AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0367140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0367140 MtrunA17_Chr3g0108261 100.000 148 0 0 1 148 1 148 5.28e-110 308
Msa0367140 MtrunA17_Chr5g0432831 98.649 148 2 0 1 148 1 148 1.15e-108 305
Msa0367140 MtrunA17_Chr7g0275361 97.297 148 4 0 1 148 1 148 2.12e-107 302
Msa0367140 MtrunA17_Chr8g0369311 93.919 148 9 0 1 148 57 204 1.02e-103 295
Msa0367140 MtrunA17_Chr1g0154011 91.892 148 12 0 1 148 1 148 4.66e-103 291
Msa0367140 MtrunA17_Chr4g0037011 91.892 148 12 0 1 148 1 148 5.03e-103 291
Msa0367140 MtrunA17_Chr8g0378601 51.034 145 71 0 2 146 23 167 5.60e-55 170
Msa0367140 MtrunA17_Chr2g0316201 48.966 145 74 0 4 148 8 152 1.14e-47 151
Msa0367140 MtrunA17_Chr2g0316211 48.611 144 74 0 5 148 9 152 1.22e-46 148
Msa0367140 MtrunA17_Chr4g0060351 45.890 146 74 1 2 142 5 150 3.03e-45 145
Msa0367140 MtrunA17_Chr8g0362321 45.205 146 75 1 2 142 5 150 4.64e-45 144
Msa0367140 MtrunA17_Chr3g0131871 48.611 144 72 2 5 146 6 149 3.81e-42 138
Msa0367140 MtrunA17_Chr3g0139901 40.136 147 84 3 5 147 7 153 3.41e-34 117
Msa0367140 MtrunA17_Chr4g0038891 44.355 124 69 0 4 127 35 158 6.03e-34 117
Msa0367140 MtrunA17_Chr1g0199951 45.669 127 68 1 3 128 43 169 5.00e-33 115
Msa0367140 MtrunA17_Chr5g0396451 41.406 128 75 0 4 131 35 162 3.75e-32 112
Msa0367140 MtrunA17_Chr4g0053191 36.842 152 89 2 1 145 4 155 1.66e-30 107
Msa0367140 MtrunA17_Chr4g0031181 35.821 134 72 2 15 134 18 151 2.23e-27 100
Msa0367140 MtrunA17_Chr5g0401831 33.553 152 94 2 1 145 4 155 3.44e-27 99.4
Msa0367140 MtrunA17_Chr8g0348701 37.398 123 75 2 26 146 25 147 7.68e-27 99.4
Msa0367140 MtrunA17_Chr5g0403591 36.765 136 83 2 5 139 33 166 2.15e-26 98.2
Msa0367140 MtrunA17_Chr7g0254701 34.965 143 93 0 4 146 13 155 2.55e-25 97.4
Msa0367140 MtrunA17_Chr8g0387131 35.036 137 87 2 12 146 11 147 4.13e-25 94.7
Msa0367140 MtrunA17_Chr2g0328001 34.028 144 81 2 15 144 18 161 6.95e-25 93.6
Msa0367140 MtrunA17_Chr4g0059291 30.894 123 83 2 26 146 25 147 2.41e-22 87.8
Msa0367140 MtrunA17_Chr8g0372391 38.835 103 61 2 1 102 15 116 3.67e-19 79.0
Msa0367140 MtrunA17_Chr4g0068301 34.454 119 68 4 2 114 11 125 2.13e-18 79.3
Msa0367140 MtrunA17_Chr8g0376111 31.373 153 87 5 4 144 43 189 3.56e-18 79.3
Msa0367140 MtrunA17_Chr5g0404931 36.893 103 63 2 1 102 15 116 5.90e-18 75.5
Msa0367140 MtrunA17_Chr7g0233631 36.885 122 67 3 4 115 38 159 3.02e-17 76.6
Msa0367140 MtrunA17_Chr7g0233611 36.885 122 67 3 4 115 38 159 6.76e-17 75.5
Msa0367140 MtrunA17_Chr8g0345331 32.479 117 70 3 4 115 8 120 5.17e-16 72.0
Msa0367140 MtrunA17_Chr7g0222941 30.894 123 75 3 3 115 90 212 7.54e-15 68.9
Msa0367140 MtrunA17_Chr4g0047301 30.667 150 91 4 4 143 672 818 1.20e-14 70.1
Msa0367140 MtrunA17_Chr4g0045101 32.787 122 72 3 4 115 37 158 3.41e-14 68.2
Msa0367140 MtrunA17_Chr2g0282211 28.289 152 96 4 3 144 681 829 1.05e-13 67.4
Msa0367140 MtrunA17_Chr1g0186291 29.293 99 56 2 43 140 30 115 8.78e-13 61.6
Msa0367140 MtrunA17_Chr2g0317631 30.081 123 76 3 3 115 306 428 1.24e-12 64.3
Msa0367140 MtrunA17_Chr8g0376201 31.707 123 74 3 3 115 192 314 2.39e-12 63.2
Msa0367140 MtrunA17_Chr1g0198021 28.455 123 78 3 3 115 137 259 3.16e-12 62.8
Msa0367140 MtrunA17_Chr1g0211131 29.508 122 76 3 4 115 823 944 5.52e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0367140 AT5G41700.5 96.622 148 5 0 1 148 1 148 2.45e-107 302
Msa0367140 AT5G41700.2 96.622 148 5 0 1 148 1 148 2.45e-107 302
Msa0367140 AT5G41700.1 96.622 148 5 0 1 148 1 148 2.45e-107 302
Msa0367140 AT1G64230.2 95.946 148 6 0 1 148 1 148 2.77e-107 302
Msa0367140 AT1G64230.1 95.946 148 6 0 1 148 1 148 2.77e-107 302
Msa0367140 AT5G53300.2 95.946 148 6 0 1 148 1 148 8.38e-107 301
Msa0367140 AT5G53300.4 95.946 148 6 0 1 148 1 148 8.38e-107 301
Msa0367140 AT5G53300.1 95.946 148 6 0 1 148 1 148 8.38e-107 301
Msa0367140 AT4G27960.1 95.270 148 7 0 1 148 1 148 1.73e-106 300
Msa0367140 AT4G27960.2 95.270 148 7 0 1 148 31 178 5.81e-106 300
Msa0367140 AT3G08690.2 93.919 148 9 0 1 148 1 148 6.12e-105 296
Msa0367140 AT3G08690.1 93.919 148 9 0 1 148 1 148 6.12e-105 296
Msa0367140 AT5G41700.4 95.302 149 6 1 1 148 1 149 1.58e-104 295
Msa0367140 AT1G64230.3 89.809 157 7 1 1 148 1 157 1.05e-102 291
Msa0367140 AT5G56150.1 89.189 148 16 0 1 148 1 148 1.26e-100 285
Msa0367140 AT2G16740.1 87.755 147 18 0 1 147 1 147 7.55e-99 281
Msa0367140 AT1G64230.5 74.211 190 7 1 1 148 1 190 2.92e-98 281
