Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1292840 | XP_013446150.2 | 96.205 | 448 | 17 | 0 | 1 | 448 | 1 | 448 | 0.0 | 914 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1292840 | A0A396GKI9 | 96.205 | 448 | 17 | 0 | 1 | 448 | 1 | 448 | 0.0 | 914 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034210 | Msa1292840 | 0.809720 | 1.645868e-50 | -8.615850e-47 |
| Msa0050660 | Msa1292840 | 0.812142 | 4.919321e-51 | -8.615850e-47 |
| Msa0050700 | Msa1292840 | 0.815302 | 9.911428e-52 | -8.615850e-47 |
| Msa0050790 | Msa1292840 | 0.824953 | 6.105053e-54 | -8.615850e-47 |
| Msa0128310 | Msa1292840 | 0.822748 | 2.006054e-53 | -8.615850e-47 |
| Msa0174440 | Msa1292840 | 0.809634 | 1.717320e-50 | -8.615850e-47 |
| Msa1292840 | Msa1393780 | 0.802571 | 5.266513e-49 | -8.615850e-47 |
| Msa1292840 | Msa1440630 | 0.822649 | 2.115770e-53 | -8.615850e-47 |
| Msa1292840 | Msa1452140 | 0.807108 | 5.936376e-50 | -8.615850e-47 |
| Msa0390970 | Msa1292840 | 0.801441 | 8.991505e-49 | -8.615850e-47 |
| Msa1042160 | Msa1292840 | 0.823604 | 1.266957e-53 | -8.615850e-47 |
| Msa1042190 | Msa1292840 | 0.820736 | 5.859362e-53 | -8.615850e-47 |
| Msa1123210 | Msa1292840 | 0.808498 | 3.007766e-50 | -8.615850e-47 |
| Msa1167470 | Msa1292840 | 0.809761 | 1.612677e-50 | -8.615850e-47 |
| Msa1198540 | Msa1292840 | 0.923710 | 1.853401e-89 | -8.615850e-47 |
| Msa0597270 | Msa1292840 | 0.808619 | 2.833739e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1292840 | MtrunA17_Chr8g0368161 | 96.205 | 448 | 17 | 0 | 1 | 448 | 1 | 448 | 0.0 | 914 |
| Msa1292840 | MtrunA17_Chr5g0413131 | 69.710 | 449 | 114 | 7 | 20 | 448 | 17 | 463 | 0.0 | 631 |
| Msa1292840 | MtrunA17_Chr4g0058771 | 61.311 | 473 | 149 | 8 | 8 | 448 | 11 | 481 | 0.0 | 592 |
| Msa1292840 | MtrunA17_Chr3g0117271 | 69.251 | 387 | 116 | 3 | 63 | 448 | 112 | 496 | 0.0 | 576 |
| Msa1292840 | MtrunA17_Chr8g0368241 | 64.251 | 414 | 145 | 1 | 38 | 448 | 1 | 414 | 0.0 | 559 |
| Msa1292840 | MtrunA17_Chr2g0314461 | 67.342 | 395 | 120 | 5 | 57 | 448 | 18 | 406 | 0.0 | 547 |
| Msa1292840 | MtrunA17_Chr2g0314451 | 64.706 | 408 | 131 | 6 | 48 | 448 | 4 | 405 | 0.0 | 533 |
| Msa1292840 | MtrunA17_Chr2g0314471 | 62.379 | 412 | 142 | 6 | 44 | 448 | 1 | 406 | 0.0 | 525 |
| Msa1292840 | MtrunA17_Chr7g0274951 | 54.118 | 425 | 169 | 6 | 49 | 447 | 15 | 439 | 9.68e-164 | 468 |
| Msa1292840 | MtrunA17_Chr1g0189961 | 51.972 | 431 | 173 | 6 | 51 | 448 | 22 | 451 | 5.71e-159 | 457 |
| Msa1292840 | MtrunA17_Chr8g0380511 | 53.302 | 424 | 162 | 6 | 45 | 447 | 7 | 415 | 6.79e-159 | 455 |
| Msa1292840 | MtrunA17_Chr8g0368291 | 54.524 | 420 | 167 | 7 | 38 | 448 | 1 | 405 | 7.17e-158 | 452 |
| Msa1292840 | MtrunA17_Chr2g0309251 | 53.627 | 386 | 158 | 3 | 83 | 448 | 42 | 426 | 2.11e-154 | 444 |
| Msa1292840 | MtrunA17_Chr8g0368201 | 60.248 | 322 | 110 | 4 | 143 | 448 | 1 | 320 | 4.83e-136 | 394 |
| Msa1292840 | MtrunA17_Chr8g0368341 | 55.620 | 347 | 138 | 5 | 103 | 448 | 4 | 335 | 2.39e-132 | 385 |
| Msa1292840 | MtrunA17_Chr8g0368221 | 59.790 | 286 | 87 | 3 | 38 | 323 | 1 | 258 | 5.58e-116 | 340 |
| Msa1292840 | MtrunA17_Chr2g0326371 | 57.632 | 321 | 120 | 8 | 132 | 448 | 52 | 360 | 9.18e-116 | 343 |
| Msa1292840 | MtrunA17_Chr8g0368351 | 58.621 | 261 | 89 | 5 | 1 | 257 | 3 | 248 | 4.16e-101 | 302 |
| Msa1292840 | MtrunA17_Chr8g0368181 | 70.466 | 193 | 56 | 1 | 256 | 448 | 2 | 193 | 6.98e-96 | 286 |
| Msa1292840 | MtrunA17_Chr6g0453411 | 40.741 | 378 | 183 | 10 | 102 | 448 | 8 | 375 | 2.25e-90 | 279 |
| Msa1292840 | MtrunA17_Chr3g0135371 | 37.413 | 433 | 231 | 11 | 40 | 448 | 19 | 435 | 9.26e-89 | 277 |
| Msa1292840 | MtrunA17_Chr3g0135381 | 38.718 | 390 | 212 | 6 | 79 | 443 | 45 | 432 | 1.01e-88 | 278 |
| Msa1292840 | MtrunA17_Chr3g0129891 | 57.205 | 229 | 87 | 4 | 224 | 447 | 157 | 379 | 6.87e-82 | 257 |
| Msa1292840 | MtrunA17_Chr3g0129891 | 59.474 | 190 | 69 | 2 | 15 | 201 | 8 | 192 | 2.40e-71 | 230 |
| Msa1292840 | MtrunA17_Chr8g0368331 | 44.043 | 277 | 123 | 4 | 201 | 448 | 13 | 286 | 1.47e-76 | 240 |
| Msa1292840 | MtrunA17_Chr8g0368281 | 57.513 | 193 | 81 | 1 | 256 | 447 | 2 | 194 | 4.87e-76 | 236 |
| Msa1292840 | MtrunA17_Chr8g0368361 | 55.897 | 195 | 83 | 2 | 256 | 448 | 2 | 195 | 7.02e-76 | 235 |
| Msa1292840 | MtrunA17_Chr3g0135401 | 39.564 | 321 | 161 | 7 | 150 | 444 | 33 | 346 | 1.27e-70 | 227 |
| Msa1292840 | MtrunA17_Chr1g0151871 | 39.130 | 299 | 170 | 5 | 151 | 448 | 40 | 327 | 7.50e-69 | 222 |
| Msa1292840 | MtrunA17_Chr8g0368171 | 50.000 | 228 | 82 | 7 | 38 | 257 | 1 | 204 | 1.06e-63 | 204 |
| Msa1292840 | MtrunA17_Chr8g0368231 | 72.000 | 125 | 35 | 0 | 324 | 448 | 8 | 132 | 6.04e-60 | 192 |
| Msa1292840 | MtrunA17_Chr8g0368271 | 58.824 | 153 | 60 | 1 | 38 | 187 | 1 | 153 | 2.21e-56 | 185 |
| Msa1292840 | MtrunA17_Chr8g0368261 | 63.846 | 130 | 45 | 2 | 320 | 448 | 1 | 129 | 4.31e-53 | 174 |
| Msa1292840 | MtrunA17_Chr8g0368321 | 58.940 | 151 | 52 | 3 | 38 | 187 | 1 | 142 | 1.29e-51 | 172 |
| Msa1292840 | MtrunA17_Chr8g0368381 | 61.607 | 112 | 43 | 0 | 256 | 367 | 2 | 113 | 2.58e-46 | 156 |
| Msa1292840 | MtrunA17_Chr3g0135431 | 39.823 | 226 | 101 | 6 | 82 | 278 | 41 | 260 | 2.24e-45 | 162 |
| Msa1292840 | MtrunA17_Chr3g0135441 | 35.433 | 254 | 137 | 6 | 198 | 448 | 3 | 232 | 3.15e-45 | 157 |
| Msa1292840 | MtrunA17_Chr3g0138811 | 29.661 | 354 | 221 | 13 | 99 | 444 | 53 | 386 | 1.12e-40 | 149 |
| Msa1292840 | MtrunA17_Chr8g0339871 | 37.083 | 240 | 135 | 9 | 213 | 442 | 4 | 237 | 3.55e-37 | 136 |
| Msa1292840 | MtrunA17_Chr2g0302691 | 30.056 | 356 | 212 | 11 | 100 | 442 | 37 | 368 | 6.10e-37 | 139 |
| Msa1292840 | MtrunA17_Chr8g0391201 | 34.711 | 242 | 138 | 9 | 212 | 442 | 3 | 235 | 8.13e-33 | 124 |
| Msa1292840 | MtrunA17_Chr5g0445181 | 29.825 | 342 | 173 | 13 | 46 | 383 | 19 | 297 | 4.33e-32 | 124 |
| Msa1292840 | MtrunA17_Chr2g0302651 | 33.028 | 218 | 115 | 8 | 234 | 442 | 1 | 196 | 2.27e-23 | 97.4 |
| Msa1292840 | MtrunA17_Chr3g0135451 | 42.063 | 126 | 52 | 4 | 82 | 187 | 35 | 159 | 1.89e-22 | 94.7 |
| Msa1292840 | MtrunA17_Chr8g0353941 | 35.106 | 188 | 112 | 6 | 261 | 444 | 1 | 182 | 8.52e-22 | 92.4 |
| Msa1292840 | MtrunA17_Chr8g0353971 | 35.673 | 171 | 102 | 5 | 276 | 442 | 4 | 170 | 1.07e-21 | 92.0 |
