Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152850 | XP_013466651.1 | 96.646 | 328 | 11 | 0 | 1 | 328 | 1 | 328 | 0.0 | 669 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152850 | sp|Q38909|XTH28_ARATH | 65.714 | 315 | 106 | 2 | 9 | 321 | 7 | 321 | 1.11e-156 | 444 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152850 | A0A072VFV6 | 96.646 | 328 | 11 | 0 | 1 | 328 | 1 | 328 | 0.0 | 669 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030700 | Msa0152850 | 0.814829 | 1.262052e-51 | -8.615850e-47 |
| Msa0038290 | Msa0152850 | -0.801048 | 1.082242e-48 | -8.615850e-47 |
| Msa0078120 | Msa0152850 | 0.818884 | 1.552637e-52 | -8.615850e-47 |
| Msa0081270 | Msa0152850 | 0.822790 | 1.961955e-53 | -8.615850e-47 |
| Msa0105410 | Msa0152850 | 0.834277 | 3.288946e-56 | -8.615850e-47 |
| Msa0152850 | Msa0217060 | 0.800645 | 1.307763e-48 | -8.615850e-47 |
| Msa0152850 | Msa0220400 | -0.813769 | 2.163970e-51 | -8.615850e-47 |
| Msa0152850 | Msa0226260 | 0.801849 | 7.416506e-49 | -8.615850e-47 |
| Msa0152850 | Msa0235290 | 0.810608 | 1.059224e-50 | -8.615850e-47 |
| Msa0152850 | Msa0237420 | 0.808797 | 2.595738e-50 | -8.615850e-47 |
| Msa0152850 | Msa0269170 | -0.800713 | 1.266527e-48 | -8.615850e-47 |
| Msa0152850 | Msa0308470 | 0.825363 | 4.883140e-54 | -8.615850e-47 |
| Msa0152850 | Msa0313900 | 0.808675 | 2.756373e-50 | -8.615850e-47 |
| Msa0152850 | Msa0365210 | 0.811455 | 6.940715e-51 | -8.615850e-47 |
| Msa0152850 | Msa0372300 | 0.824715 | 6.946039e-54 | -8.615850e-47 |
| Msa0152850 | Msa0375330 | -0.807965 | 3.906837e-50 | -8.615850e-47 |
| Msa0152850 | Msa0385830 | 0.801800 | 7.588604e-49 | -8.615850e-47 |
| Msa0152850 | Msa0402070 | -0.835947 | 1.247451e-56 | -8.615850e-47 |
| Msa0152850 | Msa0405470 | -0.800764 | 1.236899e-48 | -8.615850e-47 |
| Msa0152850 | Msa0453040 | 0.800968 | 1.123373e-48 | -8.615850e-47 |
| Msa0152850 | Msa0465500 | 0.825609 | 4.270199e-54 | -8.615850e-47 |
| Msa0152850 | Msa0543560 | 0.811771 | 5.924907e-51 | -8.615850e-47 |
| Msa0152850 | Msa0599420 | 0.815679 | 8.170599e-52 | -8.615850e-47 |
| Msa0152850 | Msa0610690 | 0.812103 | 5.016584e-51 | -8.615850e-47 |
| Msa0152850 | Msa0657710 | 0.817047 | 4.037952e-52 | -8.615850e-47 |
| Msa0152850 | Msa0657720 | 0.854640 | 1.075592e-61 | -8.615850e-47 |
| Msa0152850 | Msa0678380 | 0.804741 | 1.867630e-49 | -8.615850e-47 |
| Msa0152850 | Msa0702410 | 0.823948 | 1.052274e-53 | -8.615850e-47 |
| Msa0152850 | Msa0702720 | 0.806079 | 9.792782e-50 | -8.615850e-47 |
| Msa0152850 | Msa0702790 | 0.849675 | 2.777028e-60 | -8.615850e-47 |
| Msa0152850 | Msa0702800 | 0.815384 | 9.501861e-52 | -8.615850e-47 |
| Msa0152850 | Msa0752450 | 0.802143 | 6.453013e-49 | -8.615850e-47 |
| Msa0152850 | Msa0828950 | 0.854815 | 9.571174e-62 | -8.615850e-47 |
| Msa0152850 | Msa0828960 | 0.817590 | 3.047779e-52 | -8.615850e-47 |
| Msa0152850 | Msa0833950 | -0.806885 | 6.620425e-50 | -8.615850e-47 |
| Msa0152850 | Msa0855870 | 0.816609 | 5.061992e-52 | -8.615850e-47 |
| Msa0152850 | Msa0862480 | -0.808376 | 3.193201e-50 | -8.615850e-47 |
| Msa0152850 | Msa0879930 | 0.800888 | 1.166482e-48 | -8.615850e-47 |
| Msa0152850 | Msa0972680 | 0.809419 | 1.909798e-50 | -8.615850e-47 |
| Msa0152850 | Msa1022420 | 0.800644 | 1.308551e-48 | -8.615850e-47 |
| Msa0152850 | Msa1044250 | 0.830607 | 2.670370e-55 | -8.615850e-47 |
| Msa0152850 | Msa1106590 | 0.806438 | 8.225819e-50 | -8.615850e-47 |
| Msa0152850 | Msa1184230 | 0.845950 | 2.949764e-59 | -8.615850e-47 |
| Msa0152850 | Msa1202800 | 0.820456 | 6.794155e-53 | -8.615850e-47 |
| Msa0152850 | Msa1207430 | 0.800026 | 1.748423e-48 | -8.615850e-47 |
| Msa0152850 | Msa1207920 | -0.819133 | 1.363027e-52 | -8.615850e-47 |
| Msa0152850 | Msa1228040 | 0.804175 | 2.450731e-49 | -8.615850e-47 |
| Msa0152850 | Msa1238660 | 0.808235 | 3.421192e-50 | -8.615850e-47 |
| Msa0152850 | Msa1255210 | 0.827539 | 1.479465e-54 | -8.615850e-47 |
| Msa0152850 | Msa1283930 | 0.800843 | 1.191574e-48 | -8.615850e-47 |
| Msa0152850 | Msa1285360 | -0.810644 | 1.040362e-50 | -8.615850e-47 |
| Msa0152850 | Msa1295650 | 0.823882 | 1.090418e-53 | -8.615850e-47 |
| Msa0152850 | Msa1319560 | 0.806394 | 8.402027e-50 | -8.615850e-47 |
| Msa0152850 | Msa1341840 | 0.812952 | 3.272173e-51 | -8.615850e-47 |
| Msa0152850 | Msa1345100 | 0.818511 | 1.886616e-52 | -8.615850e-47 |
| Msa0152850 | Msa1348170 | -0.810822 | 9.523069e-51 | -8.615850e-47 |
| Msa0152850 | Msa1364350 | -0.829358 | 5.384018e-55 | -8.615850e-47 |
| Msa0152850 | Msa1412730 | 0.822324 | 2.518194e-53 | -8.615850e-47 |
| Msa0152850 | Msa1416440 | 0.822066 | 2.889568e-53 | -8.615850e-47 |
| Msa0152850 | Msa1452710 | 0.814680 | 1.361897e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152850 | MtrunA17_Chr1g0161951 | 96.646 | 328 | 11 | 0 | 1 | 328 | 1 | 328 | 0.0 | 669 |
