329116e-51 | -8.615850e-47 |
| Msa0140770 | Msa1342960 | 0.876666 | 1.164257e-68 | -8.615850e-47 |
| Msa0140770 | Msa1348170 | 0.817951 | 2.526869e-52 | -8.615850e-47 |
| Msa0140770 | Msa1356600 | 0.822438 | 2.368825e-53 | -8.615850e-47 |
| Msa0140770 | Msa1361670 | 0.831284 | 1.820999e-55 | -8.615850e-47 |
| Msa0140770 | Msa1364350 | 0.848936 | 4.461005e-60 | -8.615850e-47 |
| Msa0140770 | Msa1372770 | 0.836072 | 1.159557e-56 | -8.615850e-47 |
| Msa0140770 | Msa1375610 | 0.802369 | 5.798030e-49 | -8.615850e-47 |
| Msa0140770 | Msa1375970 | 0.812755 | 3.613497e-51 | -8.615850e-47 |
| Msa0140770 | Msa1376550 | 0.803202 | 3.900670e-49 | -8.615850e-47 |
| Msa0140770 | Msa1382380 | 0.826255 | 2.998474e-54 | -8.615850e-47 |
| Msa0140770 | Msa1383630 | -0.807677 | 4.498119e-50 | -8.615850e-47 |
| Msa0140770 | Msa1385720 | -0.845424 | 4.095903e-59 | -8.615850e-47 |
| Msa0140770 | Msa1388030 | 0.812735 | 3.650385e-51 | -8.615850e-47 |
| Msa0140770 | Msa1389900 | -0.804373 | 2.228398e-49 | -8.615850e-47 |
| Msa0140770 | Msa1398450 | 0.802623 | 5.138559e-49 | -8.615850e-47 |
| Msa0140770 | Msa1431510 | 0.822788 | 1.963826e-53 | -8.615850e-47 |
| Msa0140770 | Msa1433870 | -0.811883 | 5.601184e-51 | -8.615850e-47 |
| Msa0140770 | Msa1434090 | -0.838088 | 3.539339e-57 | -8.615850e-47 |
| Msa0140770 | Msa1435390 | -0.806021 | 1.006970e-49 | -8.615850e-47 |
| Msa0140770 | Msa1445910 | 0.830412 | 2.980688e-55 | -8.615850e-47 |
| Msa0140770 | Msa1457390 | 0.807100 | 5.959961e-50 | -8.615850e-47 |
| Msa0140770 | Msa1464090 | -0.815430 | 9.282560e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140770 | MtrunA17_Chr3g0143911 | 99.797 | 492 | 1 | 0 | 1 | 492 | 1 | 492 | 0.0 | 1028 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140770 | AT4G35090.1 | 87.398 | 492 | 62 | 0 | 1 | 492 | 1 | 492 | 0.0 | 920 |
| Msa0140770 | AT4G35090.3 | 87.090 | 488 | 63 | 0 | 5 | 492 | 5 | 492 | 0.0 | 910 |
| Msa0140770 | AT1G20630.1 | 85.569 | 492 | 71 | 0 | 1 | 492 | 1 | 492 | 0.0 | 895 |
| Msa0140770 | AT4G35090.2 | 87.553 | 474 | 59 | 0 | 1 | 474 | 1 | 474 | 0.0 | 889 |
| Msa0140770 | AT1G20620.1 | 78.455 | 492 | 106 | 0 | 1 | 492 | 1 | 492 | 0.0 | 843 |
| Msa0140770 | AT1G20620.6 | 78.234 | 487 | 106 | 0 | 6 | 492 | 65 | 551 | 0.0 | 833 |
| Msa0140770 | AT1G20620.5 | 77.033 | 492 | 106 | 1 | 1 | 492 | 1 | 485 | 0.0 | 822 |
| Msa0140770 | AT1G20620.2 | 78.282 | 419 | 91 | 0 | 1 | 419 | 1 | 419 | 0.0 | 715 |
| Msa0140770 | AT1G20620.4 | 76.393 | 377 | 89 | 0 | 116 | 492 | 1 | 377 | 0.0 | 637 |
| Msa0140770 | AT1G20620.7 | 77.818 | 275 | 61 | 0 | 116 | 390 | 1 | 275 | 7.34e-167 | 473 |
Find 188 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAGGGTCTCTCAAGGTTTC+AGG | 0.120854 | 1_3:-75070228 | None:intergenic |
| AACATGAGGCCTAGCATTTA+AGG | 0.173184 | 1_3:+75072699 | Msa0140770:CDS |
| GCGCTTACAATTCTCCTTTC+TGG | 0.174679 | 1_3:+75068901 | Msa0140770:CDS |
| GAGAACATGTGAAGACTTTC+TGG | 0.177485 | 1_3:-75070975 | None:intergenic |
| ACTACATCTGACGTTATATT+AGG | 0.208614 | 1_3:+75073041 | Msa0140770:three_prime_UTR |
| ACTTATCAATGCAATCAATT+TGG | 0.222368 | 1_3:-75072992 | None:intergenic |
| GGATCCGTTCCCTATCAAAT+TGG | 0.267128 | 1_3:-75070047 | None:intergenic |
| GTTGGATCCTCCCACCTTAA+TGG | 0.271983 | 1_3:-75071156 | None:intergenic |
| CTTTCCCAGCCTTGTTGATC+AGG | 0.273529 | 1_3:-75071070 | None:intergenic |
| TGTTTGTTTGGATAATTTAA+AGG | 0.280785 | 1_3:+75072782 | Msa0140770:three_prime_UTR |
| TATAGGCACATGGATGGTTT+TGG | 0.286155 | 1_3:+75071032 | Msa0140770:CDS |
| ATTCTCCTGGATGTGGGACT+TGG | 0.295541 | 1_3:-75070922 | None:intergenic |
| CTGGCATGGACAACACGTTC+TGG | 0.317458 | 1_3:-75070069 | None:intergenic |
| TGGATGTGGGACTTGGGGTT+GGG | 0.323157 | 1_3:-75070915 | None:intergenic |
| TTAAGAGCATGGACCATATC+TGG | 0.327136 | 1_3:-75070891 | None:intergenic |
| TTCTCCTGGATGTGGGACTT+GGG | 0.330541 | 1_3:-75070921 | None:intergenic |
| CTGGATGTGGGACTTGGGGT+TGG | 0.333029 | 1_3:-75070916 | None:intergenic |
| TGCTTGAAGTTGTTCTGCTT+TGG | 0.342575 | 1_3:-75072312 | None:intergenic |
| CTCCTTCCTGTTTGATGATG+TGG | 0.344839 | 1_3:+75070995 | Msa0140770:CDS |
| GCGGGAAGTTGCAGATAGTT+TGG | 0.347365 | 1_3:-75071509 | None:intergenic |
| CAGGGTAACTTTGACCTTGT+TGG | 0.356144 | 1_3:+75070825 | Msa0140770:intron |
| CCTTTCTGGACTACAAATTC+CGG | 0.359209 | 1_3:+75068915 | Msa0140770:CDS |
| TTCATTAATTTCTACCTCTC+TGG | 0.360898 | 1_3:-75070274 | None:intergenic |
| TATGATAAAGGATGTTTGTT+TGG | 0.363957 | 1_3:+75072770 | Msa0140770:three_prime_UTR |
| CCCATGAAATCCGCAGCATC+TGG | 0.368012 | 1_3:+75072511 | Msa0140770:CDS |
| CAAATTCCGGTGCACCTGTT+TGG | 0.371503 | 1_3:+75068928 | Msa0140770:CDS |
| ACCCTTTGCACTTGCTCCCC+TGG | 0.372101 | 1_3:-75070088 | None:intergenic |
| CTGGAGAGCGATACCGATCT+TGG | 0.372596 | 1_3:+75072337 | Msa0140770:CDS |
| AAAAGCTTGCCCAATTTGAT+AGG | 0.374612 | 1_3:+75070037 | Msa0140770:CDS |
| AGTCCCACATCCAGGAGAAT+TGG | 0.375895 | 1_3:+75070925 | Msa0140770:CDS |
| CTGTCTTCTTCGTTCATGAC+GGG | 0.379692 | 1_3:+75070859 | Msa0140770:CDS |
| TGATAATCTTCCAAGAGAAT+TGG | 0.382249 | 1_3:-75070006 | None:intergenic |
| TTTGGCAGGTCCAATTCTCT+TGG | 0.391620 | 1_3:+75069996 | Msa0140770:intron |
| TCCAGATGCTGCGGATTTCA+TGG | 0.392167 | 1_3:-75072512 | None:intergenic |
| GTTGGAGGAAGAGGCCATTA+AGG | 0.394703 | 1_3:+75071142 | Msa0140770:CDS |
| TCAAATTTGTCTTCGTGAGC+AGG | 0.405045 | 1_3:-75071263 | None:intergenic |
| CGGTGGAGAAGAAGAAGAAA+TGG | 0.408470 | 1_3:-75068643 | None:intergenic |
| CTACATCTGACGTTATATTA+GGG | 0.413036 | 1_3:+75073042 | Msa0140770:three_prime_UTR |
| TTGCACTTGCTCCCCTGGCA+TGG | 0.415695 | 1_3:-75070083 | None:intergenic |
| TCCTTCCTGTTTGATGATGT+GGG | 0.418017 | 1_3:+75070996 | Msa0140770:CDS |
| GATGAGTTGTTGTTCCAAAC+AGG | 0.420786 | 1_3:-75068942 | None:intergenic |
| TGGGTGTCCCACAAGATTAT+AGG | 0.422410 | 1_3:+75071015 | Msa0140770:CDS |