| Msa1292840 | MtrunA17_Chr5g0434771 | 38.272 | 162 | 92 | 6 | 266 | 425 | 9 | 164 | 2.61e-21 | 91.3 |
| Msa1292840 | MtrunA17_Chr8g0353931 | 29.493 | 217 | 127 | 7 | 51 | 257 | 3 | 203 | 8.21e-21 | 90.1 |
| Msa1292840 | MtrunA17_Chr5g0426971 | 27.027 | 259 | 162 | 6 | 186 | 442 | 23 | 256 | 3.09e-17 | 81.3 |
| Msa1292840 | MtrunA17_Chr8g0368191 | 55.714 | 70 | 27 | 2 | 51 | 117 | 9 | 77 | 5.18e-17 | 77.4 |
| Msa1292840 | MtrunA17_Chr8g0353961 | 34.951 | 103 | 64 | 2 | 86 | 185 | 33 | 135 | 1.37e-14 | 71.2 |
| Msa1292840 | MtrunA17_Chr5g0443801 | 35.135 | 111 | 70 | 2 | 211 | 321 | 21 | 129 | 2.56e-14 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1292840 | AT1G10750.1 | 73.560 | 382 | 100 | 1 | 67 | 448 | 87 | 467 | 0.0 | 613 |
| Msa1292840 | AT1G23340.2 | 68.238 | 403 | 126 | 2 | 47 | 448 | 8 | 409 | 0.0 | 588 |
| Msa1292840 | AT1G23340.1 | 68.238 | 403 | 126 | 2 | 47 | 448 | 8 | 409 | 0.0 | 588 |
| Msa1292840 | AT1G70550.1 | 70.712 | 379 | 110 | 1 | 70 | 448 | 88 | 465 | 0.0 | 582 |
| Msa1292840 | AT5G50150.1 | 69.634 | 382 | 113 | 3 | 69 | 448 | 40 | 420 | 0.0 | 569 |
| Msa1292840 | AT1G55360.1 | 55.959 | 386 | 151 | 5 | 81 | 448 | 38 | 422 | 1.39e-158 | 455 |
| Msa1292840 | AT3G13510.1 | 53.511 | 413 | 161 | 7 | 53 | 448 | 21 | 419 | 3.03e-158 | 454 |
| Msa1292840 | AT5G18460.1 | 56.250 | 384 | 142 | 5 | 86 | 447 | 50 | 429 | 3.70e-157 | 452 |
| Msa1292840 | AT5G56530.2 | 53.222 | 419 | 154 | 7 | 51 | 447 | 21 | 419 | 2.05e-153 | 442 |
| Msa1292840 | AT5G56530.1 | 53.222 | 419 | 154 | 7 | 51 | 447 | 21 | 419 | 2.05e-153 | 442 |
| Msa1292840 | AT2G44210.1 | 51.196 | 418 | 174 | 7 | 51 | 448 | 8 | 415 | 3.98e-148 | 428 |
| Msa1292840 | AT2G44210.2 | 47.991 | 448 | 173 | 8 | 51 | 448 | 8 | 445 | 2.19e-142 | 415 |
| Msa1292840 | AT1G23340.3 | 66.906 | 278 | 90 | 2 | 47 | 323 | 8 | 284 | 5.50e-136 | 393 |
| Msa1292840 | AT2G44220.1 | 47.816 | 412 | 186 | 9 | 51 | 448 | 7 | 403 | 9.34e-133 | 389 |
| Msa1292840 | AT2G44240.1 | 49.474 | 380 | 181 | 7 | 77 | 448 | 26 | 402 | 3.82e-124 | 367 |
| Msa1292840 | AT2G17750.1 | 41.849 | 411 | 212 | 10 | 47 | 447 | 2 | 395 | 5.73e-113 | 338 |
| Msa1292840 | AT3G48230.1 | 47.733 | 375 | 184 | 8 | 82 | 448 | 3 | 373 | 3.35e-111 | 332 |
| Msa1292840 | AT2G44250.1 | 45.477 | 409 | 202 | 10 | 51 | 447 | 9 | 408 | 3.65e-109 | 328 |
| Msa1292840 | AT2G19360.1 | 41.898 | 432 | 204 | 10 | 47 | 447 | 10 | 425 | 5.73e-108 | 326 |
| Msa1292840 | AT5G19170.1 | 46.067 | 356 | 168 | 7 | 98 | 442 | 23 | 365 | 5.21e-104 | 315 |
| Msa1292840 | AT1G70550.2 | 69.268 | 205 | 62 | 1 | 70 | 274 | 88 | 291 | 5.59e-102 | 306 |
| Msa1292840 | AT1G10750.2 | 61.404 | 228 | 86 | 2 | 67 | 293 | 87 | 313 | 4.62e-95 | 290 |
| Msa1292840 | AT2G44250.2 | 49.186 | 307 | 143 | 7 | 151 | 447 | 22 | 325 | 1.94e-88 | 273 |
| Msa1292840 | AT5G25950.1 | 36.927 | 436 | 228 | 9 | 43 | 448 | 14 | 432 | 1.15e-81 | 259 |
| Msa1292840 | AT5G25960.1 | 37.500 | 408 | 196 | 8 | 49 | 448 | 1 | 357 | 2.38e-73 | 235 |
| Msa1292840 | AT2G20170.1 | 36.496 | 411 | 224 | 15 | 47 | 442 | 8 | 396 | 4.92e-73 | 235 |
| Msa1292840 | AT2G20170.2 | 36.496 | 411 | 224 | 15 | 47 | 442 | 8 | 396 | 4.92e-73 | 235 |
| Msa1292840 | AT4G23390.1 | 37.228 | 368 | 205 | 13 | 90 | 442 | 41 | 397 | 5.64e-66 | 217 |
| Msa1292840 | AT4G23370.1 | 35.013 | 377 | 220 | 12 | 83 | 442 | 33 | 401 | 6.90e-66 | 217 |
| Msa1292840 | AT2G20170.3 | 34.307 | 411 | 216 | 15 | 47 | 442 | 8 | 379 | 4.05e-64 | 211 |
| Msa1292840 | AT4G23380.1 | 33.090 | 411 | 242 | 13 | 46 | 442 | 7 | 398 | 3.22e-62 | 207 |
| Msa1292840 | AT4G23350.1 | 31.452 | 372 | 236 | 9 | 83 | 442 | 36 | 400 | 1.90e-58 | 197 |
| Msa1292840 | AT4G23365.1 | 31.989 | 372 | 232 | 11 | 83 | 442 | 36 | 398 | 2.67e-58 | 197 |
| Msa1292840 | AT4G23355.1 | 32.000 | 375 | 228 | 11 | 83 | 442 | 36 | 398 | 1.88e-56 | 192 |
| Msa1292840 | AT4G23360.1 | 32.361 | 377 | 225 | 12 | 83 | 442 | 36 | 399 | 1.43e-55 | 190 |
| Msa1292840 | AT2G35250.1 | 34.018 | 341 | 197 | 10 | 107 | 444 | 24 | 339 | 3.40e-51 | 176 |
| Msa1292840 | AT1G10190.1 | 30.751 | 413 | 243 | 18 | 52 | 442 | 3 | 394 | 9.79e-45 | 160 |
| Msa1292840 | AT4G17505.1 | 30.141 | 355 | 193 | 13 | 98 | 448 | 18 | 321 | 3.07e-44 | 157 |
| Msa1292840 | AT4G15050.1 | 30.504 | 377 | 222 | 17 | 86 | 442 | 38 | 394 | 6.34e-41 | 150 |
| Msa1292840 | AT2G24950.1 | 29.238 | 407 | 247 | 17 | 51 | 442 | 29 | 409 | 5.55e-39 | 145 |
| Msa1292840 | AT2G27320.1 | 33.333 | 303 | 171 | 9 | 109 | 407 | 30 | 305 | 4.27e-38 | 141 |
| Msa1292840 | AT4G10220.1 | 27.553 | 421 | 256 | 15 | 41 | 442 | 8 | 398 | 3.71e-37 | 140 |
| Msa1292840 | AT4G15053.1 | 29.767 | 430 | 248 | 20 | 38 | 442 | 1 | 401 | 8.29e-37 | 139 |
| Msa1292840 | AT4G23373.1 | 34.400 | 250 | 132 | 9 | 47 | 295 | 7 | 225 | 1.50e-33 | 128 |
| Msa1292840 | AT5G05030.1 | 29.167 | 360 | 224 | 12 | 94 | 444 | 22 | 359 | 7.32e-33 | 128 |
| Msa1292840 | AT5G46810.1 | 27.714 | 350 | 225 | 11 | 110 | 442 | 11 | 349 | 2.36e-32 | 126 |
| Msa1292840 | AT5G46820.1 | 28.451 | 355 | 226 | 12 | 101 | 442 | 8 | 347 | 5.08e-32 | 125 |
| Msa1292840 | AT5G25410.1 | 27.500 | 360 | 226 | 13 | 94 | 442 | 28 | 363 | 1.58e-31 | 124 |
| Msa1292840 | AT5G60380.1 | 28.571 | 343 | 216 | 13 | 110 | 442 | 44 | 367 | 8.02e-30 | 119 |
| Msa1292840 | AT4G10210.1 | 26.634 | 413 | 249 | 16 | 38 | 427 | 5 | 386 | 3.20e-29 | 118 |
| Msa1292840 | AT5G46200.1 | 27.013 | 385 | 219 | 15 | 110 | 442 | 31 | 405 | 1.08e-28 | 117 |
| Msa1292840 | AT2G38255.1 | 33.810 | 210 | 105 | 6 | 110 | 312 | 14 | 196 | 1.64e-27 | 109 |
| Msa1292840 | AT5G11660.1 | 31.058 | 293 | 180 | 11 | 160 | 444 | 26 | 304 | 1.46e-26 | 109 |
| Msa1292840 | AT4G23080.1 | 27.336 | 428 | 256 | 20 | 42 | 444 | 9 | 406 | 1.80e-26 | 110 |
| Msa1292840 | AT4G17860.1 | 28.977 | 352 | 202 | 17 | 110 | 442 | 29 | 351 | 3.72e-25 | 106 |
| Msa1292840 | AT5G25415.1 | 32.787 | 244 | 143 | 8 | 212 | 444 | 99 | 332 | 2.11e-24 | 103 |
| Msa1292840 | AT5G36680.1 | 28.383 | 303 | 181 | 12 | 159 | 447 | 51 | 331 | 3.29e-23 | 100 |
| Msa1292840 | AT5G36770.1 | 28.383 | 303 | 181 | 12 | 159 | 447 | 51 | 331 | 3.29e-23 | 100 |
| Msa1292840 | AT2G03930.2 | 53.125 | 96 | 42 | 3 | 197 | 289 | 38 | 133 | 4.91e-23 | 95.9 |
| Msa1292840 | AT5G04937.1 | 29.442 | 197 | 112 | 8 | 253 | 442 | 22 | 198 | 6.04e-17 | 79.7 |