Msa0367140 AT1G64230.4 74.211 190 7 1 1 148 1 190 2.92e-98 281
Msa0367140 AT3G08700.2 79.195 149 30 1 1 148 1 149 3.19e-87 251
Msa0367140 AT3G08700.1 79.195 149 30 1 1 148 1 149 3.19e-87 251
Msa0367140 AT5G41700.3 96.154 104 4 0 1 104 1 104 1.37e-72 214
Msa0367140 AT5G53300.3 93.578 109 5 1 1 107 1 109 9.94e-72 211
Msa0367140 AT5G56150.2 87.379 103 13 0 1 103 1 103 3.66e-66 197
Msa0367140 AT3G13550.1 48.276 145 75 0 2 146 37 181 2.36e-53 167
Msa0367140 AT1G16890.2 49.655 145 73 0 4 148 8 152 3.27e-48 153
Msa0367140 AT1G78870.2 48.966 145 74 0 4 148 8 152 2.97e-47 150
Msa0367140 AT5G62540.1 49.254 134 68 0 2 135 5 138 7.75e-46 147
Msa0367140 AT1G16890.3 47.403 154 72 1 4 148 8 161 1.50e-45 146
Msa0367140 AT1G14400.1 46.575 146 73 1 2 142 5 150 1.66e-45 146
Msa0367140 AT1G14400.2 46.575 146 73 1 2 142 5 150 1.66e-45 146
Msa0367140 AT2G02760.1 45.890 146 74 1 2 142 5 150 3.63e-45 145
Msa0367140 AT2G02760.2 45.890 146 74 1 2 142 5 150 3.63e-45 145
Msa0367140 AT2G02760.4 45.890 146 74 1 2 142 5 150 3.63e-45 145
Msa0367140 AT2G02760.3 45.890 146 74 1 2 142 5 150 3.63e-45 145
Msa0367140 AT1G36340.2 48.966 145 73 1 2 146 9 152 3.82e-45 145
Msa0367140 AT1G36340.1 48.966 145 73 1 2 146 9 152 3.82e-45 145
Msa0367140 AT3G13550.2 50.000 114 57 0 2 115 37 150 2.99e-42 138
Msa0367140 AT1G16890.1 52.101 119 57 0 30 148 1 119 4.40e-41 134
Msa0367140 AT1G78870.4 52.101 119 57 0 30 148 1 119 7.69e-41 133
Msa0367140 AT5G50870.1 45.833 144 76 2 5 146 6 149 1.88e-39 132
Msa0367140 AT1G78870.1 51.667 120 57 1 30 148 1 120 4.60e-39 128
Msa0367140 AT2G32790.1 49.342 152 68 4 2 148 30 177 2.34e-36 123
Msa0367140 AT5G50870.2 42.581 155 76 3 5 146 6 160 4.83e-36 123
Msa0367140 AT3G24515.1 44.586 157 74 3 3 146 8 164 2.26e-35 126
Msa0367140 AT3G24515.3 46.721 122 61 1 29 146 68 189 1.01e-32 120
Msa0367140 AT5G25760.1 38.776 147 86 3 5 147 7 153 1.11e-32 113
Msa0367140 AT5G25760.2 38.776 147 86 3 5 147 7 153 1.11e-32 113
Msa0367140 AT1G78870.3 48.571 105 54 0 4 108 8 112 2.15e-32 111
Msa0367140 AT3G20060.1 42.742 124 71 0 4 127 39 162 7.40e-31 109
Msa0367140 AT1G50490.1 43.548 124 70 0 4 127 38 161 2.22e-30 108
Msa0367140 AT3G20060.2 43.636 110 62 0 22 131 12 121 2.80e-29 104
Msa0367140 AT2G46030.5 36.486 148 91 3 1 146 1 147 2.64e-28 103
Msa0367140 AT2G46030.1 36.486 148 91 3 1 146 1 147 2.64e-28 103
Msa0367140 AT3G57870.1 34.868 152 92 2 1 145 5 156 4.56e-28 102
Msa0367140 AT2G46030.3 36.486 148 91 3 1 146 73 219 6.57e-28 103
Msa0367140 AT5G05080.2 37.063 143 90 0 4 146 13 155 8.50e-28 103
Msa0367140 AT5G05080.3 37.063 143 90 0 4 146 13 155 8.50e-28 103
Msa0367140 AT5G05080.1 37.063 143 90 0 4 146 13 155 8.50e-28 103
Msa0367140 AT5G05080.4 37.063 143 90 0 4 146 13 155 8.50e-28 103
Msa0367140 AT2G46030.4 39.024 123 73 2 26 146 28 150 9.73e-28 102
Msa0367140 AT2G46030.2 39.024 123 73 2 26 146 28 150 9.73e-28 102
Msa0367140 AT3G55380.1 36.567 134 71 2 15 134 19 152 8.26e-27 99.0
Msa0367140 AT5G41340.1 38.211 123 74 2 26 146 25 147 1.03e-26 99.4
Msa0367140 AT1G63800.2 38.211 123 74 2 26 146 10 132 1.22e-26 98.6
Msa0367140 AT1G63800.1 38.211 123 74 2 26 146 25 147 1.33e-26 99.0
Msa0367140 AT5G59300.1 34.722 144 80 2 15 144 18 161 2.36e-25 95.1
Msa0367140 AT4G36800.2 35.036 137 84 3 5 139 34 167 4.15e-25 95.1
Msa0367140 AT4G36800.1 35.036 137 84 3 5 139 34 167 4.15e-25 95.1
Msa0367140 AT3G46460.1 34.028 144 81 2 15 144 18 161 4.23e-25 94.7
Msa0367140 AT5G41340.2 40.385 104 60 2 45 146 9 112 1.42e-23 90.1
Msa0367140 AT2G18600.1 35.036 137 84 3 5 139 35 168 2.65e-23 90.5
Msa0367140 AT2G18600.2 35.036 137 84 3 5 139 35 168 2.65e-23 90.5
Msa0367140 AT3G17000.1 36.975 119 65 4 2 114 12 126 2.08e-20 85.5
Msa0367140 AT3G55380.2 28.994 169 72 3 15 135 19 187 1.33e-19 81.3
Msa0367140 AT1G75440.1 38.889 108 60 3 1 107 15 117 8.37e-19 78.2
Msa0367140 AT1G45050.1 37.864 103 62 2 1 102 15 116 2.80e-18 77.0
Msa0367140 AT5G42990.1 38.835 103 61 2 1 102 15 116 4.39e-18 76.3
Msa0367140 AT1G17280.9 34.188 117 68 3 4 115 8 120 3.63e-17 75.5
Msa0367140 AT1G17280.7 34.188 117 68 3 4 115 8 120 3.63e-17 75.5
Msa0367140 AT1G17280.6 34.188 117 68 3 4 115 8 120 3.63e-17 75.5
Msa0367140 AT1G17280.2 34.188 117 68 3 4 115 8 120 3.63e-17 75.5
Msa0367140 AT1G17280.5 34.188 117 68 3 4 115 8 120 3.63e-17 75.5
Msa0367140 AT1G17280.3 34.188 117 68 3 4 115 8 120 3.63e-17 75.5