| CCTTCAGCCCGTAGGTCGCC+TGG | 0.422999 | 1_3:+75071334 | Msa0140770:CDS |
| AATTTCAACATCTGCAACTC+TGG | 0.423648 | 1_3:-75072746 | None:intergenic |
| TGTCCTGCCATTATTGTGCC+TGG | 0.427513 | 1_3:+75071410 | Msa0140770:CDS |
| GTATTGTTGTATACCTTGTA+TGG | 0.430027 | 1_3:-75068704 | None:intergenic |
| GTGATAGTAGAGAGAAAGGA+TGG | 0.430859 | 1_3:-75068670 | None:intergenic |
| CCTGTCTTCTTCGTTCATGA+CGG | 0.433221 | 1_3:+75070858 | Msa0140770:CDS |
| ATTGTTGTGGTGAGCACACT+TGG | 0.434174 | 1_3:-75071540 | None:intergenic |
| GCAGATTTCCTACGAGCTCC+TGG | 0.438797 | 1_3:+75070150 | Msa0140770:CDS |
| AGGTCAATTACTTCCCTTCA+AGG | 0.445115 | 1_3:+75071755 | Msa0140770:intron |
| CTTGGAAGATTATCATCTTG+TGG | 0.451741 | 1_3:+75070014 | Msa0140770:CDS |
| ACCTCTAGATCCAACGGTTA+GGG | 0.454007 | 1_3:-75068964 | None:intergenic |
| GTTGGTGATAGTAGAGAGAA+AGG | 0.457449 | 1_3:-75068674 | None:intergenic |
| ATATACACCAGGCACAATAA+TGG | 0.457625 | 1_3:-75071417 | None:intergenic |
| ATGCAGGCTGATCGTTCTCT+TGG | 0.464966 | 1_3:+75072654 | Msa0140770:intron |
| TTCTCCAATTCTCCTGGATG+TGG | 0.467363 | 1_3:-75070929 | None:intergenic |
| CAAGGATTCTCCAATTCTCC+TGG | 0.469085 | 1_3:-75070935 | None:intergenic |
| CCATGTGCCTATAATCTTGT+GGG | 0.470182 | 1_3:-75071022 | None:intergenic |
| GAGGGTCTCTCAAGGTTTCA+GGG | 0.471242 | 1_3:-75070227 | None:intergenic |
| TTTCTCTGCATGCCGTGAAA+AGG | 0.473118 | 1_3:+75071825 | Msa0140770:CDS |
| TACCTCTAGATCCAACGGTT+AGG | 0.473805 | 1_3:-75068965 | None:intergenic |
| AAGATAGATTTCTCCGCAGA+TGG | 0.473911 | 1_3:+75072460 | Msa0140770:CDS |
| CAAGATCGGTATCGCTCTCC+AGG | 0.473917 | 1_3:-75072336 | None:intergenic |
| CTGGATCTCATACTGGTCTC+AGG | 0.475961 | 1_3:+75072530 | Msa0140770:CDS |
| GTTTCATGAATTTCATTCAC+AGG | 0.477320 | 1_3:+75071573 | Msa0140770:CDS |
| TGGCATGGACAACACGTTCT+GGG | 0.477969 | 1_3:-75070068 | None:intergenic |
| CAGAACGTGTTGTCCATGCC+AGG | 0.477991 | 1_3:+75070070 | Msa0140770:CDS |
| TCCTGTTCGTCATGCAGAAA+AGG | 0.478892 | 1_3:+75071783 | Msa0140770:CDS |
| ATGTTGAAATTGTATGATAA+AGG | 0.480801 | 1_3:+75072758 | Msa0140770:three_prime_UTR |
| CGAACAGGATCATGCCTTGA+AGG | 0.481337 | 1_3:-75071769 | None:intergenic |
| CTATGTTCTTGTTCAAGACC+AGG | 0.484090 | 1_3:-75071352 | None:intergenic |
| GTGTGTGTTATTTATATATG+AGG | 0.485036 | 1_3:+75068565 | Msa0140770:five_prime_UTR |
| CAGAACAACTTCAAGCAGCC+TGG | 0.486042 | 1_3:+75072318 | Msa0140770:CDS |
| GATCCGTTCCCTATCAAATT+GGG | 0.489050 | 1_3:-75070046 | None:intergenic |
| TCTCCTGGATGTGGGACTTG+GGG | 0.492998 | 1_3:-75070920 | None:intergenic |
| TTTCCCAGCCTTGTTGATCA+GGG | 0.494239 | 1_3:-75071069 | None:intergenic |
| GAAAGGAGAATTGTAAGCGC+TGG | 0.495605 | 1_3:-75068898 | None:intergenic |
| TTATATTAGGGAGGAAAGTA+AGG | 0.497358 | 1_3:+75073054 | Msa0140770:three_prime_UTR |
| GTAGGAAATCTGCACAAGTC+AGG | 0.497677 | 1_3:-75070140 | None:intergenic |
| GAGAAATTAGCAGTAGGAAT+GGG | 0.501006 | 1_3:-75071808 | None:intergenic |
| CAGGCGACCTACGGGCTGAA+GGG | 0.503163 | 1_3:-75071333 | None:intergenic |
| GTTCAAGACCAGGCGACCTA+CGG | 0.504173 | 1_3:-75071342 | None:intergenic |
| TGGGGTTGGGTTTAAGAGCA+TGG | 0.506473 | 1_3:-75070902 | None:intergenic |
| CAGCAGCAATTGAATCATAC+AGG | 0.508681 | 1_3:-75071199 | None:intergenic |
| TCGCAACAACCTTAAATGCT+AGG | 0.510006 | 1_3:-75072708 | None:intergenic |
| GGACACCCACATCATCAAAC+AGG | 0.511274 | 1_3:-75071001 | None:intergenic |
| ACCGATCTTGGGCACCCGAC+AGG | 0.511670 | 1_3:+75072349 | Msa0140770:CDS |
| CAGTGTACGTGAAATTTCAC+TGG | 0.512177 | 1_3:+75071093 | Msa0140770:CDS |
| ACCTGTCGGGTGCCCAAGAT+CGG | 0.512897 | 1_3:-75072350 | None:intergenic |
| GCAGCATCTGGATCTCATAC+TGG | 0.513786 | 1_3:+75072523 | Msa0140770:CDS |
| ATGACAGGTGTCTGAACTCC+AGG | 0.514052 | 1_3:-75070168 | None:intergenic |
| TAGAGAGAAAGGATGGAGGA+CGG | 0.516706 | 1_3:-75068663 | None:intergenic |
| GTATACCTTGTATGGATCCA+TGG | 0.516916 | 1_3:-75068696 | None:intergenic |
| TATTCCCTGATCAACAAGGC+TGG | 0.522948 | 1_3:+75071065 | Msa0140770:CDS |
| TTCAAGACCAGGCGACCTAC+GGG | 0.524652 | 1_3:-75071341 | None:intergenic |
| CAAGTCTTAGTTACATCAAG+TGG | 0.525209 | 1_3:-75071293 | None:intergenic |
| TTGAGTAGCATGGCTGTGGT+TGG | 0.529136 | 1_3:-75071174 | None:intergenic |
| GATTCACAGAGGCACAGACT+TGG | 0.529651 | 1_3:+75071485 | Msa0140770:CDS |
| TGGAGAGCGATACCGATCTT+GGG | 0.535088 | 1_3:+75072338 | Msa0140770:CDS |
| CGGATTTCATGGGTGACGCG+TGG | 0.535385 | 1_3:-75072501 | None:intergenic |
| CAACCCCAAGTCCCACATCC+AGG | 0.536425 | 1_3:+75070917 | Msa0140770:CDS |
| AGAGAAATTAGCAGTAGGAA+TGG | 0.536458 | 1_3:-75071809 | None:intergenic |
| AGAGAAAGGATGGAGGACGG+TGG | 0.539677 | 1_3:-75068660 | None:intergenic |
| CCAGGCGACCTACGGGCTGA+AGG | 0.540862 | 1_3:-75071334 | None:intergenic |
| GTAGAGAAACGCACAATGAC+AGG | 0.540987 | 1_3:-75070183 | None:intergenic |
| TCCATGTGCCTATAATCTTG+TGG | 0.541036 | 1_3:-75071023 | None:intergenic |
| CACTTGATGTAACTAAGACT+TGG | 0.542839 | 1_3:+75071294 | Msa0140770:CDS |
| GCACACTTGGGAGCATTAGC+GGG | 0.543955 | 1_3:-75071527 | None:intergenic |
| AGCACACTTGGGAGCATTAG+CGG | 0.545062 | 1_3:-75071528 | None:intergenic |
| CTGTATGATTCAATTGCTGC+TGG | 0.545137 | 1_3:+75071200 | Msa0140770:CDS |
| TGAAGGGGTATAATGTCCTC+AGG | 0.545718 | 1_3:-75071317 | None:intergenic |
| GCCAGGGGAGCAAGTGCAAA+GGG | 0.546598 | 1_3:+75070087 | Msa0140770:CDS |
| AGCTCAACGAGTCACGTACA+TGG | 0.546903 | 1_3:-75072853 | None:intergenic |
| AAAGCTTGCCCAATTTGATA+GGG | 0.548471 | 1_3:+75070038 | Msa0140770:CDS |
| TCTCCAATTCTCCTGGATGT+GGG | 0.550324 | 1_3:-75070928 | None:intergenic |
| TGCCAGGGGAGCAAGTGCAA+AGG | 0.551070 | 1_3:+75070086 | Msa0140770:CDS |
| CCAGATGCTGCGGATTTCAT+GGG | 0.552199 | 1_3:-75072511 | None:intergenic |
| GAAGTGTCTGTTGGAGGAAG+AGG | 0.554768 | 1_3:+75071133 | Msa0140770:CDS |
| CCGTCATGAACGAAGAAGAC+AGG | 0.555643 | 1_3:-75070858 | None:intergenic |
| TTTCATTCACAGGGATGAAG+AGG | 0.555667 | 1_3:+75071583 | Msa0140770:CDS |
