Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1299120 | A0A072UQD6 | 80.749 | 187 | 31 | 2 | 10 | 193 | 2 | 186 | 5.13e-86 | 261 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0748970 | Msa1299120 | 0.828375 | 9.310165e-55 | -8.615850e-47 |
| Msa0826320 | Msa1299120 | 0.816084 | 6.635468e-52 | -8.615850e-47 |
| Msa1259380 | Msa1299120 | 0.947120 | 1.245476e-105 | -8.615850e-47 |
| Msa1299120 | Msa1384240 | 0.808685 | 2.743330e-50 | -8.615850e-47 |
| Msa1299120 | Msa1458750 | 0.823188 | 1.584396e-53 | -8.615850e-47 |
| Msa0434000 | Msa1299120 | 0.815002 | 1.155450e-51 | -8.615850e-47 |
| Msa0999050 | Msa1299120 | -0.815028 | 1.140473e-51 | -8.615850e-47 |
| Msa0342750 | Msa1299120 | 0.833428 | 5.363213e-56 | -8.615850e-47 |
| Msa1210220 | Msa1299120 | 0.805000 | 1.648425e-49 | -8.615850e-47 |
| Msa1210940 | Msa1299120 | 0.811880 | 5.610900e-51 | -8.615850e-47 |
| Msa0519000 | Msa1299120 | 0.800851 | 1.187215e-48 | -8.615850e-47 |
| Msa0537720 | Msa1299120 | 0.815568 | 8.647778e-52 | -8.615850e-47 |
| Msa0900910 | Msa1299120 | 0.815990 | 6.962506e-52 | -8.615850e-47 |
| Msa0901070 | Msa1299120 | 0.826750 | 2.286086e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1299120 | MtrunA17_Chr4g0055101 | 80.749 | 187 | 31 | 2 | 10 | 193 | 2 | 186 | 9.87e-90 | 261 |
| Msa1299120 | MtrunA17_Chr4g0059481 | 56.379 | 243 | 42 | 7 | 1 | 184 | 1 | 238 | 9.96e-67 | 204 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 43 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGAGCGGGAGGAAGAATT+TGG | 0.312405 | 8_3:-60141214 | Msa1299120:intron |
| AAGCCATAATCTGCTGATTT+CGG | 0.337263 | 8_3:+60141661 | None:intergenic |
| ATCTGTTTGAGTTTCTGTTT+CGG | 0.377672 | 8_3:+60141917 | None:intergenic |
| GAACCGAAATCAGCAGATTA+TGG | 0.378368 | 8_3:-60141664 | Msa1299120:CDS |
| TAGAAATAGTGGAAATCATC+AGG | 0.380708 | 8_3:+60141356 | None:intergenic |
| TTTCATGAGCTCTGATAAAC+TGG | 0.396861 | 8_3:-60141692 | Msa1299120:CDS |
| TTGATTCATGCAGGAGGAAA+AGG | 0.416587 | 8_3:-60140605 | Msa1299120:intron |
| AGTTTCTGTTTCGGCTCCCT+CGG | 0.430273 | 8_3:+60141926 | None:intergenic |
| TCATGGTCTCCTCGATTGCT+TGG | 0.435909 | 8_3:+60140758 | None:intergenic |
| ACGACATGGACATTTCAAAC+TGG | 0.436567 | 8_3:-60141089 | Msa1299120:CDS |
| CTCGGACTCGAATTCGCCAT+TGG | 0.451917 | 8_3:+60141944 | None:intergenic |
| GATGATTTCCACTATTTCTA+CGG | 0.471616 | 8_3:-60141353 | Msa1299120:CDS |
| ATCTGAGGACATTTCAACCT+TGG | 0.472960 | 8_3:-60140576 | Msa1299120:CDS |
| TAATACTTCCGTAGAAATAG+TGG | 0.477563 | 8_3:+60141345 | None:intergenic |
| GGGGATACGTCGTTTGATCA+TGG | 0.484883 | 8_3:+60140741 | None:intergenic |