| Msa1292840 | AT5G37520.1 | 28.879 | 232 | 124 | 12 | 218 | 443 | 2 | 198 | 6.99e-15 | 73.6 |
Find 124 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATATTCTTCTTTCATTTCT+TGG | 0.122119 | 8_3:-49439719 | Msa1292840:three_prime_UTR |
| ATTTGAGTGTTCTTATATTT+TGG | 0.152354 | 8_3:+49444884 | None:intergenic |
| ACCCTAGATTCTTCACTTAT+TGG | 0.171239 | 8_3:-49441909 | Msa1292840:CDS |
| TCTCTCTCTGAACATATTTC+AGG | 0.180748 | 8_3:+49445041 | None:intergenic |
| ATCCCTATTCACACACTTAA+AGG | 0.191236 | 8_3:-49440084 | Msa1292840:CDS |
| TCTTGTATATTATAACAATT+TGG | 0.235227 | 8_3:+49439864 | None:intergenic |
| GGCTTCAAAGGCTTTGAAAA+TGG | 0.257111 | 8_3:-49445000 | Msa1292840:five_prime_UTR |
| TCTTCTTTCATTTCTTGGTT+GGG | 0.261381 | 8_3:-49439714 | Msa1292840:three_prime_UTR |
| ATGAAGAGTTTCACAAGTTT+AGG | 0.287405 | 8_3:-49444688 | Msa1292840:CDS |
| TCTCCAACTTCTACATATAA+TGG | 0.288121 | 8_3:-49441657 | Msa1292840:CDS |
| AATTCAGCTTGTCTCAAATA+TGG | 0.288451 | 8_3:-49443000 | Msa1292840:CDS |
| CCCATTTGCTTATGCTCTCT+TGG | 0.302334 | 8_3:+49444308 | None:intergenic |
| ATACAAGAAGGAACTAATAA+TGG | 0.313088 | 8_3:-49439849 | Msa1292840:CDS |
| TTGGTAGAAAAGTTTGATTT+TGG | 0.315468 | 8_3:+49444711 | None:intergenic |
| TCATTAAGCTTATATCAAAT+TGG | 0.327615 | 8_3:+49441631 | None:intergenic |
| CAAAATGTCCACTACCCATT+TGG | 0.328159 | 8_3:+49439991 | None:intergenic |
| TTCTTCTTTCATTTCTTGGT+TGG | 0.328319 | 8_3:-49439715 | Msa1292840:three_prime_UTR |
| AGCCACCAATTCCCATGCTT+TGG | 0.330284 | 8_3:+49440146 | None:intergenic |
| GGGAATTGGTGGCTTGAATA+TGG | 0.338331 | 8_3:-49440137 | Msa1292840:CDS |
| TGGATCATCTCTGGTTCATT+TGG | 0.338622 | 8_3:-49442980 | Msa1292840:CDS |
| GCTTGCTCTATTAACACATT+TGG | 0.344553 | 8_3:-49444185 | Msa1292840:CDS |
| AGTGCAACAATGGTTCAATT+TGG | 0.351443 | 8_3:-49440059 | Msa1292840:CDS |
| ACTAGCAGTAATATTGCTAT+TGG | 0.358734 | 8_3:-49441690 | Msa1292840:CDS |
| TATCCTTTAAGTGTGTGAAT+AGG | 0.369475 | 8_3:+49440081 | None:intergenic |
| TTAGCTACAACATTGAGATT+TGG | 0.370876 | 8_3:+49439891 | None:intergenic |
| TGCTACAATTTACTTTGCTC+TGG | 0.378764 | 8_3:-49441723 | Msa1292840:CDS |
| TTGATATAAGCTTAATGATC+TGG | 0.379405 | 8_3:-49441626 | Msa1292840:CDS |
| GTCCAATAAGTGAAGAATCT+AGG | 0.380593 | 8_3:+49441907 | None:intergenic |
| ATCCTTTAAGTGTGTGAATA+GGG | 0.384997 | 8_3:+49440082 | None:intergenic |
| GTCTCACACTTCTACCCAAA+TGG | 0.386568 | 8_3:-49440006 | Msa1292840:CDS |
| CTTCTTTCATTTCTTGGTTG+GGG | 0.396638 | 8_3:-49439713 | Msa1292840:three_prime_UTR |
| TTAGATTGTCTTACAAATAC+TGG | 0.397633 | 8_3:-49444966 | Msa1292840:five_prime_UTR |
| ATACATAATTACAATTATAT+AGG | 0.399802 | 8_3:-49439760 | Msa1292840:three_prime_UTR |
| ACTGATGCATATCAAGGAAC+TGG | 0.402596 | 8_3:-49441747 | Msa1292840:CDS |
| AACTTGTGAAACTCTTCATT+TGG | 0.403131 | 8_3:+49444692 | None:intergenic |
| ATAGTGAATACAATGTCAAC+AGG | 0.406411 | 8_3:-49440029 | Msa1292840:CDS |
| CAGGTCAGCCCAGAGCTCTA+TGG | 0.408690 | 8_3:-49441940 | Msa1292840:CDS |
| TATGGATCTGGAAACTTGAT+TGG | 0.410366 | 8_3:-49440119 | Msa1292840:CDS |
| CTGGAAACTTGATTGGGTAT+TGG | 0.411401 | 8_3:-49440112 | Msa1292840:CDS |
| TTTCAATTGTGGAGTTTCTC+AGG | 0.412909 | 8_3:-49444269 | Msa1292840:CDS |
| AAAATGTCCACTACCCATTT+GGG | 0.415939 | 8_3:+49439992 | None:intergenic |
| CTAATCGGAATCGTTCCTTC+TGG | 0.418990 | 8_3:+49444236 | None:intergenic |
| TGAGACAAGCTGAATTCATA+TGG | 0.421304 | 8_3:+49443007 | None:intergenic |
| AAATATGTTCAGAGAGAGAA+AGG | 0.428067 | 8_3:-49445037 | Msa1292840:five_prime_UTR |
| ACCAAGAGAGCATAAGCAAA+TGG | 0.428963 | 8_3:-49444309 | Msa1292840:CDS |
| CATATGGACTTTCCACTTGT+GGG | 0.431251 | 8_3:+49443023 | None:intergenic |
| GCCTGCTGTTAAGACAATTC+AGG | 0.432132 | 8_3:-49444630 | Msa1292840:intron |
| CTCTCTCTGAACATATTTCA+GGG | 0.432830 | 8_3:+49445042 | None:intergenic |
| GGAGAAGAAAATGAAGGAGG+AGG | 0.445382 | 8_3:+49444777 | None:intergenic |
| TACAAGAAGGAACTAATAAT+GGG | 0.448624 | 8_3:-49439848 | Msa1292840:CDS |
| TAGCTATCCCCATAGAGCTC+TGG | 0.454983 | 8_3:+49441931 | None:intergenic |
| AAAATTGAAACGTGTTAGAA+TGG | 0.456346 | 8_3:-49444159 | Msa1292840:CDS |
| TACCATTGAAGCTGGTTGGC+AGG | 0.466050 | 8_3:-49442945 | Msa1292840:intron |
| CCTCCATTATATGTAGAAGT+TGG | 0.467832 | 8_3:+49441654 | None:intergenic |
| TGAAGGAGGAGGGAGATGAC+TGG | 0.470901 | 8_3:+49444788 | None:intergenic |
| AAACAAGGAGAAGAAAATGA+AGG | 0.472952 | 8_3:+49444771 | None:intergenic |
| AGCTATCCCCATAGAGCTCT+GGG | 0.473291 | 8_3:+49441932 | None:intergenic |
| TGGTGGCTTGAATATGGATC+TGG | 0.475485 | 8_3:-49440131 | Msa1292840:CDS |
| AGGATCCAAAGCATGGGAAT+TGG | 0.479599 | 8_3:-49440151 | Msa1292840:CDS |
| TGCCTGCCAACCAGCTTCAA+TGG | 0.481927 | 8_3:+49442943 | None:intergenic |
| AGGTCAGCCCAGAGCTCTAT+GGG | 0.482474 | 8_3:-49441939 | Msa1292840:CDS |
| ACCTGAATTGTCTTAACAGC+AGG | 0.484466 | 8_3:+49444629 | None:intergenic |
| GCAACAATGGTTCAATTTGG+TGG | 0.484648 | 8_3:-49440056 | Msa1292840:CDS |
| GTGAGTGGGAATGAGTACTA+TGG | 0.487457 | 8_3:-49443073 | Msa1292840:CDS |
| AAAATTATAACTTTCAATTG+TGG | 0.487536 | 8_3:-49444280 | Msa1292840:CDS |
| TCTCAAATATGGATCATCTC+TGG | 0.501761 | 8_3:-49442989 | Msa1292840:CDS |
| CTTTAGAAATATGCAAGTTG+TGG | 0.502120 | 8_3:-49439940 | Msa1292840:CDS |
| TCCAATAAGTGAAGAATCTA+GGG | 0.502742 | 8_3:+49441908 | None:intergenic |
| GAAGGAGGAGGGAGATGACT+GGG | 0.504763 | 8_3:+49444789 | None:intergenic |
| CCAAGAGAGCATAAGCAAAT+GGG | 0.509356 | 8_3:-49444308 | Msa1292840:CDS |
| TTATGCTCTCTTGGTCTCTC+CGG | 0.511099 | 8_3:+49444317 | None:intergenic |
| TCATATGGACTTTCCACTTG+TGG | 0.512196 | 8_3:+49443022 | None:intergenic |
| TGGGGTTAGATTTGTTCCAA+TGG | 0.524090 | 8_3:-49444913 | Msa1292840:CDS |
| GAGAAGAAAATGAAGGAGGA+GGG | 0.526751 | 8_3:+49444778 | None:intergenic |
| TCTCACACTTCTACCCAAAT+GGG | 0.527784 | 8_3:-49440005 | Msa1292840:CDS |
| ATCCAAAGCATGGGAATTGG+TGG | 0.528426 | 8_3:-49440148 | Msa1292840:CDS |
| ATGGATCTGGAAACTTGATT+GGG | 0.531742 | 8_3:-49440118 | Msa1292840:CDS |
| AACATAGGATGGTCAAAAGC+TGG | 0.536748 | 8_3:+49444469 | None:intergenic |
| TTGCAGACTGATGCATATCA+AGG | 0.537288 | 8_3:-49441753 | Msa1292840:intron |
| TTTATGTGTATAGGATCCTC+CGG | 0.539657 | 8_3:-49444336 | Msa1292840:intron |