| TCCCTAACCGTTGGATCTAG+AGG | 0.556180 | 1_3:+75068963 | Msa0140770:CDS |
| TTGCCCAATTTGATAGGGAA+CGG | 0.556792 | 1_3:+75070043 | Msa0140770:CDS |
| GTTGTTCCAAACAGGTGCAC+CGG | 0.562996 | 1_3:-75068934 | None:intergenic |
| AGGCGACCTACGGGCTGAAG+GGG | 0.563132 | 1_3:-75071332 | None:intergenic |
| AACAACTCATCCCTAACCGT+TGG | 0.569919 | 1_3:+75068954 | Msa0140770:CDS |
| GGAGAATTGTAAGCGCTGGA+TGG | 0.570856 | 1_3:-75068894 | None:intergenic |
| AATTGTAAGCGCTGGATGGA+CGG | 0.572978 | 1_3:-75068890 | None:intergenic |
| ATTCACAGAGGCACAGACTT+GGG | 0.574309 | 1_3:+75071486 | Msa0140770:CDS |
| ATTCCCTGATCAACAAGGCT+GGG | 0.574864 | 1_3:+75071066 | Msa0140770:CDS |
| GAAAGTGAGAAAAGAAGTCA+AGG | 0.576589 | 1_3:-75070953 | None:intergenic |
| CCGGAATTTGTAGTCCAGAA+AGG | 0.579292 | 1_3:-75068915 | None:intergenic |
| GGATTTCATGGGTGACGCGT+GGG | 0.579795 | 1_3:-75072500 | None:intergenic |
| ATGTGGTGTGAAGTGTCTGT+TGG | 0.580105 | 1_3:+75071124 | Msa0140770:CDS |
| GAACAGGATCATGCCTTGAA+GGG | 0.580459 | 1_3:-75071768 | None:intergenic |
| GGAGGAAGAGGCCATTAAGG+TGG | 0.581156 | 1_3:+75071145 | Msa0140770:CDS |
| TTCATGGGTGACGCGTGGGT+CGG | 0.582291 | 1_3:-75072496 | None:intergenic |
| TGAACAAACAGTTTCCACTC+AGG | 0.583241 | 1_3:-75071230 | None:intergenic |
| AGATAGATTTCTCCGCAGAT+GGG | 0.587386 | 1_3:+75072461 | Msa0140770:CDS |
| CAGACACTTCACACCACATG+TGG | 0.589761 | 1_3:-75071120 | None:intergenic |
| CAAGATTATAGGCACATGGA+TGG | 0.589982 | 1_3:+75071026 | Msa0140770:CDS |
| TAGATTTCTCCGCAGATGGG+TGG | 0.591794 | 1_3:+75072464 | Msa0140770:CDS |
| CTCTCTACTATCACCAACCA+TGG | 0.592976 | 1_3:+75068679 | Msa0140770:exon |
| GAGGAAGAGGCCATTAAGGT+GGG | 0.593020 | 1_3:+75071146 | Msa0140770:CDS |
| TTGCATCTCATCTGAACATG+AGG | 0.594906 | 1_3:+75072685 | Msa0140770:CDS |
| CAGGAAAGTTGTTTCCAACA+AGG | 0.596437 | 1_3:-75070839 | None:intergenic |
| GGTCTTGAGTAGCATGGCTG+TGG | 0.596746 | 1_3:-75071178 | None:intergenic |
| CCCACAAGATTATAGGCACA+TGG | 0.598312 | 1_3:+75071022 | Msa0140770:CDS |
| TGGTGTGAAGTGTCTGTTGG+AGG | 0.598470 | 1_3:+75071127 | Msa0140770:CDS |
| AGAACGTGTTGTCCATGCCA+GGG | 0.598996 | 1_3:+75070071 | Msa0140770:CDS |
| TTTCATGAATTTCATTCACA+GGG | 0.601023 | 1_3:+75071574 | Msa0140770:CDS |
| ACCAACCATGGATCCATACA+AGG | 0.601987 | 1_3:+75068691 | Msa0140770:exon |
| GAACGTGTTGTCCATGCCAG+GGG | 0.604058 | 1_3:+75070072 | Msa0140770:CDS |
| ATAGTAGAGAGAAAGGATGG+AGG | 0.605039 | 1_3:-75068667 | None:intergenic |
| ACCTTGTATGGATCCATGGT+TGG | 0.605107 | 1_3:-75068692 | None:intergenic |
| ACACCAGGCACAATAATGGC+AGG | 0.606260 | 1_3:-75071413 | None:intergenic |
| AAAACCTCGAGGGTCTCTCA+AGG | 0.607779 | 1_3:-75070235 | None:intergenic |
| ATGATAAGATGCTTCAAACC+AGG | 0.609656 | 1_3:+75071447 | Msa0140770:CDS |
| CACATATTCCCTGATCAACA+AGG | 0.618103 | 1_3:+75071061 | Msa0140770:CDS |
| ATCAGCATAAGAGAAAATCC+TGG | 0.623303 | 1_3:-75071465 | None:intergenic |
| ATTATACCCCTTCAGCCCGT+AGG | 0.626812 | 1_3:+75071326 | Msa0140770:CDS |
| ATTTCACAGCAAAACCTCGA+GGG | 0.627533 | 1_3:-75070245 | None:intergenic |
| AGATATACCTCTAGATCCAA+CGG | 0.631010 | 1_3:-75068970 | None:intergenic |
| TTGTTGTGGTGAGCACACTT+GGG | 0.632968 | 1_3:-75071539 | None:intergenic |
| CATGCAGAGAAATTAGCAGT+AGG | 0.633318 | 1_3:-75071814 | None:intergenic |
| TGAAATTCATGAAACCCTCA+TGG | 0.640371 | 1_3:-75071565 | None:intergenic |
| TCTGAACTCCAGGAGCTCGT+AGG | 0.643310 | 1_3:-75070158 | None:intergenic |
| TGTGCCTGGTGTATATTACT+CGG | 0.653190 | 1_3:+75071424 | Msa0140770:CDS |
| CATACAGGTCTTGAGTAGCA+TGG | 0.654493 | 1_3:-75071184 | None:intergenic |
| TTTCACTGGAAGCCCACATG+TGG | 0.658894 | 1_3:+75071107 | Msa0140770:CDS |
| AAGTCTTAGTTACATCAAGT+GGG | 0.661737 | 1_3:-75071292 | None:intergenic |
| AACCCTCATGGTGATTGTTG+TGG | 0.663659 | 1_3:-75071553 | None:intergenic |
| CACCACAACAATCACCATGA+GGG | 0.667620 | 1_3:+75071551 | Msa0140770:CDS |
| TCTACTGTCATTCATGAACG+TGG | 0.669221 | 1_3:+75070201 | Msa0140770:CDS |
| CATCTGACGTTATATTAGGG+AGG | 0.672089 | 1_3:+75073045 | Msa0140770:three_prime_UTR |
| ACCCACATCATCAAACAGGA+AGG | 0.673105 | 1_3:-75070997 | None:intergenic |
| ATAAAGCATCCACCCATCTG+CGG | 0.685814 | 1_3:-75072473 | None:intergenic |
| AGTATGAGATCCAGATGCTG+CGG | 0.691680 | 1_3:-75072521 | None:intergenic |
| AATTTCACAGCAAAACCTCG+AGG | 0.694899 | 1_3:-75070246 | None:intergenic |
| CTGCTGGTAACTATCCTGAG+TGG | 0.697296 | 1_3:+75071216 | Msa0140770:CDS |
| AGACACTTCACACCACATGT+GGG | 0.702081 | 1_3:-75071119 | None:intergenic |
| TCATCCGAGTAATATACACC+AGG | 0.707390 | 1_3:-75071428 | None:intergenic |
| GAAGAGGCCATTAAGGTGGG+AGG | 0.707656 | 1_3:+75071149 | Msa0140770:CDS |
| TCTCTTATGCTGATTCACAG+AGG | 0.708120 | 1_3:+75071474 | Msa0140770:CDS |
| TCACCACAACAATCACCATG+AGG | 0.719886 | 1_3:+75071550 | Msa0140770:CDS |
| TGTAACTAAGACTTGGCCTG+AGG | 0.723437 | 1_3:+75071301 | Msa0140770:CDS |
| GAAACCTTGAGAGACCCTCG+AGG | 0.734649 | 1_3:+75070231 | Msa0140770:CDS |
| TGTGAAATTCTACACCAGAG+AGG | 0.748378 | 1_3:+75070260 | Msa0140770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAGAAAAAAGAAAAT+AGG | + | chr1_3:75068521-75068540 | Msa0140770:five_prime_UTR | 10.0% |
| !! | AAAAGAATAATTTAAAGATA+TGG | - | chr1_3:75069052-75069071 | None:intergenic | 10.0% |
| !!! | ACAACATTTTTTTTTAAATA+AGG | - | chr1_3:75071946-75071965 | None:intergenic | 10.0% |
| !! | TCAATAAATAAACAAAACTA+CGG | - | chr1_3:75068802-75068821 | None:intergenic | 15.0% |
| !!! | AATCTATCAATTTGTTTTTT+TGG | + | chr1_3:75068829-75068848 | Msa0140770:intron | 15.0% |
| !!! | TTTAACATAATTTGATTTCT+TGG | + | chr1_3:75069069-75069088 | Msa0140770:intron | 15.0% |
| !! | TGTTAAATTATATGATTTCA+CGG | + | chr1_3:75069109-75069128 | Msa0140770:intron | 15.0% |
| !!! | TGTTTTCATAAACTATAATA+AGG | + | chr1_3:75069462-75069481 | Msa0140770:intron | 15.0% |
| !!! | GTTTTCATAAACTATAATAA+GGG | + | chr1_3:75069463-75069482 | Msa0140770:intron | 15.0% |