| TGATCAAACGACGTATCCCC+AGG | 0.493648 | 8_3:-60140738 | Msa1299120:CDS |
| GCAAATGATGATTCTGTTTG+TGG | 0.499262 | 8_3:-60140509 | Msa1299120:CDS |
| TGAGGACATTTCAACCTTGG+AGG | 0.501246 | 8_3:-60140573 | Msa1299120:CDS |
| TGGTCTCCTCGATTGCTTGG+AGG | 0.502855 | 8_3:+60140761 | None:intergenic |
| CCTTCAGAATCATCAAACTA+AGG | 0.527809 | 8_3:+60140475 | None:intergenic |
| AGAGGACAGCTATGATGAGC+GGG | 0.527843 | 8_3:-60141227 | Msa1299120:CDS |
| GCTCTTCTGATGTGCAGAAG+TGG | 0.537271 | 8_3:-60140544 | Msa1299120:CDS |
| TTGTATTTATCGGCTTTGGT+TGG | 0.554582 | 8_3:+60140806 | None:intergenic |
| ATAAATACAAAACTATCAGA+TGG | 0.567313 | 8_3:-60140793 | Msa1299120:CDS |
| GAGCTCTGATAAACTGGCGG+AGG | 0.595057 | 8_3:-60141686 | Msa1299120:CDS |
| TGTAGCTAAAACAAAAGAAG+AGG | 0.595337 | 8_3:-60141245 | Msa1299120:intron |
| ATTTCAAACTGGAAAATCGA+TGG | 0.595540 | 8_3:-60141078 | Msa1299120:intron |
| TGACGCAGAAGAAGAATCTG+AGG | 0.596338 | 8_3:-60141746 | Msa1299120:intron |
| AGAAGAGCTCAGCTCCTCCA+AGG | 0.597915 | 8_3:+60140559 | None:intergenic |
| AGAAATAGTGGAAATCATCA+GGG | 0.608858 | 8_3:+60141357 | None:intergenic |
| CAATGGCGAATTCGAGTCCG+AGG | 0.609290 | 8_3:-60141943 | Msa1299120:CDS |
| AGGAAAAGGCAAAGAATCTG+AGG | 0.616583 | 8_3:-60140591 | Msa1299120:CDS |
| TGAAGAAGAAATTGACGACA+TGG | 0.621062 | 8_3:-60141103 | Msa1299120:CDS |
| GATCAAACGACGTATCCCCA+GGG | 0.643779 | 8_3:-60140737 | Msa1299120:CDS |
| AAGAGGACAGCTATGATGAG+CGG | 0.651595 | 8_3:-60141228 | Msa1299120:CDS |
| TTTCATCCTCCAAGCAATCG+AGG | 0.655223 | 8_3:-60140767 | Msa1299120:CDS |
| AATGATGATTCTGTTTGTGG+TGG | 0.665654 | 8_3:-60140506 | Msa1299120:CDS |
| CATGAGCTCTGATAAACTGG+CGG | 0.669381 | 8_3:-60141689 | Msa1299120:CDS |
| AAACAGATTCTCAGTCGCAG+TGG | 0.684862 | 8_3:-60141902 | Msa1299120:intron |
| GAAATAGTGGAAATCATCAG+GGG | 0.685394 | 8_3:+60141358 | None:intergenic |
| AATGGCGAATTCGAGTCCGA+GGG | 0.686699 | 8_3:-60141942 | Msa1299120:CDS |
| ATCAAACGACGTATCCCCAG+GGG | 0.723149 | 8_3:-60140736 | Msa1299120:intron |
| AAAGAAGAATAATACCCCTG+GGG | 0.748744 | 8_3:+60140722 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGAATTTTATTTGAAA+CGG | - | chr8_3:60141447-60141466 | Msa1299120:intron | 10.0% |
| !!! | AATTTGAATTTTATTTGAAA+CGG | - | chr8_3:60141447-60141466 | Msa1299120:intron | 10.0% |
| !!! | ATTTGGTATTATTGTTTTTT+CGG | - | chr8_3:60141231-60141250 | Msa1299120:CDS | 15.0% |
| !!! | ATTTGGTATTATTGTTTTTT+CGG | - | chr8_3:60141231-60141250 | Msa1299120:CDS | 15.0% |
| !! | TGTTAATGTTTATAATGTGT+TGG | - | chr8_3:60141133-60141152 | Msa1299120:intron | 20.0% |
| !! | GTTAATGTTTATAATGTGTT+GGG | - | chr8_3:60141134-60141153 | Msa1299120:intron | 20.0% |
| !!! | TTATTGTTTTTTCGGATTTA+AGG | - | chr8_3:60141239-60141258 | Msa1299120:CDS | 20.0% |
| !!! | TCTGATAGTTTTGTATTTAT+CGG | + | chr8_3:60141635-60141654 | None:intergenic | 20.0% |
| !! | ATAAATACAAAACTATCAGA+TGG | - | chr8_3:60141635-60141654 | Msa1299120:intron | 20.0% |
| !! | TGTTAATGTTTATAATGTGT+TGG | - | chr8_3:60141133-60141152 | Msa1299120:intron | 20.0% |
| !! | GTTAATGTTTATAATGTGTT+GGG | - | chr8_3:60141134-60141153 | Msa1299120:intron | 20.0% |
| !!! | TTATTGTTTTTTCGGATTTA+AGG | - | chr8_3:60141239-60141258 | Msa1299120:CDS | 20.0% |
| !!! | TCTGATAGTTTTGTATTTAT+CGG | + | chr8_3:60141635-60141654 | None:intergenic | 20.0% |
| !! | ATAAATACAAAACTATCAGA+TGG | - | chr8_3:60141635-60141654 | Msa1299120:intron | 20.0% |
| ! | AATAATCATTAATCAGCCAA+AGG | + | chr8_3:60140663-60140682 | None:intergenic | 25.0% |
| ! | ATTATTAGAAGATGAATTCG+AGG | - | chr8_3:60140893-60140912 | Msa1299120:intron | 25.0% |
| !!! | ATTTTTGAATGTGTTGTTGT+TGG | - | chr8_3:60140963-60140982 | Msa1299120:intron | 25.0% |
| !! | TTGATTGATGATACAGTAAA+AGG | - | chr8_3:60141000-60141019 | Msa1299120:intron | 25.0% |
| ! | AATAATTATTGATGCAGATG+AGG | - | chr8_3:60141598-60141617 | Msa1299120:intron | 25.0% |
| ! | AATAATCATTAATCAGCCAA+AGG | + | chr8_3:60140663-60140682 | None:intergenic | 25.0% |
| ! | ATTATTAGAAGATGAATTCG+AGG | - | chr8_3:60140893-60140912 | Msa1299120:intron | 25.0% |
| !!! | ATTTTTGAATGTGTTGTTGT+TGG | - | chr8_3:60140963-60140982 | Msa1299120:intron | 25.0% |
| !! | TTGATTGATGATACAGTAAA+AGG | - | chr8_3:60141000-60141019 | Msa1299120:intron | 25.0% |
| ! | AATAATTATTGATGCAGATG+AGG | - | chr8_3:60141598-60141617 | Msa1299120:intron | 25.0% |
| ! | ATCTGTTTGAGTTTCTGTTT+CGG | + | chr8_3:60140514-60140533 | None:intergenic | 30.0% |
| ! | AGAAATAGTGGAAATCATCA+GGG | + | chr8_3:60141074-60141093 | None:intergenic | 30.0% |
| ! | TAGAAATAGTGGAAATCATC+AGG | + | chr8_3:60141075-60141094 | None:intergenic | 30.0% |
| !! | GATGATTTCCACTATTTCTA+CGG | - | chr8_3:60141075-60141094 | Msa1299120:intron | 30.0% |
| TAATACTTCCGTAGAAATAG+TGG | + | chr8_3:60141086-60141105 | None:intergenic | 30.0% | |
| TGTAGCTAAAACAAAAGAAG+AGG | - | chr8_3:60141183-60141202 | Msa1299120:intron | 30.0% | |
| ! | TCATTTGTTTAGAATGTGTC+TGG | - | chr8_3:60141270-60141289 | Msa1299120:intron | 30.0% |
| ATTTCAAACTGGAAAATCGA+TGG | - | chr8_3:60141350-60141369 | Msa1299120:intron | 30.0% | |
| TCAAATTAAAGACATGCACA+CGG | + | chr8_3:60141434-60141453 | None:intergenic | 30.0% | |
| ! | GAAACTCAAAGAGAGATTTT+TGG | - | chr8_3:60141469-60141488 | Msa1299120:intron | 30.0% |
| !!! | AGTTTTGTATTTATCGGCTT+TGG | + | chr8_3:60141629-60141648 | None:intergenic | 30.0% |
| ! | ATCTGTTTGAGTTTCTGTTT+CGG | + | chr8_3:60140514-60140533 | None:intergenic | 30.0% |
| ! | AGAAATAGTGGAAATCATCA+GGG | + | chr8_3:60141074-60141093 | None:intergenic | 30.0% |
| ! | TAGAAATAGTGGAAATCATC+AGG | + | chr8_3:60141075-60141094 | None:intergenic | 30.0% |
| !! | GATGATTTCCACTATTTCTA+CGG | - | chr8_3:60141075-60141094 | Msa1299120:intron | 30.0% |
| TAATACTTCCGTAGAAATAG+TGG | + | chr8_3:60141086-60141105 | None:intergenic | 30.0% | |
| TGTAGCTAAAACAAAAGAAG+AGG | - | chr8_3:60141183-60141202 | Msa1299120:intron | 30.0% | |
| ! | TCATTTGTTTAGAATGTGTC+TGG | - | chr8_3:60141270-60141289 | Msa1299120:intron | 30.0% |
| ATTTCAAACTGGAAAATCGA+TGG | - | chr8_3:60141350-60141369 | Msa1299120:intron | 30.0% | |
| TCAAATTAAAGACATGCACA+CGG | + | chr8_3:60141434-60141453 | None:intergenic | 30.0% | |
| ! | GAAACTCAAAGAGAGATTTT+TGG | - | chr8_3:60141469-60141488 | Msa1299120:intron | 30.0% |
| !!! | AGTTTTGTATTTATCGGCTT+TGG | + | chr8_3:60141629-60141648 | None:intergenic | 30.0% |
| GTGCGTGTTTATAATTCCTT+TGG | - | chr8_3:60140644-60140663 | Msa1299120:intron | 35.0% | |
| ! | TTTCATGAGCTCTGATAAAC+TGG | - | chr8_3:60140736-60140755 | Msa1299120:intron | 35.0% |
| !! | AAGCCATAATCTGCTGATTT+CGG | + | chr8_3:60140770-60140789 | None:intergenic | 35.0% |
| AGTATTACTACTCTTCTTGC+AGG | - | chr8_3:60140800-60140819 | Msa1299120:CDS | 35.0% | |
| ! | TCACTAGTTTAGAATGCGTT+GGG | - | chr8_3:60140847-60140866 | Msa1299120:intron | 35.0% |
| ! | ATCAGGGGTCATGTATTTTA+TGG | + | chr8_3:60141058-60141077 | None:intergenic | 35.0% |
| ! | GAAATAGTGGAAATCATCAG+GGG | + | chr8_3:60141073-60141092 | None:intergenic | 35.0% |
| TGAAGAAGAAATTGACGACA+TGG | - | chr8_3:60141325-60141344 | Msa1299120:intron | 35.0% | |
| !! | TTGTATTTATCGGCTTTGGT+TGG | + | chr8_3:60141625-60141644 | None:intergenic | 35.0% |
| AAAGAAGAATAATACCCCTG+GGG | + | chr8_3:60141709-60141728 | None:intergenic | 35.0% | |
| GAAAGAAGAATAATACCCCT+GGG | + | chr8_3:60141710-60141729 | None:intergenic | 35.0% | |
| AGAAAGAAGAATAATACCCC+TGG | + | chr8_3:60141711-60141730 | None:intergenic | 35.0% | |
| !! | GCTTGATTATTGATTCATGC+AGG | - | chr8_3:60141814-60141833 | Msa1299120:intron | 35.0% |
| !! | TGATTATTGATTCATGCAGG+AGG | - | chr8_3:60141817-60141836 | Msa1299120:intron | 35.0% |
| GCAAATGATGATTCTGTTTG+TGG | - | chr8_3:60141919-60141938 | Msa1299120:CDS | 35.0% | |
| AATGATGATTCTGTTTGTGG+TGG | - | chr8_3:60141922-60141941 | Msa1299120:CDS | 35.0% | |
| GTGCGTGTTTATAATTCCTT+TGG | - | chr8_3:60140644-60140663 | Msa1299120:intron | 35.0% | |
| ! | TTTCATGAGCTCTGATAAAC+TGG | - | chr8_3:60140736-60140755 | Msa1299120:intron | 35.0% |
| !! | AAGCCATAATCTGCTGATTT+CGG | + | chr8_3:60140770-60140789 | None:intergenic | 35.0% |
| AGTATTACTACTCTTCTTGC+AGG | - | chr8_3:60140800-60140819 | Msa1299120:CDS | 35.0% | |
| ! | TCACTAGTTTAGAATGCGTT+GGG | - | chr8_3:60140847-60140866 | Msa1299120:intron | 35.0% |
| ! | ATCAGGGGTCATGTATTTTA+TGG | + | chr8_3:60141058-60141077 | None:intergenic | 35.0% |
| ! | GAAATAGTGGAAATCATCAG+GGG | + | chr8_3:60141073-60141092 | None:intergenic | 35.0% |
| TGAAGAAGAAATTGACGACA+TGG | - | chr8_3:60141325-60141344 | Msa1299120:intron | 35.0% | |
| !! | TTGTATTTATCGGCTTTGGT+TGG | + | chr8_3:60141625-60141644 | None:intergenic | 35.0% |
| AAAGAAGAATAATACCCCTG+GGG | + | chr8_3:60141709-60141728 | None:intergenic | 35.0% | |
| GAAAGAAGAATAATACCCCT+GGG | + | chr8_3:60141710-60141729 | None:intergenic | 35.0% | |
| AGAAAGAAGAATAATACCCC+TGG | + | chr8_3:60141711-60141730 | None:intergenic | 35.0% | |
| !! | GCTTGATTATTGATTCATGC+AGG | - | chr8_3:60141814-60141833 | Msa1299120:intron | 35.0% |
| !! | TGATTATTGATTCATGCAGG+AGG | - | chr8_3:60141817-60141836 | Msa1299120:intron | 35.0% |
| GCAAATGATGATTCTGTTTG+TGG | - | chr8_3:60141919-60141938 | Msa1299120:CDS | 35.0% | |
| AATGATGATTCTGTTTGTGG+TGG | - | chr8_3:60141922-60141941 | Msa1299120:CDS | 35.0% | |
| GAACCGAAATCAGCAGATTA+TGG | - | chr8_3:60140764-60140783 | Msa1299120:CDS | 40.0% | |
| ! | GTCACTAGTTTAGAATGCGT+TGG | - | chr8_3:60140846-60140865 | Msa1299120:intron | 40.0% |
| ACGACATGGACATTTCAAAC+TGG | - | chr8_3:60141339-60141358 | Msa1299120:intron | 40.0% | |
| TTGATTCATGCAGGAGGAAA+AGG | - | chr8_3:60141823-60141842 | Msa1299120:intron | 40.0% | |
| AGGAAAAGGCAAAGAATCTG+AGG | - | chr8_3:60141837-60141856 | Msa1299120:intron | 40.0% | |
| ATCTGAGGACATTTCAACCT+TGG | - | chr8_3:60141852-60141871 | Msa1299120:intron | 40.0% | |
| GAACCGAAATCAGCAGATTA+TGG | - | chr8_3:60140764-60140783 | Msa1299120:CDS | 40.0% | |
| ! | GTCACTAGTTTAGAATGCGT+TGG | - | chr8_3:60140846-60140865 | Msa1299120:intron | 40.0% |
| ACGACATGGACATTTCAAAC+TGG | - | chr8_3:60141339-60141358 | Msa1299120:intron | 40.0% | |
| TTGATTCATGCAGGAGGAAA+AGG | - | chr8_3:60141823-60141842 | Msa1299120:intron | 40.0% | |
| AGGAAAAGGCAAAGAATCTG+AGG | - | chr8_3:60141837-60141856 | Msa1299120:intron | 40.0% | |
| ATCTGAGGACATTTCAACCT+TGG | - | chr8_3:60141852-60141871 | Msa1299120:intron | 40.0% | |
| AAACAGATTCTCAGTCGCAG+TGG | - | chr8_3:60140526-60140545 | Msa1299120:CDS | 45.0% | |
| TGACGCAGAAGAAGAATCTG+AGG | - | chr8_3:60140682-60140701 | Msa1299120:intron | 45.0% | |
| ! | CATGAGCTCTGATAAACTGG+CGG | - | chr8_3:60140739-60140758 | Msa1299120:CDS | 45.0% |
| AAGAGGACAGCTATGATGAG+CGG | - | chr8_3:60141200-60141219 | Msa1299120:intron | 45.0% | |
| TTTCATCCTCCAAGCAATCG+AGG | - | chr8_3:60141661-60141680 | Msa1299120:CDS | 45.0% | |
| TGAGGACATTTCAACCTTGG+AGG | - | chr8_3:60141855-60141874 | Msa1299120:intron | 45.0% | |
| AAACAGATTCTCAGTCGCAG+TGG | - | chr8_3:60140526-60140545 | Msa1299120:CDS | 45.0% | |
| TGACGCAGAAGAAGAATCTG+AGG | - | chr8_3:60140682-60140701 | Msa1299120:intron | 45.0% | |
| ! | CATGAGCTCTGATAAACTGG+CGG | - | chr8_3:60140739-60140758 | Msa1299120:CDS | 45.0% |
| AAGAGGACAGCTATGATGAG+CGG | - | chr8_3:60141200-60141219 | Msa1299120:intron | 45.0% | |
| TTTCATCCTCCAAGCAATCG+AGG | - | chr8_3:60141661-60141680 | Msa1299120:CDS | 45.0% | |
| TGAGGACATTTCAACCTTGG+AGG | - | chr8_3:60141855-60141874 | Msa1299120:intron | 45.0% | |
| !! | ATTATTATTATTATTATTGA+TGG | - | chr8_3:60141159-60141178 | Msa1299120:intron | 5.0% |
| !! | ATTATTATTATTATTATTGA+TGG | - | chr8_3:60141159-60141178 | Msa1299120:intron | 5.0% |
| AGTTTCTGTTTCGGCTCCCT+CGG | + | chr8_3:60140505-60140524 | None:intergenic | 50.0% | |
| AGAGGACAGCTATGATGAGC+GGG | - | chr8_3:60141201-60141220 | Msa1299120:intron | 50.0% | |
| GATGAGCGGGAGGAAGAATT+TGG | - | chr8_3:60141214-60141233 | Msa1299120:intron | 50.0% | |
| TCATGGTCTCCTCGATTGCT+TGG | + | chr8_3:60141673-60141692 | None:intergenic | 50.0% | |
| GGGGATACGTCGTTTGATCA+TGG | + | chr8_3:60141690-60141709 | None:intergenic | 50.0% | |
| TGATCAAACGACGTATCCCC+AGG | - | chr8_3:60141690-60141709 | Msa1299120:CDS | 50.0% | |
| GATCAAACGACGTATCCCCA+GGG | - | chr8_3:60141691-60141710 | Msa1299120:CDS | 50.0% | |
| ATCAAACGACGTATCCCCAG+GGG | - | chr8_3:60141692-60141711 | Msa1299120:CDS | 50.0% | |
| GCTCTTCTGATGTGCAGAAG+TGG | - | chr8_3:60141884-60141903 | Msa1299120:intron | 50.0% | |
| AGTTTCTGTTTCGGCTCCCT+CGG | + | chr8_3:60140505-60140524 | None:intergenic | 50.0% | |
| AGAGGACAGCTATGATGAGC+GGG | - | chr8_3:60141201-60141220 | Msa1299120:intron | 50.0% | |
| GATGAGCGGGAGGAAGAATT+TGG | - | chr8_3:60141214-60141233 | Msa1299120:intron | 50.0% | |
| TCATGGTCTCCTCGATTGCT+TGG | + | chr8_3:60141673-60141692 | None:intergenic | 50.0% | |
| GGGGATACGTCGTTTGATCA+TGG | + | chr8_3:60141690-60141709 | None:intergenic | 50.0% | |
| TGATCAAACGACGTATCCCC+AGG | - | chr8_3:60141690-60141709 | Msa1299120:CDS | 50.0% | |
| GATCAAACGACGTATCCCCA+GGG | - | chr8_3:60141691-60141710 | Msa1299120:CDS | 50.0% | |
| ATCAAACGACGTATCCCCAG+GGG | - | chr8_3:60141692-60141711 | Msa1299120:CDS | 50.0% | |
| GCTCTTCTGATGTGCAGAAG+TGG | - | chr8_3:60141884-60141903 | Msa1299120:intron | 50.0% | |
| ! | GAGCTCTGATAAACTGGCGG+AGG | - | chr8_3:60140742-60140761 | Msa1299120:CDS | 55.0% |
| TGGTCTCCTCGATTGCTTGG+AGG | + | chr8_3:60141670-60141689 | None:intergenic | 55.0% | |
| AGAAGAGCTCAGCTCCTCCA+AGG | + | chr8_3:60141872-60141891 | None:intergenic | 55.0% | |
| ! | GAGCTCTGATAAACTGGCGG+AGG | - | chr8_3:60140742-60140761 | Msa1299120:CDS | 55.0% |
| TGGTCTCCTCGATTGCTTGG+AGG | + | chr8_3:60141670-60141689 | None:intergenic | 55.0% | |
| AGAAGAGCTCAGCTCCTCCA+AGG | + | chr8_3:60141872-60141891 | None:intergenic | 55.0% | |
| GGACAGCTATGATGAGCGGG+AGG | - | chr8_3:60141204-60141223 | Msa1299120:intron | 60.0% | |
| GGACAGCTATGATGAGCGGG+AGG | - | chr8_3:60141204-60141223 | Msa1299120:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 60140487 | 60141963 | 60140487 | ID=Msa1299120;Name=Msa1299120 |
| chr8_3 | mRNA | 60140487 | 60141963 | 60140487 | ID=Msa1299120-mRNA-1;Parent=Msa1299120;Name=Msa1299120-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|0.71|1|1|7|0|193 |
| chr8_3 | exon | 60141903 | 60141963 | 60141903 | ID=Msa1299120-mRNA-1:exon:17499;Parent=Msa1299120-mRNA-1 |
| chr8_3 | exon | 60141650 | 60141760 | 60141650 | ID=Msa1299120-mRNA-1:exon:17498;Parent=Msa1299120-mRNA-1 |
| chr8_3 | exon | 60141351 | 60141434 | 60141351 | ID=Msa1299120-mRNA-1:exon:17497;Parent=Msa1299120-mRNA-1 |
| chr8_3 | exon | 60141215 | 60141262 | 60141215 | ID=Msa1299120-mRNA-1:exon:17496;Parent=Msa1299120-mRNA-1 |
| chr8_3 | exon | 60141079 | 60141129 | 60141079 | ID=Msa1299120-mRNA-1:exon:17495;Parent=Msa1299120-mRNA-1 |
| chr8_3 | exon | 60140737 | 60140835 | 60140737 | ID=Msa1299120-mRNA-1:exon:17494;Parent=Msa1299120-mRNA-1 |
| chr8_3 | exon | 60140487 | 60140614 | 60140487 | ID=Msa1299120-mRNA-1:exon:17493;Parent=Msa1299120-mRNA-1 |
| chr8_3 | CDS | 60141903 | 60141963 | 60141903 | ID=Msa1299120-mRNA-1:cds;Parent=Msa1299120-mRNA-1 |
| chr8_3 | CDS | 60141650 | 60141760 | 60141650 | ID=Msa1299120-mRNA-1:cds;Parent=Msa1299120-mRNA-1 |
| chr8_3 | CDS | 60141351 | 60141434 | 60141351 | ID=Msa1299120-mRNA-1:cds;Parent=Msa1299120-mRNA-1 |
| chr8_3 | CDS | 60141215 | 60141262 | 60141215 | ID=Msa1299120-mRNA-1:cds;Parent=Msa1299120-mRNA-1 |
| chr8_3 | CDS | 60141079 | 60141129 | 60141079 | ID=Msa1299120-mRNA-1:cds;Parent=Msa1299120-mRNA-1 |
| chr8_3 | CDS | 60140737 | 60140835 | 60140737 | ID=Msa1299120-mRNA-1:cds;Parent=Msa1299120-mRNA-1 |
| chr8_3 | CDS | 60140487 | 60140614 | 60140487 | ID=Msa1299120-mRNA-1:cds;Parent=Msa1299120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