| CAATCTATGATATCACCATC+AGG | 0.544949 | 8_3:+49444511 | None:intergenic |
| AAGAGTTTCACAAGTTTAGG+AGG | 0.546074 | 8_3:-49444685 | Msa1292840:CDS |
| GAAGGAACTAATAATGGGTG+GGG | 0.546366 | 8_3:-49439843 | Msa1292840:CDS |
| CAAGGAGAAGAAAATGAAGG+AGG | 0.547694 | 8_3:+49444774 | None:intergenic |
| TTGTACCTCATGTCCATCGC+CGG | 0.547979 | 8_3:+49444130 | None:intergenic |
| GATCTCAATACCATTGAAGC+TGG | 0.548557 | 8_3:-49442953 | Msa1292840:CDS |
| TCAATACCATTGAAGCTGGT+TGG | 0.549014 | 8_3:-49442949 | Msa1292840:CDS |
| TTTGTCCTCTCAACATAGGA+TGG | 0.550432 | 8_3:+49444458 | None:intergenic |
| AGAAGGAACTAATAATGGGT+GGG | 0.554565 | 8_3:-49439844 | Msa1292840:CDS |
| TACAACATTGAGATTTGGCA+AGG | 0.560466 | 8_3:+49439896 | None:intergenic |
| TGCGTGTAGGATCCAAAGCA+TGG | 0.565093 | 8_3:-49440158 | Msa1292840:intron |
| AAATGTGTGGGTCCCACAAG+TGG | 0.566747 | 8_3:-49443035 | Msa1292840:CDS |
| GTATATTATAACAATTTGGA+CGG | 0.567975 | 8_3:+49439868 | None:intergenic |
| TAGATTCTTCACTTATTGGA+CGG | 0.568545 | 8_3:-49441905 | Msa1292840:intron |
| TTTACTATGGTGGTCCTGGA+AGG | 0.570062 | 8_3:-49439812 | Msa1292840:CDS |
| ACTTCTACCCAAATGGGTAG+TGG | 0.571003 | 8_3:-49439999 | Msa1292840:CDS |
| AATGATGCACAGCATGCAGT+TGG | 0.572287 | 8_3:-49443100 | Msa1292840:intron |
| CTTAAAGGATAGTGCAACAA+TGG | 0.576183 | 8_3:-49440069 | Msa1292840:CDS |
| TGCTCTCTTGGTCTCTCCGG+AGG | 0.583271 | 8_3:+49444320 | None:intergenic |
| CAAAAGCTAGCATAAATGTG+TGG | 0.585357 | 8_3:-49443048 | Msa1292840:CDS |
| AGAATGGACACCACCGGCGA+TGG | 0.585596 | 8_3:-49444143 | Msa1292840:CDS |
| AATTGTTATAATATACAAGA+AGG | 0.590507 | 8_3:-49439861 | Msa1292840:CDS |
| TTTGACCATCCTATGTTGAG+AGG | 0.592755 | 8_3:-49444463 | Msa1292840:CDS |
| GTTTATTCTTCAGAAACAAG+TGG | 0.596638 | 8_3:-49444734 | Msa1292840:CDS |
| CACCACCGGCGATGGACATG+AGG | 0.599402 | 8_3:-49444135 | Msa1292840:intron |
| GCAAGAAAACAACACAAATG+TGG | 0.599836 | 8_3:-49444848 | Msa1292840:CDS |
| CTGATGCATATCAAGGAACT+GGG | 0.602205 | 8_3:-49441746 | Msa1292840:CDS |
| AAGAAGGAACTAATAATGGG+TGG | 0.603081 | 8_3:-49439845 | Msa1292840:CDS |
| AATATGTTCAGAGAGAGAAA+GGG | 0.604579 | 8_3:-49445036 | Msa1292840:five_prime_UTR |
| AAGTGTGTGAATAGGGATGA+TGG | 0.604788 | 8_3:+49440089 | None:intergenic |
| TACCTCATGTCCATCGCCGG+TGG | 0.612456 | 8_3:+49444133 | None:intergenic |
| TATAAGCTTAATGATCTGGA+AGG | 0.613625 | 8_3:-49441622 | Msa1292840:intron |
| AAAAGCTAGCATAAATGTGT+GGG | 0.619969 | 8_3:-49443047 | Msa1292840:CDS |
| CATGACAAACCAAAGAAACA+AGG | 0.620517 | 8_3:+49444756 | None:intergenic |
| TCAGGTGAATCATGTCCAGA+AGG | 0.626410 | 8_3:-49444251 | Msa1292840:CDS |
| AATACACACAAACACAAACA+TGG | 0.626698 | 8_3:-49444822 | Msa1292840:CDS |
| GCGTGTAGGATCCAAAGCAT+GGG | 0.628244 | 8_3:-49440157 | Msa1292840:intron |
| ACAACATTGAGATTTGGCAA+GGG | 0.654257 | 8_3:+49439897 | None:intergenic |
| CGTGTTAGAATGGACACCAC+CGG | 0.654611 | 8_3:-49444149 | Msa1292840:CDS |
| CCAACTTCTACATATAATGG+AGG | 0.662547 | 8_3:-49441654 | Msa1292840:CDS |
| ATGCAGTTGGATATGTGAGT+GGG | 0.674700 | 8_3:-49443087 | Msa1292840:CDS |
| CATGCAGTTGGATATGTGAG+TGG | 0.677188 | 8_3:-49443088 | Msa1292840:CDS |
| TAGTGAATACAATGTCAACA+GGG | 0.716345 | 8_3:-49440028 | Msa1292840:CDS |
| GGTCAGCCCAGAGCTCTATG+GGG | 0.745363 | 8_3:-49441938 | Msa1292840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTTTGAAATAATTAATAT+CGG | - | chr8_3:49441191-49441210 | Msa1292840:intron | 10.0% |
| !!! | TTTTATCAGAATATTATTTT+TGG | + | chr8_3:49441401-49441420 | None:intergenic | 10.0% |
| !!! | GTAAAATTAGTTTAAAAAAA+GGG | + | chr8_3:49442677-49442696 | None:intergenic | 10.0% |
| !!! | TGTAAAATTAGTTTAAAAAA+AGG | + | chr8_3:49442678-49442697 | None:intergenic | 10.0% |
| !! | AAAAAATATGATAAATTATG+TGG | + | chr8_3:49444081-49444100 | None:intergenic | 10.0% |
| !!! | TCTTTTTTAAACTATTAAAA+AGG | - | chr8_3:49444490-49444509 | Msa1292840:CDS | 10.0% |
| !! | ATACATAATTACAATTATAT+AGG | - | chr8_3:49445012-49445031 | Msa1292840:five_prime_UTR | 10.0% |
| !!! | GTCATATATTATATTTTTGT+TGG | - | chr8_3:49439828-49439847 | Msa1292840:CDS | 15.0% |
| !!! | ATATTATATTTTTGTTGGAT+TGG | - | chr8_3:49439833-49439852 | Msa1292840:CDS | 15.0% |
| !!! | CATCTATTTTTTCTTAAAAA+AGG | + | chr8_3:49440200-49440219 | None:intergenic | 15.0% |
| !!! | CTTTTTTAAGAAAAAATAGA+TGG | - | chr8_3:49440198-49440217 | Msa1292840:intron | 15.0% |
| !! | TATTTCAACTTATAATTGTT+CGG | - | chr8_3:49440412-49440431 | Msa1292840:intron | 15.0% |
| !! | AAAATTATAACTTTCAATTG+TGG | - | chr8_3:49440492-49440511 | Msa1292840:intron | 15.0% |
| !!! | TTTTATGTTTCTTTTCATTA+TGG | - | chr8_3:49440730-49440749 | Msa1292840:intron | 15.0% |
| !!! | TTTTGGCTTATATAAAATTA+CGG | - | chr8_3:49440899-49440918 | Msa1292840:intron | 15.0% |
| !! | AAAGAAAATATAGACAAAAA+TGG | + | chr8_3:49440986-49441005 | None:intergenic | 15.0% |
| !! | ATTATTTCAAAAGAAATGAA+TGG | + | chr8_3:49441185-49441204 | None:intergenic | 15.0% |
| !! | CTATTGAAGATAAAAATAAT+TGG | + | chr8_3:49441556-49441575 | None:intergenic | 15.0% |
| !! | ATTTATATTAGATTCAATGT+TGG | + | chr8_3:49441603-49441622 | None:intergenic | 15.0% |
| !!! | ATTTTTTACTTGTCATTTTA+AGG | - | chr8_3:49441944-49441963 | Msa1292840:intron | 15.0% |
| !!! | AAAGTATCATTATTAAGTAT+TGG | + | chr8_3:49442082-49442101 | None:intergenic | 15.0% |
| !! | TATATACATATCAAGAAAAA+TGG | + | chr8_3:49442137-49442156 | None:intergenic | 15.0% |
| !! | AACAAATAGAACAATTAATT+TGG | - | chr8_3:49442195-49442214 | Msa1292840:intron | 15.0% |
| !!! | TCTTTTACACAATTTTTTTA+AGG | - | chr8_3:49442240-49442259 | Msa1292840:intron | 15.0% |
| !!! | TTTTTTTAAGGAAAATTCTA+TGG | - | chr8_3:49442252-49442271 | Msa1292840:intron | 15.0% |
| !!! | ATTTTTAAATTGTTGATTAC+TGG | + | chr8_3:49442586-49442605 | None:intergenic | 15.0% |
| !!! | CAATGTTTTTAATTTTGTAT+TGG | - | chr8_3:49442778-49442797 | Msa1292840:intron | 15.0% |
| !! | TTAAAAATTGTTTATAAACG+TGG | - | chr8_3:49443369-49443388 | Msa1292840:intron | 15.0% |
| !!! | AATATTTTGTAACAAATCAA+TGG | + | chr8_3:49443639-49443658 | None:intergenic | 15.0% |
| !! | TGAAAAAAAGAAACAAAAAA+GGG | + | chr8_3:49444058-49444077 | None:intergenic | 15.0% |
| !! | AAAAATGAAGGAATAAAAAA+AGG | + | chr8_3:49444194-49444213 | None:intergenic | 15.0% |