| !! | TTTAATTAAATGCTACATTT+GGG | - | chr1_3:75070470-75070489 | None:intergenic | 15.0% |
| !! | TAGCATTTAATTAAACAATT+TGG | + | chr1_3:75070475-75070494 | Msa0140770:intron | 15.0% |
| !!! | TAAGAATATTTCACAAATTT+TGG | - | chr1_3:75071996-75072015 | None:intergenic | 15.0% |
| !! | ATAAGTTGTTTATCCAAATA+TGG | - | chr1_3:75069225-75069244 | None:intergenic | 20.0% |
| !!! | TTATATTATTTTACCCCTTT+TGG | + | chr1_3:75069978-75069997 | Msa0140770:intron | 20.0% |
| !! | TTAATTAAATGCTACATTTG+GGG | - | chr1_3:75070469-75070488 | None:intergenic | 20.0% |
| !! | GTTTAATTAAATGCTACATT+TGG | - | chr1_3:75070471-75070490 | None:intergenic | 20.0% |
| !! | TTAATTAAACAATTTGGTCT+AGG | + | chr1_3:75070481-75070500 | Msa0140770:intron | 20.0% |
| !! | TAATTAAACAATTTGGTCTA+GGG | + | chr1_3:75070482-75070501 | Msa0140770:intron | 20.0% |
| !! | TTGAAATTTCAAAGTACAAA+GGG | - | chr1_3:75070582-75070601 | None:intergenic | 20.0% |
| !!! | TTTGAAATTTCAAAGTACAA+AGG | - | chr1_3:75070583-75070602 | None:intergenic | 20.0% |
| !!! | GACAATAATTGTTTTAAAAG+AGG | + | chr1_3:75070744-75070763 | Msa0140770:intron | 20.0% |
| !! | ATAAGATGTAATATCACATT+TGG | - | chr1_3:75071685-75071704 | None:intergenic | 20.0% |
| !!! | TGCAAATTAATTTGAAGTTT+AGG | + | chr1_3:75072124-75072143 | Msa0140770:intron | 20.0% |
| !! | ATGTTGAAATTGTATGATAA+AGG | + | chr1_3:75072758-75072777 | Msa0140770:three_prime_UTR | 20.0% |
| !! | TGTTTGTTTGGATAATTTAA+AGG | + | chr1_3:75072782-75072801 | Msa0140770:three_prime_UTR | 20.0% |
| !!! | TTGCATTGATAAGTTTTATT+TGG | + | chr1_3:75073001-75073020 | Msa0140770:three_prime_UTR | 20.0% |
| !!! | TTGATAAGTTTTATTTGGTT+AGG | + | chr1_3:75073006-75073025 | Msa0140770:three_prime_UTR | 20.0% |
| ! | AAAATAGGAGAGTGAAAAAA+GGG | + | chr1_3:75068536-75068555 | Msa0140770:five_prime_UTR | 25.0% |
| !!! | GTGTGTGTTATTTATATATG+AGG | + | chr1_3:75068565-75068584 | Msa0140770:five_prime_UTR | 25.0% |
| ! | AAATATGCGCTTATAGTATA+AGG | + | chr1_3:75069199-75069218 | Msa0140770:intron | 25.0% |
| ! | TTATAGTATAAGGCCATATT+TGG | + | chr1_3:75069209-75069228 | Msa0140770:intron | 25.0% |
| ! | TGGTATATGATAGAATACTA+TGG | + | chr1_3:75069367-75069386 | Msa0140770:intron | 25.0% |
| ! | CAGTTATATCAAAAACAGTT+AGG | - | chr1_3:75069601-75069620 | None:intergenic | 25.0% |
| ! | TGATATAACTGAAGCTATAA+TGG | + | chr1_3:75069610-75069629 | Msa0140770:intron | 25.0% |
| ! | GATATAACTGAAGCTATAAT+GGG | + | chr1_3:75069611-75069630 | Msa0140770:intron | 25.0% |
| ! | TGTAAAGTTCAGAGTTAATT+TGG | + | chr1_3:75069923-75069942 | Msa0140770:intron | 25.0% |
| ! | GATTGTGTTGAAACTATTAT+CGG | - | chr1_3:75070415-75070434 | None:intergenic | 25.0% |
| ! | CTGTAATTATATTTAGTCAC+TGG | - | chr1_3:75070646-75070665 | None:intergenic | 25.0% |
| !!! | TTGTTTTAAAAGAGGTGATA+TGG | + | chr1_3:75070752-75070771 | Msa0140770:intron | 25.0% |
| ! | TTTCATGAATTTCATTCACA+GGG | + | chr1_3:75071574-75071593 | Msa0140770:CDS | 25.0% |
| ! | GAAGTAATTGACCTATAAAA+TGG | - | chr1_3:75071749-75071768 | None:intergenic | 25.0% |
| ! | AAAAATCTATGATCTTTCGT+TGG | + | chr1_3:75072029-75072048 | Msa0140770:intron | 25.0% |
| ! | TTAATATTTAACCAAGGTAG+TGG | - | chr1_3:75072099-75072118 | None:intergenic | 25.0% |
| ! | ACCTTGGTTAAATATTAAGT+TGG | + | chr1_3:75072101-75072120 | Msa0140770:intron | 25.0% |
| ! | ACCAACTTAATATTTAACCA+AGG | - | chr1_3:75072105-75072124 | None:intergenic | 25.0% |
| ! | TATAAAATAAATGACGAGTG+AGG | + | chr1_3:75072196-75072215 | Msa0140770:intron | 25.0% |
| ! | TATTGTTTAAACAGCTTTAC+TGG | - | chr1_3:75072237-75072256 | None:intergenic | 25.0% |
| ! | TGTTTAAACAATACCTGTAT+TGG | + | chr1_3:75072244-75072263 | Msa0140770:intron | 25.0% |
| ! | GTTTAAACAATACCTGTATT+GGG | + | chr1_3:75072245-75072264 | Msa0140770:intron | 25.0% |
| ! | TTTAAACAATACCTGTATTG+GGG | + | chr1_3:75072246-75072265 | Msa0140770:intron | 25.0% |
| !! | TCATATCAGTATTTTGTAAC+AGG | - | chr1_3:75072377-75072396 | None:intergenic | 25.0% |
| ! | TATGATAAAGGATGTTTGTT+TGG | + | chr1_3:75072770-75072789 | Msa0140770:three_prime_UTR | 25.0% |
| ! | ACTTATCAATGCAATCAATT+TGG | - | chr1_3:75072995-75073014 | None:intergenic | 25.0% |
| !!! | ATAAGTTTTATTTGGTTAGG+AGG | + | chr1_3:75073009-75073028 | Msa0140770:three_prime_UTR | 25.0% |
| GAAAATAGGAGAGTGAAAAA+AGG | + | chr1_3:75068535-75068554 | Msa0140770:five_prime_UTR | 30.0% | |
| AAATAGGAGAGTGAAAAAAG+GGG | + | chr1_3:75068537-75068556 | Msa0140770:five_prime_UTR | 30.0% | |
| GTATTGTTGTATACCTTGTA+TGG | - | chr1_3:75068707-75068726 | None:intergenic | 30.0% | |
| TGGATGTCATAACATTAAAC+TGG | - | chr1_3:75069147-75069166 | None:intergenic | 30.0% | |
| ! | GACATGTTATCTGTTTTCAT+AGG | + | chr1_3:75069520-75069539 | Msa0140770:intron | 30.0% |
| !! | TCGTACATGTGATACTTTTT+AGG | - | chr1_3:75069550-75069569 | None:intergenic | 30.0% |
| ATGTTATTATGAGCAGCTTA+TGG | + | chr1_3:75069672-75069691 | Msa0140770:intron | 30.0% | |
| AAGTTATGATATGTCACAAC+TGG | - | chr1_3:75069712-75069731 | None:intergenic | 30.0% | |
| GGCGTGGTTTATATAAAAAT+TGG | - | chr1_3:75069813-75069832 | None:intergenic | 30.0% | |
| TCGTAATTAGTTATCACCAT+TGG | + | chr1_3:75069864-75069883 | Msa0140770:intron | 30.0% | |
| TGATAATCTTCCAAGAGAAT+TGG | - | chr1_3:75070009-75070028 | None:intergenic | 30.0% | |
| TTCATTAATTTCTACCTCTC+TGG | - | chr1_3:75070277-75070296 | None:intergenic | 30.0% | |
| !!! | GTGTTGTCTTCAATTTTTTC+AGG | - | chr1_3:75070525-75070544 | None:intergenic | 30.0% |
| TATCTTTACCTTCTAATCAC+AGG | + | chr1_3:75070806-75070825 | Msa0140770:intron | 30.0% | |
| ATCTTTACCTTCTAATCACA+GGG | + | chr1_3:75070807-75070826 | Msa0140770:intron | 30.0% | |
| AAGTCTTAGTTACATCAAGT+GGG | - | chr1_3:75071295-75071314 | None:intergenic | 30.0% | |
| GTTTCATGAATTTCATTCAC+AGG | + | chr1_3:75071573-75071592 | Msa0140770:CDS | 30.0% | |
| ! | TATCACATTTGGAGTTATCA+TGG | - | chr1_3:75071674-75071693 | None:intergenic | 30.0% |