| Msa0152850 | MtrunA17_Chr8g0375981 | 76.299 | 308 | 70 | 2 | 5 | 311 | 5 | 310 | 0.0 | 508 |
| Msa0152850 | MtrunA17_Chr5g0410621 | 57.292 | 288 | 118 | 2 | 27 | 309 | 36 | 323 | 2.08e-121 | 353 |
| Msa0152850 | MtrunA17_Chr8g0382041 | 51.071 | 280 | 125 | 5 | 27 | 299 | 28 | 302 | 2.11e-97 | 291 |
| Msa0152850 | MtrunA17_Chr8g0365231 | 45.956 | 272 | 141 | 1 | 26 | 291 | 39 | 310 | 1.05e-83 | 255 |
| Msa0152850 | MtrunA17_Chr4g0028221 | 43.116 | 276 | 142 | 5 | 19 | 291 | 41 | 304 | 1.25e-72 | 227 |
| Msa0152850 | MtrunA17_Chr2g0327411 | 40.000 | 300 | 158 | 7 | 6 | 291 | 18 | 309 | 3.35e-67 | 213 |
| Msa0152850 | MtrunA17_Chr1g0180451 | 41.825 | 263 | 141 | 5 | 33 | 291 | 40 | 294 | 9.75e-66 | 209 |
| Msa0152850 | MtrunA17_Chr7g0264731 | 40.068 | 292 | 160 | 6 | 7 | 291 | 8 | 291 | 5.70e-65 | 207 |
| Msa0152850 | MtrunA17_Chr6g0461761 | 37.584 | 298 | 167 | 9 | 4 | 294 | 5 | 290 | 1.28e-60 | 196 |
| Msa0152850 | MtrunA17_Chr7g0252601 | 37.770 | 278 | 160 | 6 | 22 | 294 | 21 | 290 | 1.70e-59 | 192 |
| Msa0152850 | MtrunA17_Chr4g0054451 | 37.370 | 289 | 163 | 7 | 6 | 292 | 18 | 290 | 1.03e-57 | 188 |
| Msa0152850 | MtrunA17_Chr6g0461731 | 36.644 | 292 | 167 | 7 | 12 | 294 | 31 | 313 | 1.10e-57 | 189 |
| Msa0152850 | MtrunA17_Chr7g0252621 | 36.395 | 294 | 174 | 6 | 8 | 295 | 5 | 291 | 1.11e-57 | 188 |
| Msa0152850 | MtrunA17_Chr7g0252631 | 36.897 | 290 | 170 | 6 | 11 | 294 | 8 | 290 | 4.43e-57 | 186 |
| Msa0152850 | MtrunA17_Chr4g0023961 | 37.037 | 297 | 164 | 8 | 7 | 292 | 5 | 289 | 6.50e-57 | 186 |
| Msa0152850 | MtrunA17_Chr4g0054431 | 41.975 | 243 | 134 | 6 | 52 | 292 | 51 | 288 | 6.94e-57 | 186 |
| Msa0152850 | MtrunA17_Chr2g0323161 | 36.755 | 302 | 166 | 8 | 1 | 292 | 1 | 287 | 2.01e-56 | 184 |
| Msa0152850 | MtrunA17_Chr5g0443391 | 37.193 | 285 | 158 | 8 | 14 | 291 | 8 | 278 | 7.80e-56 | 183 |
| Msa0152850 | MtrunA17_Chr8g0340001 | 40.171 | 234 | 132 | 4 | 61 | 292 | 5 | 232 | 2.30e-55 | 180 |
| Msa0152850 | MtrunA17_Chr4g0072611 | 40.310 | 258 | 137 | 8 | 41 | 291 | 33 | 280 | 4.78e-54 | 178 |
| Msa0152850 | MtrunA17_Chr4g0071341 | 37.358 | 265 | 156 | 6 | 33 | 293 | 25 | 283 | 5.18e-54 | 178 |
| Msa0152850 | MtrunA17_Chr1g0206681 | 34.448 | 299 | 184 | 8 | 1 | 293 | 1 | 293 | 6.37e-54 | 178 |
| Msa0152850 | MtrunA17_Chr1g0206081 | 35.227 | 264 | 166 | 4 | 33 | 293 | 35 | 296 | 1.43e-53 | 177 |
| Msa0152850 | MtrunA17_Chr7g0258911 | 37.500 | 256 | 151 | 5 | 41 | 293 | 32 | 281 | 6.15e-52 | 172 |
| Msa0152850 | MtrunA17_Chr4g0072601 | 37.500 | 256 | 151 | 5 | 41 | 293 | 36 | 285 | 1.54e-51 | 172 |
| Msa0152850 | MtrunA17_Chr2g0303861 | 33.818 | 275 | 167 | 8 | 7 | 278 | 6 | 268 | 7.26e-51 | 170 |
| Msa0152850 | MtrunA17_Chr4g0072671 | 37.828 | 267 | 153 | 7 | 33 | 292 | 26 | 286 | 2.87e-50 | 169 |
| Msa0152850 | MtrunA17_Chr3g0096651 | 36.842 | 266 | 158 | 6 | 33 | 296 | 30 | 287 | 3.08e-50 | 169 |
| Msa0152850 | MtrunA17_Chr3g0122021 | 37.165 | 261 | 151 | 6 | 33 | 291 | 28 | 277 | 2.48e-49 | 166 |
| Msa0152850 | MtrunA17_Chr3g0122031 | 37.165 | 261 | 151 | 6 | 33 | 291 | 28 | 277 | 2.53e-49 | 166 |
| Msa0152850 | MtrunA17_Chr6g0486581 | 33.103 | 290 | 173 | 9 | 10 | 291 | 7 | 283 | 4.52e-49 | 166 |
| Msa0152850 | MtrunA17_Chr2g0299061 | 36.398 | 261 | 150 | 6 | 41 | 292 | 34 | 287 | 2.77e-48 | 164 |
| Msa0152850 | MtrunA17_Chr2g0303721 | 32.082 | 293 | 169 | 10 | 6 | 291 | 1 | 270 | 2.44e-46 | 158 |
| Msa0152850 | MtrunA17_Chr8g0377841 | 35.632 | 261 | 156 | 5 | 33 | 291 | 31 | 281 | 2.67e-46 | 158 |
| Msa0152850 | MtrunA17_Chr8g0389641 | 43.017 | 179 | 96 | 3 | 33 | 210 | 29 | 202 | 1.51e-43 | 150 |
| Msa0152850 | MtrunA17_Chr7g0235541 | 37.674 | 215 | 123 | 6 | 82 | 293 | 3 | 209 | 9.89e-42 | 144 |
| Msa0152850 | MtrunA17_Chr4g0072681 | 35.714 | 224 | 130 | 6 | 76 | 291 | 26 | 243 | 3.72e-41 | 144 |
| Msa0152850 | MtrunA17_Chr8g0390201 | 35.789 | 190 | 114 | 5 | 108 | 291 | 22 | 209 | 2.15e-35 | 127 |
| Msa0152850 | MtrunA17_Chr8g0350711 | 36.788 | 193 | 108 | 6 | 37 | 228 | 40 | 219 | 2.07e-21 | 90.9 |
| Msa0152850 | MtrunA17_Chr4g0072641 | 29.134 | 127 | 74 | 3 | 168 | 292 | 37 | 149 | 6.89e-13 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0152850 | AT1G14720.1 | 65.714 | 315 | 106 | 2 | 9 | 321 | 7 | 321 | 1.13e-157 | 444 |
| Msa0152850 | AT2G01850.1 | 62.577 | 326 | 118 | 3 | 1 | 324 | 1 | 324 | 3.38e-154 | 436 |
| Msa0152850 | AT1G32170.1 | 55.663 | 309 | 130 | 4 | 5 | 310 | 8 | 312 | 1.53e-122 | 355 |
| Msa0152850 | AT4G18990.1 | 53.289 | 304 | 127 | 3 | 27 | 316 | 34 | 336 | 4.33e-111 | 327 |
| Msa0152850 | AT4G18990.2 | 52.155 | 232 | 96 | 3 | 99 | 316 | 32 | 262 | 1.01e-81 | 249 |
| Msa0152850 | AT1G10550.1 | 43.706 | 286 | 149 | 2 | 16 | 291 | 26 | 309 | 2.49e-81 | 249 |