| !! | TCTTGTATATTATAACAATT+TGG | + | chr8_3:49444911-49444930 | None:intergenic | 15.0% |
| !! | AATTGTTATAATATACAAGA+AGG | - | chr8_3:49444911-49444930 | Msa1292840:CDS | 15.0% |
| !!! | ATGTATTATTCATTTTCTTA+GGG | + | chr8_3:49444998-49445017 | None:intergenic | 15.0% |
| !!! | TATGTATTATTCATTTTCTT+AGG | + | chr8_3:49444999-49445018 | None:intergenic | 15.0% |
| !!! | ATTTGAGTGTTCTTATATTT+TGG | + | chr8_3:49439891-49439910 | None:intergenic | 20.0% |
| !! | AAAACTAAGAAAAATACCAA+TGG | + | chr8_3:49440342-49440361 | None:intergenic | 20.0% |
| !!! | TCTTCTTTTATTCTTCTAAT+CGG | + | chr8_3:49440554-49440573 | None:intergenic | 20.0% |
| !!! | TCTATGTTAAGTTGTTTTTT+GGG | + | chr8_3:49440791-49440810 | None:intergenic | 20.0% |
| !!! | ATCTATGTTAAGTTGTTTTT+TGG | + | chr8_3:49440792-49440811 | None:intergenic | 20.0% |
| !! | AACTTAACATAGATAGATAA+TGG | - | chr8_3:49440798-49440817 | Msa1292840:intron | 20.0% |
| !!! | ATTTTACGTTAAATGTGTTT+TGG | - | chr8_3:49440882-49440901 | Msa1292840:intron | 20.0% |
| !!! | AAATGGTCAAATTTCTTTTA+CGG | + | chr8_3:49440969-49440988 | None:intergenic | 20.0% |
| !! | AAAAAGGAAAAGAAAACATT+TGG | + | chr8_3:49441233-49441252 | None:intergenic | 20.0% |
| !!! | ATAAAGTACTAACAACAAAT+TGG | - | chr8_3:49441641-49441660 | Msa1292840:CDS | 20.0% |
| !! | TATCAAGAAAAATGGATAAA+TGG | + | chr8_3:49442129-49442148 | None:intergenic | 20.0% |
| !!! | AACAATTAATTTGGAAAGAA+GGG | - | chr8_3:49442204-49442223 | Msa1292840:intron | 20.0% |
| !! | ACGAAAATTCTTAAATTGAT+TGG | - | chr8_3:49442697-49442716 | Msa1292840:intron | 20.0% |
| !! | ATTCTTAAATTGATTGGATT+TGG | - | chr8_3:49442703-49442722 | Msa1292840:intron | 20.0% |
| !! | AAAACATTGATGAAAATGAA+GGG | + | chr8_3:49442767-49442786 | None:intergenic | 20.0% |
| !! | AAAAACATTGATGAAAATGA+AGG | + | chr8_3:49442768-49442787 | None:intergenic | 20.0% |
| !!! | AGTTTAAGTAATTTTTATGC+AGG | - | chr8_3:49442813-49442832 | Msa1292840:intron | 20.0% |
| !! | TCATTAAGCTTATATCAAAT+TGG | + | chr8_3:49443144-49443163 | None:intergenic | 20.0% |
| !! | AAATTGCTTATAAATGTGAT+CGG | + | chr8_3:49443269-49443288 | None:intergenic | 20.0% |
| !!! | AAATCAATGGTTAGTTAATT+TGG | + | chr8_3:49443626-49443645 | None:intergenic | 20.0% |
| !! | GTGAAAAAAAGAAACAAAAA+AGG | + | chr8_3:49444059-49444078 | None:intergenic | 20.0% |
| !! | GTTAAATAAGAGAAAAATGA+AGG | + | chr8_3:49444206-49444225 | None:intergenic | 20.0% |
| !! | GTAAAATACGCAAAATATTA+GGG | + | chr8_3:49444233-49444252 | None:intergenic | 20.0% |
| !! | AGTAAAATACGCAAAATATT+AGG | + | chr8_3:49444234-49444253 | None:intergenic | 20.0% |
| !! | GTATATTATAACAATTTGGA+CGG | + | chr8_3:49444907-49444926 | None:intergenic | 20.0% |
| !! | AATATTCTTCTTTCATTTCT+TGG | - | chr8_3:49445053-49445072 | Msa1292840:five_prime_UTR | 20.0% |
| ! | TTAGATTGTCTTACAAATAC+TGG | - | chr8_3:49439806-49439825 | Msa1292840:CDS | 25.0% |
| !!! | TATTTTTGTTGGATTGGATA+TGG | - | chr8_3:49439839-49439858 | Msa1292840:CDS | 25.0% |
| !!! | ATTTTTGTTGGATTGGATAT+GGG | - | chr8_3:49439840-49439859 | Msa1292840:CDS | 25.0% |
| !!! | TATATTTTGGTTTTGTCCAT+TGG | + | chr8_3:49439878-49439897 | None:intergenic | 25.0% |
| !!! | TTGGTAGAAAAGTTTGATTT+TGG | + | chr8_3:49440064-49440083 | None:intergenic | 25.0% |
| ! | AAAATTGAAACGTGTTAGAA+TGG | - | chr8_3:49440613-49440632 | Msa1292840:intron | 25.0% |
| !! | CTTTTCATTATGGTAAAGTA+TGG | - | chr8_3:49440740-49440759 | Msa1292840:intron | 25.0% |
| !!! | CATAGATAGATAATGGAAAT+TGG | - | chr8_3:49440805-49440824 | Msa1292840:intron | 25.0% |
| !!! | CATATGGTAGTATTTTTTGA+GGG | - | chr8_3:49440833-49440852 | Msa1292840:intron | 25.0% |
| !!! | AGTCCTTTTTCAATTTAAAG+TGG | - | chr8_3:49441483-49441502 | Msa1292840:intron | 25.0% |
| ! | TGACCACTTTAAATTGAAAA+AGG | + | chr8_3:49441489-49441508 | None:intergenic | 25.0% |
| ! | TCACTTCTCAGTTTATTAAT+AGG | - | chr8_3:49441526-49441545 | Msa1292840:intron | 25.0% |
| ! | AAAGAAGTGATTGAATGAAT+TGG | + | chr8_3:49441892-49441911 | None:intergenic | 25.0% |
| ! | ATGACAAGTAAAAAATGAGT+GGG | + | chr8_3:49441940-49441959 | None:intergenic | 25.0% |
| ! | AATGACAAGTAAAAAATGAG+TGG | + | chr8_3:49441941-49441960 | None:intergenic | 25.0% |
| !! | GAACAATTAATTTGGAAAGA+AGG | - | chr8_3:49442203-49442222 | Msa1292840:intron | 25.0% |
| !!! | AGTCATAAGAATGACTTTTT+TGG | - | chr8_3:49442278-49442297 | Msa1292840:intron | 25.0% |
| !! | TACAAGTACTATTTTATCGT+TGG | + | chr8_3:49442514-49442533 | None:intergenic | 25.0% |
| !!! | GATTTGGTTTTGCATTAAAT+AGG | - | chr8_3:49442719-49442738 | Msa1292840:intron | 25.0% |
| ! | TAAGTAAATTGATTGAAGCA+AGG | - | chr8_3:49442890-49442909 | Msa1292840:intron | 25.0% |
| ! | AAGTAAATTGATTGAAGCAA+GGG | - | chr8_3:49442891-49442910 | Msa1292840:intron | 25.0% |
| ! | TTGATATAAGCTTAATGATC+TGG | - | chr8_3:49443146-49443165 | Msa1292840:intron | 25.0% |
| !!! | ATAATCTTCTAAGGTCATTT+TGG | + | chr8_3:49443195-49443214 | None:intergenic | 25.0% |
| ! | AAAATGACCTTAGAAGATTA+TGG | - | chr8_3:49443194-49443213 | Msa1292840:intron | 25.0% |
| ! | AAATGACCTTAGAAGATTAT+GGG | - | chr8_3:49443195-49443214 | Msa1292840:intron | 25.0% |
| ! | AAATTACCCATAATCTTCTA+AGG | + | chr8_3:49443204-49443223 | None:intergenic | 25.0% |
| ! | TTAGAAGATTATGGGTAATT+TGG | - | chr8_3:49443203-49443222 | Msa1292840:intron | 25.0% |
| ! | GTTCAAATGTTAGTGAATTT+AGG | - | chr8_3:49443913-49443932 | Msa1292840:intron | 25.0% |
| ! | AGTAGTAAAGTGAGTAAATA+TGG | + | chr8_3:49443941-49443960 | None:intergenic | 25.0% |
| ! | ATTTACTCACTTTACTACTT+TGG | - | chr8_3:49443942-49443961 | Msa1292840:intron | 25.0% |
| !! | GAAAGAGATAAAAAGCATAA+GGG | + | chr8_3:49444005-49444024 | None:intergenic | 25.0% |
| !! | TGAAAGAGATAAAAAGCATA+AGG | + | chr8_3:49444006-49444025 | None:intergenic | 25.0% |
| !!! | CTTTAAGTTGTAAAAAGCAA+AGG | + | chr8_3:49444146-49444165 | None:intergenic | 25.0% |
| ! | AGTCAAAAAGAAGAAAACAA+AGG | + | chr8_3:49444270-49444289 | None:intergenic | 25.0% |
| ! | ATACAAGAAGGAACTAATAA+TGG | - | chr8_3:49444923-49444942 | Msa1292840:exon | 25.0% |
| ! | TACAAGAAGGAACTAATAAT+GGG | - | chr8_3:49444924-49444943 | Msa1292840:exon | 25.0% |
| AAATATGTTCAGAGAGAGAA+AGG | - | chr8_3:49439735-49439754 | Msa1292840:three_prime_UTR | 30.0% | |
| AATATGTTCAGAGAGAGAAA+GGG | - | chr8_3:49439736-49439755 | Msa1292840:three_prime_UTR | 30.0% | |