| ! | AATCGAAACTAACCTTTTCA+CGG | - | chr1_3:75071840-75071859 | None:intergenic | 30.0% |
| GCAATCAATCGTAAAAATCA+CGG | - | chr1_3:75071919-75071938 | None:intergenic | 30.0% | |
| !! | TTGGTTGTTTCTAAAATGTG+TGG | - | chr1_3:75071977-75071996 | None:intergenic | 30.0% |
| TGATCAACATGAATTGTGTT+TGG | + | chr1_3:75072394-75072413 | Msa0140770:intron | 30.0% | |
| !! | GTTTGGTGATGTCTAATATT+TGG | + | chr1_3:75072411-75072430 | Msa0140770:intron | 30.0% |
| ! | TTCTTTGCCTTAATCTTTTC+AGG | + | chr1_3:75072436-75072455 | Msa0140770:intron | 30.0% |
| TATCTTGCCTGAAAAGATTA+AGG | - | chr1_3:75072446-75072465 | None:intergenic | 30.0% | |
| AGCATATGAGCAAATAAGTA+GGG | - | chr1_3:75072618-75072637 | None:intergenic | 30.0% | |
| ACTACATCTGACGTTATATT+AGG | + | chr1_3:75073041-75073060 | Msa0140770:three_prime_UTR | 30.0% | |
| CTACATCTGACGTTATATTA+GGG | + | chr1_3:75073042-75073061 | Msa0140770:three_prime_UTR | 30.0% | |
| TTATATTAGGGAGGAAAGTA+AGG | + | chr1_3:75073054-75073073 | Msa0140770:three_prime_UTR | 30.0% | |
| AGATATACCTCTAGATCCAA+CGG | - | chr1_3:75068973-75068992 | None:intergenic | 35.0% | |
| CGATTTAGAGATCAATGAGT+TGG | + | chr1_3:75069347-75069366 | Msa0140770:intron | 35.0% | |
| AATAAGCTGAAAACAGCTCA+TGG | + | chr1_3:75069498-75069517 | Msa0140770:intron | 35.0% | |
| GCCACATTTAGTTGAGTATT+GGG | + | chr1_3:75069830-75069849 | Msa0140770:intron | 35.0% | |
| ! | CCACATTTAGTTGAGTATTG+GGG | + | chr1_3:75069831-75069850 | Msa0140770:intron | 35.0% |
| ! | CACCATTGGTAATTACAACT+TGG | + | chr1_3:75069878-75069897 | Msa0140770:intron | 35.0% |
| TGAACTTTACAACAGACAGA+TGG | - | chr1_3:75069914-75069933 | None:intergenic | 35.0% | |
| !! | ATTATTTTACCCCTTTTGGC+AGG | + | chr1_3:75069982-75070001 | Msa0140770:intron | 35.0% |
| CTTGGAAGATTATCATCTTG+TGG | + | chr1_3:75070014-75070033 | Msa0140770:CDS | 35.0% | |
| AAAAGCTTGCCCAATTTGAT+AGG | + | chr1_3:75070037-75070056 | Msa0140770:CDS | 35.0% | |
| AAAGCTTGCCCAATTTGATA+GGG | + | chr1_3:75070038-75070057 | Msa0140770:CDS | 35.0% | |
| TATTTAGTCGCTGGAAGATA+TGG | - | chr1_3:75070322-75070341 | None:intergenic | 35.0% | |
| TTAACCAACTCCAGTTTAGT+TGG | + | chr1_3:75070382-75070401 | Msa0140770:intron | 35.0% | |
| TTTACCAACTAAACTGGAGT+TGG | - | chr1_3:75070389-75070408 | None:intergenic | 35.0% | |
| AACAATTTGGTCTAGGGATT+TGG | + | chr1_3:75070488-75070507 | Msa0140770:intron | 35.0% | |
| AAAGTTACCCTGTGATTAGA+AGG | - | chr1_3:75070817-75070836 | None:intergenic | 35.0% | |
| GAAAGTGAGAAAAGAAGTCA+AGG | - | chr1_3:75070956-75070975 | None:intergenic | 35.0% | |
| CAAGTCTTAGTTACATCAAG+TGG | - | chr1_3:75071296-75071315 | None:intergenic | 35.0% | |
| CACTTGATGTAACTAAGACT+TGG | + | chr1_3:75071294-75071313 | Msa0140770:CDS | 35.0% | |
| ATATACACCAGGCACAATAA+TGG | - | chr1_3:75071420-75071439 | None:intergenic | 35.0% | |
| ATGATAAGATGCTTCAAACC+AGG | + | chr1_3:75071447-75071466 | Msa0140770:CDS | 35.0% | |
| ATCAGCATAAGAGAAAATCC+TGG | - | chr1_3:75071468-75071487 | None:intergenic | 35.0% | |
| TGAAATTCATGAAACCCTCA+TGG | - | chr1_3:75071568-75071587 | None:intergenic | 35.0% | |
| GAGAAATTAGCAGTAGGAAT+GGG | - | chr1_3:75071811-75071830 | None:intergenic | 35.0% | |
| AGAGAAATTAGCAGTAGGAA+TGG | - | chr1_3:75071812-75071831 | None:intergenic | 35.0% | |
| TGACAAAGAAGCAGAGAAAT+AGG | + | chr1_3:75072072-75072091 | Msa0140770:intron | 35.0% | |
| ! | ATTTTGTAACAGGAACCTGT+CGG | - | chr1_3:75072367-75072386 | None:intergenic | 35.0% |
| GAGCATATGAGCAAATAAGT+AGG | - | chr1_3:75072619-75072638 | None:intergenic | 35.0% | |
| TTTGCTCATATGCTCTTTGT+TGG | + | chr1_3:75072624-75072643 | Msa0140770:intron | 35.0% | |
| !!! | CTTTGTTGGTTTTACTATGC+AGG | + | chr1_3:75072638-75072657 | Msa0140770:intron | 35.0% |
| AATTTCAACATCTGCAACTC+TGG | - | chr1_3:75072749-75072768 | None:intergenic | 35.0% | |
| ATAGTAGAGAGAAAGGATGG+AGG | - | chr1_3:75068670-75068689 | None:intergenic | 40.0% | |
| GTGATAGTAGAGAGAAAGGA+TGG | - | chr1_3:75068673-75068692 | None:intergenic | 40.0% | |
| !! | GTTGGTGATAGTAGAGAGAA+AGG | - | chr1_3:75068677-75068696 | None:intergenic | 40.0% |
| GTATACCTTGTATGGATCCA+TGG | - | chr1_3:75068699-75068718 | None:intergenic | 40.0% | |
| CCTTTCTGGACTACAAATTC+CGG | + | chr1_3:75068915-75068934 | Msa0140770:CDS | 40.0% | |
| ! | GATGAGTTGTTGTTCCAAAC+AGG | - | chr1_3:75068945-75068964 | None:intergenic | 40.0% |
| GACATCCATGCATGTGATTA+AGG | + | chr1_3:75069159-75069178 | Msa0140770:intron | 40.0% | |
| AAGAGCCTTAATCACATGCA+TGG | - | chr1_3:75069167-75069186 | None:intergenic | 40.0% | |
| TCAACTAAGCCTACACAAAC+AGG | + | chr1_3:75069575-75069594 | Msa0140770:intron | 40.0% | |
| AGCAATTGAGAGGGTTTACT+TGG | - | chr1_3:75069763-75069782 | None:intergenic | 40.0% | |
| ATACTCAACTAAATGTGGCG+TGG | - | chr1_3:75069829-75069848 | None:intergenic | 40.0% | |
| CGCCACATTTAGTTGAGTAT+TGG | + | chr1_3:75069829-75069848 | Msa0140770:intron | 40.0% | |
| CCCCAATACTCAACTAAATG+TGG | - | chr1_3:75069834-75069853 | None:intergenic | 40.0% | |
| CGCCAAGTTGTAATTACCAA+TGG | - | chr1_3:75069883-75069902 | None:intergenic | 40.0% | |
| TTGCCCAATTTGATAGGGAA+CGG | + | chr1_3:75070043-75070062 | Msa0140770:CDS | 40.0% | |
| GATCCGTTCCCTATCAAATT+GGG | - | chr1_3:75070049-75070068 | None:intergenic | 40.0% | |
| TCTACTGTCATTCATGAACG+TGG | + | chr1_3:75070201-75070220 | Msa0140770:CDS | 40.0% | |
| ATTTCACAGCAAAACCTCGA+GGG | - | chr1_3:75070248-75070267 | None:intergenic | 40.0% | |
| AATTTCACAGCAAAACCTCG+AGG | - | chr1_3:75070249-75070268 | None:intergenic | 40.0% | |
| TGTGAAATTCTACACCAGAG+AGG | + | chr1_3:75070260-75070279 | Msa0140770:CDS | 40.0% | |
| ! | CGGCATTTTACCAACTAAAC+TGG | - | chr1_3:75070395-75070414 | None:intergenic | 40.0% |
| GAAGACAACACATGCATTGT+TGG | + | chr1_3:75070534-75070553 | Msa0140770:intron | 40.0% | |
| ACAAAGGGTTTAGACAATGC+TGG | - | chr1_3:75070567-75070586 | None:intergenic | 40.0% | |