| Msa0152850 | AT4G13090.1 | 43.197 | 294 | 153 | 6 | 6 | 291 | 1 | 288 | 3.38e-73 | 228 |
| Msa0152850 | AT4G13080.1 | 40.339 | 295 | 165 | 5 | 1 | 291 | 4 | 291 | 6.19e-70 | 220 |
| Msa0152850 | AT3G25050.1 | 38.488 | 291 | 163 | 6 | 10 | 291 | 6 | 289 | 6.29e-66 | 209 |
| Msa0152850 | AT5G13870.2 | 37.584 | 298 | 174 | 6 | 1 | 294 | 1 | 290 | 9.16e-65 | 206 |
| Msa0152850 | AT5G13870.1 | 37.584 | 298 | 174 | 6 | 1 | 294 | 1 | 290 | 9.16e-65 | 206 |
| Msa0152850 | AT5G13870.3 | 37.584 | 298 | 174 | 6 | 1 | 294 | 1 | 290 | 9.16e-65 | 206 |
| Msa0152850 | AT2G06850.1 | 40.476 | 294 | 159 | 8 | 6 | 294 | 11 | 293 | 2.33e-63 | 203 |
| Msa0152850 | AT3G44990.1 | 40.304 | 263 | 147 | 4 | 32 | 291 | 38 | 293 | 2.48e-63 | 203 |
| Msa0152850 | AT2G36870.1 | 40.840 | 262 | 145 | 4 | 33 | 291 | 43 | 297 | 4.96e-63 | 202 |
| Msa0152850 | AT5G65730.1 | 38.889 | 288 | 162 | 6 | 8 | 291 | 13 | 290 | 3.16e-62 | 200 |
| Msa0152850 | AT4G37800.1 | 39.924 | 263 | 147 | 6 | 33 | 291 | 34 | 289 | 4.71e-61 | 197 |
| Msa0152850 | AT4G03210.1 | 37.979 | 287 | 165 | 6 | 10 | 291 | 6 | 284 | 5.02e-59 | 192 |
| Msa0152850 | AT4G03210.2 | 41.126 | 231 | 127 | 4 | 65 | 291 | 31 | 256 | 1.25e-55 | 182 |
| Msa0152850 | AT2G06850.2 | 42.797 | 236 | 124 | 5 | 63 | 294 | 5 | 233 | 1.50e-55 | 181 |
| Msa0152850 | AT1G11545.1 | 35.117 | 299 | 167 | 7 | 8 | 293 | 17 | 301 | 6.59e-55 | 181 |
| Msa0152850 | AT4G25810.1 | 39.382 | 259 | 142 | 8 | 41 | 292 | 34 | 284 | 1.55e-53 | 177 |
| Msa0152850 | AT5G57560.1 | 35.959 | 292 | 169 | 7 | 7 | 292 | 3 | 282 | 1.62e-52 | 174 |
| Msa0152850 | AT5G57550.1 | 37.786 | 262 | 151 | 7 | 33 | 291 | 30 | 282 | 7.31e-51 | 170 |
| Msa0152850 | AT3G23730.1 | 36.981 | 265 | 156 | 5 | 33 | 291 | 27 | 286 | 8.21e-51 | 171 |
| Msa0152850 | AT4G30270.1 | 35.294 | 289 | 159 | 7 | 10 | 295 | 6 | 269 | 2.51e-50 | 169 |
| Msa0152850 | AT4G14130.1 | 37.405 | 262 | 155 | 6 | 33 | 291 | 29 | 284 | 2.35e-49 | 167 |
| Msa0152850 | AT2G18800.1 | 34.965 | 286 | 158 | 6 | 33 | 299 | 28 | 304 | 6.53e-49 | 166 |
| Msa0152850 | AT5G48070.1 | 37.500 | 248 | 142 | 7 | 47 | 291 | 44 | 281 | 1.16e-48 | 164 |
| Msa0152850 | AT2G14620.1 | 36.255 | 251 | 145 | 8 | 50 | 293 | 54 | 296 | 2.03e-48 | 164 |
| Msa0152850 | AT4G28850.1 | 33.916 | 286 | 174 | 9 | 14 | 291 | 9 | 287 | 2.08e-48 | 164 |
| Msa0152850 | AT5G57530.1 | 35.926 | 270 | 162 | 7 | 29 | 294 | 23 | 285 | 1.26e-47 | 162 |
| Msa0152850 | AT4G30290.1 | 39.655 | 232 | 125 | 7 | 64 | 291 | 56 | 276 | 2.88e-47 | 161 |
| Msa0152850 | AT4G30280.1 | 38.528 | 231 | 129 | 6 | 64 | 291 | 61 | 281 | 3.06e-47 | 161 |
| Msa0152850 | AT5G57540.1 | 35.338 | 266 | 161 | 7 | 33 | 294 | 26 | 284 | 7.50e-47 | 160 |
| Msa0152850 | AT1G65310.1 | 38.281 | 256 | 144 | 7 | 41 | 292 | 37 | 282 | 4.84e-46 | 158 |
| Msa0152850 | AT1G65310.2 | 38.281 | 256 | 144 | 7 | 41 | 292 | 59 | 304 | 6.77e-46 | 158 |
| Msa0152850 | AT2G14620.2 | 36.287 | 237 | 136 | 8 | 64 | 293 | 18 | 246 | 3.07e-45 | 155 |
| Msa0152850 | AT2G14620.3 | 36.404 | 228 | 130 | 8 | 73 | 293 | 16 | 235 | 2.55e-43 | 149 |
| Msa0152850 | AT4G25820.1 | 34.091 | 264 | 165 | 5 | 33 | 293 | 30 | 287 | 4.00e-42 | 148 |
| Msa0152850 | AT3G48580.1 | 32.453 | 265 | 156 | 11 | 29 | 291 | 30 | 273 | 7.40e-36 | 131 |
| Msa0152850 | AT2G36870.2 | 45.652 | 138 | 70 | 2 | 33 | 167 | 43 | 178 | 9.54e-33 | 120 |
| Msa0152850 | AT3G48580.3 | 33.333 | 231 | 132 | 10 | 63 | 291 | 4 | 214 | 1.03e-31 | 118 |
| Msa0152850 | AT3G48580.2 | 29.434 | 265 | 144 | 12 | 29 | 291 | 30 | 253 | 1.02e-22 | 95.5 |
Find 89 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGATTCAAACAAATGTTTA+TGG | 0.147337 | 1_4:-15830159 | Msa0152850:CDS |
| GAGAAGAAAGATATGGTTTA+TGG | 0.194534 | 1_4:-15830113 | Msa0152850:CDS |
| CACCATCTCTTTAGGTTATT+AGG | 0.195008 | 1_4:-15828362 | Msa0152850:three_prime_UTR |
| GAATGACTTTACATTTAGTA+TGG | 0.217966 | 1_4:-15828251 | Msa0152850:three_prime_UTR |
| TTCATCAGTATAGTATTCTT+TGG | 0.249093 | 1_4:-15830071 | Msa0152850:CDS |
| TAATAATCATATAACTATTA+TGG | 0.268777 | 1_4:+15828420 | None:intergenic |
| TCTCATGATCTTTACCTTCA+TGG | 0.270500 | 1_4:-15831072 | Msa0152850:CDS |
| GAATCAAAATGGAGAACTTT+AGG | 0.272268 | 1_4:-15828828 | Msa0152850:CDS |
| ACAAGTTGAAAGAATCAAAA+TGG | 0.279907 | 1_4:-15828839 | Msa0152850:CDS |
| TACAAAGTCATTGCCTTTGA+TGG | 0.283691 | 1_4:+15829048 | None:intergenic |
| CTCTTACTTGATGAGTCTTC+AGG | 0.286306 | 1_4:-15831201 | Msa0152850:intron |
| GTATAGTTCACCATCTCTTT+AGG | 0.293755 | 1_4:-15828370 | Msa0152850:three_prime_UTR |
| CAAACAAATGTTTATGGAAA+TGG | 0.295488 | 1_4:-15830153 | Msa0152850:CDS |
| AAAACGAAGTAACTTTGTTT+TGG | 0.306141 | 1_4:+15828650 | None:intergenic |
| GGTATAATAGCAAAATTTCT+TGG | 0.312439 | 1_4:+15831297 | None:intergenic |
| ATAATCAGAAGGTAATTTAA+TGG | 0.316688 | 1_4:+15831035 | None:intergenic |
| GTTCAACAAAATCAAAATTA+TGG | 0.319332 | 1_4:-15828603 | Msa0152850:three_prime_UTR |
| GTCAGAGAATTCAGCAATAT+AGG | 0.324857 | 1_4:+15828954 | None:intergenic |
| CGGTAGAGGGACTTTGTATC+TGG | 0.344053 | 1_4:+15828768 | None:intergenic |
| GAAGGGTATACACCTTTGTT+TGG | 0.357285 | 1_4:-15831267 | Msa0152850:CDS |
| TGACTTTGTATTCTACCATA+TGG | 0.360868 | 1_4:-15829035 | Msa0152850:CDS |
| CCATATGGGATGCATCTACT+TGG | 0.374925 | 1_4:-15829020 | Msa0152850:CDS |
| AAATTTGATCCCGTTACATT+TGG | 0.384702 | 1_4:-15828706 | Msa0152850:CDS |
| GTCTCTTTCCACGGTGGTGC+CGG | 0.385909 | 1_4:+15828677 | None:intergenic |
| CACTTGGTCACATGCTCAAT+AGG | 0.402506 | 1_4:+15828904 | None:intergenic |
| TTCTCTGACTTTGTCCTACA+TGG | 0.411675 | 1_4:-15828940 | Msa0152850:CDS |
| ATTGGAAGAGAAGAAAGATA+TGG | 0.430520 | 1_4:-15830120 | Msa0152850:CDS |
| GAGAGAAGAGAAAGAAAAGA+AGG | 0.433086 | 1_4:+15831537 | None:intergenic |
| TTACCTTCTGATTATACTGC+TGG | 0.434184 | 1_4:-15831027 | Msa0152850:CDS |
| GACTTTGTATTCTACCATAT+GGG | 0.438803 | 1_4:-15829034 | Msa0152850:CDS |
| TCAGAGAATTCAGCAATATA+GGG | 0.440728 | 1_4:+15828955 | None:intergenic |
| GATCCCGTTACATTTGGTAA+TGG | 0.449715 | 1_4:-15828700 | Msa0152850:CDS |
| TTTATTCTGCAGTTGTCAAA+TGG | 0.450372 | 1_4:-15830252 | Msa0152850:intron |
| CAGAATGAATGATCAAGTTA+TGG | 0.454056 | 1_4:+15831241 | None:intergenic |
| ATATGATTATTAATTAATGC+TGG | 0.455084 | 1_4:-15828409 | Msa0152850:three_prime_UTR |
| GGTGTATACCCTTCATCAAA+AGG | 0.456262 | 1_4:+15831276 | None:intergenic |
| TAGCTTACATATGACACAAA+GGG | 0.472745 | 1_4:+15828280 | None:intergenic |
| GAAACATAAGAGGCAAAGAT+TGG | 0.476196 | 1_4:-15830182 | Msa0152850:CDS |
| CCAAGTAGATGCATCCCATA+TGG | 0.478573 | 1_4:+15829020 | None:intergenic |
| AAGTAAGAGATGAACAGCTT+TGG | 0.482296 | 1_4:+15831215 | None:intergenic |
| TCGATCACACACTCCGGTAG+AGG | 0.485145 | 1_4:+15828754 | None:intergenic |
| GAGAAGAAGAATATAACAAG+AGG | 0.485626 | 1_4:+15831559 | None:intergenic |
| TTTGGTGTATAGAGATAAGA+GGG | 0.489836 | 1_4:-15828459 | Msa0152850:three_prime_UTR |
| ATTCAAAGTCTATTTCATCA+TGG | 0.490439 | 1_4:+15830211 | None:intergenic |
| CCGTTACATTTGGTAATGGC+CGG | 0.501258 | 1_4:-15828696 | Msa0152850:CDS |
| TGATTATTAATTAATGCTGG+TGG | 0.502207 | 1_4:-15828406 | Msa0152850:three_prime_UTR |
| CGGCCATTACCAAATGTAAC+GGG | 0.507577 | 1_4:+15828697 | None:intergenic |
| AGAAGAAGAATATAACAAGA+GGG | 0.513988 | 1_4:+15831560 | None:intergenic |
| TGATTATACTGCTGGAGTTG+TGG | 0.518642 | 1_4:-15831019 | Msa0152850:CDS |
| TTTGGCGGTGTCTCTTTCCA+CGG | 0.520645 | 1_4:+15828668 | None:intergenic |
| AATGACTTTACATTTAGTAT+GGG | 0.520742 | 1_4:-15828250 | Msa0152850:three_prime_UTR |
| GTTCTCTTTACTTCTCTGAC+AGG | 0.527307 | 1_4:+15829093 | None:intergenic |
| GGAGAGTTGTTTCCCACCAT+GGG | 0.528532 | 1_4:-15828224 | Msa0152850:three_prime_UTR |
| ACTTTGAGCACTGTCACACT+TGG | 0.532982 | 1_4:+15828888 | None:intergenic |
| CTTTACATTTAGTATGGGAA+AGG | 0.533156 | 1_4:-15828245 | Msa0152850:three_prime_UTR |
| GATTATTAATTAATGCTGGT+GGG | 0.534378 | 1_4:-15828405 | Msa0152850:three_prime_UTR |
| AGAGAGTGACGAGTGAATGA+AGG | 0.549135 | 1_4:+15831588 | None:intergenic |
| GGAAATGGAAGTACAAACAT+TGG | 0.549278 | 1_4:-15830138 | Msa0152850:CDS |
| AAGCACTAAAATAGCCATGA+AGG | 0.555543 | 1_4:+15831058 | None:intergenic |
| GCATCTACTTGGGCTACCAA+TGG | 0.559060 | 1_4:-15829009 | Msa0152850:CDS |
| TCTCTATACACCAAAATGAA+AGG | 0.561408 | 1_4:+15828467 | None:intergenic |
| AGGAGAGTTGTTTCCCACCA+TGG | 0.561773 | 1_4:-15828225 | Msa0152850:three_prime_UTR |
| AAAATCAACTTTCCCATGGT+GGG | 0.562043 | 1_4:+15828212 | None:intergenic |
| ACATAAGAGGCAAAGATTGG+AGG | 0.566240 | 1_4:-15830179 | Msa0152850:CDS |
| TCGATTCGCGACAAGCTGAA+AGG | 0.568686 | 1_4:-15828735 | Msa0152850:CDS |
| CAAAATCAACTTTCCCATGG+TGG | 0.570470 | 1_4:+15828211 | None:intergenic |
| GAAGAAGAATATAACAAGAG+GGG | 0.575879 | 1_4:+15831561 | None:intergenic |
| TACTGATGAAATTCCTCAGA+AGG | 0.576854 | 1_4:+15830084 | None:intergenic |
| CCGGCCATTACCAAATGTAA+CGG | 0.580145 | 1_4:+15828696 | None:intergenic |
| CGATCACACACTCCGGTAGA+GGG | 0.581239 | 1_4:+15828755 | None:intergenic |
| TACCTAATAACCTAAAGAGA+TGG | 0.581873 | 1_4:+15828360 | None:intergenic |
| CAACAAAATCAAAATTATGG+TGG | 0.583041 | 1_4:-15828600 | Msa0152850:three_prime_UTR |
| CAGATACAAAGTCCCTCTAC+CGG | 0.595007 | 1_4:-15828767 | Msa0152850:CDS |
| CTTGGTGAAACAGAGTAACA+AGG | 0.597670 | 1_4:+15831315 | None:intergenic |
| TCAACTTGTGAAACATCAGA+AGG | 0.600465 | 1_4:+15828853 | None:intergenic |
| TCTACTTGGGCTACCAATGG+AGG | 0.600953 | 1_4:-15829006 | Msa0152850:CDS |
| TTTATGGTTTGATCCTTCTG+AGG | 0.601961 | 1_4:-15830097 | Msa0152850:CDS |
| CATATGGGATGCATCTACTT+GGG | 0.612597 | 1_4:-15829019 | Msa0152850:CDS |
| GATCAACTGCACAACCATGT+AGG | 0.614567 | 1_4:+15828926 | None:intergenic |
| AAGAGAACTGAGTCAATGAG+AGG | 0.626190 | 1_4:-15829078 | Msa0152850:CDS |
| ACTCCAGCAGTATAATCAGA+AGG | 0.629305 | 1_4:+15831024 | None:intergenic |
| AGTCAAAATCAACTTTCCCA+TGG | 0.630979 | 1_4:+15828208 | None:intergenic |
| ATAGCTTACATATGACACAA+AGG | 0.639475 | 1_4:+15828279 | None:intergenic |
| GGCGGTGTCTCTTTCCACGG+TGG | 0.643693 | 1_4:+15828671 | None:intergenic |
| AAGTTATGGTCTCCAAACAA+AGG | 0.651449 | 1_4:+15831255 | None:intergenic |
| CGCGAATCGATCACACACTC+CGG | 0.652371 | 1_4:+15828748 | None:intergenic |
| AGCTTACATATGACACAAAG+GGG | 0.667046 | 1_4:+15828281 | None:intergenic |
| TTGGTGTATAGAGATAAGAG+GGG | 0.681522 | 1_4:-15828458 | Msa0152850:three_prime_UTR |
| GGTAATGGCCGGCACCACCG+TGG | 0.687743 | 1_4:-15828685 | Msa0152850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATTAAATTATTAAAAA+TGG | + | chr1_4:15829150-15829169 | None:intergenic | 0.0% |
| !!! | TTGTTCAATTTTAAAAAAAA+AGG | - | chr1_4:15829436-15829455 | Msa0152850:intron | 10.0% |
| !! | TAATAATCATATAACTATTA+TGG | + | chr1_4:15831385-15831404 | None:intergenic | 10.0% |
| !!! | ATTTTTTTCTTCCATTTTTT+AGG | + | chr1_4:15829511-15829530 | None:intergenic | 15.0% |
| !! | AACTAAATATAGCATATTAA+GGG | + | chr1_4:15829795-15829814 | None:intergenic | 15.0% |
| !! | TAACTAAATATAGCATATTA+AGG | + | chr1_4:15829796-15829815 | None:intergenic | 15.0% |
| !! | TTATGTATATATATCCTTAA+AGG | - | chr1_4:15830075-15830094 | Msa0152850:CDS | 15.0% |
| !! | TATGTATATATATCCTTAAA+GGG | - | chr1_4:15830076-15830095 | Msa0152850:CDS | 15.0% |
| !! | TAAAATACAACTAAAAAACA+CGG | + | chr1_4:15830414-15830433 | None:intergenic | 15.0% |
| !! | TATCTCTCAAATTTATATAA+AGG | + | chr1_4:15830552-15830571 | None:intergenic | 15.0% |
| !! | TTTATATAAATTTGAGAGAT+AGG | - | chr1_4:15830551-15830570 | Msa0152850:intron | 15.0% |
| !! | ATATGATTATTAATTAATGC+TGG | - | chr1_4:15831393-15831412 | Msa0152850:five_prime_UTR | 15.0% |
| !! | AACGAAACAAAAAAAAAACA+TGG | - | chr1_4:15828414-15828433 | Msa0152850:three_prime_UTR | 20.0% |
| !! | ATAATCAGAAGGTAATTTAA+TGG | + | chr1_4:15828770-15828789 | None:intergenic | 20.0% |
| !! | TCTTGAGAAAATAATTTGAA+TGG | - | chr1_4:15829040-15829059 | Msa0152850:CDS | 20.0% |
| !! | CTTGAGAAAATAATTTGAAT+GGG | - | chr1_4:15829041-15829060 | Msa0152850:CDS | 20.0% |
| !!! | TTTAGTCTTTATGATGATAA+AGG | - | chr1_4:15829211-15829230 | Msa0152850:intron | 20.0% |
| !!! | CACTAATTTTACCTAAAAAA+TGG | - | chr1_4:15829497-15829516 | Msa0152850:intron | 20.0% |
| !!! | TGAAATAGACTTTGAATTTT+TGG | - | chr1_4:15829597-15829616 | Msa0152850:intron | 20.0% |
| !!! | GAAATAGACTTTGAATTTTT+GGG | - | chr1_4:15829598-15829617 | Msa0152850:intron | 20.0% |
| !! | AATGTTAATAATGAGGTTTA+GGG | - | chr1_4:15830302-15830321 | Msa0152850:intron | 20.0% |
| !!! | ATGTTAATGGTTAATTTGTT+AGG | + | chr1_4:15830334-15830353 | None:intergenic | 20.0% |
| !!! | GTGTTTTTCAATCATTAAAT+CGG | + | chr1_4:15830440-15830459 | None:intergenic | 20.0% |
| !! | GATTTAATGATTGAAAAACA+CGG | - | chr1_4:15830439-15830458 | Msa0152850:intron | 20.0% |
| !! | GTTCAACAAAATCAAAATTA+TGG | - | chr1_4:15831199-15831218 | Msa0152850:intron | 20.0% |
| !!! | GGTAATTTTATCATTTAATG+TGG | - | chr1_4:15831461-15831480 | Msa0152850:five_prime_UTR | 20.0% |
| !! | AATGACTTTACATTTAGTAT+GGG | - | chr1_4:15831552-15831571 | Msa0152850:five_prime_UTR | 20.0% |
| ! | AGAAGAAGAATATAACAAGA+GGG | + | chr1_4:15828245-15828264 | None:intergenic | 25.0% |
| !! | GTCACAGAAATTTTTCTTAA+GGG | + | chr1_4:15828348-15828367 | None:intergenic | 25.0% |
| !! | TGTCACAGAAATTTTTCTTA+AGG | + | chr1_4:15828349-15828368 | None:intergenic | 25.0% |
| ! | GGTATAATAGCAAAATTTCT+TGG | + | chr1_4:15828508-15828527 | None:intergenic | 25.0% |
| !! | CTATTATACCTTTTGATGAA+GGG | - | chr1_4:15828518-15828537 | Msa0152850:three_prime_UTR | 25.0% |
| ! | TAGATCATTAGTATATGATG+AGG | + | chr1_4:15828830-15828849 | None:intergenic | 25.0% |
| ! | TAGTCTATAAAACACTAACA+TGG | - | chr1_4:15828988-15829007 | Msa0152850:CDS | 25.0% |
| !! | CAAATTATTTTCTCAAGATG+TGG | + | chr1_4:15829038-15829057 | None:intergenic | 25.0% |
| !!! | TTTTGAAAGAAACTGTCATT+TGG | - | chr1_4:15829311-15829330 | Msa0152850:intron | 25.0% |
| ! | TTAGAAATTCAACGTAATCA+TGG | + | chr1_4:15829413-15829432 | None:intergenic | 25.0% |
| ! | ATTCAAAGTCTATTTCATCA+TGG | + | chr1_4:15829594-15829613 | None:intergenic | 25.0% |
| ! | AGGATTCAAACAAATGTTTA+TGG | - | chr1_4:15829643-15829662 | Msa0152850:intron | 25.0% |
| ! | CAAACAAATGTTTATGGAAA+TGG | - | chr1_4:15829649-15829668 | Msa0152850:intron | 25.0% |
| ! | TTCATCAGTATAGTATTCTT+TGG | - | chr1_4:15829731-15829750 | Msa0152850:intron | 25.0% |
| !! | ATGTACAATTTTTGCATTGA+TGG | - | chr1_4:15830001-15830020 | Msa0152850:intron | 25.0% |
| !! | TATAAAGTTCTGATGACATA+TGG | + | chr1_4:15830048-15830067 | None:intergenic | 25.0% |
| ! | TTATAAAGATTCCAATACCT+AGG | + | chr1_4:15830152-15830171 | None:intergenic | 25.0% |
| ! | GATTGCTAATTCATGAATTT+AGG | + | chr1_4:15830206-15830225 | None:intergenic | 25.0% |
| ! | ATGAACCAATGTTAATAATG+AGG | - | chr1_4:15830295-15830314 | Msa0152850:intron | 25.0% |
| ! | CTAAACCTCATTATTAACAT+TGG | + | chr1_4:15830303-15830322 | None:intergenic | 25.0% |
| ! | CAATGTTAATAATGAGGTTT+AGG | - | chr1_4:15830301-15830320 | Msa0152850:intron | 25.0% |
| ! | TTCTTATAGGCAAATGTTAA+TGG | + | chr1_4:15830347-15830366 | None:intergenic | 25.0% |
| !! | TTCGACTAATTTTCATCTAA+TGG | + | chr1_4:15830391-15830410 | None:intergenic | 25.0% |
| !! | ACAAGTTGAAAGAATCAAAA+TGG | - | chr1_4:15830963-15830982 | Msa0152850:intron | 25.0% |
| !!! | AAAACGAAGTAACTTTGTTT+TGG | + | chr1_4:15831155-15831174 | None:intergenic | 25.0% |
| ! | CAACAAAATCAAAATTATGG+TGG | - | chr1_4:15831202-15831221 | Msa0152850:CDS | 25.0% |
| ! | TGATTATTAATTAATGCTGG+TGG | - | chr1_4:15831396-15831415 | Msa0152850:five_prime_UTR | 25.0% |
| ! | GATTATTAATTAATGCTGGT+GGG | - | chr1_4:15831397-15831416 | Msa0152850:five_prime_UTR | 25.0% |
| ! | GAATGACTTTACATTTAGTA+TGG | - | chr1_4:15831551-15831570 | Msa0152850:five_prime_UTR | 25.0% |
| GAAGAAGAATATAACAAGAG+GGG | + | chr1_4:15828244-15828263 | None:intergenic | 30.0% | |
| GAGAAGAAGAATATAACAAG+AGG | + | chr1_4:15828246-15828265 | None:intergenic | 30.0% | |
| ! | GCTATTATACCTTTTGATGA+AGG | - | chr1_4:15828517-15828536 | Msa0152850:three_prime_UTR | 30.0% |
| CAGAATGAATGATCAAGTTA+TGG | + | chr1_4:15828564-15828583 | None:intergenic | 30.0% | |
| !! | TTGTGTTTTGTTCTGTTTTC+AGG | - | chr1_4:15828694-15828713 | Msa0152850:CDS | 30.0% |
| TGACAATTCACTGTAACATT+TGG | + | chr1_4:15828909-15828928 | None:intergenic | 30.0% | |
| ! | AATATCAAACAGACTTTTGC+TGG | + | chr1_4:15829292-15829311 | None:intergenic | 30.0% |
| GGTAAAATTAGTGCAATTGA+TGG | + | chr1_4:15829490-15829509 | None:intergenic | 30.0% | |
| TTTATTCTGCAGTTGTCAAA+TGG | - | chr1_4:15829550-15829569 | Msa0152850:intron | 30.0% | |
| !! | GAATTTTTGGGAAACATAAG+AGG | - | chr1_4:15829610-15829629 | Msa0152850:intron | 30.0% |
| ATTGGAAGAGAAGAAAGATA+TGG | - | chr1_4:15829682-15829701 | Msa0152850:intron | 30.0% | |
| GAGAAGAAAGATATGGTTTA+TGG | - | chr1_4:15829689-15829708 | Msa0152850:intron | 30.0% | |
| ! | TGAACAAAAAGTACAAGCAA+GGG | + | chr1_4:15829895-15829914 | None:intergenic | 30.0% |
| ! | TTGAACAAAAAGTACAAGCA+AGG | + | chr1_4:15829896-15829915 | None:intergenic | 30.0% |
| !!! | AACTGGTTTTTGCTTTTAGT+AGG | - | chr1_4:15829969-15829988 | Msa0152850:intron | 30.0% |
| GTATATATATCCTTAAAGGG+AGG | - | chr1_4:15830079-15830098 | Msa0152850:CDS | 30.0% | |
| AACCCACAAGATAAAAAAGT+TGG | - | chr1_4:15830102-15830121 | Msa0152850:CDS | 30.0% | |
| !!! | CACCAACTTTTTTATCTTGT+GGG | + | chr1_4:15830107-15830126 | None:intergenic | 30.0% |
| ATACCTAGGAATTTATCCAA+TGG | + | chr1_4:15830138-15830157 | None:intergenic | 30.0% | |
| TTGGATAAATTCCTAGGTAT+TGG | - | chr1_4:15830138-15830157 | Msa0152850:CDS | 30.0% | |
| ! | TTGTTACTTAGTTACCAAGT+AGG | - | chr1_4:15830231-15830250 | Msa0152850:CDS | 30.0% |
| TGCGGATACATATTTCTTAT+AGG | + | chr1_4:15830360-15830379 | None:intergenic | 30.0% | |
| !! | CTGTTGCAAATTTTAACCAT+TGG | + | chr1_4:15830481-15830500 | None:intergenic | 30.0% |
| TGACTTTGTATTCTACCATA+TGG | - | chr1_4:15830767-15830786 | Msa0152850:intron | 30.0% | |
| GACTTTGTATTCTACCATAT+GGG | - | chr1_4:15830768-15830787 | Msa0152850:intron | 30.0% | |
| ! | TACTTTGTATTTTCCTCCAT+TGG | + | chr1_4:15830812-15830831 | None:intergenic | 30.0% |
| TCAGAGAATTCAGCAATATA+GGG | + | chr1_4:15830850-15830869 | None:intergenic | 30.0% | |
| GAATCAAAATGGAGAACTTT+AGG | - | chr1_4:15830974-15830993 | Msa0152850:intron | 30.0% | |
| AAATTTGATCCCGTTACATT+TGG | - | chr1_4:15831096-15831115 | Msa0152850:intron | 30.0% | |
| !!! | TGTTTTAGTGCATGTTTGTT+TGG | + | chr1_4:15831256-15831275 | None:intergenic | 30.0% |
| ! | ATCTCTTTTGCCTTTCATTT+TGG | - | chr1_4:15831325-15831344 | Msa0152850:CDS | 30.0% |
| TCTCTATACACCAAAATGAA+AGG | + | chr1_4:15831338-15831357 | None:intergenic | 30.0% | |
| !! | TTTTGGTGTATAGAGATAAG+AGG | - | chr1_4:15831342-15831361 | Msa0152850:CDS | 30.0% |
| ! | TTTGGTGTATAGAGATAAGA+GGG | - | chr1_4:15831343-15831362 | Msa0152850:CDS | 30.0% |
| TACCTAATAACCTAAAGAGA+TGG | + | chr1_4:15831445-15831464 | None:intergenic | 30.0% | |
| TAGCTTACATATGACACAAA+GGG | + | chr1_4:15831525-15831544 | None:intergenic | 30.0% | |
| ATAGCTTACATATGACACAA+AGG | + | chr1_4:15831526-15831545 | None:intergenic | 30.0% | |
| CTTTACATTTAGTATGGGAA+AGG | - | chr1_4:15831557-15831576 | Msa0152850:five_prime_UTR | 30.0% | |
| GAGAGAAGAGAAAGAAAAGA+AGG | + | chr1_4:15828268-15828287 | None:intergenic | 35.0% | |
| AAGTTATGGTCTCCAAACAA+AGG | + | chr1_4:15828550-15828569 | None:intergenic | 35.0% | |
| AAGTAAGAGATGAACAGCTT+TGG | + | chr1_4:15828590-15828609 | None:intergenic | 35.0% | |
| TCTCATGATCTTTACCTTCA+TGG | - | chr1_4:15828730-15828749 | Msa0152850:CDS | 35.0% | |
| AAGCACTAAAATAGCCATGA+AGG | + | chr1_4:15828747-15828766 | None:intergenic | 35.0% | |
| TTACCTTCTGATTATACTGC+TGG | - | chr1_4:15828775-15828794 | Msa0152850:CDS | 35.0% | |
| TATGAAACACAGACACTTCT+CGG | - | chr1_4:15828855-15828874 | Msa0152850:CDS | 35.0% | |
| ! | CAGACTTTTGCTGGAAAAAA+GGG | + | chr1_4:15829283-15829302 | None:intergenic | 35.0% |
| ! | ACAGACTTTTGCTGGAAAAA+AGG | + | chr1_4:15829284-15829303 | None:intergenic | 35.0% |
| GAAACATAAGAGGCAAAGAT+TGG | - | chr1_4:15829620-15829639 | Msa0152850:intron | 35.0% | |
| ! | GGAAATGGAAGTACAAACAT+TGG | - | chr1_4:15829664-15829683 | Msa0152850:intron | 35.0% |
| TTTATGGTTTGATCCTTCTG+AGG | - | chr1_4:15829705-15829724 | Msa0152850:intron | 35.0% | |
| TACTGATGAAATTCCTCAGA+AGG | + | chr1_4:15829721-15829740 | None:intergenic | 35.0% | |
| ! | AAAAAGTACAAGCAAGGGAA+TGG | + | chr1_4:15829890-15829909 | None:intergenic | 35.0% |
| AAATCTGTGGATGTGGTAAA+TGG | + | chr1_4:15829944-15829963 | None:intergenic | 35.0% | |
| ! | TTTTCACAAATCTGTGGATG+TGG | + | chr1_4:15829951-15829970 | None:intergenic | 35.0% |
| ATCCACAGATTTGTGAAAAC+TGG | - | chr1_4:15829952-15829971 | Msa0152850:intron | 35.0% | |
| ! | AACCAGTTTTCACAAATCTG+TGG | + | chr1_4:15829957-15829976 | None:intergenic | 35.0% |
| !!! | CCACCAACTTTTTTATCTTG+TGG | + | chr1_4:15830108-15830127 | None:intergenic | 35.0% |
| CCACAAGATAAAAAAGTTGG+TGG | - | chr1_4:15830105-15830124 | Msa0152850:CDS | 35.0% | |
| TGACCATTGGATAAATTCCT+AGG | - | chr1_4:15830132-15830151 | Msa0152850:CDS | 35.0% | |
| CATCTAATGGTCTAGATTTG+CGG | + | chr1_4:15830378-15830397 | None:intergenic | 35.0% | |
| ACCATTGGATGAAGATAAGA+CGG | + | chr1_4:15830466-15830485 | None:intergenic | 35.0% | |
| TACAAAGTCATTGCCTTTGA+TGG | + | chr1_4:15830757-15830776 | None:intergenic | 35.0% | |
| GTCAGAGAATTCAGCAATAT+AGG | + | chr1_4:15830851-15830870 | None:intergenic | 35.0% | |
| TCAACTTGTGAAACATCAGA+AGG | + | chr1_4:15830952-15830971 | None:intergenic | 35.0% | |
| !!! | ACGAAGTAACTTTGTTTTGG+CGG | + | chr1_4:15831152-15831171 | None:intergenic | 35.0% |
| !! | ACTTCGTTTTAGTGCATGTT+TGG | - | chr1_4:15831165-15831184 | Msa0152850:intron | 35.0% |
| TTGGTGTATAGAGATAAGAG+GGG | - | chr1_4:15831344-15831363 | Msa0152850:CDS | 35.0% | |
| GTATAGTTCACCATCTCTTT+AGG | - | chr1_4:15831432-15831451 | Msa0152850:five_prime_UTR | 35.0% | |
| ! | CACCATCTCTTTAGGTTATT+AGG | - | chr1_4:15831440-15831459 | Msa0152850:five_prime_UTR | 35.0% |
| AGCTTACATATGACACAAAG+GGG | + | chr1_4:15831524-15831543 | None:intergenic | 35.0% | |
| AAAATCAACTTTCCCATGGT+GGG | + | chr1_4:15831593-15831612 | None:intergenic | 35.0% | |
| CTTGGTGAAACAGAGTAACA+AGG | + | chr1_4:15828490-15828509 | None:intergenic | 40.0% | |
| GGTGTATACCCTTCATCAAA+AGG | + | chr1_4:15828529-15828548 | None:intergenic | 40.0% | |
| ! | GAAGGGTATACACCTTTGTT+TGG | - | chr1_4:15828535-15828554 | Msa0152850:three_prime_UTR | 40.0% |
| CTCTTACTTGATGAGTCTTC+AGG | - | chr1_4:15828601-15828620 | Msa0152850:three_prime_UTR | 40.0% | |
| !! | TTTGTTCTGTTTTCAGGCTC+TGG | - | chr1_4:15828700-15828719 | Msa0152850:CDS | 40.0% |
| ACTCCAGCAGTATAATCAGA+AGG | + | chr1_4:15828781-15828800 | None:intergenic | 40.0% | |
| TGATTATACTGCTGGAGTTG+TGG | - | chr1_4:15828783-15828802 | Msa0152850:CDS | 40.0% | |
| CATCGACACCTTTGATCAAA+GGG | + | chr1_4:15829077-15829096 | None:intergenic | 40.0% | |
| ! | GTGTGATTTTGTCAAACTCG+CGG | + | chr1_4:15829385-15829404 | None:intergenic | 40.0% |
| AAAGGTTGACAAAATCGCGA+TGG | - | chr1_4:15829454-15829473 | Msa0152850:intron | 40.0% | |
| ! | TAGTGCAATTGATGGCACAT+TGG | + | chr1_4:15829482-15829501 | None:intergenic | 40.0% |
| ACATAAGAGGCAAAGATTGG+AGG | - | chr1_4:15829623-15829642 | Msa0152850:intron | 40.0% | |
| AGAGACGTATGAAACCTACT+TGG | + | chr1_4:15830248-15830267 | None:intergenic | 40.0% | |
| ACCGTCTTATCTTCATCCAA+TGG | - | chr1_4:15830462-15830481 | Msa0152850:intron | 40.0% | |
| GTTCTCTTTACTTCTCTGAC+AGG | + | chr1_4:15830712-15830731 | None:intergenic | 40.0% | |
| AAGAGAACTGAGTCAATGAG+AGG | - | chr1_4:15830724-15830743 | Msa0152850:intron | 40.0% | |
| ! | GAGAGGAGATTTTCCATCAA+AGG | - | chr1_4:15830741-15830760 | Msa0152850:intron | 40.0% |
| CATATGGGATGCATCTACTT+GGG | - | chr1_4:15830783-15830802 | Msa0152850:intron | 40.0% | |
| TTCTCTGACTTTGTCCTACA+TGG | - | chr1_4:15830862-15830881 | Msa0152850:intron | 40.0% | |
| GATCCCGTTACATTTGGTAA+TGG | - | chr1_4:15831102-15831121 | Msa0152850:intron | 40.0% | |
| CAAAATCAACTTTCCCATGG+TGG | + | chr1_4:15831594-15831613 | None:intergenic | 40.0% | |
| AGAGAGTGACGAGTGAATGA+AGG | + | chr1_4:15828217-15828236 | None:intergenic | 45.0% | |
| ACACAGACACTTCTCGGATT+AGG | - | chr1_4:15828861-15828880 | Msa0152850:CDS | 45.0% | |
| TAGACTATGAAGCAGAGCCA+TGG | + | chr1_4:15828975-15828994 | None:intergenic | 45.0% | |
| !!! | GGACTAGTCAGTGTCGTTTT+TGG | + | chr1_4:15829017-15829036 | None:intergenic | 45.0% |
| ! | GCATCGACACCTTTGATCAA+AGG | + | chr1_4:15829078-15829097 | None:intergenic | 45.0% |
| TCAACTCTTACGACAGGGTT+CGG | + | chr1_4:15830271-15830290 | None:intergenic | 45.0% | |
| TCGTCTCAACTCTTACGACA+GGG | + | chr1_4:15830276-15830295 | None:intergenic | 45.0% | |
| ATCGTCTCAACTCTTACGAC+AGG | + | chr1_4:15830277-15830296 | None:intergenic | 45.0% | |
| CCAAGTAGATGCATCCCATA+TGG | + | chr1_4:15830785-15830804 | None:intergenic | 45.0% | |
| CCATATGGGATGCATCTACT+TGG | - | chr1_4:15830782-15830801 | Msa0152850:intron | 45.0% | |
| GATCAACTGCACAACCATGT+AGG | + | chr1_4:15830879-15830898 | None:intergenic | 45.0% | |
| CACTTGGTCACATGCTCAAT+AGG | + | chr1_4:15830901-15830920 | None:intergenic | 45.0% | |
| ! | ACTTTGAGCACTGTCACACT+TGG | + | chr1_4:15830917-15830936 | None:intergenic | 45.0% |
| CAGATACAAAGTCCCTCTAC+CGG | - | chr1_4:15831035-15831054 | Msa0152850:CDS | 45.0% | |
| CGGCCATTACCAAATGTAAC+GGG | + | chr1_4:15831108-15831127 | None:intergenic | 45.0% | |
| CCGGCCATTACCAAATGTAA+CGG | + | chr1_4:15831109-15831128 | None:intergenic | 45.0% | |
| !! | CCGTTACATTTGGTAATGGC+CGG | - | chr1_4:15831106-15831125 | Msa0152850:intron | 45.0% |
| TCCAGCCACCCTTTGATCAA+AGG | - | chr1_4:15829066-15829085 | Msa0152850:CDS | 50.0% | |
| ACCTTTGATCAAAGGGTGGC+TGG | + | chr1_4:15829070-15829089 | None:intergenic | 50.0% | |
| CGACACCTTTGATCAAAGGG+TGG | + | chr1_4:15829074-15829093 | None:intergenic | 50.0% | |
| CTTGTGGGTTCCTCCCTTTA+AGG | + | chr1_4:15830092-15830111 | None:intergenic | 50.0% | |
| !! | AGTTGGTGGCATGTGACCAT+TGG | - | chr1_4:15830119-15830138 | Msa0152850:CDS | 50.0% |
| GCATCTACTTGGGCTACCAA+TGG | - | chr1_4:15830793-15830812 | Msa0152850:intron | 50.0% | |
| TCTACTTGGGCTACCAATGG+AGG | - | chr1_4:15830796-15830815 | Msa0152850:intron | 50.0% | |
| CGGTAGAGGGACTTTGTATC+TGG | + | chr1_4:15831037-15831056 | None:intergenic | 50.0% | |
| ! | TCGATTCGCGACAAGCTGAA+AGG | - | chr1_4:15831067-15831086 | Msa0152850:CDS | 50.0% |
| TTTGGCGGTGTCTCTTTCCA+CGG | + | chr1_4:15831137-15831156 | None:intergenic | 50.0% | |
| ! | AGGAGAGTTGTTTCCCACCA+TGG | - | chr1_4:15831577-15831596 | Msa0152850:five_prime_UTR | 50.0% |
| ! | GGAGAGTTGTTTCCCACCAT+GGG | - | chr1_4:15831578-15831597 | Msa0152850:five_prime_UTR | 50.0% |
| CGATCACACACTCCGGTAGA+GGG | + | chr1_4:15831050-15831069 | None:intergenic | 55.0% | |
| TCGATCACACACTCCGGTAG+AGG | + | chr1_4:15831051-15831070 | None:intergenic | 55.0% | |
| CGCGAATCGATCACACACTC+CGG | + | chr1_4:15831057-15831076 | None:intergenic | 55.0% | |
| CGTGTCGCGTCTAGTGTCCA+TGG | - | chr1_4:15828955-15828974 | Msa0152850:CDS | 60.0% | |
| GTCTCTTTCCACGGTGGTGC+CGG | + | chr1_4:15831128-15831147 | None:intergenic | 60.0% | |
| GGCGGTGTCTCTTTCCACGG+TGG | + | chr1_4:15831134-15831153 | None:intergenic | 65.0% | |
| ! | GGTAATGGCCGGCACCACCG+TGG | - | chr1_4:15831117-15831136 | Msa0152850:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 15828209 | 15831615 | 15828209 | ID=Msa0152850;Name=Msa0152850 |
| chr1_4 | mRNA | 15828209 | 15831615 | 15828209 | ID=Msa0152850-mRNA-1;Parent=Msa0152850;Name=Msa0152850-mRNA-1;_AED=0.02;_eAED=0.02;_QI=224|1|1|1|1|1|4|439|328 |
| chr1_4 | exon | 15828209 | 15829134 | 15828209 | ID=Msa0152850-mRNA-1:exon:6134;Parent=Msa0152850-mRNA-1 |
| chr1_4 | exon | 15830054 | 15830262 | 15830054 | ID=Msa0152850-mRNA-1:exon:6133;Parent=Msa0152850-mRNA-1 |
| chr1_4 | exon | 15831008 | 15831108 | 15831008 | ID=Msa0152850-mRNA-1:exon:6132;Parent=Msa0152850-mRNA-1 |
| chr1_4 | exon | 15831202 | 15831615 | 15831202 | ID=Msa0152850-mRNA-1:exon:6131;Parent=Msa0152850-mRNA-1 |
| chr1_4 | five_prime_UTR | 15831392 | 15831615 | 15831392 | ID=Msa0152850-mRNA-1:five_prime_utr;Parent=Msa0152850-mRNA-1 |
| chr1_4 | CDS | 15831202 | 15831391 | 15831202 | ID=Msa0152850-mRNA-1:cds;Parent=Msa0152850-mRNA-1 |
| chr1_4 | CDS | 15831008 | 15831108 | 15831008 | ID=Msa0152850-mRNA-1:cds;Parent=Msa0152850-mRNA-1 |
| chr1_4 | CDS | 15830054 | 15830262 | 15830054 | ID=Msa0152850-mRNA-1:cds;Parent=Msa0152850-mRNA-1 |
| chr1_4 | CDS | 15828648 | 15829134 | 15828648 | ID=Msa0152850-mRNA-1:cds;Parent=Msa0152850-mRNA-1 |
| chr1_4 | three_prime_UTR | 15828209 | 15828647 | 15828209 | ID=Msa0152850-mRNA-1:three_prime_utr;Parent=Msa0152850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