Msa0367140 AT1G17280.1 34.188 117 68 3 4 115 8 120 3.63e-17 75.5
Msa0367140 AT1G17280.8 34.188 117 68 3 4 115 8 120 3.63e-17 75.5
Msa0367140 AT4G36410.1 35.185 108 64 3 1 107 15 117 3.70e-17 73.9
Msa0367140 AT5G50430.1 34.188 117 68 3 4 115 8 120 4.45e-17 75.5
Msa0367140 AT5G50430.2 34.188 117 68 3 4 115 8 120 4.45e-17 75.5
Msa0367140 AT3G46460.3 30.631 111 64 1 47 144 9 119 1.19e-16 71.6
Msa0367140 AT3G46460.2 30.631 111 64 1 47 144 9 119 1.19e-16 71.6
Msa0367140 AT1G17280.4 31.707 123 69 3 4 115 8 126 8.56e-16 72.0
Msa0367140 AT3G15355.1 28.289 152 96 4 3 144 334 482 1.17e-11 61.6
Msa0367140 AT1G45050.2 34.831 89 56 2 1 88 15 102 1.27e-11 58.5
Msa0367140 AT1G53025.2 30.328 122 75 3 4 115 274 395 2.75e-11 60.5
Msa0367140 AT1G53025.1 30.328 122 75 3 4 115 274 395 3.07e-11 60.5
Msa0367140 AT1G53023.1 31.148 122 74 3 4 115 60 181 6.51e-11 59.3

Find 89 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGAGAGAATGAGAGAAAA+AGG 0.204795 3_1:+62684022 None:intergenic
CAATACTGCAGGTTGCATTT+AGG 0.246319 3_1:-62682082 Msa0367140:intron
CTTCCATTGCTGTTGATGTT+TGG 0.284673 3_1:+62682044 None:intergenic
AAACGAAAGAAGGGATAATA+AGG 0.289702 3_1:+62684001 None:intergenic
TTGTACATATGTGCAATTTC+AGG 0.297625 3_1:+62681282 None:intergenic
TTCCATTGCTGTTGATGTTT+GGG 0.299216 3_1:+62682045 None:intergenic
ACACGGTCCATGCAATAAAA+TGG 0.325776 3_1:+62680699 None:intergenic
AATACCTTTGGTGGCTTGAA+TGG 0.326318 3_1:+62683347 None:intergenic
ATTTGTATACCAACATTATA+AGG 0.326922 3_1:-62680724 Msa0367140:three_prime_UTR
TTATTGCATGGACCGTGTTT+TGG 0.328281 3_1:-62680694 None:intergenic
ATCTTCTCTGTTTGTCGTAA+TGG 0.356690 3_1:+62684079 None:intergenic
GTGAAAATTGTTAAGACATC+TGG 0.358055 3_1:-62681060 Msa0367140:three_prime_UTR
TATTTGTCTCGACATTCTTA+AGG 0.371764 3_1:-62682021 Msa0367140:CDS
GTCAATCTGCTCATTGTTGA+CGG 0.386180 3_1:-62681331 Msa0367140:CDS
TTTAACAGCGAAGGAGGAAT+TGG 0.399882 3_1:+62681195 None:intergenic
GCGTGCGGTGGCTTCATACT+TGG 0.404055 3_1:+62681248 None:intergenic
ATTAGGGTTGAAATTGAAAA+GGG 0.420801 3_1:+62683950 None:intergenic
CACAAGCGGATCATCGGGAT+TGG 0.422793 3_1:+62681305 None:intergenic
TTCATTTATCATCGCTGCTT+GGG 0.423487 3_1:+62681006 None:intergenic
TGTCGTAATGGAATGTGTTT+GGG 0.427923 3_1:+62684091 None:intergenic
TTGTCGTAATGGAATGTGTT+TGG 0.428517 3_1:+62684090 None:intergenic
CTAAAATCAAACCTTGGAAA+TGG 0.452900 3_1:+62681977 None:intergenic
TCAGGCACAAGCGGATCATC+GGG 0.454366 3_1:+62681300 None:intergenic
ATGAAGCCACCGCACGCAGC+TGG 0.456609 3_1:-62681242 Msa0367140:CDS
TAGGGTTTCAATACCTTTGG+TGG 0.458014 3_1:+62683338 None:intergenic
GATTAGGGTTGAAATTGAAA+AGG 0.459907 3_1:+62683949 None:intergenic
TTTGTTTATATGTTATCTGC+TGG 0.463714 3_1:-62680917 Msa0367140:three_prime_UTR
TTTCATTTATCATCGCTGCT+TGG 0.470863 3_1:+62681005 None:intergenic
TTTATATGTTATCTGCTGGT+TGG 0.473729 3_1:-62680913 Msa0367140:three_prime_UTR
AACAAACATAATTCAATCTC+AGG 0.474332 3_1:+62680934 None:intergenic
TGGAACTCAACCATGGCAAT+GGG 0.477736 3_1:-62681099 Msa0367140:three_prime_UTR
GCAGGTTGCATTTAGGACTA+AGG 0.478226 3_1:-62682075 Msa0367140:intron
ACCTTGGAAATGGTCAGTGC+AGG 0.479512 3_1:+62681987 None:intergenic
TCATTGGCAAGCAACAATCA+TGG 0.479981 3_1:-62683435 Msa0367140:CDS
TTGTTGGTCCATCTGTTGAC+CGG 0.483504 3_1:-62680834 Msa0367140:three_prime_UTR
TTCAGGCACAAGCGGATCAT+CGG 0.486896 3_1:+62681299 None:intergenic
TCTCTCCTTTGATTTGAGCA+TGG 0.491204 3_1:-62683916 Msa0367140:exon
GTGACCTTACCTTACGCAAA+AGG 0.491996 3_1:-62684199 None:intergenic
ACAAGCGGATCATCGGGATT+GGG 0.493920 3_1:+62681306 None:intergenic
TGGCTGAGGACATGTTTCAT+TGG 0.495052 3_1:-62683451 Msa0367140:CDS
GGTGGCTTGAATGGATAATC+CGG 0.498996 3_1:+62683356 None:intergenic
AAAATGGCTCCTTATAATGT+TGG 0.503485 3_1:+62680715 None:intergenic
TGACCGGTACCAGCTTCAAC+TGG 0.505717 3_1:-62680818 Msa0367140:three_prime_UTR
CATTGCTGTTGATGTTTGGG+TGG 0.507557 3_1:+62682048 None:intergenic
CATTGGCAAGCAACAATCAT+GGG 0.510542 3_1:-62683434 Msa0367140:CDS
CCCTGCACTGACCATTTCCA+AGG 0.514922 3_1:-62681988 Msa0367140:intron
CCACCAACATCATGCAGTGC+AGG 0.515198 3_1:-62683849 Msa0367140:intron
CCAGCATAGGGGCTATCAGC+AGG 0.520199 3_1:+62683410 None:intergenic
ATGGAACTCAACCATGGCAA+TGG 0.520736 3_1:-62681100 Msa0367140:three_prime_UTR
CCTGCACTGCATGATGTTGG+TGG 0.521666 3_1:+62683849 None:intergenic
CCTGCTGATAGCCCCTATGC+TGG 0.528822 3_1:-62683410 Msa0367140:CDS
ATTTGAGCATGGCATCGAAA+CGG 0.533369 3_1:-62683905 Msa0367140:exon