| AAGTAGTTGCAGTTGTAACC+AGG | + | chr1_3:75070697-75070716 | Msa0140770:intron | 40.0% | |
| AAGCAAATACACAAGCATCC+TGG | - | chr1_3:75070718-75070737 | None:intergenic | 40.0% | |
| AAGAGGTGATATGGAACAGT+TGG | + | chr1_3:75070761-75070780 | Msa0140770:intron | 40.0% | |
| ! | CAGGAAAGTTGTTTCCAACA+AGG | - | chr1_3:75070842-75070861 | None:intergenic | 40.0% |
| ! | CGGGATGAATTTTCCAGATA+TGG | + | chr1_3:75070878-75070897 | Msa0140770:CDS | 40.0% |
| ! | TTAAGAGCATGGACCATATC+TGG | - | chr1_3:75070894-75070913 | None:intergenic | 40.0% |
| GAGAACATGTGAAGACTTTC+TGG | - | chr1_3:75070978-75070997 | None:intergenic | 40.0% | |
| !! | TCCTTCCTGTTTGATGATGT+GGG | + | chr1_3:75070996-75071015 | Msa0140770:CDS | 40.0% |
| CCATGTGCCTATAATCTTGT+GGG | - | chr1_3:75071025-75071044 | None:intergenic | 40.0% | |
| TCCATGTGCCTATAATCTTG+TGG | - | chr1_3:75071026-75071045 | None:intergenic | 40.0% | |
| CAAGATTATAGGCACATGGA+TGG | + | chr1_3:75071026-75071045 | Msa0140770:CDS | 40.0% | |
| ! | TATAGGCACATGGATGGTTT+TGG | + | chr1_3:75071032-75071051 | Msa0140770:CDS | 40.0% |
| CACATATTCCCTGATCAACA+AGG | + | chr1_3:75071061-75071080 | Msa0140770:CDS | 40.0% | |
| CAGTGTACGTGAAATTTCAC+TGG | + | chr1_3:75071093-75071112 | Msa0140770:CDS | 40.0% | |
| CAGCAGCAATTGAATCATAC+AGG | - | chr1_3:75071202-75071221 | None:intergenic | 40.0% | |
| CTGTATGATTCAATTGCTGC+TGG | + | chr1_3:75071200-75071219 | Msa0140770:CDS | 40.0% | |
| TGAACAAACAGTTTCCACTC+AGG | - | chr1_3:75071233-75071252 | None:intergenic | 40.0% | |
| TCAAATTTGTCTTCGTGAGC+AGG | - | chr1_3:75071266-75071285 | None:intergenic | 40.0% | |
| CTATGTTCTTGTTCAAGACC+AGG | - | chr1_3:75071355-75071374 | None:intergenic | 40.0% | |
| TGTGCCTGGTGTATATTACT+CGG | + | chr1_3:75071424-75071443 | Msa0140770:CDS | 40.0% | |
| TCATCCGAGTAATATACACC+AGG | - | chr1_3:75071431-75071450 | None:intergenic | 40.0% | |
| !! | TCTCTTATGCTGATTCACAG+AGG | + | chr1_3:75071474-75071493 | Msa0140770:CDS | 40.0% |
| TTTCATTCACAGGGATGAAG+AGG | + | chr1_3:75071583-75071602 | Msa0140770:CDS | 40.0% | |
| !!! | CTTGAGCTCTGCCATTTTAT+AGG | + | chr1_3:75071735-75071754 | Msa0140770:intron | 40.0% |
| AGGTCAATTACTTCCCTTCA+AGG | + | chr1_3:75071755-75071774 | Msa0140770:intron | 40.0% | |
| CATGCAGAGAAATTAGCAGT+AGG | - | chr1_3:75071817-75071836 | None:intergenic | 40.0% | |
| ATCGTAAAAATCACGGCTGA+TGG | - | chr1_3:75071912-75071931 | None:intergenic | 40.0% | |
| CATACATTCTTCCCCAATAC+AGG | - | chr1_3:75072260-75072279 | None:intergenic | 40.0% | |
| TGCTTGAAGTTGTTCTGCTT+TGG | - | chr1_3:75072315-75072334 | None:intergenic | 40.0% | |
| ! | TTTTGTAACAGGAACCTGTC+GGG | - | chr1_3:75072366-75072385 | None:intergenic | 40.0% |
| AAGATAGATTTCTCCGCAGA+TGG | + | chr1_3:75072460-75072479 | Msa0140770:CDS | 40.0% | |
| AGATAGATTTCTCCGCAGAT+GGG | + | chr1_3:75072461-75072480 | Msa0140770:CDS | 40.0% | |
| TTGCATCTCATCTGAACATG+AGG | + | chr1_3:75072685-75072704 | Msa0140770:CDS | 40.0% | |
| AACATGAGGCCTAGCATTTA+AGG | + | chr1_3:75072699-75072718 | Msa0140770:CDS | 40.0% | |
| TCGCAACAACCTTAAATGCT+AGG | - | chr1_3:75072711-75072730 | None:intergenic | 40.0% | |
| CATCTGACGTTATATTAGGG+AGG | + | chr1_3:75073045-75073064 | Msa0140770:three_prime_UTR | 40.0% | |
| CGGTGGAGAAGAAGAAGAAA+TGG | - | chr1_3:75068646-75068665 | None:intergenic | 45.0% | |
| TAGAGAGAAAGGATGGAGGA+CGG | - | chr1_3:75068666-75068685 | None:intergenic | 45.0% | |
| CTCTCTACTATCACCAACCA+TGG | + | chr1_3:75068679-75068698 | Msa0140770:exon | 45.0% | |
| ACCAACCATGGATCCATACA+AGG | + | chr1_3:75068691-75068710 | Msa0140770:exon | 45.0% | |
| ACCTTGTATGGATCCATGGT+TGG | - | chr1_3:75068695-75068714 | None:intergenic | 45.0% | |
| !! | AATTGTAAGCGCTGGATGGA+CGG | - | chr1_3:75068893-75068912 | None:intergenic | 45.0% |
| GAAAGGAGAATTGTAAGCGC+TGG | - | chr1_3:75068901-75068920 | None:intergenic | 45.0% | |
| GCGCTTACAATTCTCCTTTC+TGG | + | chr1_3:75068901-75068920 | Msa0140770:CDS | 45.0% | |
| CCGGAATTTGTAGTCCAGAA+AGG | - | chr1_3:75068918-75068937 | None:intergenic | 45.0% | |
| AACAACTCATCCCTAACCGT+TGG | + | chr1_3:75068954-75068973 | Msa0140770:CDS | 45.0% | |
| ACCTCTAGATCCAACGGTTA+GGG | - | chr1_3:75068967-75068986 | None:intergenic | 45.0% | |
| TACCTCTAGATCCAACGGTT+AGG | - | chr1_3:75068968-75068987 | None:intergenic | 45.0% | |
| CTTATCCCACTATGTGGAGT+CGG | - | chr1_3:75069412-75069431 | None:intergenic | 45.0% | |
| ! | ATAGTGGGATAAGGCTTGGT+TGG | + | chr1_3:75069419-75069438 | Msa0140770:intron | 45.0% |
| ACAGTTAGGCCTGTTTGTGT+AGG | - | chr1_3:75069587-75069606 | None:intergenic | 45.0% | |
| CACACATGCAGCAATTGAGA+GGG | - | chr1_3:75069772-75069791 | None:intergenic | 45.0% | |
| AGAATTGGACCTGCCAAAAG+GGG | - | chr1_3:75069994-75070013 | None:intergenic | 45.0% | |
| GAGAATTGGACCTGCCAAAA+GGG | - | chr1_3:75069995-75070014 | None:intergenic | 45.0% | |
| AGAGAATTGGACCTGCCAAA+AGG | - | chr1_3:75069996-75070015 | None:intergenic | 45.0% | |
| TTTGGCAGGTCCAATTCTCT+TGG | + | chr1_3:75069996-75070015 | Msa0140770:intron | 45.0% | |
| GGATCCGTTCCCTATCAAAT+TGG | - | chr1_3:75070050-75070069 | None:intergenic | 45.0% | |
| GTAGGAAATCTGCACAAGTC+AGG | - | chr1_3:75070143-75070162 | None:intergenic | 45.0% | |
| GTAGAGAAACGCACAATGAC+AGG | - | chr1_3:75070186-75070205 | None:intergenic | 45.0% | |
| CAGTAGCTGTATTTAGTCGC+TGG | - | chr1_3:75070331-75070350 | None:intergenic | 45.0% | |
| CAGGGTAACTTTGACCTTGT+TGG | + | chr1_3:75070825-75070844 | Msa0140770:intron | 45.0% | |
| CCTGTCTTCTTCGTTCATGA+CGG | + | chr1_3:75070858-75070877 | Msa0140770:CDS | 45.0% | |
| CTGTCTTCTTCGTTCATGAC+GGG | + | chr1_3:75070859-75070878 | Msa0140770:CDS | 45.0% | |
| TCTCCAATTCTCCTGGATGT+GGG | - | chr1_3:75070931-75070950 | None:intergenic | 45.0% | |
| TTCTCCAATTCTCCTGGATG+TGG | - | chr1_3:75070932-75070951 | None:intergenic | 45.0% | |
| CAAGGATTCTCCAATTCTCC+TGG | - | chr1_3:75070938-75070957 | None:intergenic | 45.0% | |
| !! | CTCCTTCCTGTTTGATGATG+TGG | + | chr1_3:75070995-75071014 | Msa0140770:CDS | 45.0% |
| ACCCACATCATCAAACAGGA+AGG | - | chr1_3:75071000-75071019 | None:intergenic | 45.0% | |
| TGGGTGTCCCACAAGATTAT+AGG | + | chr1_3:75071015-75071034 | Msa0140770:CDS | 45.0% | |
| CCCACAAGATTATAGGCACA+TGG | + | chr1_3:75071022-75071041 | Msa0140770:CDS | 45.0% | |
| TATTCCCTGATCAACAAGGC+TGG | + | chr1_3:75071065-75071084 | Msa0140770:CDS | 45.0% | |
| ATTCCCTGATCAACAAGGCT+GGG | + | chr1_3:75071066-75071085 | Msa0140770:CDS | 45.0% | |
| !! | TTTCCCAGCCTTGTTGATCA+GGG | - | chr1_3:75071072-75071091 | None:intergenic | 45.0% |
| AGACACTTCACACCACATGT+GGG | - | chr1_3:75071122-75071141 | None:intergenic | 45.0% | |
| ! | ATGTGGTGTGAAGTGTCTGT+TGG | + | chr1_3:75071124-75071143 | Msa0140770:CDS | 45.0% |
| CATACAGGTCTTGAGTAGCA+TGG | - | chr1_3:75071187-75071206 | None:intergenic | 45.0% | |
| TGTAACTAAGACTTGGCCTG+AGG | + | chr1_3:75071301-75071320 | Msa0140770:CDS | 45.0% | |
| ! | TGAAGGGGTATAATGTCCTC+AGG | - | chr1_3:75071320-75071339 | None:intergenic | 45.0% |
| ! | ATTCACAGAGGCACAGACTT+GGG | + | chr1_3:75071486-75071505 | Msa0140770:CDS | 45.0% |
| TTGTTGTGGTGAGCACACTT+GGG | - | chr1_3:75071542-75071561 | None:intergenic | 45.0% | |
| ATTGTTGTGGTGAGCACACT+TGG | - | chr1_3:75071543-75071562 | None:intergenic | 45.0% | |
| TCACCACAACAATCACCATG+AGG | + | chr1_3:75071550-75071569 | Msa0140770:CDS | 45.0% | |
| CACCACAACAATCACCATGA+GGG | + | chr1_3:75071551-75071570 | Msa0140770:CDS | 45.0% | |
| AACCCTCATGGTGATTGTTG+TGG | - | chr1_3:75071556-75071575 | None:intergenic | 45.0% | |
| GAACAGGATCATGCCTTGAA+GGG | - | chr1_3:75071771-75071790 | None:intergenic | 45.0% | |
| TCCTGTTCGTCATGCAGAAA+AGG | + | chr1_3:75071783-75071802 | Msa0140770:CDS | 45.0% | |
| ! | ACCTTTTCTGCATGACGAAC+AGG | - | chr1_3:75071787-75071806 | None:intergenic | 45.0% |
| TTTCTCTGCATGCCGTGAAA+AGG | + | chr1_3:75071825-75071844 | Msa0140770:CDS | 45.0% | |
| GAGAAATAGGTCCACTACCT+TGG | + | chr1_3:75072085-75072104 | Msa0140770:intron | 45.0% | |
| ! | ATAAAGCATCCACCCATCTG+CGG | - | chr1_3:75072476-75072495 | None:intergenic | 45.0% |
| AGTATGAGATCCAGATGCTG+CGG | - | chr1_3:75072524-75072543 | None:intergenic | 45.0% | |
| !! | GGAGAATTGTAAGCGCTGGA+TGG | - | chr1_3:75068897-75068916 | None:intergenic | 50.0% |
| CAAATTCCGGTGCACCTGTT+TGG | + | chr1_3:75068928-75068947 | Msa0140770:CDS | 50.0% | |
| GTTGTTCCAAACAGGTGCAC+CGG | - | chr1_3:75068937-75068956 | None:intergenic | 50.0% | |
| TCCCTAACCGTTGGATCTAG+AGG | + | chr1_3:75068963-75068982 | Msa0140770:CDS | 50.0% | |
| ACTATGTGGAGTCGGCTACA+TGG | - | chr1_3:75069404-75069423 | None:intergenic | 50.0% | |
| ! | ATGTAGCCGACTCCACATAG+TGG | + | chr1_3:75069403-75069422 | Msa0140770:intron | 50.0% |
| ! | TGTAGCCGACTCCACATAGT+GGG | + | chr1_3:75069404-75069423 | Msa0140770:intron | 50.0% |
| ! | CGACTCCACATAGTGGGATA+AGG | + | chr1_3:75069410-75069429 | Msa0140770:intron | 50.0% |
| ! | CCAAGCCTTATCCCACTATG+TGG | - | chr1_3:75069418-75069437 | None:intergenic | 50.0% |
| ! | CCACATAGTGGGATAAGGCT+TGG | + | chr1_3:75069415-75069434 | Msa0140770:intron | 50.0% |
| GCACACATGCAGCAATTGAG+AGG | - | chr1_3:75069773-75069792 | None:intergenic | 50.0% | |
| TGGCATGGACAACACGTTCT+GGG | - | chr1_3:75070071-75070090 | None:intergenic | 50.0% | |
| AGAACGTGTTGTCCATGCCA+GGG | + | chr1_3:75070071-75070090 | Msa0140770:CDS | 50.0% | |
| ATGACAGGTGTCTGAACTCC+AGG | - | chr1_3:75070171-75070190 | None:intergenic | 50.0% | |
| GAGGGTCTCTCAAGGTTTCA+GGG | - | chr1_3:75070230-75070249 | None:intergenic | 50.0% | |
| AAAACCTCGAGGGTCTCTCA+AGG | - | chr1_3:75070238-75070257 | None:intergenic | 50.0% | |
| CCGTCATGAACGAAGAAGAC+AGG | - | chr1_3:75070861-75070880 | None:intergenic | 50.0% | |
| TGGGGTTGGGTTTAAGAGCA+TGG | - | chr1_3:75070905-75070924 | None:intergenic | 50.0% | |
| TTCTCCTGGATGTGGGACTT+GGG | - | chr1_3:75070924-75070943 | None:intergenic | 50.0% | |
| ATTCTCCTGGATGTGGGACT+TGG | - | chr1_3:75070925-75070944 | None:intergenic | 50.0% | |
| AGTCCCACATCCAGGAGAAT+TGG | + | chr1_3:75070925-75070944 | Msa0140770:CDS | 50.0% | |
| GGACACCCACATCATCAAAC+AGG | - | chr1_3:75071004-75071023 | None:intergenic | 50.0% | |
| !! | CTTTCCCAGCCTTGTTGATC+AGG | - | chr1_3:75071073-75071092 | None:intergenic | 50.0% |
| TTTCACTGGAAGCCCACATG+TGG | + | chr1_3:75071107-75071126 | Msa0140770:CDS | 50.0% | |
| CAGACACTTCACACCACATG+TGG | - | chr1_3:75071123-75071142 | None:intergenic | 50.0% | |
| ! | TGGTGTGAAGTGTCTGTTGG+AGG | + | chr1_3:75071127-75071146 | Msa0140770:CDS | 50.0% |
| ! | GAAGTGTCTGTTGGAGGAAG+AGG | + | chr1_3:75071133-75071152 | Msa0140770:CDS | 50.0% |
| GTTGGAGGAAGAGGCCATTA+AGG | + | chr1_3:75071142-75071161 | Msa0140770:CDS | 50.0% | |
| GAGGAAGAGGCCATTAAGGT+GGG | + | chr1_3:75071146-75071165 | Msa0140770:CDS | 50.0% | |
| GTTGGATCCTCCCACCTTAA+TGG | - | chr1_3:75071159-75071178 | None:intergenic | 50.0% | |
| TTGAGTAGCATGGCTGTGGT+TGG | - | chr1_3:75071177-75071196 | None:intergenic | 50.0% | |
| CTGCTGGTAACTATCCTGAG+TGG | + | chr1_3:75071216-75071235 | Msa0140770:CDS | 50.0% | |
| ATTATACCCCTTCAGCCCGT+AGG | + | chr1_3:75071326-75071345 | Msa0140770:CDS | 50.0% | |
| TGTCCTGCCATTATTGTGCC+TGG | + | chr1_3:75071410-75071429 | Msa0140770:CDS | 50.0% | |
| ACACCAGGCACAATAATGGC+AGG | - | chr1_3:75071416-75071435 | None:intergenic | 50.0% | |
| ! | GATTCACAGAGGCACAGACT+TGG | + | chr1_3:75071485-75071504 | Msa0140770:CDS | 50.0% |
| GCGGGAAGTTGCAGATAGTT+TGG | - | chr1_3:75071512-75071531 | None:intergenic | 50.0% | |
| !! | AGCACACTTGGGAGCATTAG+CGG | - | chr1_3:75071531-75071550 | None:intergenic | 50.0% |
| CGAACAGGATCATGCCTTGA+AGG | - | chr1_3:75071772-75071791 | None:intergenic | 50.0% | |
| CAGAACAACTTCAAGCAGCC+TGG | + | chr1_3:75072318-75072337 | Msa0140770:CDS | 50.0% | |
| TGGAGAGCGATACCGATCTT+GGG | + | chr1_3:75072338-75072357 | Msa0140770:CDS | 50.0% | |
