AlfalfaGEDB | Msa0152850

M. sativa cultivar zhongmu-4 / Msa0152850

KEGG: K08235
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009908 GO:0010087 GO:0010154 GO:0016740 GO:0016757 GO:0016758 GO:0016762 GO:0022414 GO:0032501 GO:0032502 GO:0046527 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0080086 GO:0090567 GO:0099402
PFAM: PF00722.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0152850	XP_013466651.1	96.646	328	11	0	1	328	1	328	0.0	669

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0152850	sp\|Q38909\|XTH28_ARATH	65.714	315	106	2	9	321	7	321	1.11e-156	444

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0152850	A0A072VFV6	96.646	328	11	0	1	328	1	328	0.0	669

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0030700	Msa0152850	0.814829	1.262052e-51	-8.615850e-47
Msa0038290	Msa0152850	-0.801048	1.082242e-48	-8.615850e-47
Msa0078120	Msa0152850	0.818884	1.552637e-52	-8.615850e-47
Msa0081270	Msa0152850	0.822790	1.961955e-53	-8.615850e-47
Msa0105410	Msa0152850	0.834277	3.288946e-56	-8.615850e-47
Msa0152850	Msa0217060	0.800645	1.307763e-48	-8.615850e-47
Msa0152850	Msa0220400	-0.813769	2.163970e-51	-8.615850e-47
Msa0152850	Msa0226260	0.801849	7.416506e-49	-8.615850e-47
Msa0152850	Msa0235290	0.810608	1.059224e-50	-8.615850e-47
Msa0152850	Msa0237420	0.808797	2.595738e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0152850	MtrunA17_Chr1g0161951	96.646	328	11	0	1	328	1	328	0.0	669
Msa0152850	MtrunA17_Chr8g0375981	76.299	308	70	2	5	311	5	310	0.0	508
Msa0152850	MtrunA17_Chr5g0410621	57.292	288	118	2	27	309	36	323	2.08e-121	353
Msa0152850	MtrunA17_Chr8g0382041	51.071	280	125	5	27	299	28	302	2.11e-97	291
Msa0152850	MtrunA17_Chr8g0365231	45.956	272	141	1	26	291	39	310	1.05e-83	255
Msa0152850	MtrunA17_Chr4g0028221	43.116	276	142	5	19	291	41	304	1.25e-72	227
Msa0152850	MtrunA17_Chr2g0327411	40.000	300	158	7	6	291	18	309	3.35e-67	213
Msa0152850	MtrunA17_Chr1g0180451	41.825	263	141	5	33	291	40	294	9.75e-66	209
Msa0152850	MtrunA17_Chr7g0264731	40.068	292	160	6	7	291	8	291	5.70e-65	207
Msa0152850	MtrunA17_Chr6g0461761	37.584	298	167	9	4	294	5	290	1.28e-60	196

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0152850	AT1G14720.1	65.714	315	106	2	9	321	7	321	1.13e-157	444
Msa0152850	AT2G01850.1	62.577	326	118	3	1	324	1	324	3.38e-154	436
Msa0152850	AT1G32170.1	55.663	309	130	4	5	310	8	312	1.53e-122	355
Msa0152850	AT4G18990.1	53.289	304	127	3	27	316	34	336	4.33e-111	327
Msa0152850	AT4G18990.2	52.155	232	96	3	99	316	32	262	1.01e-81	249
Msa0152850	AT1G10550.1	43.706	286	149	2	16	291	26	309	2.49e-81	249
Msa0152850	AT4G13090.1	43.197	294	153	6	6	291	1	288	3.38e-73	228
Msa0152850	AT4G13080.1	40.339	295	165	5	1	291	4	291	6.19e-70	220
Msa0152850	AT3G25050.1	38.488	291	163	6	10	291	6	289	6.29e-66	209
Msa0152850	AT5G13870.2	37.584	298	174	6	1	294	1	290	9.16e-65	206

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Find 89 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGAAGTAACTTTGTTT+TGG	0.306141	1_4:+15828650	None:intergenic
AAAATCAACTTTCCCATGGT+GGG	0.562043	1_4:+15828212	None:intergenic
AAATTTGATCCCGTTACATT+TGG	0.384702	1_4:-15828706	Msa0152850:CDS
AAGAGAACTGAGTCAATGAG+AGG	0.626190	1_4:-15829078	Msa0152850:CDS
AAGCACTAAAATAGCCATGA+AGG	0.555543	1_4:+15831058	None:intergenic
AAGTAAGAGATGAACAGCTT+TGG	0.482296	1_4:+15831215	None:intergenic
AAGTTATGGTCTCCAAACAA+AGG	0.651449	1_4:+15831255	None:intergenic
AATGACTTTACATTTAGTAT+GGG	0.520742	1_4:-15828250	Msa0152850:three_prime_UTR
ACAAGTTGAAAGAATCAAAA+TGG	0.279907	1_4:-15828839	Msa0152850:CDS
ACATAAGAGGCAAAGATTGG+AGG	0.566240	1_4:-15830179	Msa0152850:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAGAAGAATATAACAAGAG+GGG	+	chr1_4:15828244-15828263	None:intergenic	30.0%
GAGAAGAAGAATATAACAAG+AGG	+	chr1_4:15828246-15828265	None:intergenic	30.0%
CAGAATGAATGATCAAGTTA+TGG	+	chr1_4:15828564-15828583	None:intergenic	30.0%
TGACAATTCACTGTAACATT+TGG	+	chr1_4:15828909-15828928	None:intergenic	30.0%
GGTAAAATTAGTGCAATTGA+TGG	+	chr1_4:15829490-15829509	None:intergenic	30.0%
TTTATTCTGCAGTTGTCAAA+TGG	-	chr1_4:15829550-15829569	Msa0152850:intron	30.0%
ATTGGAAGAGAAGAAAGATA+TGG	-	chr1_4:15829682-15829701	Msa0152850:intron	30.0%
GAGAAGAAAGATATGGTTTA+TGG	-	chr1_4:15829689-15829708	Msa0152850:intron	30.0%
GTATATATATCCTTAAAGGG+AGG	-	chr1_4:15830079-15830098	Msa0152850:CDS	30.0%
AACCCACAAGATAAAAAAGT+TGG	-	chr1_4:15830102-15830121	Msa0152850:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	15828209	15831615	15828209	ID=Msa0152850;Name=Msa0152850
chr1_4	mRNA	15828209	15831615	15828209	ID=Msa0152850-mRNA-1;Parent=Msa0152850;Name=Msa0152850-mRNA-1;_AED=0.02;_eAED=0.02;_QI=224\|1\|1\|1\|1\|1\|4\|439\|328
chr1_4	exon	15828209	15829134	15828209	ID=Msa0152850-mRNA-1:exon:6134;Parent=Msa0152850-mRNA-1
chr1_4	exon	15830054	15830262	15830054	ID=Msa0152850-mRNA-1:exon:6133;Parent=Msa0152850-mRNA-1
chr1_4	exon	15831008	15831108	15831008	ID=Msa0152850-mRNA-1:exon:6132;Parent=Msa0152850-mRNA-1
chr1_4	exon	15831202	15831615	15831202	ID=Msa0152850-mRNA-1:exon:6131;Parent=Msa0152850-mRNA-1
chr1_4	five_prime_UTR	15831392	15831615	15831392	ID=Msa0152850-mRNA-1:five_prime_utr;Parent=Msa0152850-mRNA-1
chr1_4	CDS	15831202	15831391	15831202	ID=Msa0152850-mRNA-1:cds;Parent=Msa0152850-mRNA-1
chr1_4	CDS	15831008	15831108	15831008	ID=Msa0152850-mRNA-1:cds;Parent=Msa0152850-mRNA-1
chr1_4	CDS	15830054	15830262	15830054	ID=Msa0152850-mRNA-1:cds;Parent=Msa0152850-mRNA-1
chr1_4	CDS	15828648	15829134	15828648	ID=Msa0152850-mRNA-1:cds;Parent=Msa0152850-mRNA-1
chr1_4	three_prime_UTR	15828209	15828647	15828209	ID=Msa0152850-mRNA-1:three_prime_utr;Parent=Msa0152850-mRNA-1

Gene Sequence

>Msa0152850

ATGGAAAAGATTCATATGATGTTGTTCTTGTTCTGTTTTTTTCTTTTTGTTATGCCTTGTTACTCTGTTTCACCAAGAAATTTTGCTATTATACCTTTTGATGAAGGGTATACACCTTTGTTTGGAGACCATAACTTGATCATTCATTCTGATTCCAAAGCTGTTCATCTCTTACTTGATGAGTCTTCAGGCTCTGGATTTACTTCTCATGATCTTTACCTTCATGGCTATTTTAGTGCTTCCATTAAATTACCTTCTGATTATACTGCTGGAGTTGTGGTTGCATTTTATTTGTCAAATGGTGACATGTATGAGAAGAACCATGATGAAATAGACTTTGAATTTTTGGGAAACATAAGAGGCAAAGATTGGAGGATTCAAACAAATGTTTATGGAAATGGAAGTACAAACATTGGAAGAGAAGAAAGATATGGTTTATGGTTTGATCCTTCTGAGGAATTTCATCAGTATAGTATTCTTTGGACAGATTCTAAGATAATATTTTATGTAGATGATGTTCCTGTCAGAGAAGTAAAGAGAACTGAGTCAATGAGAGGAGATTTTCCATCAAAGGCAATGACTTTGTATTCTACCATATGGGATGCATCTACTTGGGCTACCAATGGAGGAAAATACAAAGTAAACTACAAATATGCACCCTATATTGCTGAATTCTCTGACTTTGTCCTACATGGTTGTGCAGTTGATCCTATTGAGCATGTGACCAAGTGTGACAGTGCTCAAAGTTCAGAAACAGTTCCTTCTGATGTTTCACAAGTTGAAAGAATCAAAATGGAGAACTTTAGGTTCAAGCACATGACATACTCTTACTGTTATGACAAAACCAGATACAAAGTCCCTCTACCGGAGTGTGTGATCGATTCGCGACAAGCTGAAAGGCTGAGAAAATTTGATCCCGTTACATTTGGTAATGGCCGGCACCACCGTGGAAAGAGACACCGCCAAAACAAAGTTACTTCGTTTTAG

Protein sequence

>Msa0152850

MEKIHMMLFLFCFFLFVMPCYSVSPRNFAIIPFDEGYTPLFGDHNLIIHSDSKAVHLLLDESSGSGFTSHDLYLHGYFSASIKLPSDYTAGVVVAFYLSNGDMYEKNHDEIDFEFLGNIRGKDWRIQTNVYGNGSTNIGREERYGLWFDPSEEFHQYSILWTDSKIIFYVDDVPVREVKRTESMRGDFPSKAMTLYSTIWDASTWATNGGKYKVNYKYAPYIAEFSDFVLHGCAVDPIEHVTKCDSAQSSETVPSDVSQVERIKMENFRFKHMTYSYCYDKTRYKVPLPECVIDSRQAERLRKFDPVTFGNGRHHRGKRHRQNKVTSF*