CTGTGTCCAGCTGCGTGCGG+TGG 0.538680 3_1:+62681236 None:intergenic
CACATATGTACAAGACTGAC+AGG 0.541007 3_1:-62681272 Msa0367140:CDS
CGATGCCATGCTCAAATCAA+AGG 0.543280 3_1:+62683911 None:intergenic
AGCTGGTACCGGTCAACAGA+TGG 0.565098 3_1:+62680826 None:intergenic
TTACATAAAACATAAATGCA+CGG 0.568066 3_1:+62681167 None:intergenic
TCACCTGCACTGCATGATGT+TGG 0.572393 3_1:+62683846 None:intergenic
CACCCAAACATCAACAGCAA+TGG 0.573454 3_1:-62682047 Msa0367140:CDS
TGAAACATGTCCTCAGCCAC+AGG 0.579671 3_1:+62683455 None:intergenic
TAAGCTATAGACATATGAGT+GGG 0.581170 3_1:+62680778 None:intergenic
GTACCAGTTGAAGCTGGTAC+CGG 0.581776 3_1:+62680815 None:intergenic
AAGACTGTACCAGTTGAAGC+TGG 0.584229 3_1:+62680809 None:intergenic
CCTTGGAAATGGTCAGTGCA+GGG 0.590131 3_1:+62681988 None:intergenic
ATAATCAATTCCCATTGCCA+TGG 0.591438 3_1:+62681089 None:intergenic
CTGGACACAGAAGTATGCCA+TGG 0.597546 3_1:-62681223 Msa0367140:CDS
GCAAATCCTTGAGCTCCTTG+AGG 0.601494 3_1:+62683880 None:intergenic
ACGGTTGCATTTAACAGCGA+AGG 0.603135 3_1:+62681186 None:intergenic
GTTGCATTTAACAGCGAAGG+AGG 0.604567 3_1:+62681189 None:intergenic
GGGTTTGATTGAAATTGAAG+AGG 0.605266 3_1:+62683970 None:intergenic
ACGGATCCTCAAGGAGCTCA+AGG 0.606874 3_1:-62683886 Msa0367140:CDS
GCTGATAGCCCCTATGCTGG+TGG 0.620584 3_1:-62683407 Msa0367140:CDS
AGGAGGAATTGGTCATCCCA+TGG 0.622867 3_1:+62681206 None:intergenic
TCGACATTCTTAAGGAACAA+TGG 0.626316 3_1:-62682013 Msa0367140:CDS
GGAGCTCAAGGATTTGCAGA+AGG 0.628349 3_1:-62683874 Msa0367140:CDS
TTTGTTATTTATTGTCAACA+TGG 0.637302 3_1:-62681119 Msa0367140:three_prime_UTR
TGTGCAATTTCAGGCACAAG+CGG 0.639349 3_1:+62681291 None:intergenic
GAAAATTGTAGTTACGAACA+TGG 0.643887 3_1:-62680986 Msa0367140:three_prime_UTR
GGCATCGAAACGGATCCTCA+AGG 0.650007 3_1:-62683895 Msa0367140:CDS
TTATCCATTCAAGCCACCAA+AGG 0.651286 3_1:-62683351 Msa0367140:intron
TGGACACAGAAGTATGCCAT+GGG 0.652544 3_1:-62681222 Msa0367140:CDS
TTAAGCTATAGACATATGAG+TGG 0.658008 3_1:+62680777 None:intergenic
AGGAACAATGAAACATCCAC+AGG 0.663163 3_1:+62680954 None:intergenic
AACATGGTGATTATTGCCTG+TGG 0.665031 3_1:-62680970 Msa0367140:three_prime_UTR
GGCTTGAATGGATAATCCGG+AGG 0.679274 3_1:+62683359 None:intergenic
GTCAACATGGAACTCAACCA+TGG 0.686063 3_1:-62681106 Msa0367140:three_prime_UTR
CTTCTGTGTCCAGCTGCGTG+CGG 0.688818 3_1:+62681233 None:intergenic
AAAACACACCACCAGCATAG+GGG 0.699264 3_1:+62683399 None:intergenic
AAGCTATAGACATATGAGTG+GGG 0.711204 3_1:+62680779 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATGATAAAAGAAAAAAA+GGG + chr3_1:62681083-62681102 None:intergenic 10.0%
!! TAAATGCTAATTATTATATT+TGG - chr3_1:62681965-62681984 Msa0367140:intron 10.0%
!! GATAATTAATGATTTATATA+AGG - chr3_1:62682938-62682957 Msa0367140:intron 10.0%
!! CTATATGATAAAAGAAAAAA+AGG + chr3_1:62681084-62681103 None:intergenic 15.0%
!! AAAACAATAAAACAACAAAA+GGG + chr3_1:62681200-62681219 None:intergenic 15.0%
!! AAAAACAATAAAACAACAAA+AGG + chr3_1:62681201-62681220 None:intergenic 15.0%
!!! TTTTTATCAATGATTTGTTA+TGG - chr3_1:62681216-62681235 Msa0367140:exon 15.0%
!!! TTTGAAAGTTTTATTCTTTT+TGG - chr3_1:62681655-62681674 Msa0367140:intron 15.0%
!! TGAAAACAGAAAAAATAATA+TGG + chr3_1:62681833-62681852 None:intergenic 15.0%
!!! TTTTTTTTTCAATTAACACA+GGG + chr3_1:62682351-62682370 None:intergenic 15.0%
!!! TTTTTTTTTTCAATTAACAC+AGG + chr3_1:62682352-62682371 None:intergenic 15.0%
!! TTGAAAAAAAAAATGATCAT+TGG - chr3_1:62682359-62682378 Msa0367140:intron 15.0%
!! AATTATAGACATGAAACTTT+AGG - chr3_1:62681279-62681298 Msa0367140:CDS 20.0%
!! CATATCTAACTCAAATAATT+TGG + chr3_1:62681308-62681327 None:intergenic 20.0%
!!! ATAATTTGTTGAGATTTGTT+TGG - chr3_1:62681596-62681615 Msa0367140:intron 20.0%
!!! ATTTTTAAAAAATCGCTATG+AGG - chr3_1:62681864-62681883 Msa0367140:intron 20.0%
!! TAGTATAAATAAGAGATTGT+AGG + chr3_1:62682150-62682169 None:intergenic 20.0%
!! AAAAAAAAATGATCATTGGT+TGG - chr3_1:62682363-62682382 Msa0367140:intron 20.0%
!! TTTGTTAATTGTTTGGAAAA+TGG - chr3_1:62682977-62682996 Msa0367140:intron 20.0%
!!! AAATCATGAATCATTTTCTT+GGG + chr3_1:62683199-62683218 None:intergenic 20.0%
!! TTACATAAAACATAAATGCA+CGG + chr3_1:62683716-62683735 None:intergenic 20.0%
!!! TTTGTTATTTATTGTCAACA+TGG - chr3_1:62683761-62683780 Msa0367140:intron 20.0%
!! ATTTGTATACCAACATTATA+AGG - chr3_1:62684156-62684175 Msa0367140:five_prime_UTR 20.0%
! ATTAGGGTTGAAATTGAAAA+GGG + chr3_1:62680933-62680952 None:intergenic 25.0%