| TAGATTTCTCCGCAGATGGG+TGG | + | chr1_3:75072464-75072483 | Msa0140770:CDS | 50.0% | |
| CCAGATGCTGCGGATTTCAT+GGG | - | chr1_3:75072514-75072533 | None:intergenic | 50.0% | |
| TCCAGATGCTGCGGATTTCA+TGG | - | chr1_3:75072515-75072534 | None:intergenic | 50.0% | |
| GCAGCATCTGGATCTCATAC+TGG | + | chr1_3:75072523-75072542 | Msa0140770:CDS | 50.0% | |
| ! | CTGGATCTCATACTGGTCTC+AGG | + | chr1_3:75072530-75072549 | Msa0140770:CDS | 50.0% |
| ATGCAGGCTGATCGTTCTCT+TGG | + | chr1_3:75072654-75072673 | Msa0140770:intron | 50.0% | |
| AGCTCAACGAGTCACGTACA+TGG | - | chr1_3:75072856-75072875 | None:intergenic | 50.0% | |
| AGAGAAAGGATGGAGGACGG+TGG | - | chr1_3:75068663-75068682 | None:intergenic | 55.0% | |
| CTGGCATGGACAACACGTTC+TGG | - | chr1_3:75070072-75070091 | None:intergenic | 55.0% | |
| CAGAACGTGTTGTCCATGCC+AGG | + | chr1_3:75070070-75070089 | Msa0140770:CDS | 55.0% | |
| GAACGTGTTGTCCATGCCAG+GGG | + | chr1_3:75070072-75070091 | Msa0140770:CDS | 55.0% | |
| GCAGATTTCCTACGAGCTCC+TGG | + | chr1_3:75070150-75070169 | Msa0140770:CDS | 55.0% | |
| TCTGAACTCCAGGAGCTCGT+AGG | - | chr1_3:75070161-75070180 | None:intergenic | 55.0% | |
| CGAGGGTCTCTCAAGGTTTC+AGG | - | chr1_3:75070231-75070250 | None:intergenic | 55.0% | |
| GAAACCTTGAGAGACCCTCG+AGG | + | chr1_3:75070231-75070250 | Msa0140770:CDS | 55.0% | |
| TGGATGTGGGACTTGGGGTT+GGG | - | chr1_3:75070918-75070937 | None:intergenic | 55.0% | |
| TCTCCTGGATGTGGGACTTG+GGG | - | chr1_3:75070923-75070942 | None:intergenic | 55.0% | |
| GGAGGAAGAGGCCATTAAGG+TGG | + | chr1_3:75071145-75071164 | Msa0140770:CDS | 55.0% | |
| GAAGAGGCCATTAAGGTGGG+AGG | + | chr1_3:75071149-75071168 | Msa0140770:CDS | 55.0% | |
| GGTCTTGAGTAGCATGGCTG+TGG | - | chr1_3:75071181-75071200 | None:intergenic | 55.0% | |
| TTCAAGACCAGGCGACCTAC+GGG | - | chr1_3:75071344-75071363 | None:intergenic | 55.0% | |
| GTTCAAGACCAGGCGACCTA+CGG | - | chr1_3:75071345-75071364 | None:intergenic | 55.0% | |
| !! | GCACACTTGGGAGCATTAGC+GGG | - | chr1_3:75071530-75071549 | None:intergenic | 55.0% |
| CAAGATCGGTATCGCTCTCC+AGG | - | chr1_3:75072339-75072358 | None:intergenic | 55.0% | |
| CTGGAGAGCGATACCGATCT+TGG | + | chr1_3:75072337-75072356 | Msa0140770:CDS | 55.0% | |
| GGATTTCATGGGTGACGCGT+GGG | - | chr1_3:75072503-75072522 | None:intergenic | 55.0% | |
| CCCATGAAATCCGCAGCATC+TGG | + | chr1_3:75072511-75072530 | Msa0140770:CDS | 55.0% | |
| TTGCACTTGCTCCCCTGGCA+TGG | - | chr1_3:75070086-75070105 | None:intergenic | 60.0% | |
| TGCCAGGGGAGCAAGTGCAA+AGG | + | chr1_3:75070086-75070105 | Msa0140770:CDS | 60.0% | |
| GCCAGGGGAGCAAGTGCAAA+GGG | + | chr1_3:75070087-75070106 | Msa0140770:CDS | 60.0% | |
| ACCCTTTGCACTTGCTCCCC+TGG | - | chr1_3:75070091-75070110 | None:intergenic | 60.0% | |
| CTGGATGTGGGACTTGGGGT+TGG | - | chr1_3:75070919-75070938 | None:intergenic | 60.0% | |
| CAACCCCAAGTCCCACATCC+AGG | + | chr1_3:75070917-75070936 | Msa0140770:CDS | 60.0% | |
| ACCTGTCGGGTGCCCAAGAT+CGG | - | chr1_3:75072353-75072372 | None:intergenic | 60.0% | |
| TTCATGGGTGACGCGTGGGT+CGG | - | chr1_3:75072499-75072518 | None:intergenic | 60.0% | |
| CGGATTTCATGGGTGACGCG+TGG | - | chr1_3:75072504-75072523 | None:intergenic | 60.0% | |
| ! | AGGCGACCTACGGGCTGAAG+GGG | - | chr1_3:75071335-75071354 | None:intergenic | 65.0% |
| ! | CAGGCGACCTACGGGCTGAA+GGG | - | chr1_3:75071336-75071355 | None:intergenic | 65.0% |
| ACCGATCTTGGGCACCCGAC+AGG | + | chr1_3:75072349-75072368 | Msa0140770:CDS | 65.0% | |
| ! | CCAGGCGACCTACGGGCTGA+AGG | - | chr1_3:75071337-75071356 | None:intergenic | 70.0% |
| CCTTCAGCCCGTAGGTCGCC+TGG | + | chr1_3:75071334-75071353 | Msa0140770:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 75068513 | 75073097 | 75068513 | ID=Msa0140770;Name=Msa0140770 |
| chr1_3 | mRNA | 75068513 | 75073097 | 75068513 | ID=Msa0140770-mRNA-1;Parent=Msa0140770;Name=Msa0140770-mRNA-1;_AED=0.09;_eAED=0.09;_QI=185|1|1|1|1|1|8|378|492 |
| chr1_3 | exon | 75068513 | 75068712 | 75068513 | ID=Msa0140770-mRNA-1:exon:26244;Parent=Msa0140770-mRNA-1 |
| chr1_3 | exon | 75068888 | 75068984 | 75068888 | ID=Msa0140770-mRNA-1:exon:26245;Parent=Msa0140770-mRNA-1 |
| chr1_3 | exon | 75070004 | 75070281 | 75070004 | ID=Msa0140770-mRNA-1:exon:26246;Parent=Msa0140770-mRNA-1 |
| chr1_3 | exon | 75070828 | 75071604 | 75070828 | ID=Msa0140770-mRNA-1:exon:26247;Parent=Msa0140770-mRNA-1 |
| chr1_3 | exon | 75071757 | 75071846 | 75071757 | ID=Msa0140770-mRNA-1:exon:26248;Parent=Msa0140770-mRNA-1 |
| chr1_3 | exon | 75072303 | 75072370 | 75072303 | ID=Msa0140770-mRNA-1:exon:26249;Parent=Msa0140770-mRNA-1 |
| chr1_3 | exon | 75072458 | 75072551 | 75072458 | ID=Msa0140770-mRNA-1:exon:26250;Parent=Msa0140770-mRNA-1 |
| chr1_3 | exon | 75072660 | 75073097 | 75072660 | ID=Msa0140770-mRNA-1:exon:26251;Parent=Msa0140770-mRNA-1 |
| chr1_3 | five_prime_UTR | 75068513 | 75068697 | 75068513 | ID=Msa0140770-mRNA-1:five_prime_utr;Parent=Msa0140770-mRNA-1 |
| chr1_3 | CDS | 75068698 | 75068712 | 75068698 | ID=Msa0140770-mRNA-1:cds;Parent=Msa0140770-mRNA-1 |
| chr1_3 | CDS | 75068888 | 75068984 | 75068888 | ID=Msa0140770-mRNA-1:cds;Parent=Msa0140770-mRNA-1 |
| chr1_3 | CDS | 75070004 | 75070281 | 75070004 | ID=Msa0140770-mRNA-1:cds;Parent=Msa0140770-mRNA-1 |
| chr1_3 | CDS | 75070828 | 75071604 | 75070828 | ID=Msa0140770-mRNA-1:cds;Parent=Msa0140770-mRNA-1 |
| chr1_3 | CDS | 75071757 | 75071846 | 75071757 | ID=Msa0140770-mRNA-1:cds;Parent=Msa0140770-mRNA-1 |
| chr1_3 | CDS | 75072303 | 75072370 | 75072303 | ID=Msa0140770-mRNA-1:cds;Parent=Msa0140770-mRNA-1 |
| chr1_3 | CDS | 75072458 | 75072551 | 75072458 | ID=Msa0140770-mRNA-1:cds;Parent=Msa0140770-mRNA-1 |
| chr1_3 | CDS | 75072660 | 75072719 | 75072660 | ID=Msa0140770-mRNA-1:cds;Parent=Msa0140770-mRNA-1 |
| chr1_3 | three_prime_UTR | 75072720 | 75073097 | 75072720 | ID=Msa0140770-mRNA-1:three_prime_utr;Parent=Msa0140770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
