Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870460 | XP_003607049.1 | 86.226 | 363 | 10 | 3 | 1 | 330 | 1 | 356 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870460 | G7JJU3 | 86.226 | 363 | 10 | 3 | 1 | 330 | 1 | 356 | 0.0 | 582 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001550 | Msa0870460 | 0.858223 | 9.547362e-63 | -8.615850e-47 |
| Msa0002110 | Msa0870460 | 0.833177 | 6.193274e-56 | -8.615850e-47 |
| Msa0011450 | Msa0870460 | 0.819311 | 1.241605e-52 | -8.615850e-47 |
| Msa0017300 | Msa0870460 | 0.856077 | 4.105451e-62 | -8.615850e-47 |
| Msa0046110 | Msa0870460 | 0.817403 | 3.358548e-52 | -8.615850e-47 |
| Msa0065670 | Msa0870460 | 0.821112 | 4.801255e-53 | -8.615850e-47 |
| Msa0077570 | Msa0870460 | 0.811403 | 7.125878e-51 | -8.615850e-47 |
| Msa0081610 | Msa0870460 | 0.841492 | 4.597798e-58 | -8.615850e-47 |
| Msa0093950 | Msa0870460 | 0.811711 | 6.106235e-51 | -8.615850e-47 |
| Msa0094170 | Msa0870460 | 0.838563 | 2.670140e-57 | -8.615850e-47 |
| Msa0095810 | Msa0870460 | 0.836454 | 9.267717e-57 | -8.615850e-47 |
| Msa0095890 | Msa0870460 | 0.819270 | 1.268132e-52 | -8.615850e-47 |
| Msa0102240 | Msa0870460 | -0.802511 | 5.419204e-49 | -8.615850e-47 |
| Msa0111110 | Msa0870460 | 0.825839 | 3.766942e-54 | -8.615850e-47 |
| Msa0120100 | Msa0870460 | 0.802282 | 6.041884e-49 | -8.615850e-47 |
| Msa0120160 | Msa0870460 | 0.813802 | 2.128580e-51 | -8.615850e-47 |
| Msa0646410 | Msa0870460 | 0.841975 | 3.429755e-58 | -8.615850e-47 |
| Msa0654490 | Msa0870460 | 0.804403 | 2.197218e-49 | -8.615850e-47 |
| Msa0674480 | Msa0870460 | -0.800817 | 1.206312e-48 | -8.615850e-47 |
| Msa0676570 | Msa0870460 | 0.803473 | 3.428108e-49 | -8.615850e-47 |
| Msa0693340 | Msa0870460 | 0.823560 | 1.296914e-53 | -8.615850e-47 |
| Msa0723090 | Msa0870460 | -0.817677 | 2.912545e-52 | -8.615850e-47 |
| Msa0734250 | Msa0870460 | -0.813247 | 2.819567e-51 | -8.615850e-47 |
| Msa0742370 | Msa0870460 | 0.812984 | 3.218955e-51 | -8.615850e-47 |
| Msa0795750 | Msa0870460 | -0.802453 | 5.570521e-49 | -8.615850e-47 |
| Msa0810440 | Msa0870460 | -0.803201 | 3.903937e-49 | -8.615850e-47 |
| Msa0813160 | Msa0870460 | -0.802814 | 4.692735e-49 | -8.615850e-47 |
| Msa0823480 | Msa0870460 | 0.807682 | 4.485962e-50 | -8.615850e-47 |
| Msa0833200 | Msa0870460 | 0.821909 | 3.142083e-53 | -8.615850e-47 |
| Msa0138990 | Msa0870460 | 0.813149 | 2.961624e-51 | -8.615850e-47 |
| Msa0140770 | Msa0870460 | 0.833075 | 6.566176e-56 | -8.615850e-47 |
| Msa0151380 | Msa0870460 | 0.804629 | 1.970599e-49 | -8.615850e-47 |
| Msa0151510 | Msa0870460 | 0.823093 | 1.667522e-53 | -8.615850e-47 |
| Msa0154890 | Msa0870460 | 0.803115 | 4.065556e-49 | -8.615850e-47 |
| Msa0173950 | Msa0870460 | 0.826386 | 2.790692e-54 | -8.615850e-47 |
| Msa0189560 | Msa0870460 | 0.835121 | 2.017936e-56 | -8.615850e-47 |
| Msa0220400 | Msa0870460 | 0.838710 | 2.446081e-57 | -8.615850e-47 |
| Msa0225190 | Msa0870460 | 0.810066 | 1.386240e-50 | -8.615850e-47 |
| Msa0225790 | Msa0870460 | 0.829281 | 5.621087e-55 | -8.615850e-47 |
| Msa0365210 | Msa0870460 | -0.834117 | 3.607081e-56 | -8.615850e-47 |
| Msa0375330 | Msa0870460 | 0.868001 | 9.026603e-66 | -8.615850e-47 |
| Msa0380400 | Msa0870460 | 0.859781 | 3.261765e-63 | -8.615850e-47 |
| Msa0380450 | Msa0870460 | 0.803882 | 2.819091e-49 | -8.615850e-47 |
| Msa0389080 | Msa0870460 | 0.814994 | 1.160201e-51 | -8.615850e-47 |
| Msa0417790 | Msa0870460 | 0.817642 | 2.966976e-52 | -8.615850e-47 |
| Msa0428270 | Msa0870460 | 0.815252 | 1.017070e-51 | -8.615850e-47 |
| Msa0476170 | Msa0870460 | 0.858827 | 6.303123e-63 | -8.615850e-47 |
| Msa0476600 | Msa0870460 | 0.805195 | 1.500702e-49 | -8.615850e-47 |
| Msa0479760 | Msa0870460 | 0.834671 | 2.619079e-56 | -8.615850e-47 |
| Msa0241750 | Msa0870460 | -0.802445 | 5.592563e-49 | -8.615850e-47 |
| Msa0260580 | Msa0870460 | 0.838452 | 2.851922e-57 | -8.615850e-47 |
| Msa0260640 | Msa0870460 | 0.826739 | 2.299394e-54 | -8.615850e-47 |
| Msa0261350 | Msa0870460 | 0.815914 | 7.241551e-52 | -8.615850e-47 |
| Msa0263230 | Msa0870460 | -0.814989 | 1.163067e-51 | -8.615850e-47 |
| Msa0288620 | Msa0870460 | -0.800425 | 1.449887e-48 | -8.615850e-47 |
| Msa0299130 | Msa0870460 | 0.811282 | 7.569780e-51 | -8.615850e-47 |
| Msa0299530 | Msa0870460 | 0.822725 | 2.031243e-53 | -8.615850e-47 |
| Msa0326170 | Msa0870460 | 0.843491 | 1.356203e-58 | -8.615850e-47 |
| Msa0334450 | Msa0870460 | 0.804916 | 1.716435e-49 | -8.615850e-47 |
| Msa0340700 | Msa0870460 | 0.802477 | 5.507624e-49 | -8.615850e-47 |
| Msa0523430 | Msa0870460 | 0.824626 | 7.290884e-54 | -8.615850e-47 |
| Msa0523490 | Msa0870460 | 0.835798 | 1.360212e-56 | -8.615850e-47 |
| Msa0550990 | Msa0870460 | 0.802120 | 6.521508e-49 | -8.615850e-47 |
| Msa0559450 | Msa0870460 | 0.838948 | 2.122771e-57 | -8.615850e-47 |
| Msa0559650 | Msa0870460 | 0.817216 | 3.699123e-52 | -8.615850e-47 |
| Msa0576090 | Msa0870460 | 0.819534 | 1.104484e-52 | -8.615850e-47 |
| Msa0576120 | Msa0870460 | 0.807055 | 6.093129e-50 | -8.615850e-47 |
| Msa0583360 | Msa0870460 | 0.825901 | 3.639467e-54 | -8.615850e-47 |
| Msa0590620 | Msa0870460 | 0.813553 | 2.415393e-51 | -8.615850e-47 |
| Msa0592330 | Msa0870460 | -0.818998 | 1.462638e-52 | -8.615850e-47 |
| Msa0853200 | Msa0870460 | 0.814861 | 1.241693e-51 | -8.615850e-47 |
| Msa0862480 | Msa0870460 | 0.805123 | 1.553920e-49 | -8.615850e-47 |
| Msa0869420 | Msa0870460 | 0.805439 | 1.334166e-49 | -8.615850e-47 |
| Msa0870460 | Msa0936140 | 0.826289 | 2.943105e-54 | -8.615850e-47 |
| Msa0870460 | Msa0964400 | 0.801044 | 1.084297e-48 | -8.615850e-47 |
| Msa0870460 | Msa0971690 | 0.809934 | 1.480207e-50 | -8.615850e-47 |
| Msa0870460 | Msa1002550 | 0.801494 | 8.767212e-49 | -8.615850e-47 |
| Msa0870460 | Msa1044250 | -0.816535 | 5.259340e-52 | -8.615850e-47 |
| Msa0870460 | Msa1106590 | -0.838519 | 2.740566e-57 | -8.615850e-47 |
| Msa0870460 | Msa1129200 | 0.815692 | 8.114426e-52 | -8.615850e-47 |
| Msa0870460 | Msa1129300 | 0.800760 | 1.238877e-48 | -8.615850e-47 |
| Msa0870460 | Msa1130060 | -0.838958 | 2.110316e-57 | -8.615850e-47 |