!! TTATGGATCTGTTATTTGAA+GGG - chr3_1:62681233-62681252 Msa0367140:CDS 25.0%
! ATGTTATTGTTTATGAAGCT+AGG - chr3_1:62681325-62681344 Msa0367140:CDS 25.0%
!!! ATGATGATGTTTTGTGTTTT+AGG - chr3_1:62681401-62681420 Msa0367140:intron 25.0%
! TTGAGATAATTAAAGAGCAA+GGG + chr3_1:62682187-62682206 None:intergenic 25.0%
! TACACTTTAATCAATGAATC+AGG - chr3_1:62683004-62683023 Msa0367140:intron 25.0%
!! CAAATCATGAATCATTTTCT+TGG + chr3_1:62683200-62683219 None:intergenic 25.0%
!!! GAAGAACTGTGATTTTTTTT+TGG - chr3_1:62683246-62683265 Msa0367140:intron 25.0%
!! AAGTTGATCATATGATTGTT+AGG - chr3_1:62683385-62683404 Msa0367140:CDS 25.0%
!! ATCCTAACATTCACTATTTT+AGG - chr3_1:62683519-62683538 Msa0367140:intron 25.0%
! AACAAACATAATTCAATCTC+AGG + chr3_1:62683949-62683968 None:intergenic 25.0%
! TTTGTTTATATGTTATCTGC+TGG - chr3_1:62683963-62683982 Msa0367140:five_prime_UTR 25.0%
!!! AAGGTATTTTAAAGCGTGTT+TGG - chr3_1:62680700-62680719 Msa0367140:three_prime_UTR 30.0%
! CTAAATTACGCGTTTTTGAA+TGG + chr3_1:62680753-62680772 None:intergenic 30.0%
AAACGAAAGAAGGGATAATA+AGG + chr3_1:62680882-62680901 None:intergenic 30.0%
GAAGAAGAAAAACGAAAGAA+GGG + chr3_1:62680891-62680910 None:intergenic 30.0%
GATTAGGGTTGAAATTGAAA+AGG + chr3_1:62680934-62680953 None:intergenic 30.0%
! GTTATGGATCTGTTATTTGA+AGG - chr3_1:62681232-62681251 Msa0367140:CDS 30.0%
!! TGTTATTTGAAGGGTTTTTG+AGG - chr3_1:62681242-62681261 Msa0367140:CDS 30.0%
AAAAATAATATGGTCCCTGT+CGG + chr3_1:62681823-62681842 None:intergenic 30.0%
TTTAAAAAATCGCTATGAGG+AGG - chr3_1:62681867-62681886 Msa0367140:intron 30.0%
! AGCTTGATCGATAATTTTGA+CGG + chr3_1:62681993-62682012 None:intergenic 30.0%
ACTATTATCAAGTCCTTACT+TGG + chr3_1:62682114-62682133 None:intergenic 30.0%
TGAGATAATTAAAGAGCAAG+GGG + chr3_1:62682186-62682205 None:intergenic 30.0%
CTTGAGATAATTAAAGAGCA+AGG + chr3_1:62682188-62682207 None:intergenic 30.0%
AGATCAGTGGAAAACAAAAA+AGG + chr3_1:62682412-62682431 None:intergenic 30.0%
GTCAATATTAACAACATCCA+CGG + chr3_1:62682601-62682620 None:intergenic 30.0%
AACATAAAACTATCTTCAGG+TGG + chr3_1:62682630-62682649 None:intergenic 30.0%
CCTAACATAAAACTATCTTC+AGG + chr3_1:62682633-62682652 None:intergenic 30.0%
!!! CCTGAAGATAGTTTTATGTT+AGG - chr3_1:62682630-62682649 Msa0367140:intron 30.0%
! TTTTCTTTTTCTTGCTGATG+AGG - chr3_1:62682657-62682676 Msa0367140:intron 30.0%
GTTTGCAAACTCAATTAAAC+CGG + chr3_1:62682723-62682742 None:intergenic 30.0%
TTTGCAAACATCTTGTACTT+TGG - chr3_1:62682734-62682753 Msa0367140:intron 30.0%
TATTTGTCTCGACATTCTTA+AGG - chr3_1:62682859-62682878 Msa0367140:intron 30.0%
CTAAAATCAAACCTTGGAAA+TGG + chr3_1:62682906-62682925 None:intergenic 30.0%
CAACAACTAAAATCAAACCT+TGG + chr3_1:62682912-62682931 None:intergenic 30.0%
!! GACAAGCTTTGTTAATTGTT+TGG - chr3_1:62682970-62682989 Msa0367140:intron 30.0%
! TTTTGTTGATGTCATTCTTG+TGG - chr3_1:62683137-62683156 Msa0367140:intron 30.0%
TTTGTTGATGTCATTCTTGT+GGG - chr3_1:62683138-62683157 Msa0367140:intron 30.0%
CACCTAAAATAGTGAATGTT+AGG + chr3_1:62683524-62683543 None:intergenic 30.0%
TTGTACATATGTGCAATTTC+AGG + chr3_1:62683601-62683620 None:intergenic 30.0%
GTGAAAATTGTTAAGACATC+TGG - chr3_1:62683820-62683839 Msa0367140:intron 30.0%
GAAAATTGTAGTTACGAACA+TGG - chr3_1:62683894-62683913 Msa0367140:CDS 30.0%
TTTATATGTTATCTGCTGGT+TGG - chr3_1:62683967-62683986 Msa0367140:five_prime_UTR 30.0%
!! AGGTTGGTAAACAACAAAAA+TGG + chr3_1:62684004-62684023 None:intergenic 30.0%
TAAGCTATAGACATATGAGT+GGG + chr3_1:62684105-62684124 None:intergenic 30.0%
TTAAGCTATAGACATATGAG+TGG + chr3_1:62684106-62684125 None:intergenic 30.0%
AATCAACCAAAAACAAGACT+AGG + chr3_1:62684139-62684158 None:intergenic 30.0%
AAAATGGCTCCTTATAATGT+TGG + chr3_1:62684168-62684187 None:intergenic 30.0%
! TGTCGTAATGGAATGTGTTT+GGG + chr3_1:62680792-62680811 None:intergenic 35.0%
! TTGTCGTAATGGAATGTGTT+TGG + chr3_1:62680793-62680812 None:intergenic 35.0%
ATCTTCTCTGTTTGTCGTAA+TGG + chr3_1:62680804-62680823 None:intergenic 35.0%
GAGAGAGAATGAGAGAAAAA+GGG + chr3_1:62680860-62680879 None:intergenic 35.0%
GGAAGAAGAAAAACGAAAGA+AGG + chr3_1:62680892-62680911 None:intergenic 35.0%
GGGTTTGATTGAAATTGAAG+AGG + chr3_1:62680913-62680932 None:intergenic 35.0%
! GGTTTCAATTCATTTTCCTC+CGG - chr3_1:62681505-62681524 Msa0367140:intron 35.0%
CAGATCATACATACAAGCTA+GGG + chr3_1:62681563-62681582 None:intergenic 35.0%