| !! | TTTTTGTTGGATTGGATATG+GGG | - | chr8_3:49439841-49439860 | Msa1292840:CDS | 30.0% |
| AATACACACAAACACAAACA+TGG | - | chr8_3:49439950-49439969 | Msa1292840:CDS | 30.0% | |
| AAACAAGGAGAAGAAAATGA+AGG | + | chr8_3:49440004-49440023 | None:intergenic | 30.0% | |
| !! | TTTTCTTCTCCTTGTTTCTT+TGG | - | chr8_3:49440007-49440026 | Msa1292840:CDS | 30.0% |
| GTTTATTCTTCAGAAACAAG+TGG | - | chr8_3:49440038-49440057 | Msa1292840:CDS | 30.0% | |
| AACTTGTGAAACTCTTCATT+TGG | + | chr8_3:49440083-49440102 | None:intergenic | 30.0% | |
| ATGAAGAGTTTCACAAGTTT+AGG | - | chr8_3:49440084-49440103 | Msa1292840:CDS | 30.0% | |
| !! | TTGTTCGGTTTTATGTGTAT+AGG | - | chr8_3:49440427-49440446 | Msa1292840:intron | 30.0% |
| ATGGAAATTGGTAAAGCATA+TGG | - | chr8_3:49440817-49440836 | Msa1292840:intron | 30.0% | |
| !!! | GCATATGGTAGTATTTTTTG+AGG | - | chr8_3:49440832-49440851 | Msa1292840:intron | 30.0% |
| !!! | TTTTTTGAGGGTAAAGCATA+TGG | - | chr8_3:49440845-49440864 | Msa1292840:intron | 30.0% |
| TGGCTTATATAAAATTACGG+TGG | - | chr8_3:49440902-49440921 | Msa1292840:intron | 30.0% | |
| ! | AGACTAACTTTTCTTTTGGA+AGG | + | chr8_3:49440946-49440965 | None:intergenic | 30.0% |
| ACATACTTTAGTCCTTATGT+AGG | + | chr8_3:49441031-49441050 | None:intergenic | 30.0% | |
| TGTATTAATGTGAGACTACA+AGG | + | chr8_3:49441351-49441370 | None:intergenic | 30.0% | |
| CTTCTCAGTTTATTAATAGG+TGG | - | chr8_3:49441529-49441548 | Msa1292840:intron | 30.0% | |
| AAAAGCTAGCATAAATGTGT+GGG | - | chr8_3:49441725-49441744 | Msa1292840:CDS | 30.0% | |
| AATTCAGCTTGTCTCAAATA+TGG | - | chr8_3:49441772-49441791 | Msa1292840:intron | 30.0% | |
| !!! | TTTGCACTGCTTTTTTTAGT+AGG | - | chr8_3:49441910-49441929 | Msa1292840:CDS | 30.0% |
| ! | GATGAATTGATGATACTATG+AGG | + | chr8_3:49442379-49442398 | None:intergenic | 30.0% |
| AGTCTTAAGTTACACTTTGT+GGG | + | chr8_3:49442459-49442478 | None:intergenic | 30.0% | |
| ! | TAGTCTTAAGTTACACTTTG+TGG | + | chr8_3:49442460-49442479 | None:intergenic | 30.0% |
| TTAAAAAAAGGGAGCTTCTA+CGG | + | chr8_3:49442666-49442685 | None:intergenic | 30.0% | |
| TCCAATAAGTGAAGAATCTA+GGG | + | chr8_3:49442867-49442886 | None:intergenic | 30.0% | |
| TAGATTCTTCACTTATTGGA+CGG | - | chr8_3:49442867-49442886 | Msa1292840:intron | 30.0% | |
| ACTAGCAGTAATATTGCTAT+TGG | - | chr8_3:49443082-49443101 | Msa1292840:CDS | 30.0% | |
| TCTCCAACTTCTACATATAA+TGG | - | chr8_3:49443115-49443134 | Msa1292840:intron | 30.0% | |
| TATAAGCTTAATGATCTGGA+AGG | - | chr8_3:49443150-49443169 | Msa1292840:intron | 30.0% | |
| AATACCAGTAGAAACTTAGA+GGG | + | chr8_3:49443236-49443255 | None:intergenic | 30.0% | |
| AAATACCAGTAGAAACTTAG+AGG | + | chr8_3:49443237-49443256 | None:intergenic | 30.0% | |
| GAAAATTTAAGCTGAAAGTG+TGG | - | chr8_3:49443685-49443704 | Msa1292840:intron | 30.0% | |
| TAATGAGACTTCCAAACTAA+TGG | + | chr8_3:49443739-49443758 | None:intergenic | 30.0% | |
| TAGAATTGTAGAAGAAGCAA+AGG | - | chr8_3:49443784-49443803 | Msa1292840:intron | 30.0% | |
| AGAATTGTAGAAGAAGCAAA+GGG | - | chr8_3:49443785-49443804 | Msa1292840:intron | 30.0% | |
| CAACATAAATGACACACAAA+AGG | - | chr8_3:49443857-49443876 | Msa1292840:intron | 30.0% | |
| TGAAGGAATAAAAAAAGGTG+TGG | + | chr8_3:49444189-49444208 | None:intergenic | 30.0% | |
| TGTATCGTTGAAGATTTACT+AGG | - | chr8_3:49444376-49444395 | Msa1292840:intron | 30.0% | |
| GTATCGTTGAAGATTTACTA+GGG | - | chr8_3:49444377-49444396 | Msa1292840:intron | 30.0% | |
| ATCCTTTAAGTGTGTGAATA+GGG | + | chr8_3:49444693-49444712 | None:intergenic | 30.0% | |
| TATCCTTTAAGTGTGTGAAT+AGG | + | chr8_3:49444694-49444713 | None:intergenic | 30.0% | |
| ATAGTGAATACAATGTCAAC+AGG | - | chr8_3:49444743-49444762 | Msa1292840:CDS | 30.0% | |
| TAGTGAATACAATGTCAACA+GGG | - | chr8_3:49444744-49444763 | Msa1292840:CDS | 30.0% | |
| ! | CTTTAGAAATATGCAAGTTG+TGG | - | chr8_3:49444832-49444851 | Msa1292840:CDS | 30.0% |
| TTAGCTACAACATTGAGATT+TGG | + | chr8_3:49444884-49444903 | None:intergenic | 30.0% | |
| !! | TGGGGAAATTACTTTTACTA+TGG | - | chr8_3:49444947-49444966 | Msa1292840:five_prime_UTR | 30.0% |
| !! | GGAAATTACTTTTACTATGG+TGG | - | chr8_3:49444950-49444969 | Msa1292840:five_prime_UTR | 30.0% |
| TTCTTCTTTCATTTCTTGGT+TGG | - | chr8_3:49445057-49445076 | Msa1292840:five_prime_UTR | 30.0% | |
| TCTTCTTTCATTTCTTGGTT+GGG | - | chr8_3:49445058-49445077 | Msa1292840:five_prime_UTR | 30.0% | |
| CTCTCTCTGAACATATTTCA+GGG | + | chr8_3:49439733-49439752 | None:intergenic | 35.0% | |
| TCTCTCTCTGAACATATTTC+AGG | + | chr8_3:49439734-49439753 | None:intergenic | 35.0% | |
| GCAAGAAAACAACACAAATG+TGG | - | chr8_3:49439924-49439943 | Msa1292840:CDS | 35.0% | |
| CATGACAAACCAAAGAAACA+AGG | + | chr8_3:49440019-49440038 | None:intergenic | 35.0% | |
| AAGAGTTTCACAAGTTTAGG+AGG | - | chr8_3:49440087-49440106 | Msa1292840:CDS | 35.0% | |
| CCATAAAAATGCATCTTCGA+CGG | - | chr8_3:49440111-49440130 | Msa1292840:CDS | 35.0% | |
| CAATCTATGATATCACCATC+AGG | + | chr8_3:49440264-49440283 | None:intergenic | 35.0% | |
| TTTATGTGTATAGGATCCTC+CGG | - | chr8_3:49440436-49440455 | Msa1292840:intron | 35.0% | |
| TTTCAATTGTGGAGTTTCTC+AGG | - | chr8_3:49440503-49440522 | Msa1292840:intron | 35.0% | |
| GCTTGCTCTATTAACACATT+TGG | - | chr8_3:49440587-49440606 | Msa1292840:intron | 35.0% | |
| !!! | GTTTCTGTTGTTTTCTGTGA+TGG | + | chr8_3:49440670-49440689 | None:intergenic | 35.0% |
| ! | ACGGAGACTAACTTTTCTTT+TGG | + | chr8_3:49440950-49440969 | None:intergenic | 35.0% |
| !!! | GTGATTTTAGCTCCTACATA+AGG | - | chr8_3:49441016-49441035 | Msa1292840:intron | 35.0% |
| ATTAATGTGAGACTACAAGG+AGG | + | chr8_3:49441348-49441367 | None:intergenic | 35.0% | |
| AAAGTGGTCACTGAATTTCA+TGG | - | chr8_3:49441499-49441518 | Msa1292840:intron | 35.0% | |
| CAAAAGCTAGCATAAATGTG+TGG | - | chr8_3:49441724-49441743 | Msa1292840:CDS | 35.0% | |
| TGAGACAAGCTGAATTCATA+TGG | + | chr8_3:49441768-49441787 | None:intergenic | 35.0% | |
| TCTCAAATATGGATCATCTC+TGG | - | chr8_3:49441783-49441802 | Msa1292840:intron | 35.0% | |
| ATGTCATTGTACAAACAGTG+GGG | + | chr8_3:49442344-49442363 | None:intergenic | 35.0% | |
| GATGTCATTGTACAAACAGT+GGG | + | chr8_3:49442345-49442364 | None:intergenic | 35.0% | |
| TGATGTCATTGTACAAACAG+TGG | + | chr8_3:49442346-49442365 | None:intergenic | 35.0% | |
| TGCTACGCTTATAAAAAGGT+AGG | + | chr8_3:49442435-49442454 | None:intergenic | 35.0% | |
| GTCTTAAGTTACACTTTGTG+GGG | + | chr8_3:49442458-49442477 | None:intergenic | 35.0% | |
| TAGTAATGCTTGCAACATCT+TGG | + | chr8_3:49442540-49442559 | None:intergenic | 35.0% | |
| TGATGAAAATGAAGGGTAGT+TGG | + | chr8_3:49442760-49442779 | None:intergenic | 35.0% | |
| ACCCTAGATTCTTCACTTAT+TGG | - | chr8_3:49442863-49442882 | Msa1292840:intron | 35.0% | |
| GTCCAATAAGTGAAGAATCT+AGG | + | chr8_3:49442868-49442887 | None:intergenic | 35.0% | |
| TAAATTGATTGAAGCAAGGG+AGG | - | chr8_3:49442894-49442913 | Msa1292840:intron | 35.0% | |
| TGCTACAATTTACTTTGCTC+TGG | - | chr8_3:49443049-49443068 | Msa1292840:CDS | 35.0% | |
| CCTCCATTATATGTAGAAGT+TGG | + | chr8_3:49443121-49443140 | None:intergenic | 35.0% | |
| CCAACTTCTACATATAATGG+AGG | - | chr8_3:49443118-49443137 | Msa1292840:intron | 35.0% | |
| ATATCCCTCTAAGTTTCTAC+TGG | - | chr8_3:49443229-49443248 | Msa1292840:intron | 35.0% | |
| TCTCATAGTCAAAGTCTCAA+AGG | - | chr8_3:49443663-49443682 | Msa1292840:intron | 35.0% | |
| ! | AAAGTGCTCAGAAAGAATGA+GGG | + | chr8_3:49444109-49444128 | None:intergenic | 35.0% |
| !! | AGAAGAAAACAAAGGTACCA+AGG | + | chr8_3:49444262-49444281 | None:intergenic | 35.0% |
| TTGCTTCTATTTATGCGTGT+AGG | - | chr8_3:49444601-49444620 | Msa1292840:intron | 35.0% | |
| TATGGATCTGGAAACTTGAT+TGG | - | chr8_3:49444653-49444672 | Msa1292840:CDS | 35.0% | |
| ATGGATCTGGAAACTTGATT+GGG | - | chr8_3:49444654-49444673 | Msa1292840:CDS | 35.0% | |
| ATCCCTATTCACACACTTAA+AGG | - | chr8_3:49444688-49444707 | Msa1292840:CDS | 35.0% | |
| CTTAAAGGATAGTGCAACAA+TGG | - | chr8_3:49444703-49444722 | Msa1292840:CDS | 35.0% | |
| AGTGCAACAATGGTTCAATT+TGG | - | chr8_3:49444713-49444732 | Msa1292840:CDS | 35.0% | |
| AAAATGTCCACTACCCATTT+GGG | + | chr8_3:49444783-49444802 | None:intergenic | 35.0% | |
| ACAACATTGAGATTTGGCAA+GGG | + | chr8_3:49444878-49444897 | None:intergenic | 35.0% | |
| TACAACATTGAGATTTGGCA+AGG | + | chr8_3:49444879-49444898 | None:intergenic | 35.0% | |
| ! | AAGAAGGAACTAATAATGGG+TGG | - | chr8_3:49444927-49444946 | Msa1292840:exon | 35.0% |
| !! | AGAAGGAACTAATAATGGGT+GGG | - | chr8_3:49444928-49444947 | Msa1292840:exon | 35.0% |
| !!! | AGAAAGGGAGAGCATTTTCT+TGG | - | chr8_3:49439751-49439770 | Msa1292840:three_prime_UTR | 40.0% |
| ! | GAGCATTTTCTTGGCTTCAA+AGG | - | chr8_3:49439760-49439779 | Msa1292840:three_prime_UTR | 40.0% |
| !! | GGCTTCAAAGGCTTTGAAAA+TGG | - | chr8_3:49439772-49439791 | Msa1292840:three_prime_UTR | 40.0% |
| ! | TGGGGTTAGATTTGTTCCAA+TGG | - | chr8_3:49439859-49439878 | Msa1292840:CDS | 40.0% |
| GAGAAGAAAATGAAGGAGGA+GGG | + | chr8_3:49439997-49440016 | None:intergenic | 40.0% | |
| CAAGGAGAAGAAAATGAAGG+AGG | + | chr8_3:49440001-49440020 | None:intergenic | 40.0% | |
| ! | CCGTCGAAGATGCATTTTTA+TGG | + | chr8_3:49440114-49440133 | None:intergenic | 40.0% |
| ACCTGAATTGTCTTAACAGC+AGG | + | chr8_3:49440146-49440165 | None:intergenic | 40.0% | |
| AACATAGGATGGTCAAAAGC+TGG | + | chr8_3:49440306-49440325 | None:intergenic | 40.0% | |
| TTTGACCATCCTATGTTGAG+AGG | - | chr8_3:49440309-49440328 | Msa1292840:intron | 40.0% | |
| TTTGTCCTCTCAACATAGGA+TGG | + | chr8_3:49440317-49440336 | None:intergenic | 40.0% | |
| ! | GGTTTTTGTCCTCTCAACAT+AGG | + | chr8_3:49440321-49440340 | None:intergenic | 40.0% |
| GTTGAGAGGACAAAAACCAT+TGG | - | chr8_3:49440323-49440342 | Msa1292840:intron | 40.0% | |
| ! | ACCAAGAGAGCATAAGCAAA+TGG | - | chr8_3:49440463-49440482 | Msa1292840:intron | 40.0% |
| ! | CCAAGAGAGCATAAGCAAAT+GGG | - | chr8_3:49440464-49440483 | Msa1292840:intron | 40.0% |
| ATGCAGTTGGATATGTGAGT+GGG | - | chr8_3:49441685-49441704 | Msa1292840:CDS | 40.0% | |
| CATATGGACTTTCCACTTGT+GGG | + | chr8_3:49441752-49441771 | None:intergenic | 40.0% | |
| TCATATGGACTTTCCACTTG+TGG | + | chr8_3:49441753-49441772 | None:intergenic | 40.0% | |
| ! | TGGATCATCTCTGGTTCATT+TGG | - | chr8_3:49441792-49441811 | Msa1292840:intron | 40.0% |
| GATCTCAATACCATTGAAGC+TGG | - | chr8_3:49441819-49441838 | Msa1292840:intron | 40.0% | |
| TCAATACCATTGAAGCTGGT+TGG | - | chr8_3:49441823-49441842 | Msa1292840:intron | 40.0% | |
| TTGCAGACTGATGCATATCA+AGG | - | chr8_3:49443019-49443038 | Msa1292840:CDS | 40.0% | |
| ACTGATGCATATCAAGGAAC+TGG | - | chr8_3:49443025-49443044 | Msa1292840:CDS | 40.0% | |
| CTGATGCATATCAAGGAACT+GGG | - | chr8_3:49443026-49443045 | Msa1292840:CDS | 40.0% | |
| TGTTTATAAACGTGGCACGA+TGG | - | chr8_3:49443377-49443396 | Msa1292840:intron | 40.0% | |
| ! | CTCATGGACTAAATTGACAC+TGG | + | chr8_3:49443529-49443548 | None:intergenic | 40.0% |
| GTTACTACGCAACAATCTCA+TGG | + | chr8_3:49443545-49443564 | None:intergenic | 40.0% | |
| ! | CAAAGTGCTCAGAAAGAATG+AGG | + | chr8_3:49444110-49444129 | None:intergenic | 40.0% |
| !! | AGAAAACAAAGGTACCAAGG+TGG | + | chr8_3:49444259-49444278 | None:intergenic | 40.0% |
| TCTGACACACATTCAATCTG+AGG | + | chr8_3:49444414-49444433 | None:intergenic | 40.0% | |
| ACATATGCTTGTGTTCGATG+TGG | - | chr8_3:49444440-49444459 | Msa1292840:intron | 40.0% | |
| CTGGAAACTTGATTGGGTAT+TGG | - | chr8_3:49444660-49444679 | Msa1292840:CDS | 40.0% | |
| AAGTGTGTGAATAGGGATGA+TGG | + | chr8_3:49444686-49444705 | None:intergenic | 40.0% | |
| GCAACAATGGTTCAATTTGG+TGG | - | chr8_3:49444716-49444735 | Msa1292840:CDS | 40.0% | |
| TCTCACACTTCTACCCAAAT+GGG | - | chr8_3:49444767-49444786 | Msa1292840:CDS | 40.0% | |
| CAAAATGTCCACTACCCATT+TGG | + | chr8_3:49444784-49444803 | None:intergenic | 40.0% | |
| !! | GAAGGAACTAATAATGGGTG+GGG | - | chr8_3:49444929-49444948 | Msa1292840:exon | 40.0% |
| ! | TACTTTTACTATGGTGGTCC+TGG | - | chr8_3:49444956-49444975 | Msa1292840:five_prime_UTR | 40.0% |
| ! | GGACATTTTACATTCCTTCC+AGG | + | chr8_3:49444977-49444996 | None:intergenic | 40.0% |
| GGAGAAGAAAATGAAGGAGG+AGG | + | chr8_3:49439998-49440017 | None:intergenic | 45.0% | |
| GCCTGCTGTTAAGACAATTC+AGG | - | chr8_3:49440142-49440161 | Msa1292840:CDS | 45.0% | |
| ATATCACCATCAGGACTCTG+CGG | + | chr8_3:49440255-49440274 | None:intergenic | 45.0% | |
| TTATGCTCTCTTGGTCTCTC+CGG | + | chr8_3:49440458-49440477 | None:intergenic | 45.0% | |
| CCCATTTGCTTATGCTCTCT+TGG | + | chr8_3:49440467-49440486 | None:intergenic | 45.0% | |
| TCAGGTGAATCATGTCCAGA+AGG | - | chr8_3:49440521-49440540 | Msa1292840:intron | 45.0% | |
| CTAATCGGAATCGTTCCTTC+TGG | + | chr8_3:49440539-49440558 | None:intergenic | 45.0% | |
| ! | AGACTACAAGGAGGATTGGT+TGG | + | chr8_3:49441339-49441358 | None:intergenic | 45.0% |
| TGTGAGACTACAAGGAGGAT+TGG | + | chr8_3:49441343-49441362 | None:intergenic | 45.0% | |
| AATGATGCACAGCATGCAGT+TGG | - | chr8_3:49441672-49441691 | Msa1292840:CDS | 45.0% | |
| CATGCAGTTGGATATGTGAG+TGG | - | chr8_3:49441684-49441703 | Msa1292840:CDS | 45.0% | |
| GTGAGTGGGAATGAGTACTA+TGG | - | chr8_3:49441699-49441718 | Msa1292840:CDS | 45.0% | |
| ! | GGGGTGCTACGCTTATAAAA+AGG | + | chr8_3:49442439-49442458 | None:intergenic | 45.0% |
| ATTGATTGAAGCAAGGGAGG+TGG | - | chr8_3:49442897-49442916 | Msa1292840:intron | 45.0% | |
| AGGTGTGGCGTTCAGAATTA+TGG | + | chr8_3:49444174-49444193 | None:intergenic | 45.0% | |
| ! | GCGTATTTTACTCACCACCT+TGG | - | chr8_3:49444242-49444261 | Msa1292840:CDS | 45.0% |
| AGGATCCAAAGCATGGGAAT+TGG | - | chr8_3:49444621-49444640 | Msa1292840:intron | 45.0% | |
| ATCCAAAGCATGGGAATTGG+TGG | - | chr8_3:49444624-49444643 | Msa1292840:intron | 45.0% | |
| ! | GGGAATTGGTGGCTTGAATA+TGG | - | chr8_3:49444635-49444654 | Msa1292840:CDS | 45.0% |
| TGGTGGCTTGAATATGGATC+TGG | - | chr8_3:49444641-49444660 | Msa1292840:CDS | 45.0% | |
| GTCTCACACTTCTACCCAAA+TGG | - | chr8_3:49444766-49444785 | Msa1292840:CDS | 45.0% | |
| ACTTCTACCCAAATGGGTAG+TGG | - | chr8_3:49444773-49444792 | Msa1292840:CDS | 45.0% | |
| !! | TAGTGGACATTTTGCTGAGG+AGG | - | chr8_3:49444790-49444809 | Msa1292840:CDS | 45.0% |
| ! | AGTGGACATTTTGCTGAGGA+GGG | - | chr8_3:49444791-49444810 | Msa1292840:CDS | 45.0% |
| TTTACTATGGTGGTCCTGGA+AGG | - | chr8_3:49444960-49444979 | Msa1292840:five_prime_UTR | 45.0% | |
| !! | TAAAAAAATATAGTATAAAA+AGG | + | chr8_3:49441249-49441268 | None:intergenic | 5.0% |
| !!! | TAAATACATTTTTTATTAAT+GGG | + | chr8_3:49442974-49442993 | None:intergenic | 5.0% |
| !!! | TTAAATACATTTTTTATTAA+TGG | + | chr8_3:49442975-49442994 | None:intergenic | 5.0% |
| ! | GTTTTTCCGCAGAGTCCTGA+TGG | - | chr8_3:49440246-49440265 | Msa1292840:intron | 50.0% |
| CGTGTTAGAATGGACACCAC+CGG | - | chr8_3:49440623-49440642 | Msa1292840:intron | 50.0% | |
| TTGTACCTCATGTCCATCGC+CGG | + | chr8_3:49440645-49440664 | None:intergenic | 50.0% | |
| AAATGTGTGGGTCCCACAAG+TGG | - | chr8_3:49441737-49441756 | Msa1292840:CDS | 50.0% | |
| TACCATTGAAGCTGGTTGGC+AGG | - | chr8_3:49441827-49441846 | Msa1292840:intron | 50.0% | |
| AGCTATCCCCATAGAGCTCT+GGG | + | chr8_3:49442843-49442862 | None:intergenic | 50.0% | |
| TAGCTATCCCCATAGAGCTC+TGG | + | chr8_3:49442844-49442863 | None:intergenic | 50.0% | |
| ! | CATGGGGCACTCCATTAGTT+TGG | - | chr8_3:49443725-49443744 | Msa1292840:intron | 50.0% |
| TGCGTGTAGGATCCAAAGCA+TGG | - | chr8_3:49444614-49444633 | Msa1292840:intron | 50.0% | |
| GCGTGTAGGATCCAAAGCAT+GGG | - | chr8_3:49444615-49444634 | Msa1292840:intron | 50.0% | |
| AGCCACCAATTCCCATGCTT+TGG | + | chr8_3:49444629-49444648 | None:intergenic | 50.0% | |
| !!! | GGGTAGTGGACATTTTGCTG+AGG | - | chr8_3:49444787-49444806 | Msa1292840:CDS | 50.0% |
| GAAGGAGGAGGGAGATGACT+GGG | + | chr8_3:49439986-49440005 | None:intergenic | 55.0% | |
| TGAAGGAGGAGGGAGATGAC+TGG | + | chr8_3:49439987-49440006 | None:intergenic | 55.0% | |
| TGCCTGCCAACCAGCTTCAA+TGG | + | chr8_3:49441832-49441851 | None:intergenic | 55.0% | |
| AGGTCAGCCCAGAGCTCTAT+GGG | - | chr8_3:49442833-49442852 | Msa1292840:intron | 55.0% | |
| TGCTCTCTTGGTCTCTCCGG+AGG | + | chr8_3:49440455-49440474 | None:intergenic | 60.0% | |
| AGAATGGACACCACCGGCGA+TGG | - | chr8_3:49440629-49440648 | Msa1292840:intron | 60.0% | |
| TACCTCATGTCCATCGCCGG+TGG | + | chr8_3:49440642-49440661 | None:intergenic | 60.0% | |
| CAGGTCAGCCCAGAGCTCTA+TGG | - | chr8_3:49442832-49442851 | Msa1292840:intron | 60.0% | |
| GGTCAGCCCAGAGCTCTATG+GGG | - | chr8_3:49442834-49442853 | Msa1292840:intron | 60.0% | |
| CACCACCGGCGATGGACATG+AGG | - | chr8_3:49440637-49440656 | Msa1292840:intron | 65.0% | |
| TTTGTGTGCGCGCGCGCGTT+TGG | - | chr8_3:49444552-49444571 | Msa1292840:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 49439713 | 49445081 | 49439713 | ID=Msa1292840;Name=Msa1292840 |
| chr8_3 | mRNA | 49439713 | 49445081 | 49439713 | ID=Msa1292840-mRNA-1;Parent=Msa1292840;Name=Msa1292840-mRNA-1;_AED=0.06;_eAED=0.06;_QI=145|1|1|1|1|1|7|81|448 |
| chr8_3 | exon | 49439713 | 49440171 | 49439713 | ID=Msa1292840-mRNA-1:exon:13737;Parent=Msa1292840-mRNA-1 |
| chr8_3 | exon | 49441623 | 49441769 | 49441623 | ID=Msa1292840-mRNA-1:exon:13736;Parent=Msa1292840-mRNA-1 |
| chr8_3 | exon | 49441906 | 49441959 | 49441906 | ID=Msa1292840-mRNA-1:exon:13735;Parent=Msa1292840-mRNA-1 |
| chr8_3 | exon | 49442946 | 49443110 | 49442946 | ID=Msa1292840-mRNA-1:exon:13734;Parent=Msa1292840-mRNA-1 |
| chr8_3 | exon | 49444136 | 49444345 | 49444136 | ID=Msa1292840-mRNA-1:exon:13733;Parent=Msa1292840-mRNA-1 |
| chr8_3 | exon | 49444450 | 49444536 | 49444450 | ID=Msa1292840-mRNA-1:exon:13732;Parent=Msa1292840-mRNA-1 |
| chr8_3 | exon | 49444631 | 49445081 | 49444631 | ID=Msa1292840-mRNA-1:exon:13731;Parent=Msa1292840-mRNA-1 |
| chr8_3 | five_prime_UTR | 49444937 | 49445081 | 49444937 | ID=Msa1292840-mRNA-1:five_prime_utr;Parent=Msa1292840-mRNA-1 |
| chr8_3 | CDS | 49444631 | 49444936 | 49444631 | ID=Msa1292840-mRNA-1:cds;Parent=Msa1292840-mRNA-1 |
| chr8_3 | CDS | 49444450 | 49444536 | 49444450 | ID=Msa1292840-mRNA-1:cds;Parent=Msa1292840-mRNA-1 |
| chr8_3 | CDS | 49444136 | 49444345 | 49444136 | ID=Msa1292840-mRNA-1:cds;Parent=Msa1292840-mRNA-1 |
| chr8_3 | CDS | 49442946 | 49443110 | 49442946 | ID=Msa1292840-mRNA-1:cds;Parent=Msa1292840-mRNA-1 |
| chr8_3 | CDS | 49441906 | 49441959 | 49441906 | ID=Msa1292840-mRNA-1:cds;Parent=Msa1292840-mRNA-1 |
| chr8_3 | CDS | 49441623 | 49441769 | 49441623 | ID=Msa1292840-mRNA-1:cds;Parent=Msa1292840-mRNA-1 |
| chr8_3 | CDS | 49439794 | 49440171 | 49439794 | ID=Msa1292840-mRNA-1:cds;Parent=Msa1292840-mRNA-1 |
| chr8_3 | three_prime_UTR | 49439713 | 49439793 | 49439713 | ID=Msa1292840-mRNA-1:three_prime_utr;Parent=Msa1292840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