| Msa0870460 | Msa1143370 | 0.804607 | 1.992180e-49 | -8.615850e-47 |
| Msa0870460 | Msa1155170 | 0.802142 | 6.455710e-49 | -8.615850e-47 |
| Msa0870460 | Msa1194240 | -0.813277 | 2.777025e-51 | -8.615850e-47 |
| Msa0870460 | Msa1207920 | 0.811780 | 5.897950e-51 | -8.615850e-47 |
| Msa0870460 | Msa1225860 | 0.824636 | 7.251149e-54 | -8.615850e-47 |
| Msa0870460 | Msa1236110 | 0.811361 | 7.275489e-51 | -8.615850e-47 |
| Msa0870460 | Msa1273620 | 0.814685 | 1.358112e-51 | -8.615850e-47 |
| Msa0870460 | Msa1285360 | 0.849851 | 2.479201e-60 | -8.615850e-47 |
| Msa0870460 | Msa1340200 | -0.813402 | 2.607114e-51 | -8.615850e-47 |
| Msa0870460 | Msa1342960 | 0.802336 | 5.888769e-49 | -8.615850e-47 |
| Msa0870460 | Msa1348170 | 0.864401 | 1.249117e-64 | -8.615850e-47 |
| Msa0870460 | Msa1356600 | 0.842627 | 2.303715e-58 | -8.615850e-47 |
| Msa0870460 | Msa1363820 | 0.800503 | 1.397738e-48 | -8.615850e-47 |
| Msa0870460 | Msa1375610 | 0.865717 | 4.823523e-65 | -8.615850e-47 |
| Msa0870460 | Msa1375970 | 0.801124 | 1.043921e-48 | -8.615850e-47 |
| Msa0870460 | Msa1376550 | 0.860451 | 2.047011e-63 | -8.615850e-47 |
| Msa0870460 | Msa1389900 | -0.818550 | 1.849260e-52 | -8.615850e-47 |
| Msa0870460 | Msa1395430 | 0.814041 | 1.885132e-51 | -8.615850e-47 |
| Msa0870460 | Msa1407880 | -0.807638 | 4.582834e-50 | -8.615850e-47 |
| Msa0870460 | Msa1412330 | 0.824393 | 8.272222e-54 | -8.615850e-47 |
| Msa0870460 | Msa1444130 | 0.805166 | 1.522181e-49 | -8.615850e-47 |
| Msa0870460 | Msa1464090 | -0.819718 | 1.002595e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870460 | MtrunA17_Chr6g0451961 | 86.226 | 363 | 10 | 3 | 1 | 330 | 1 | 356 | 0.0 | 582 |
| Msa0870460 | MtrunA17_Chr1g0207651 | 31.831 | 355 | 176 | 9 | 27 | 329 | 24 | 364 | 8.54e-41 | 146 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0870460 | AT5G14970.1 | 47.090 | 378 | 129 | 12 | 1 | 330 | 1 | 355 | 1.12e-92 | 280 |
| Msa0870460 | AT2G14910.1 | 32.908 | 392 | 183 | 10 | 1 | 329 | 1 | 375 | 7.20e-44 | 155 |
| Msa0870460 | AT2G14910.2 | 31.165 | 369 | 174 | 10 | 1 | 306 | 1 | 352 | 8.08e-34 | 128 |
| Msa0870460 | AT1G63610.1 | 26.923 | 260 | 164 | 7 | 74 | 328 | 88 | 326 | 1.56e-13 | 70.9 |
Find 106 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATTTGGGGTTAGCGAATT+TGG | 0.145194 | 6_1:+4865244 | Msa0870460:CDS |
| GGAAGCTAGCTCTAACTTTA+TGG | 0.233045 | 6_1:+4866986 | Msa0870460:CDS |
| GAGAAGGTTGTTTCTGATTT+GGG | 0.261359 | 6_1:+4865230 | Msa0870460:CDS |
| TGAGAAGGTTGTTTCTGATT+TGG | 0.269725 | 6_1:+4865229 | Msa0870460:CDS |
| TGAAACACCTTTGGAGAGTT+TGG | 0.272428 | 6_1:+4865172 | Msa0870460:CDS |
| AGGAAGAAGAGAGAGGGGAG+AGG | 0.316167 | 6_1:-4862738 | None:intergenic |
| ATTGGCAGGTGTATGTTATT+AGG | 0.317981 | 6_1:+4867494 | Msa0870460:intron |
| CTTGTTTCTTCTATCATCAC+TGG | 0.342003 | 6_1:+4863053 | Msa0870460:CDS |
| GGGAGAGGGTGGTGGAGAGA+TGG | 0.342989 | 6_1:-4862723 | None:intergenic |
| TACCGTACAAGGCTTATAAC+TGG | 0.362093 | 6_1:-4867663 | None:intergenic |
| AGAGAGAGGGGAGAGGGTGG+TGG | 0.369712 | 6_1:-4862731 | None:intergenic |
| AGGTCATCACTTAAGAGAAT+TGG | 0.371140 | 6_1:+4867514 | Msa0870460:CDS |
| GGAGAGGGTGGTGGAGAGAT+GGG | 0.382331 | 6_1:-4862722 | None:intergenic |
| TGTGACATGCTTTAATGCTT+TGG | 0.385756 | 6_1:-4867784 | None:intergenic |
| GATGTCCTTGACGAGGAATC+TGG | 0.386448 | 6_1:+4865118 | Msa0870460:CDS |
| CTTTGGAGATTTGCCGCCTC+AGG | 0.387256 | 6_1:+4865298 | Msa0870460:CDS |
| ACACCAGTTCAATGTAAAAC+TGG | 0.389970 | 6_1:+4867691 | Msa0870460:three_prime_UTR |
| GGTGGAGAGATGGGTGAGAT+GGG | 0.394624 | 6_1:-4862713 | None:intergenic |
| GGAAGAAGAGAGAGGGGAGA+GGG | 0.409734 | 6_1:-4862737 | None:intergenic |
| GAAATGTCACATGCGGATCA+AGG | 0.413539 | 6_1:+4865140 | Msa0870460:CDS |
| ATCGTTGTTGTGTTATAAAG+AGG | 0.415993 | 6_1:-4862587 | None:intergenic |
| CACTGTGAAGCCACGGTTGA+AGG | 0.422214 | 6_1:-4862856 | None:intergenic |
| GGCGGATTGTGAAACACCTT+TGG | 0.422441 | 6_1:+4865163 | Msa0870460:CDS |
| AGATGGGTGAGATGGGTTGT+TGG | 0.427729 | 6_1:-4862706 | None:intergenic |
| CAAACTATTTCTACTATGCT+TGG | 0.427819 | 6_1:+4862966 | Msa0870460:CDS |
| AGAAGAGAGAGGGGAGAGGG+TGG | 0.429852 | 6_1:-4862734 | None:intergenic |
| TGTTCTTCTTCTTCCTTCCA+TGG | 0.447455 | 6_1:+4862638 | Msa0870460:exon |
| TGGTGGAGAGATGGGTGAGA+TGG | 0.453731 | 6_1:-4862714 | None:intergenic |
| GTCTCCGTCAACGTGGTGGC+AGG | 0.465322 | 6_1:-4862808 | None:intergenic |
| TGAAACACCTTTAGAGATAA+CGG | 0.471773 | 6_1:-4862919 | None:intergenic |
| CTTATAACTGGTGTTATACA+AGG | 0.475909 | 6_1:-4867651 | None:intergenic |
| TTGCATTTGAGCTGTGTTGT+CGG | 0.482310 | 6_1:+4867545 | Msa0870460:CDS |
| TTTGGAGAGTTTGGAGGTGA+AGG | 0.488716 | 6_1:+4865181 | Msa0870460:CDS |
| AAGGGTGGTGAAGAGGAACA+TGG | 0.497735 | 6_1:+4865200 | Msa0870460:CDS |
| CACTATGGAATGCAGAATAC+AGG | 0.499197 | 6_1:+4865096 | Msa0870460:CDS |
| ACATCCTGCCACCACGTTGA+CGG | 0.502069 | 6_1:+4862804 | Msa0870460:CDS |
| GTCAACGTGGTGGCAGGATG+TGG | 0.506655 | 6_1:-4862802 | None:intergenic |
| GCAGGATGTGGTGAAGAGAA+AGG | 0.507084 | 6_1:-4862790 | None:intergenic |
| TCGGCCGTCATCAGAGGAAG+TGG | 0.517662 | 6_1:+4866911 | Msa0870460:CDS |
| AGGGTGGTGAAGAGGAACAT+GGG | 0.520509 | 6_1:+4865201 | Msa0870460:CDS |
| GATAACTCCGTTATCTCTAA+AGG | 0.520590 | 6_1:+4862912 | Msa0870460:CDS |
| TTGAGATTCAACCTCTTCAT+CGG | 0.522451 | 6_1:+4863027 | Msa0870460:CDS |
| CGGCGGAGGAAGAAGAGAGA+GGG | 0.526127 | 6_1:-4862744 | None:intergenic |
| CAATGTAAAACTGGAAGTGT+GGG | 0.530848 | 6_1:+4867700 | Msa0870460:three_prime_UTR |
| GGTGATGCGTGAGAGGATGA+AGG | 0.535643 | 6_1:-4862685 | None:intergenic |
| AAATGTCACATGCGGATCAA+GGG | 0.539240 | 6_1:+4865141 | Msa0870460:CDS |
| ATAAGCTAAGGTAAAGGCTA+AGG | 0.540160 | 6_1:+4862556 | Msa0870460:five_prime_UTR |
| GGAGGTGAAGGGTGGTGAAG+AGG | 0.541144 | 6_1:+4865193 | Msa0870460:CDS |
| GAGAAGAAGTTCTAAAAGCA+AGG | 0.541887 | 6_1:-4867740 | None:intergenic |
| GAAAGGGTCGACGGTGGCGA+TGG | 0.544691 | 6_1:-4862773 | None:intergenic |
| GGTTGTTGGTGATGCGTGAG+AGG | 0.550045 | 6_1:-4862692 | None:intergenic |
| GGCGATGGTGATGACGGCGG+AGG | 0.550503 | 6_1:-4862758 | None:intergenic |
| TATAACTGGTGTTATACAAG+GGG | 0.551015 | 6_1:-4867649 | None:intergenic |
| TCAATGTAAAACTGGAAGTG+TGG | 0.551448 | 6_1:+4867699 | Msa0870460:three_prime_UTR |
| GACTATCACCAGGACGATGA+TGG | 0.551535 | 6_1:+4867032 | Msa0870460:CDS |
| TTGGAGAGTTTGGAGGTGAA+GGG | 0.552664 | 6_1:+4865182 | Msa0870460:CDS |
| AGAAGGTTGTTTCTGATTTG+GGG | 0.556586 | 6_1:+4865231 | Msa0870460:CDS |
| TTGTTTCTTCTATCATCACT+GGG | 0.557906 | 6_1:+4863054 | Msa0870460:CDS |
| TTTATAGAGAATAATAATGG+TGG | 0.558374 | 6_1:+4867571 | Msa0870460:exon |
| TCCTCCACTTCCTCTGATGA+CGG | 0.560560 | 6_1:-4866915 | None:intergenic |
| GAGAGTTTGGAGGTGAAGGG+TGG | 0.560667 | 6_1:+4865185 | Msa0870460:CDS |
| ACCAGAAAAGCAACTTTGCT+AGG | 0.561251 | 6_1:-4867094 | None:intergenic |
| GAAACAAGTAACCGATGAAG+AGG | 0.564989 | 6_1:-4863038 | None:intergenic |
| AACACCTTTGGAGAGTTTGG+AGG | 0.566689 | 6_1:+4865175 | Msa0870460:CDS |
| CAGGATGTGGTGAAGAGAAA+GGG | 0.572257 | 6_1:-4862789 | None:intergenic |
| ACTCATCACCATCATCGTCC+TGG | 0.573711 | 6_1:-4867040 | None:intergenic |
| TGCAGCAGCAGTAGTCGCGC+GGG | 0.576095 | 6_1:+4865272 | Msa0870460:CDS |
| GACGGTGGCGATGGTGATGA+CGG | 0.579091 | 6_1:-4862764 | None:intergenic |
| GTAACATCAAAATGATCAGA+AGG | 0.580361 | 6_1:-4862996 | None:intergenic |
| ATTGTTGATGCTGCCATGGA+AGG | 0.584804 | 6_1:-4862651 | None:intergenic |
| TTGCAGCAGCAGTAGTCGCG+CGG | 0.586832 | 6_1:+4865271 | Msa0870460:CDS |
| GATAGGTGACTGAAATGTCT+CGG | 0.586884 | 6_1:+4866892 | Msa0870460:intron |
| TGAAATTGTTGATGCTGCCA+TGG | 0.587458 | 6_1:-4862655 | None:intergenic |
| GGCGGAGGAAGAAGAGAGAG+GGG | 0.602193 | 6_1:-4862743 | None:intergenic |
| GTCTGAGTTGACAAACATGA+AGG | 0.606464 | 6_1:+4865346 | Msa0870460:CDS |
| CACCAGTTATAAGCCTTGTA+CGG | 0.606516 | 6_1:+4867661 | Msa0870460:three_prime_UTR |
| TGCTAGGTAATCGCGAGAAG+TGG | 0.609297 | 6_1:-4867078 | None:intergenic |
| AATGTCTCGGCCGTCATCAG+AGG | 0.610274 | 6_1:+4866905 | Msa0870460:CDS |
| TAGATATCACTGTGAAGCCA+CGG | 0.611648 | 6_1:-4862863 | None:intergenic |
| TTCACCTCCAAACTCTCCAA+AGG | 0.618065 | 6_1:-4865179 | None:intergenic |
| AATGTCACATGCGGATCAAG+GGG | 0.619045 | 6_1:+4865142 | Msa0870460:CDS |
| GTGATGCGTGAGAGGATGAA+GGG | 0.624710 | 6_1:-4862684 | None:intergenic |
| TAGAGCTAGCTTCCTCGACA+AGG | 0.624862 | 6_1:-4866977 | None:intergenic |
| GAGATAACGGAGTTATCGAG+AGG | 0.629687 | 6_1:-4862906 | None:intergenic |
| ACGGCGGAGGAAGAAGAGAG+AGG | 0.631341 | 6_1:-4862745 | None:intergenic |
| GTCACATGCGGATCAAGGGG+CGG | 0.635815 | 6_1:+4865145 | Msa0870460:CDS |
| CGTAAATCAACCTTCAACCG+TGG | 0.638048 | 6_1:+4862846 | Msa0870460:CDS |
| TTTATGGAACAATCAGTCGA+AGG | 0.638089 | 6_1:+4867002 | Msa0870460:CDS |
| GGAACATGGGGAAACTGAGA+AGG | 0.640390 | 6_1:+4865214 | Msa0870460:CDS |
| TTATAACTGGTGTTATACAA+GGG | 0.641000 | 6_1:-4867650 | None:intergenic |
| TGGTGAAGAGAAAGGGTCGA+CGG | 0.641567 | 6_1:-4862782 | None:intergenic |
| GGGTGGTGAAGAGGAACATG+GGG | 0.644636 | 6_1:+4865202 | Msa0870460:CDS |
| TTTGAGAAGATTCCTTGTCG+AGG | 0.647364 | 6_1:+4866965 | Msa0870460:CDS |
| GCCGTCATCAGAGGAAGTGG+AGG | 0.649197 | 6_1:+4866914 | Msa0870460:CDS |
| CATTTCCAGATTCCTCGTCA+AGG | 0.649722 | 6_1:-4865123 | None:intergenic |
| GAATCTGGAAATGTCACATG+CGG | 0.666921 | 6_1:+4865133 | Msa0870460:CDS |
| TGAATGTATTTCAGAGCCTG+AGG | 0.668987 | 6_1:-4865314 | None:intergenic |
| ATGTATTTCAGAGCCTGAGG+CGG | 0.676018 | 6_1:-4865311 | None:intergenic |
| TGAGTTGACAAACATGAAGG+AGG | 0.679770 | 6_1:+4865349 | Msa0870460:CDS |
| CAACGTCGTCTCCGTCAACG+TGG | 0.687491 | 6_1:-4862815 | None:intergenic |
| CGTCGTCTCCGTCAACGTGG+TGG | 0.693744 | 6_1:-4862812 | None:intergenic |
| AGGAAACATAGACTATCACC+AGG | 0.693889 | 6_1:+4867022 | Msa0870460:CDS |
| GGTGGCGATGGTGATGACGG+CGG | 0.704025 | 6_1:-4862761 | None:intergenic |
| TGAAGAGAAAGGGTCGACGG+TGG | 0.716888 | 6_1:-4862779 | None:intergenic |
| AATACAGGATGTCCTTGACG+AGG | 0.724418 | 6_1:+4865111 | Msa0870460:CDS |
| ATAACTGGTGTTATACAAGG+GGG | 0.729779 | 6_1:-4867648 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATTATAGATAATTG+AGG | - | chr6_1:4863095-4863114 | None:intergenic | 10.0% |
| !!! | TCATTTTGTTAAATTATTAT+CGG | + | chr6_1:4863498-4863517 | Msa0870460:intron | 10.0% |
| !!! | TCATTTTGTCAAATTATTAT+CGG | + | chr6_1:4863289-4863308 | Msa0870460:intron | 15.0% |
| !!! | GTTGACAATATAAATTATTT+TGG | - | chr6_1:4863952-4863971 | None:intergenic | 15.0% |
| !! | TTATGAATTTAGCATTATAT+TGG | + | chr6_1:4864036-4864055 | Msa0870460:intron | 15.0% |
| !! | ATAAACTTAAAATTCAATCA+AGG | - | chr6_1:4865482-4865501 | None:intergenic | 15.0% |
| !!! | TGAATTTTAAGTTTATGTAT+CGG | + | chr6_1:4865486-4865505 | Msa0870460:intron | 15.0% |
| !! | TCACAAATTTACAAAATAAA+CGG | - | chr6_1:4866059-4866078 | None:intergenic | 15.0% |
| !!! | ACTTTTATAGAGAATAATAA+TGG | + | chr6_1:4867568-4867587 | Msa0870460:exon | 15.0% |
| !! | AAATTATAGATAATTGAGGT+AGG | - | chr6_1:4863091-4863110 | None:intergenic | 20.0% |
| !! | TATTTGATAAATCTCAAAGT+TGG | + | chr6_1:4864547-4864566 | Msa0870460:intron | 20.0% |
| !!! | GAATGAATTTTACAAAATCA+GGG | + | chr6_1:4864609-4864628 | Msa0870460:intron | 20.0% |
| !!! | AATGAATTTTACAAAATCAG+GGG | + | chr6_1:4864610-4864629 | Msa0870460:intron | 20.0% |
| !! | GTGACAACTTAATATAAATA+GGG | - | chr6_1:4864843-4864862 | None:intergenic | 20.0% |
| !!! | GAAATTGATAAGTTTTGAAT+TGG | + | chr6_1:4865049-4865068 | Msa0870460:intron | 20.0% |
| !!! | TGCAATATTTTATTATTCCA+AGG | + | chr6_1:4865451-4865470 | Msa0870460:intron | 20.0% |
| !!! | AATATTTTATTATTCCAAGG+AGG | + | chr6_1:4865454-4865473 | Msa0870460:intron | 20.0% |
| !!! | GAATTTTAAGTTTATGTATC+GGG | + | chr6_1:4865487-4865506 | Msa0870460:intron | 20.0% |
| !!! | AATAATAACCTTCAAGTTAT+CGG | - | chr6_1:4865874-4865893 | None:intergenic | 20.0% |
| !!! | GAATAATTTGTTTGAAAGAA+TGG | - | chr6_1:4865993-4866012 | None:intergenic | 20.0% |
| !!! | TTATTCTTTGTTGTTTGTAT+TGG | + | chr6_1:4866007-4866026 | Msa0870460:intron | 20.0% |
| !!! | TATTCTTTGTTGTTTGTATT+GGG | + | chr6_1:4866008-4866027 | Msa0870460:intron | 20.0% |
| !!! | TAGCTTATTTCTATTTGTTA+AGG | + | chr6_1:4866827-4866846 | Msa0870460:intron | 20.0% |