ACAGATCATACATACAAGCT+AGG + chr3_1:62681564-62681583 None:intergenic 35.0%
AAAATAATATGGTCCCTGTC+GGG + chr3_1:62681822-62681841 None:intergenic 35.0%
!! GCTTGATCGATAATTTTGAC+GGG + chr3_1:62681992-62682011 None:intergenic 35.0%
ATAATTAAAGAGCAAGGGGA+TGG + chr3_1:62682182-62682201 None:intergenic 35.0%
TATTTGTGTTGCAACTTGCA+AGG - chr3_1:62682261-62682280 Msa0367140:intron 35.0%
CCAAGTACAGTATATTTGTC+CGG - chr3_1:62682701-62682720 Msa0367140:intron 35.0%
TTATTGTCTTGCAATACTGC+AGG - chr3_1:62682787-62682806 Msa0367140:intron 35.0%
! TTCCATTGCTGTTGATGTTT+GGG + chr3_1:62682838-62682857 None:intergenic 35.0%
TCGACATTCTTAAGGAACAA+TGG - chr3_1:62682867-62682886 Msa0367140:intron 35.0%
ACACACACAAACTATATCTC+AGG + chr3_1:62683356-62683375 None:intergenic 35.0%
AACAACAACATTCCAAATGC+AGG + chr3_1:62683459-62683478 None:intergenic 35.0%
! GTTGTTGTTCTTATGTGTCA+TGG - chr3_1:62683470-62683489 Msa0367140:intron 35.0%
ATAATCAATTCCCATTGCCA+TGG + chr3_1:62683794-62683813 None:intergenic 35.0%
TTCATTTATCATCGCTGCTT+GGG + chr3_1:62683877-62683896 None:intergenic 35.0%
TTTCATTTATCATCGCTGCT+TGG + chr3_1:62683878-62683897 None:intergenic 35.0%
!!! GTTGAGGTAGATTTTTAGGT+TGG + chr3_1:62684020-62684039 None:intergenic 35.0%
! AGTGGTTGAGGTAGATTTTT+AGG + chr3_1:62684024-62684043 None:intergenic 35.0%
AAGCTATAGACATATGAGTG+GGG + chr3_1:62684104-62684123 None:intergenic 35.0%
!! TAAGGAGCCATTTTATTGCA+TGG - chr3_1:62684174-62684193 Msa0367140:five_prime_UTR 35.0%
AGAATGAGAGAAAAAGGGAC+AGG + chr3_1:62680855-62680874 None:intergenic 40.0%
GGAGAGAGAATGAGAGAAAA+AGG + chr3_1:62680861-62680880 None:intergenic 40.0%
AGAGAGAGAGAGAGAGATTA+GGG + chr3_1:62680949-62680968 None:intergenic 40.0%
!! TCTCTCCTTTGATTTGAGCA+TGG - chr3_1:62680964-62680983 Msa0367140:three_prime_UTR 40.0%
! ATTTGAGCATGGCATCGAAA+CGG - chr3_1:62680975-62680994 Msa0367140:three_prime_UTR 40.0%
!!! GAAGGGTTTTTGAGGTGATT+TGG - chr3_1:62681250-62681269 Msa0367140:CDS 40.0%
!! GTTTTGTGTTTTAGGTCCTG+TGG - chr3_1:62681409-62681428 Msa0367140:intron 40.0%
TCATTGGCAAGCAACAATCA+TGG - chr3_1:62681445-62681464 Msa0367140:intron 40.0%
CATTGGCAAGCAACAATCAT+GGG - chr3_1:62681446-62681465 Msa0367140:intron 40.0%
AAAAACACACCACCAGCATA+GGG + chr3_1:62681485-62681504 None:intergenic 40.0%
TTATCCATTCAAGCCACCAA+AGG - chr3_1:62681529-62681548 Msa0367140:intron 40.0%
! AATACCTTTGGTGGCTTGAA+TGG + chr3_1:62681536-62681555 None:intergenic 40.0%
TAGGGTTTCAATACCTTTGG+TGG + chr3_1:62681545-62681564 None:intergenic 40.0%
AGCTAGGGTTTCAATACCTT+TGG + chr3_1:62681548-62681567 None:intergenic 40.0%
!!! TGTTTTGAGGGGTGAATGTT+TGG - chr3_1:62681784-62681803 Msa0367140:intron 40.0%
GCAATGAAAGCTTTGCATCT+TGG + chr3_1:62681941-62681960 None:intergenic 40.0%
! AAGCAAACTTTTCCTGAAGG+CGG + chr3_1:62682016-62682035 None:intergenic 40.0%
! GAGAAGCAAACTTTTCCTGA+AGG + chr3_1:62682019-62682038 None:intergenic 40.0%
ATCTCAAGCAAACAAGCTAG+TGG - chr3_1:62682200-62682219 Msa0367140:intron 40.0%
TCTCAAGCAAACAAGCTAGT+GGG - chr3_1:62682201-62682220 Msa0367140:intron 40.0%
AAATAACCTGAGGCTTCTTG+AGG + chr3_1:62682246-62682265 None:intergenic 40.0%
GTTGCAACACAAATAACCTG+AGG + chr3_1:62682256-62682275 None:intergenic 40.0%
CAACAGTTTGCAATACACTC+AGG + chr3_1:62682320-62682339 None:intergenic 40.0%
AACTGGGACAAAAAGATCAG+TGG + chr3_1:62682425-62682444 None:intergenic 40.0%
TCTCAAACCAATGAAATCCG+TGG - chr3_1:62682581-62682600 Msa0367140:intron 40.0%
ACAACATCCACGGATTTCAT+TGG + chr3_1:62682591-62682610 None:intergenic 40.0%
CCGGACAAATATACTGTACT+TGG + chr3_1:62682704-62682723 None:intergenic 40.0%
CAATACTGCAGGTTGCATTT+AGG - chr3_1:62682798-62682817 Msa0367140:intron 40.0%
! CTTCCATTGCTGTTGATGTT+TGG + chr3_1:62682839-62682858 None:intergenic 40.0%
TTGATGTCATTCTTGTGGGA+AGG - chr3_1:62683142-62683161 Msa0367140:intron 40.0%
CAAATGCAGGTCGTTAAACA+CGG + chr3_1:62683446-62683465 None:intergenic 40.0%
GTCAATCTGCTCATTGTTGA+CGG - chr3_1:62683549-62683568 Msa0367140:intron 40.0%
CACATATGTACAAGACTGAC+AGG - chr3_1:62683608-62683627 Msa0367140:intron 40.0%
TTTAACAGCGAAGGAGGAAT+TGG + chr3_1:62683688-62683707 None:intergenic 40.0%
! GACATCTGGTGCAAATTTTC+TGG - chr3_1:62683834-62683853 Msa0367140:intron 40.0%
AACATGGTGATTATTGCCTG+TGG - chr3_1:62683910-62683929 Msa0367140:exon 40.0%
AGGAACAATGAAACATCCAC+AGG + chr3_1:62683929-62683948 None:intergenic 40.0%
!!! CTACCTCAACCACTTTTTGT+TGG - chr3_1:62684030-62684049 Msa0367140:five_prime_UTR 40.0%