| !!! | TCAAAATATTTTGAACAAGT+TGG | - | chr6_1:4866950-4866969 | None:intergenic | 20.0% |
| !!! | TTAGAATTTTGTTGATTTCA+AGG | + | chr6_1:4867368-4867387 | Msa0870460:intron | 20.0% |
| !! | ACATGATTAAACACAATAAA+CGG | - | chr6_1:4867467-4867486 | None:intergenic | 20.0% |
| !! | TTTATAGAGAATAATAATGG+TGG | + | chr6_1:4867571-4867590 | Msa0870460:exon | 20.0% |
| !!! | GCTTATGTTTTTGTTTTGTT+GGG | - | chr6_1:4862542-4862561 | None:intergenic | 25.0% |
| !!! | AGCTTATGTTTTTGTTTTGT+TGG | - | chr6_1:4862543-4862562 | None:intergenic | 25.0% |
| ! | CAAAACAAAAACATAAGCTA+AGG | + | chr6_1:4862544-4862563 | Msa0870460:five_prime_UTR | 25.0% |
| ! | AAAAACATAAGCTAAGGTAA+AGG | + | chr6_1:4862550-4862569 | Msa0870460:five_prime_UTR | 25.0% |
| !! | TTGTTAAAGTATTATCAGTG+TGG | + | chr6_1:4863704-4863723 | Msa0870460:intron | 25.0% |
| ! | AATTTGAGAGTGACAATAAT+TGG | + | chr6_1:4863876-4863895 | Msa0870460:intron | 25.0% |
| ! | ATACTTGAAAAGATTACGTT+TGG | + | chr6_1:4864299-4864318 | Msa0870460:intron | 25.0% |
| ! | AATTTAGCACTCAAAACATT+AGG | + | chr6_1:4864362-4864381 | Msa0870460:intron | 25.0% |
| ! | ATTTAGCACTCAAAACATTA+GGG | + | chr6_1:4864363-4864382 | Msa0870460:intron | 25.0% |
| ! | AAGATATTATCGCCAAATTA+AGG | + | chr6_1:4864423-4864442 | Msa0870460:intron | 25.0% |
| !! | CAAAATATGAAGTTGGTTAT+CGG | + | chr6_1:4864462-4864481 | Msa0870460:intron | 25.0% |
| ! | TTTGTAAAATTCATTCCAAC+CGG | - | chr6_1:4864605-4864624 | None:intergenic | 25.0% |
| !! | GGAATGAATTTTACAAAATC+AGG | + | chr6_1:4864608-4864627 | Msa0870460:intron | 25.0% |
| ! | CAACTTAATATAAATAGGGA+CGG | - | chr6_1:4864839-4864858 | None:intergenic | 25.0% |
| ! | GGTGACAACTTAATATAAAT+AGG | - | chr6_1:4864844-4864863 | None:intergenic | 25.0% |
| !!! | GCAATATTTTGAAGTTTTAG+AGG | + | chr6_1:4864944-4864963 | Msa0870460:intron | 25.0% |
| !!! | GCTCTATTTTTGTTACTAAT+TGG | + | chr6_1:4864988-4865007 | Msa0870460:intron | 25.0% |
| !!! | TTTTGTTACTAATTGGTTTC+TGG | + | chr6_1:4864995-4865014 | Msa0870460:intron | 25.0% |
| ! | ATAAAAAGTTTCACAACCAT+AGG | - | chr6_1:4865522-4865541 | None:intergenic | 25.0% |
| !! | ATGGTTGTGAAACTTTTTAT+CGG | + | chr6_1:4865522-4865541 | Msa0870460:intron | 25.0% |
| ! | TAAACTCAAATTACTATCAG+TGG | - | chr6_1:4865555-4865574 | None:intergenic | 25.0% |
| !! | GACATTTTTACTTTATGACA+TGG | - | chr6_1:4865637-4865656 | None:intergenic | 25.0% |
| ! | GTTATTATTGTGAGAAACAA+AGG | + | chr6_1:4865885-4865904 | Msa0870460:intron | 25.0% |
| ! | TTGTAAATTTGTGAAAAGTG+AGG | + | chr6_1:4866065-4866084 | Msa0870460:intron | 25.0% |
| ! | ATTGACATATAACTAGTAAG+AGG | - | chr6_1:4866178-4866197 | None:intergenic | 25.0% |
| ! | AATGAATGCATCAAAAGAAA+TGG | + | chr6_1:4866369-4866388 | Msa0870460:intron | 25.0% |
| ! | TTACTCATAGACTGTTTAAA+AGG | + | chr6_1:4866397-4866416 | Msa0870460:intron | 25.0% |
| !!! | GACAATGTTTATTTTCTTTC+AGG | + | chr6_1:4866447-4866466 | Msa0870460:intron | 25.0% |
| !! | AACTAAGTATTGTGAAATAG+CGG | + | chr6_1:4866608-4866627 | Msa0870460:intron | 25.0% |
| ! | AAAAGCAAAATCTGTTGTAA+GGG | - | chr6_1:4867141-4867160 | None:intergenic | 25.0% |
| ! | AAAAAGCAAAATCTGTTGTA+AGG | - | chr6_1:4867142-4867161 | None:intergenic | 25.0% |
| ! | TGATCCATGAAATTGAAAAA+TGG | + | chr6_1:4867263-4867282 | Msa0870460:intron | 25.0% |
| !!! | TAGACCATTTTTCAATTTCA+TGG | - | chr6_1:4867270-4867289 | None:intergenic | 25.0% |
| ! | AAATTGAAAAATGGTCTAAC+CGG | + | chr6_1:4867272-4867291 | Msa0870460:intron | 25.0% |
| ! | ATTTAGTCTCTATATCATTC+CGG | - | chr6_1:4867294-4867313 | None:intergenic | 25.0% |
| ! | AATTTGGTCCATGAAATTAT+AGG | - | chr6_1:4867408-4867427 | None:intergenic | 25.0% |
| ! | TTTAATCATGTTCTTTCCAT+TGG | + | chr6_1:4867476-4867495 | Msa0870460:intron | 25.0% |
| ! | AAAAAGAGGAAGAATATACA+AGG | - | chr6_1:4867600-4867619 | None:intergenic | 25.0% |
| !!! | TTATAACTGGTGTTATACAA+GGG | - | chr6_1:4867653-4867672 | None:intergenic | 25.0% |
| !!! | CATGTCACATTTTAAGAATA+TGG | + | chr6_1:4867798-4867817 | Msa0870460:three_prime_UTR | 25.0% |
| ATCGTTGTTGTGTTATAAAG+AGG | - | chr6_1:4862590-4862609 | None:intergenic | 30.0% | |
| ! | TGAAACACCTTTAGAGATAA+CGG | - | chr6_1:4862922-4862941 | None:intergenic | 30.0% |
| !! | CAAACTATTTCTACTATGCT+TGG | + | chr6_1:4862966-4862985 | Msa0870460:CDS | 30.0% |
| GTAACATCAAAATGATCAGA+AGG | - | chr6_1:4862999-4863018 | None:intergenic | 30.0% | |
| ! | TTGTTTCTTCTATCATCACT+GGG | + | chr6_1:4863054-4863073 | Msa0870460:CDS | 30.0% |
| TTAGAATTTAGTGTCAGTGT+TGG | - | chr6_1:4863251-4863270 | None:intergenic | 30.0% | |
| CTATCAATTATGTGTGTGTT+TGG | + | chr6_1:4863371-4863390 | Msa0870460:intron | 30.0% | |
| GGATTGTGTAAAATTGAGTA+TGG | + | chr6_1:4863784-4863803 | Msa0870460:intron | 30.0% | |
| TTATATTGGTGTGATTCAAG+TGG | + | chr6_1:4864050-4864069 | Msa0870460:intron | 30.0% | |
| !! | GGATGTTTTTAATTGTGCTT+TGG | + | chr6_1:4864117-4864136 | Msa0870460:intron | 30.0% |
| !!! | TGTAGTGATTAGTTTTGTAG+TGG | + | chr6_1:4864145-4864164 | Msa0870460:intron | 30.0% |
| !!! | TGTTGTTTTTAATTGTGCTC+TGG | + | chr6_1:4864276-4864295 | Msa0870460:intron | 30.0% |
| AGGTATCCAAAATATGAAGT+TGG | + | chr6_1:4864455-4864474 | Msa0870460:intron | 30.0% | |
| ! | CGATAACCAACTTCATATTT+TGG | - | chr6_1:4864464-4864483 | None:intergenic | 30.0% |
| !!! | AGTTTTAGAGGATTAATGTG+AGG | + | chr6_1:4864956-4864975 | Msa0870460:intron | 30.0% |
| !!! | GTTTTAGAGGATTAATGTGA+GGG | + | chr6_1:4864957-4864976 | Msa0870460:intron | 30.0% |
| AGAACTATGTTTGTTTCGAT+CGG | + | chr6_1:4865589-4865608 | Msa0870460:intron | 30.0% | |
| TCAATATCATCCATAACAGA+TGG | - | chr6_1:4865745-4865764 | None:intergenic | 30.0% | |
| ATAATATCCTAAACACGCTT+AGG | + | chr6_1:4866216-4866235 | Msa0870460:intron | 30.0% | |
| TAATATCCTAAACACGCTTA+GGG | + | chr6_1:4866217-4866236 | Msa0870460:intron | 30.0% | |
| ! | TAAACATGTGCACAAGTTTT+TGG | + | chr6_1:4866321-4866340 | Msa0870460:intron | 30.0% |
| TTGTACTAAAAAACGTATCG+TGG | - | chr6_1:4866681-4866700 | None:intergenic | 30.0% | |
| ! | AATCAAGTTGCAATTGAAAG+TGG | + | chr6_1:4866792-4866811 | Msa0870460:intron | 30.0% |
| GATATAGAGACTAAATGAAC+CGG | + | chr6_1:4867298-4867317 | Msa0870460:intron | 30.0% | |
| ! | GGACATTAATCTTTTTGAAC+CGG | - | chr6_1:4867320-4867339 | None:intergenic | 30.0% |
| ! | TCTGAAATTGAAAATTCGCA+AGG | - | chr6_1:4867341-4867360 | None:intergenic | 30.0% |
| ACATGCTATAAAAAAGAGCT+CGG | - | chr6_1:4867440-4867459 | None:intergenic | 30.0% | |
| !! | TATAACTGGTGTTATACAAG+GGG | - | chr6_1:4867652-4867671 | None:intergenic | 30.0% |
| !! | CTTATAACTGGTGTTATACA+AGG | - | chr6_1:4867654-4867673 | None:intergenic | 30.0% |
| !! | GTCACATTTTAAGAATATGG+TGG | + | chr6_1:4867801-4867820 | Msa0870460:three_prime_UTR | 30.0% |
| ATAAGCTAAGGTAAAGGCTA+AGG | + | chr6_1:4862556-4862575 | Msa0870460:five_prime_UTR | 35.0% | |
| GATAACTCCGTTATCTCTAA+AGG | + | chr6_1:4862912-4862931 | Msa0870460:CDS | 35.0% | |
| TTGAGATTCAACCTCTTCAT+CGG | + | chr6_1:4863027-4863046 | Msa0870460:CDS | 35.0% | |
| ! | CTTGTTTCTTCTATCATCAC+TGG | + | chr6_1:4863053-4863072 | Msa0870460:CDS | 35.0% |
| TCAGAACAATCATGTGTGTT+TGG | + | chr6_1:4863155-4863174 | Msa0870460:intron | 35.0% | |
| TTAGTGTCAATGTTGAACAC+CGG | - | chr6_1:4863460-4863479 | None:intergenic | 35.0% | |
| AATTGACAGTAATGTGCTGA+CGG | - | chr6_1:4863569-4863588 | None:intergenic | 35.0% | |
| CTGTCAATTATGTGTGTGTT+TGG | + | chr6_1:4863580-4863599 | Msa0870460:intron | 35.0% | |
| !! | TTTGGTTCTTAAGTACCGAA+AGG | + | chr6_1:4863598-4863617 | Msa0870460:intron | 35.0% |
| !! | TTCTATCAGAAGTGTCCTTT+CGG | - | chr6_1:4863616-4863635 | None:intergenic | 35.0% |
| TTAGAGATTCGTAGATTGAG+TGG | + | chr6_1:4863759-4863778 | Msa0870460:intron | 35.0% | |
| GAGTGACAATAATTGGATGA+TGG | + | chr6_1:4863883-4863902 | Msa0870460:intron | 35.0% | |
| TACTTAGCCAACAAAACTTC+AGG | + | chr6_1:4863907-4863926 | Msa0870460:intron | 35.0% | |
| ! | TTTTGGTCAACACATCACTA+CGG | - | chr6_1:4863935-4863954 | None:intergenic | 35.0% |
| GTTCGAACTCTAATCACATA+GGG | - | chr6_1:4864087-4864106 | None:intergenic | 35.0% | |
| TGTTCGAACTCTAATCACAT+AGG | - | chr6_1:4864088-4864107 | None:intergenic | 35.0% | |
| TGTGATTAGAGTTCGAACAT+TGG | + | chr6_1:4864089-4864108 | Msa0870460:intron | 35.0% | |
| GTGATTAGAGTTCGAACATT+GGG | + | chr6_1:4864090-4864109 | Msa0870460:intron | 35.0% | |
| !!! | ATTAGTTTTGTAGTGGAGTG+TGG | + | chr6_1:4864152-4864171 | Msa0870460:intron | 35.0% |
| AGAACCAAATTGTGTAGTTC+AGG | + | chr6_1:4864207-4864226 | Msa0870460:intron | 35.0% | |
| AACTAGAGTCGTATGTGATT+AGG | + | chr6_1:4864234-4864253 | Msa0870460:intron | 35.0% | |
| ! | TTACGTTTGGCATTTGAGTT+TGG | + | chr6_1:4864312-4864331 | Msa0870460:intron | 35.0% |
| !! | CCTTAAAGAGCACCTTAATT+TGG | - | chr6_1:4864438-4864457 | None:intergenic | 35.0% |
| ! | CCAAATTAAGGTGCTCTTTA+AGG | + | chr6_1:4864435-4864454 | Msa0870460:intron | 35.0% |
| AATGGTTGATTAAGGAAGCT+AGG | + | chr6_1:4864491-4864510 | Msa0870460:intron | 35.0% | |
| !! | AGTAAGTTCTGAAATTGGAG+AGG | + | chr6_1:4864634-4864653 | Msa0870460:intron | 35.0% |
| !! | GTAAGTTCTGAAATTGGAGA+GGG | + | chr6_1:4864635-4864654 | Msa0870460:intron | 35.0% |
| !! | TTTGCGCTTTTGAAAGATTG+AGG | + | chr6_1:4864908-4864927 | Msa0870460:intron | 35.0% |
| ! | TTGTGCGAAGATGATGTTTT+TGG | + | chr6_1:4865022-4865041 | Msa0870460:intron | 35.0% |
| ! | TGTGCGAAGATGATGTTTTT+GGG | + | chr6_1:4865023-4865042 | Msa0870460:intron | 35.0% |
| ! | TTTTCGTTAGGTACACACTA+TGG | + | chr6_1:4865081-4865100 | Msa0870460:intron | 35.0% |
| !! | TGAGAAGGTTGTTTCTGATT+TGG | + | chr6_1:4865229-4865248 | Msa0870460:CDS | 35.0% |
| !! | GAGAAGGTTGTTTCTGATTT+GGG | + | chr6_1:4865230-4865249 | Msa0870460:CDS | 35.0% |
| !! | AGAAGGTTGTTTCTGATTTG+GGG | + | chr6_1:4865231-4865250 | Msa0870460:CDS | 35.0% |
| AGAATTATTGACAATCGCTG+TGG | - | chr6_1:4865715-4865734 | None:intergenic | 35.0% | |
| ATGAACAACCGATAACTTGA+AGG | + | chr6_1:4865863-4865882 | Msa0870460:intron | 35.0% | |
| AGTACACCTATAAAAGCCTA+AGG | + | chr6_1:4866257-4866276 | Msa0870460:intron | 35.0% | |
| TTTGGAAGAGATTGTGACAA+TGG | + | chr6_1:4866339-4866358 | Msa0870460:intron | 35.0% | |
| TTTATGGAACAATCAGTCGA+AGG | + | chr6_1:4867002-4867021 | Msa0870460:CDS | 35.0% | |
| !! | GTCTCTGAAATTGTAAGAGT+CGG | + | chr6_1:4867214-4867233 | Msa0870460:intron | 35.0% |
| TTGCGATGCCTATAATTTCA+TGG | + | chr6_1:4867397-4867416 | Msa0870460:intron | 35.0% | |
| AGCTCGGTAAATTGTCAATT+TGG | - | chr6_1:4867424-4867443 | None:intergenic | 35.0% | |
| TAATAACATACACCTGCCAA+TGG | - | chr6_1:4867495-4867514 | None:intergenic | 35.0% | |
| ATTGGCAGGTGTATGTTATT+AGG | + | chr6_1:4867494-4867513 | Msa0870460:intron | 35.0% | |
| AGGTCATCACTTAAGAGAAT+TGG | + | chr6_1:4867514-4867533 | Msa0870460:CDS | 35.0% | |
| TTATACAAGGGGGAAAAATG+GGG | - | chr6_1:4867641-4867660 | None:intergenic | 35.0% | |
| GTTATACAAGGGGGAAAAAT+GGG | - | chr6_1:4867642-4867661 | None:intergenic | 35.0% | |
| TGTTATACAAGGGGGAAAAA+TGG | - | chr6_1:4867643-4867662 | None:intergenic | 35.0% | |
| !! | ATAACTGGTGTTATACAAGG+GGG | - | chr6_1:4867651-4867670 | None:intergenic | 35.0% |
| !!! | TGGTGTTTTTTTACCGTACA+AGG | - | chr6_1:4867677-4867696 | None:intergenic | 35.0% |
| ACACCAGTTCAATGTAAAAC+TGG | + | chr6_1:4867691-4867710 | Msa0870460:three_prime_UTR | 35.0% | |
| ! | CTTCCAGTTTTACATTGAAC+TGG | - | chr6_1:4867697-4867716 | None:intergenic | 35.0% |
| TCAATGTAAAACTGGAAGTG+TGG | + | chr6_1:4867699-4867718 | Msa0870460:three_prime_UTR | 35.0% | |
| ! | CAATGTAAAACTGGAAGTGT+GGG | + | chr6_1:4867700-4867719 | Msa0870460:three_prime_UTR | 35.0% |
| !! | GAGAAGAAGTTCTAAAAGCA+AGG | - | chr6_1:4867743-4867762 | None:intergenic | 35.0% |
| TGTGACATGCTTTAATGCTT+TGG | - | chr6_1:4867787-4867806 | None:intergenic | 35.0% | |
| TGTTCTTCTTCTTCCTTCCA+TGG | + | chr6_1:4862638-4862657 | Msa0870460:exon | 40.0% | |
| TGAAATTGTTGATGCTGCCA+TGG | - | chr6_1:4862658-4862677 | None:intergenic | 40.0% | |
| TAGATATCACTGTGAAGCCA+CGG | - | chr6_1:4862866-4862885 | None:intergenic | 40.0% | |
| GAAACAAGTAACCGATGAAG+AGG | - | chr6_1:4863041-4863060 | None:intergenic | 40.0% | |
| CACATTTCTATCAGAAGGGT+CGG | - | chr6_1:4863220-4863239 | None:intergenic | 40.0% | |
| CGGACACATTTCTATCAGAA+GGG | - | chr6_1:4863224-4863243 | None:intergenic | 40.0% | |
| CCTTCTGATAGAAATGTGTC+CGG | + | chr6_1:4863222-4863241 | Msa0870460:intron | 40.0% | |
| GAAAGGACACTTCTGATAGA+AGG | + | chr6_1:4863615-4863634 | Msa0870460:intron | 40.0% | |
| CGAATCTCTAACACAAACAC+CGG | - | chr6_1:4863750-4863769 | None:intergenic | 40.0% | |
| AGATTCGTAGATTGAGTGGA+TGG | + | chr6_1:4863763-4863782 | Msa0870460:intron | 40.0% | |
| !! | TACGGTACCTGAAGTTTTGT+TGG | - | chr6_1:4863917-4863936 | None:intergenic | 40.0% |
| ACCAAATTGTGTAGTTCAGG+TGG | + | chr6_1:4864210-4864229 | Msa0870460:intron | 40.0% | |
| ACCACCTGAACTACACAATT+TGG | - | chr6_1:4864214-4864233 | None:intergenic | 40.0% | |
| TAGAGTCGTATGTGATTAGG+AGG | + | chr6_1:4864237-4864256 | Msa0870460:intron | 40.0% | |
| TGATTAGGAGGTCGAACATT+TGG | + | chr6_1:4864249-4864268 | Msa0870460:intron | 40.0% | |
| GGTGCACAAATGGTTGATTA+AGG | + | chr6_1:4864483-4864502 | Msa0870460:intron | 40.0% | |
| !! | GGGGAAGTAAGTTCTGAAAT+TGG | + | chr6_1:4864629-4864648 | Msa0870460:intron | 40.0% |
| !!! | TGCACCAGTACAGCATTTTT+TGG | + | chr6_1:4864794-4864813 | Msa0870460:intron | 40.0% |
| !!! | ACCAGTACAGCATTTTTTGG+TGG | + | chr6_1:4864797-4864816 | Msa0870460:intron | 40.0% |
| ACCACCAAAAAATGCTGTAC+TGG | - | chr6_1:4864801-4864820 | None:intergenic | 40.0% | |
| TTAGAGGATTAATGTGAGGG+TGG | + | chr6_1:4864960-4864979 | Msa0870460:intron | 40.0% | |
| !!! | TGGTTGTTGCTGTTTTCGTT+AGG | + | chr6_1:4865069-4865088 | Msa0870460:intron | 40.0% |
| CACTATGGAATGCAGAATAC+AGG | + | chr6_1:4865096-4865115 | Msa0870460:CDS | 40.0% | |
| GAATCTGGAAATGTCACATG+CGG | + | chr6_1:4865133-4865152 | Msa0870460:CDS | 40.0% | |
| AAATGTCACATGCGGATCAA+GGG | + | chr6_1:4865141-4865160 | Msa0870460:CDS | 40.0% | |
| ! | TGAAACACCTTTGGAGAGTT+TGG | + | chr6_1:4865172-4865191 | Msa0870460:CDS | 40.0% |
| ! | TGATTTGGGGTTAGCGAATT+TGG | + | chr6_1:4865244-4865263 | Msa0870460:CDS | 40.0% |
| TGAATGTATTTCAGAGCCTG+AGG | - | chr6_1:4865317-4865336 | None:intergenic | 40.0% | |
| ! | GTCTGAGTTGACAAACATGA+AGG | + | chr6_1:4865346-4865365 | Msa0870460:CDS | 40.0% |
| ! | TGAGTTGACAAACATGAAGG+AGG | + | chr6_1:4865349-4865368 | Msa0870460:CDS | 40.0% |
| ! | AGTTCGCGTTTTTGTTGCTA+TGG | + | chr6_1:4865398-4865417 | Msa0870460:intron | 40.0% |
| ! | ATGGATGATATTGACTACGC+TGG | + | chr6_1:4865751-4865770 | Msa0870460:intron | 40.0% |
| ! | TGATATTGACTACGCTGGTT+TGG | + | chr6_1:4865756-4865775 | Msa0870460:intron | 40.0% |
| !! | GATATTGACTACGCTGGTTT+GGG | + | chr6_1:4865757-4865776 | Msa0870460:intron | 40.0% |
| TTGAAGGAGTTAGGTGGAAA+AGG | + | chr6_1:4865780-4865799 | Msa0870460:intron | 40.0% | |
| AGCATAGAGATGGAAAGAGA+TGG | - | chr6_1:4865930-4865949 | None:intergenic | 40.0% | |
| ACACCTATAAAAGCCTAAGG+AGG | + | chr6_1:4866260-4866279 | Msa0870460:intron | 40.0% | |
| CACCTATAAAAGCCTAAGGA+GGG | + | chr6_1:4866261-4866280 | Msa0870460:intron | 40.0% | |
| ACCTATAAAAGCCTAAGGAG+GGG | + | chr6_1:4866262-4866281 | Msa0870460:intron | 40.0% | |
| TTGCATCATTTCCTGCTTCT+GGG | - | chr6_1:4866482-4866501 | None:intergenic | 40.0% | |
| ATTGCATCATTTCCTGCTTC+TGG | - | chr6_1:4866483-4866502 | None:intergenic | 40.0% | |
| TGATGCAATTAGAACACGAC+AGG | + | chr6_1:4866494-4866513 | Msa0870460:intron | 40.0% | |
| GATGCAATTAGAACACGACA+GGG | + | chr6_1:4866495-4866514 | Msa0870460:intron | 40.0% | |
| ATGCAATTAGAACACGACAG+GGG | + | chr6_1:4866496-4866515 | Msa0870460:intron | 40.0% | |
| !!! | CTGCTATTTTTCTCAATCCG+CGG | + | chr6_1:4866755-4866774 | Msa0870460:intron | 40.0% |
| ATTTACAGTGTTGTCAACCG+CGG | - | chr6_1:4866775-4866794 | None:intergenic | 40.0% | |
| ATCACACTGCATGTCTTGAT+AGG | + | chr6_1:4866875-4866894 | Msa0870460:intron | 40.0% | |
| GATAGGTGACTGAAATGTCT+CGG | + | chr6_1:4866892-4866911 | Msa0870460:intron | 40.0% | |
| TTTGAGAAGATTCCTTGTCG+AGG | + | chr6_1:4866965-4866984 | Msa0870460:CDS | 40.0% | |
| !! | GGAAGCTAGCTCTAACTTTA+TGG | + | chr6_1:4866986-4867005 | Msa0870460:CDS | 40.0% |
| AGGAAACATAGACTATCACC+AGG | + | chr6_1:4867022-4867041 | Msa0870460:CDS | 40.0% | |
| !!! | ACCTAGCAAAGTTGCTTTTC+TGG | + | chr6_1:4867093-4867112 | Msa0870460:CDS | 40.0% |
| ACCAGAAAAGCAACTTTGCT+AGG | - | chr6_1:4867097-4867116 | None:intergenic | 40.0% | |
| ATCATGTTCTTTCCATTGGC+AGG | + | chr6_1:4867480-4867499 | Msa0870460:intron | 40.0% | |
| TTGCATTTGAGCTGTGTTGT+CGG | + | chr6_1:4867545-4867564 | Msa0870460:CDS | 40.0% | |
| ! | CACCAGTTATAAGCCTTGTA+CGG | + | chr6_1:4867661-4867680 | Msa0870460:three_prime_UTR | 40.0% |
| TACCGTACAAGGCTTATAAC+TGG | - | chr6_1:4867666-4867685 | None:intergenic | 40.0% | |
| ATTGTTGATGCTGCCATGGA+AGG | - | chr6_1:4862654-4862673 | None:intergenic | 45.0% | |
| CAGGATGTGGTGAAGAGAAA+GGG | - | chr6_1:4862792-4862811 | None:intergenic | 45.0% | |
| CGTAAATCAACCTTCAACCG+TGG | + | chr6_1:4862846-4862865 | Msa0870460:CDS | 45.0% | |
| !! | GAGATAACGGAGTTATCGAG+AGG | - | chr6_1:4862909-4862928 | None:intergenic | 45.0% |
| CCGGACACATTTCTATCAGA+AGG | - | chr6_1:4863225-4863244 | None:intergenic | 45.0% | |
| ! | TTAGTGTCAGTGTTGGACAC+CGG | - | chr6_1:4863244-4863263 | None:intergenic | 45.0% |
| CGTGTTAGTAGTGTTGTGTC+CGG | + | chr6_1:4863728-4863747 | Msa0870460:intron | 45.0% | |
| !! | AGTTTTGTAGTGGAGTGTGG+AGG | + | chr6_1:4864155-4864174 | Msa0870460:intron | 45.0% |
| GTTGGTTATCGGTGCACAAA+TGG | + | chr6_1:4864473-4864492 | Msa0870460:intron | 45.0% | |
| TGTGGGATGGAAAGAGATAG+AGG | + | chr6_1:4864686-4864705 | Msa0870460:intron | 45.0% | |
| GTGGGATGGAAAGAGATAGA+GGG | + | chr6_1:4864687-4864706 | Msa0870460:intron | 45.0% | |
| TGGGATGGAAAGAGATAGAG+GGG | + | chr6_1:4864688-4864707 | Msa0870460:intron | 45.0% | |
| GGGTTGTGCAAAACATCCTA+CGG | + | chr6_1:4864708-4864727 | Msa0870460:intron | 45.0% | |
| ! | ATAGTGCAACAGTGCTGGAA+TGG | + | chr6_1:4864736-4864755 | Msa0870460:intron | 45.0% |
| GAGGTCAATCAACCTGTTGA+CGG | + | chr6_1:4864768-4864787 | Msa0870460:intron | 45.0% | |
| AATACAGGATGTCCTTGACG+AGG | + | chr6_1:4865111-4865130 | Msa0870460:CDS | 45.0% | |
| CATTTCCAGATTCCTCGTCA+AGG | - | chr6_1:4865126-4865145 | None:intergenic | 45.0% | |
| GAAATGTCACATGCGGATCA+AGG | + | chr6_1:4865140-4865159 | Msa0870460:CDS | 45.0% | |
| AATGTCACATGCGGATCAAG+GGG | + | chr6_1:4865142-4865161 | Msa0870460:CDS | 45.0% | |
| ! | AACACCTTTGGAGAGTTTGG+AGG | + | chr6_1:4865175-4865194 | Msa0870460:CDS | 45.0% |
| TTCACCTCCAAACTCTCCAA+AGG | - | chr6_1:4865182-4865201 | None:intergenic | 45.0% | |
| TTTGGAGAGTTTGGAGGTGA+AGG | + | chr6_1:4865181-4865200 | Msa0870460:CDS | 45.0% | |
| TTGGAGAGTTTGGAGGTGAA+GGG | + | chr6_1:4865182-4865201 | Msa0870460:CDS | 45.0% | |
| ATGTATTTCAGAGCCTGAGG+CGG | - | chr6_1:4865314-4865333 | None:intergenic | 45.0% | |
| ! | ATTCAATCAAGGCACCTCCT+TGG | - | chr6_1:4865471-4865490 | None:intergenic | 45.0% |
| TATCGGGTGAATTGCTCCTA+TGG | + | chr6_1:4865503-4865522 | Msa0870460:intron | 45.0% | |
| ! | TTCGATCGGTGTTTCGATTG+TGG | + | chr6_1:4865603-4865622 | Msa0870460:intron | 45.0% |
| TCTTCCACTGCCATCTGTTA+TGG | + | chr6_1:4865732-4865751 | Msa0870460:intron | 45.0% | |
| TCATCCATAACAGATGGCAG+TGG | - | chr6_1:4865739-4865758 | None:intergenic | 45.0% | |
| !! | TGGTTTGGGTTGAAGGAGTT+AGG | + | chr6_1:4865771-4865790 | Msa0870460:intron | 45.0% |
| !! | TTTGGGTTGAAGGAGTTAGG+TGG | + | chr6_1:4865774-4865793 | Msa0870460:intron | 45.0% |
| CAACTACCCTAAGCGTGTTT+AGG | - | chr6_1:4866226-4866245 | None:intergenic | 45.0% | |
| TTAGGGTAGTTGTGCATGTG+TGG | + | chr6_1:4866234-4866253 | Msa0870460:intron | 45.0% | |
| TAGAACACGACAGGGGAATT+CGG | + | chr6_1:4866503-4866522 | Msa0870460:intron | 45.0% | |
| GGGAATTCGGAACAATTTGC+TGG | + | chr6_1:4866516-4866535 | Msa0870460:intron | 45.0% | |
| TCGCTCTTTCGATCCTGATA+TGG | + | chr6_1:4866546-4866565 | Msa0870460:intron | 45.0% | |
| ! | TCGTGAGGCATTACCATATC+AGG | - | chr6_1:4866562-4866581 | None:intergenic | 45.0% |
| AACAGAAGTCATGACTCGTG+AGG | - | chr6_1:4866577-4866596 | None:intergenic | 45.0% | |
| GTTGCAGCACTATGACTTAG+TGG | + | chr6_1:4866632-4866651 | Msa0870460:intron | 45.0% | |
| !! | GGGGTGTTGAAGAGAAAAAG+AGG | - | chr6_1:4867614-4867633 | None:intergenic | 45.0% |
| AGGGGGAAAAATGGGGATTT+GGG | - | chr6_1:4867634-4867653 | None:intergenic | 45.0% | |
| AAGGGGGAAAAATGGGGATT+TGG | - | chr6_1:4867635-4867654 | None:intergenic | 45.0% | |
| GTGATGCGTGAGAGGATGAA+GGG | - | chr6_1:4862687-4862706 | None:intergenic | 50.0% | |
| !! | AGATGGGTGAGATGGGTTGT+TGG | - | chr6_1:4862709-4862728 | None:intergenic | 50.0% |
| TGGTGAAGAGAAAGGGTCGA+CGG | - | chr6_1:4862785-4862804 | None:intergenic | 50.0% | |
| GCAGGATGTGGTGAAGAGAA+AGG | - | chr6_1:4862793-4862812 | None:intergenic | 50.0% | |
| CGGACACACTTCGATCAGAA+GGG | - | chr6_1:4863440-4863459 | None:intergenic | 50.0% | |
| CCTTCTGATCGAAGTGTGTC+CGG | + | chr6_1:4863438-4863457 | Msa0870460:intron | 50.0% | |
| AGAGTTCGAACATTGGGCAG+AGG | + | chr6_1:4864096-4864115 | Msa0870460:intron | 50.0% | |
| AGTGGAGTGTGGAGGATACT+TGG | + | chr6_1:4864163-4864182 | Msa0870460:intron | 50.0% | |
| ! | TTTTCCTACCAGTCCCCACT+GGG | - | chr6_1:4864521-4864540 | None:intergenic | 50.0% |
| ! | ATTTTCCTACCAGTCCCCAC+TGG | - | chr6_1:4864522-4864541 | None:intergenic | 50.0% |
| ! | AGTGGGGACTGGTAGGAAAA+TGG | + | chr6_1:4864521-4864540 | Msa0870460:intron | 50.0% |
| ! | GTGGGGACTGGTAGGAAAAT+GGG | + | chr6_1:4864522-4864541 | Msa0870460:intron | 50.0% |
| CTGAAATTGGAGAGGGATGC+AGG | + | chr6_1:4864642-4864661 | Msa0870460:intron | 50.0% | |
| CAATAGTGCGGCAATGGTGT+GGG | + | chr6_1:4864669-4864688 | Msa0870460:intron | 50.0% | |
| TGTTGCACTATCGTCACCGT+AGG | - | chr6_1:4864727-4864746 | None:intergenic | 50.0% | |
| TGACGATAGTGCAACAGTGC+TGG | + | chr6_1:4864731-4864750 | Msa0870460:intron | 50.0% | |
| TGTCACCAAATGCATGCGCT+TGG | + | chr6_1:4864857-4864876 | Msa0870460:intron | 50.0% | |
| TGACACCAAGCGCATGCATT+TGG | - | chr6_1:4864865-4864884 | None:intergenic | 50.0% | |
| GATGTCCTTGACGAGGAATC+TGG | + | chr6_1:4865118-4865137 | Msa0870460:CDS | 50.0% | |
| !! | GGCGGATTGTGAAACACCTT+TGG | + | chr6_1:4865163-4865182 | Msa0870460:CDS | 50.0% |
| AAGGGTGGTGAAGAGGAACA+TGG | + | chr6_1:4865200-4865219 | Msa0870460:CDS | 50.0% | |
| AGGGTGGTGAAGAGGAACAT+GGG | + | chr6_1:4865201-4865220 | Msa0870460:CDS | 50.0% | |
| GGAACATGGGGAAACTGAGA+AGG | + | chr6_1:4865214-4865233 | Msa0870460:CDS | 50.0% | |
| ! | TAAGACGCCATAAAGCGCCA+TGG | + | chr6_1:4865665-4865684 | Msa0870460:intron | 50.0% |
| GCCTACCATCCTTCACAAGT+AGG | + | chr6_1:4865689-4865708 | Msa0870460:intron | 50.0% | |
| GCCTACTTGTGAAGGATGGT+AGG | - | chr6_1:4865693-4865712 | None:intergenic | 50.0% | |
| TGTGGCCTACTTGTGAAGGA+TGG | - | chr6_1:4865697-4865716 | None:intergenic | 50.0% | |
| !! | ACTACGCTGGTTTGGGTTGA+AGG | + | chr6_1:4865764-4865783 | Msa0870460:intron | 50.0% |
| ! | CACTGCGAAGAGCATAGAGA+TGG | - | chr6_1:4865940-4865959 | None:intergenic | 50.0% |
| ! | GCCCCTCCTTAGGCTTTTAT+AGG | - | chr6_1:4866266-4866285 | None:intergenic | 50.0% |
| TCCTCCACTTCCTCTGATGA+CGG | - | chr6_1:4866918-4866937 | None:intergenic | 50.0% | |
| ! | TAGAGCTAGCTTCCTCGACA+AGG | - | chr6_1:4866980-4866999 | None:intergenic | 50.0% |
| GACTATCACCAGGACGATGA+TGG | + | chr6_1:4867032-4867051 | Msa0870460:CDS | 50.0% | |
| ACTCATCACCATCATCGTCC+TGG | - | chr6_1:4867043-4867062 | None:intergenic | 50.0% | |
| TGCTAGGTAATCGCGAGAAG+TGG | - | chr6_1:4867081-4867100 | None:intergenic | 50.0% | |
| GGGGGAAAAATGGGGATTTG+GGG | - | chr6_1:4867633-4867652 | None:intergenic | 50.0% | |
| GGTGATGCGTGAGAGGATGA+AGG | - | chr6_1:4862688-4862707 | None:intergenic | 55.0% | |
| !! | GGTTGTTGGTGATGCGTGAG+AGG | - | chr6_1:4862695-4862714 | None:intergenic | 55.0% |
| GGTGGAGAGATGGGTGAGAT+GGG | - | chr6_1:4862716-4862735 | None:intergenic | 55.0% | |
| TGGTGGAGAGATGGGTGAGA+TGG | - | chr6_1:4862717-4862736 | None:intergenic | 55.0% | |
| GGAAGAAGAGAGAGGGGAGA+GGG | - | chr6_1:4862740-4862759 | None:intergenic | 55.0% | |
| AGGAAGAAGAGAGAGGGGAG+AGG | - | chr6_1:4862741-4862760 | None:intergenic | 55.0% | |
| TGAAGAGAAAGGGTCGACGG+TGG | - | chr6_1:4862782-4862801 | None:intergenic | 55.0% | |
| ACATCCTGCCACCACGTTGA+CGG | + | chr6_1:4862804-4862823 | Msa0870460:CDS | 55.0% | |
| CACTGTGAAGCCACGGTTGA+AGG | - | chr6_1:4862859-4862878 | None:intergenic | 55.0% | |
| CCGGACACACTTCGATCAGA+AGG | - | chr6_1:4863441-4863460 | None:intergenic | 55.0% | |
| TTTCCTACCAGTCCCCACTG+GGG | - | chr6_1:4864520-4864539 | None:intergenic | 55.0% | |
| ! | GATGCAGGAGCGCAATAGTG+CGG | + | chr6_1:4864657-4864676 | Msa0870460:intron | 55.0% |
| GCAATAGTGCGGCAATGGTG+TGG | + | chr6_1:4864668-4864687 | Msa0870460:intron | 55.0% | |
| ACTGGTGCACTACCGTCAAC+AGG | - | chr6_1:4864783-4864802 | None:intergenic | 55.0% | |
| GAGAGTTTGGAGGTGAAGGG+TGG | + | chr6_1:4865185-4865204 | Msa0870460:CDS | 55.0% | |
| GGGTGGTGAAGAGGAACATG+GGG | + | chr6_1:4865202-4865221 | Msa0870460:CDS | 55.0% | |
| ! | CTTTGGAGATTTGCCGCCTC+AGG | + | chr6_1:4865298-4865317 | Msa0870460:CDS | 55.0% |
| GTAGGCACCATGGCGCTTTA+TGG | - | chr6_1:4865675-4865694 | None:intergenic | 55.0% | |
| GTGAAGGATGGTAGGCACCA+TGG | - | chr6_1:4865685-4865704 | None:intergenic | 55.0% | |
| TCGCTGTGGCCTACTTGTGA+AGG | - | chr6_1:4865701-4865720 | None:intergenic | 55.0% | |
| GGCTCAGACACGCACAAACA+CGG | - | chr6_1:4866157-4866176 | None:intergenic | 55.0% | |
| !! | AAAGCCTAAGGAGGGGCGTT+TGG | + | chr6_1:4866269-4866288 | Msa0870460:intron | 55.0% |
| GGAGTTGAATGCCCAGAAGC+AGG | + | chr6_1:4866468-4866487 | Msa0870460:intron | 55.0% | |
| AATGTCTCGGCCGTCATCAG+AGG | + | chr6_1:4866905-4866924 | Msa0870460:CDS | 55.0% | |
| !! | GGAGAGGGTGGTGGAGAGAT+GGG | - | chr6_1:4862725-4862744 | None:intergenic | 60.0% |
| AGAAGAGAGAGGGGAGAGGG+TGG | - | chr6_1:4862737-4862756 | None:intergenic | 60.0% | |
| GGCGGAGGAAGAAGAGAGAG+GGG | - | chr6_1:4862746-4862765 | None:intergenic | 60.0% | |
| CGGCGGAGGAAGAAGAGAGA+GGG | - | chr6_1:4862747-4862766 | None:intergenic | 60.0% | |
| ACGGCGGAGGAAGAAGAGAG+AGG | - | chr6_1:4862748-4862767 | None:intergenic | 60.0% | |
| ! | GACGGTGGCGATGGTGATGA+CGG | - | chr6_1:4862767-4862786 | None:intergenic | 60.0% |
| GTCAACGTGGTGGCAGGATG+TGG | - | chr6_1:4862805-4862824 | None:intergenic | 60.0% | |
| CAACGTCGTCTCCGTCAACG+TGG | - | chr6_1:4862818-4862837 | None:intergenic | 60.0% | |
| AGGAAGCTAGGCTACCCCAG+TGG | + | chr6_1:4864503-4864522 | Msa0870460:intron | 60.0% | |
| GGAAGCTAGGCTACCCCAGT+GGG | + | chr6_1:4864504-4864523 | Msa0870460:intron | 60.0% | |
| GAAGCTAGGCTACCCCAGTG+GGG | + | chr6_1:4864505-4864524 | Msa0870460:intron | 60.0% | |
| GGACACCCCGAGTGTGATGT+TGG | + | chr6_1:4864568-4864587 | Msa0870460:intron | 60.0% | |
| CTCGGCCAACATCACACTCG+GGG | - | chr6_1:4864576-4864595 | None:intergenic | 60.0% | |
| CCTCGGCCAACATCACACTC+GGG | - | chr6_1:4864577-4864596 | None:intergenic | 60.0% | |
| GCCTCGGCCAACATCACACT+CGG | - | chr6_1:4864578-4864597 | None:intergenic | 60.0% | |
| GTGTGATGTTGGCCGAGGCT+TGG | + | chr6_1:4864579-4864598 | Msa0870460:intron | 60.0% | |
| CATTCCAACCGGCCAAGCCT+CGG | - | chr6_1:4864594-4864613 | None:intergenic | 60.0% | |
| GGAGCGCAATAGTGCGGCAA+TGG | + | chr6_1:4864663-4864682 | Msa0870460:intron | 60.0% | |
| AGTGCGGCAATGGTGTGGGA+TGG | + | chr6_1:4864673-4864692 | Msa0870460:intron | 60.0% | |
| GCTGGAATGGCACTGTGACG+AGG | + | chr6_1:4864749-4864768 | Msa0870460:intron | 60.0% | |
| GTCACATGCGGATCAAGGGG+CGG | + | chr6_1:4865145-4865164 | Msa0870460:CDS | 60.0% | |
| GGAGGTGAAGGGTGGTGAAG+AGG | + | chr6_1:4865193-4865212 | Msa0870460:CDS | 60.0% | |
| TTGCAGCAGCAGTAGTCGCG+CGG | + | chr6_1:4865271-4865290 | Msa0870460:CDS | 60.0% | |
| AGTAGTCGCGCGGGAGTCTT+TGG | + | chr6_1:4865281-4865300 | Msa0870460:CDS | 60.0% | |
| GCTTCCAAACGCCCCTCCTT+AGG | - | chr6_1:4866276-4866295 | None:intergenic | 60.0% | |
| TCGGCCGTCATCAGAGGAAG+TGG | + | chr6_1:4866911-4866930 | Msa0870460:CDS | 60.0% | |
| GCCGTCATCAGAGGAAGTGG+AGG | + | chr6_1:4866914-4866933 | Msa0870460:CDS | 60.0% | |
| !! | GGGAGAGGGTGGTGGAGAGA+TGG | - | chr6_1:4862726-4862745 | None:intergenic | 65.0% |
| AGAGAGAGGGGAGAGGGTGG+TGG | - | chr6_1:4862734-4862753 | None:intergenic | 65.0% | |
| !! | GGTGGCGATGGTGATGACGG+CGG | - | chr6_1:4862764-4862783 | None:intergenic | 65.0% |
| GAAAGGGTCGACGGTGGCGA+TGG | - | chr6_1:4862776-4862795 | None:intergenic | 65.0% | |
| GTCTCCGTCAACGTGGTGGC+AGG | - | chr6_1:4862811-4862830 | None:intergenic | 65.0% | |
| CGTCGTCTCCGTCAACGTGG+TGG | - | chr6_1:4862815-4862834 | None:intergenic | 65.0% | |
| TAGGCTACCCCAGTGGGGAC+TGG | + | chr6_1:4864510-4864529 | Msa0870460:intron | 65.0% | |
| ! | CTACCCCAGTGGGGACTGGT+AGG | + | chr6_1:4864514-4864533 | Msa0870460:intron | 65.0% |
| CCCGAGTGTGATGTTGGCCG+AGG | + | chr6_1:4864574-4864593 | Msa0870460:intron | 65.0% | |
| GATGTTGGCCGAGGCTTGGC+CGG | + | chr6_1:4864583-4864602 | Msa0870460:intron | 65.0% | |
| TGCAGCAGCAGTAGTCGCGC+GGG | + | chr6_1:4865272-4865291 | Msa0870460:CDS | 65.0% | |
| !! | GGCGATGGTGATGACGGCGG+AGG | - | chr6_1:4862761-4862780 | None:intergenic | 70.0% |
| TTGGCCGAGGCTTGGCCGGT+TGG | + | chr6_1:4864587-4864606 | Msa0870460:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 4862440 | 4867849 | 4862440 | ID=Msa0870460;Name=Msa0870460 |
| chr6_1 | mRNA | 4862440 | 4867849 | 4862440 | ID=Msa0870460-mRNA-1;Parent=Msa0870460;Name=Msa0870460-mRNA-1;_AED=0.05;_eAED=0.05;_QI=217|0.66|1|1|1|1|4|272|330 |
| chr6_1 | exon | 4862440 | 4863075 | 4862440 | ID=Msa0870460-mRNA-1:exon:1511;Parent=Msa0870460-mRNA-1 |
| chr6_1 | exon | 4865091 | 4865370 | 4865091 | ID=Msa0870460-mRNA-1:exon:1512;Parent=Msa0870460-mRNA-1 |
| chr6_1 | exon | 4866897 | 4867114 | 4866897 | ID=Msa0870460-mRNA-1:exon:1513;Parent=Msa0870460-mRNA-1 |
| chr6_1 | exon | 4867502 | 4867849 | 4867502 | ID=Msa0870460-mRNA-1:exon:1514;Parent=Msa0870460-mRNA-1 |
| chr6_1 | five_prime_UTR | 4862440 | 4862656 | 4862440 | ID=Msa0870460-mRNA-1:five_prime_utr;Parent=Msa0870460-mRNA-1 |
| chr6_1 | CDS | 4862657 | 4863075 | 4862657 | ID=Msa0870460-mRNA-1:cds;Parent=Msa0870460-mRNA-1 |
| chr6_1 | CDS | 4865091 | 4865370 | 4865091 | ID=Msa0870460-mRNA-1:cds;Parent=Msa0870460-mRNA-1 |
| chr6_1 | CDS | 4866897 | 4867114 | 4866897 | ID=Msa0870460-mRNA-1:cds;Parent=Msa0870460-mRNA-1 |
| chr6_1 | CDS | 4867502 | 4867577 | 4867502 | ID=Msa0870460-mRNA-1:cds;Parent=Msa0870460-mRNA-1 |
| chr6_1 | three_prime_UTR | 4867578 | 4867849 | 4867578 | ID=Msa0870460-mRNA-1:three_prime_utr;Parent=Msa0870460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