ACAGATGGACCAACAAAAAG+TGG + chr3_1:62684042-62684061 None:intergenic 40.0%
!!! CTCTGTCCTAGTCTTGTTTT+TGG - chr3_1:62684130-62684149 Msa0367140:five_prime_UTR 40.0%
ACACGGTCCATGCAATAAAA+TGG + chr3_1:62684184-62684203 None:intergenic 40.0%
GAGAGAGAGAGAGAGAGATT+AGG + chr3_1:62680950-62680969 None:intergenic 45.0%
CGATGCCATGCTCAAATCAA+AGG + chr3_1:62680972-62680991 None:intergenic 45.0%
TGGCTGAGGACATGTTTCAT+TGG - chr3_1:62681429-62681448 Msa0367140:intron 45.0%
AAAACACACCACCAGCATAG+GGG + chr3_1:62681484-62681503 None:intergenic 45.0%
CAAAAACACACCACCAGCAT+AGG + chr3_1:62681486-62681505 None:intergenic 45.0%
!! CTATGCTGGTGGTGTGTTTT+TGG - chr3_1:62681484-62681503 Msa0367140:intron 45.0%
GGTGGCTTGAATGGATAATC+CGG + chr3_1:62681527-62681546 None:intergenic 45.0%
!! CTCGCAGAGGATCGATTTTA+TGG + chr3_1:62682085-62682104 None:intergenic 45.0%
CATAAAATCGATCCTCTGCG+AGG - chr3_1:62682083-62682102 Msa0367140:intron 45.0%
CTCAAGCAAACAAGCTAGTG+GGG - chr3_1:62682202-62682221 Msa0367140:intron 45.0%
TCTTGAGGCAGGTTTATGCT+AGG + chr3_1:62682231-62682250 None:intergenic 45.0%
TTGCAATACACTCAGGCTCT+CGG + chr3_1:62682313-62682332 None:intergenic 45.0%
AGACGACAATTGTGAACGTG+TGG + chr3_1:62682474-62682493 None:intergenic 45.0%
! GCAGGTTGCATTTAGGACTA+AGG - chr3_1:62682805-62682824 Msa0367140:intron 45.0%
! CATTGCTGTTGATGTTTGGG+TGG + chr3_1:62682835-62682854 None:intergenic 45.0%
CACCCAAACATCAACAGCAA+TGG - chr3_1:62682833-62682852 Msa0367140:intron 45.0%
CGTGTTTAACGACCTGCATT+TGG - chr3_1:62683444-62683463 Msa0367140:CDS 45.0%
TGTGCAATTTCAGGCACAAG+CGG + chr3_1:62683592-62683611 None:intergenic 45.0%
! TGGACACAGAAGTATGCCAT+GGG - chr3_1:62683658-62683677 Msa0367140:intron 45.0%
GTTGCATTTAACAGCGAAGG+AGG + chr3_1:62683694-62683713 None:intergenic 45.0%
ACGGTTGCATTTAACAGCGA+AGG + chr3_1:62683697-62683716 None:intergenic 45.0%
GTCAACATGGAACTCAACCA+TGG - chr3_1:62683774-62683793 Msa0367140:intron 45.0%
ATGGAACTCAACCATGGCAA+TGG - chr3_1:62683780-62683799 Msa0367140:intron 45.0%
TGGAACTCAACCATGGCAAT+GGG - chr3_1:62683781-62683800 Msa0367140:intron 45.0%
GGACCAACAAAAAGTGGTTG+AGG + chr3_1:62684036-62684055 None:intergenic 45.0%
TTGTTGGTCCATCTGTTGAC+CGG - chr3_1:62684046-62684065 Msa0367140:five_prime_UTR 45.0%
AAGACTGTACCAGTTGAAGC+TGG + chr3_1:62684074-62684093 None:intergenic 45.0%
!!! ATGATTTATTTTTTAAATTA+TGG - chr3_1:62681171-62681190 Msa0367140:three_prime_UTR 5.0%
GAGAGAAAAAGGGACAGGCA+AGG + chr3_1:62680850-62680869 None:intergenic 50.0%
GCAAATCCTTGAGCTCCTTG+AGG + chr3_1:62681003-62681022 None:intergenic 50.0%
GGAGCTCAAGGATTTGCAGA+AGG - chr3_1:62681006-62681025 Msa0367140:three_prime_UTR 50.0%
TCACCTGCACTGCATGATGT+TGG + chr3_1:62681037-62681056 None:intergenic 50.0%
!! TGTTTTAGGTCCTGTGGCTG+AGG - chr3_1:62681415-62681434 Msa0367140:intron 50.0%
TGAAACATGTCCTCAGCCAC+AGG + chr3_1:62681428-62681447 None:intergenic 50.0%
GGCTTGAATGGATAATCCGG+AGG + chr3_1:62681524-62681543 None:intergenic 50.0%
AAATCTATCTAGCCGCGCAG+TGG - chr3_1:62681754-62681773 Msa0367140:intron 50.0%
TTGAGGGGTGAATGTTTGGC+AGG - chr3_1:62681788-62681807 Msa0367140:intron 50.0%
CTATGAGGAGGTTCGAACCA+TGG - chr3_1:62681879-62681898 Msa0367140:intron 50.0%
GTCGTGGTACTAAAGCGCAT+CGG + chr3_1:62681917-62681936 None:intergenic 50.0%
ACCTTACCTCAATGCCGAAG+TGG - chr3_1:62682287-62682306 Msa0367140:intron 50.0%
GCATGCATGCAAGCGAAACT+GGG + chr3_1:62682441-62682460 None:intergenic 50.0%
TGCATGCATGCAAGCGAAAC+TGG + chr3_1:62682442-62682461 None:intergenic 50.0%
CCTTGGAAATGGTCAGTGCA+GGG + chr3_1:62682895-62682914 None:intergenic 50.0%
ACCTTGGAAATGGTCAGTGC+AGG + chr3_1:62682896-62682915 None:intergenic 50.0%
ACAAGCGGATCATCGGGATT+GGG + chr3_1:62683577-62683596 None:intergenic 50.0%
TTCAGGCACAAGCGGATCAT+CGG + chr3_1:62683584-62683603 None:intergenic 50.0%
! CTGGACACAGAAGTATGCCA+TGG - chr3_1:62683657-62683676 Msa0367140:intron 50.0%
AGGAGGAATTGGTCATCCCA+TGG + chr3_1:62683677-62683696 None:intergenic 50.0%
GTACCAGTTGAAGCTGGTAC+CGG + chr3_1:62684068-62684087 None:intergenic 50.0%
! GGCATCGAAACGGATCCTCA+AGG - chr3_1:62680985-62681004 Msa0367140:three_prime_UTR 55.0%
ACGGATCCTCAAGGAGCTCA+AGG - chr3_1:62680994-62681013 Msa0367140:three_prime_UTR 55.0%
CCTGCACTGCATGATGTTGG+TGG + chr3_1:62681034-62681053 None:intergenic 55.0%
CCACCAACATCATGCAGTGC+AGG - chr3_1:62681031-62681050 Msa0367140:three_prime_UTR 55.0%
!! AGTGGCGGGGTCTGTTTTGA+GGG - chr3_1:62681772-62681791 Msa0367140:intron 55.0%
! ATCGGTTTACCTCGCGTCCA+TGG + chr3_1:62681899-62681918 None:intergenic 55.0%
AGCTTTGCATCTTGGCGTCG+TGG + chr3_1:62681933-62681952 None:intergenic 55.0%
ATCGATCAAGCTCCGCCTTC+AGG - chr3_1:62682001-62682020 Msa0367140:CDS 55.0%
TACTTGGTACGACCTCGCAG+AGG + chr3_1:62682098-62682117 None:intergenic 55.0%
CTGCGAGGTCGTACCAAGTA+AGG - chr3_1:62682098-62682117 Msa0367140:intron 55.0%
GAGCAAGGGGATGGACGAAT+GGG + chr3_1:62682173-62682192 None:intergenic 55.0%
AGAGCAAGGGGATGGACGAA+TGG + chr3_1:62682174-62682193 None:intergenic 55.0%
AACCTGCCTCAAGAAGCCTC+AGG - chr3_1:62682237-62682256 Msa0367140:intron 55.0%
AACCTGAGGCTTCTTGAGGC+AGG + chr3_1:62682242-62682261 None:intergenic 55.0%
! GCCACTTCGGCATTGAGGTA+AGG + chr3_1:62682291-62682310 None:intergenic 55.0%
! CCCTGCACTGACCATTTCCA+AGG - chr3_1:62682892-62682911 Msa0367140:intron 55.0%
CACAAGCGGATCATCGGGAT+TGG + chr3_1:62683578-62683597 None:intergenic 55.0%
TCAGGCACAAGCGGATCATC+GGG + chr3_1:62683583-62683602 None:intergenic 55.0%
!! AGCTGGTACCGGTCAACAGA+TGG + chr3_1:62684057-62684076 None:intergenic 55.0%
TGACCGGTACCAGCTTCAAC+TGG - chr3_1:62684062-62684081 Msa0367140:five_prime_UTR 55.0%
CCAGCATAGGGGCTATCAGC+AGG + chr3_1:62681473-62681492 None:intergenic 60.0%
CCTGCTGATAGCCCCTATGC+TGG - chr3_1:62681470-62681489 Msa0367140:intron 60.0%
GCTGATAGCCCCTATGCTGG+TGG - chr3_1:62681473-62681492 Msa0367140:intron 60.0%
TCTATCTAGCCGCGCAGTGG+CGG - chr3_1:62681757-62681776 Msa0367140:intron 60.0%
!! CAGTGGCGGGGTCTGTTTTG+AGG - chr3_1:62681771-62681790 Msa0367140:intron 60.0%
!! GTGGCGGGGTCTGTTTTGAG+GGG - chr3_1:62681773-62681792 Msa0367140:intron 60.0%
AGGTTCGAACCATGGACGCG+AGG - chr3_1:62681887-62681906 Msa0367140:intron 60.0%
TCTCGGCCACTTCGGCATTG+AGG + chr3_1:62682296-62682315 None:intergenic 60.0%
ACTCAGGCTCTCGGCCACTT+CGG + chr3_1:62682304-62682323 None:intergenic 60.0%
GCGTGCGGTGGCTTCATACT+TGG + chr3_1:62683635-62683654 None:intergenic 60.0%
CTTCTGTGTCCAGCTGCGTG+CGG + chr3_1:62683650-62683669 None:intergenic 60.0%
CTATCTAGCCGCGCAGTGGC+GGG - chr3_1:62681758-62681777 Msa0367140:intron 65.0%
TATCTAGCCGCGCAGTGGCG+GGG - chr3_1:62681759-62681778 Msa0367140:intron 65.0%
AAACAGACCCCGCCACTGCG+CGG + chr3_1:62681769-62681788 None:intergenic 65.0%
GCAGGCAGTCGATCCCGACA+GGG - chr3_1:62681806-62681825 Msa0367140:intron 65.0%
ATGAAGCCACCGCACGCAGC+TGG - chr3_1:62683638-62683657 Msa0367140:intron 65.0%
GGCAGGCAGTCGATCCCGAC+AGG - chr3_1:62681805-62681824 Msa0367140:intron 70.0%
CTGTGTCCAGCTGCGTGCGG+TGG + chr3_1:62683647-62683666 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 62680696 62684206 62680696 ID=Msa0367140;Name=Msa0367140
chr3_1 mRNA 62680696 62684206 62680696 ID=Msa0367140-mRNA-1;Parent=Msa0367140;Name=Msa0367140-mRNA-1;_AED=0.04;_eAED=0.04;_QI=287|1|1|1|1|1|4|522|148
chr3_1 exon 62680696 62681361 62680696 ID=Msa0367140-mRNA-1:exon:12199;Parent=Msa0367140-mRNA-1
chr3_1 exon 62681989 62682093 62681989 ID=Msa0367140-mRNA-1:exon:12198;Parent=Msa0367140-mRNA-1
chr3_1 exon 62683352 62683479 62683352 ID=Msa0367140-mRNA-1:exon:12197;Parent=Msa0367140-mRNA-1
chr3_1 exon 62683850 62684206 62683850 ID=Msa0367140-mRNA-1:exon:12196;Parent=Msa0367140-mRNA-1
chr3_1 five_prime_UTR 62683920 62684206 62683920 ID=Msa0367140-mRNA-1:five_prime_utr;Parent=Msa0367140-mRNA-1
chr3_1 CDS 62683850 62683919 62683850 ID=Msa0367140-mRNA-1:cds;Parent=Msa0367140-mRNA-1
chr3_1 CDS 62683352 62683479 62683352 ID=Msa0367140-mRNA-1:cds;Parent=Msa0367140-mRNA-1
chr3_1 CDS 62681989 62682093 62681989 ID=Msa0367140-mRNA-1:cds;Parent=Msa0367140-mRNA-1
chr3_1 CDS 62681218 62681361 62681218 ID=Msa0367140-mRNA-1:cds;Parent=Msa0367140-mRNA-1
chr3_1 three_prime_UTR 62680696 62681217 62680696 ID=Msa0367140-mRNA-1:three_prime_utr;Parent=Msa0367140-mRNA-1
Gene Sequence

>Msa0367140

ATGGCATCGAAACGGATCCTCAAGGAGCTCAAGGATTTGCAGAAGGATCCACCAACATCATGCAGTGCAGGTCCTGTGGCTGAGGACATGTTTCATTGGCAAGCAACAATCATGGGACCTGCTGATAGCCCCTATGCTGGTGGTGTGTTTTTGGTTTCAATTCATTTTCCTCCGGATTATCCATTCAAGCCACCAAAGGTTGCATTTAGGACTAAGGTATTCCACCCAAACATCAACAGCAATGGAAGTATTTGTCTCGACATTCTTAAGGAACAATGGAGCCCTGCACTGACCATTTCCAAGGTGCTTTTGTCAATCTGCTCATTGTTGACGGATCCCAATCCCGATGATCCGCTTGTGCCTGAAATTGCACATATGTACAAGACTGACAGGACCAAGTATGAAGCCACCGCACGCAGCTGGACACAGAAGTATGCCATGGGATGA
Protein sequence

>Msa0367140

MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRTKYEATARSWTQKYAMG*