Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210220 | A0A072V0C0 | 84.302 | 172 | 25 | 1 | 1 | 170 | 1 | 172 | 2.45e-83 | 253 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0610840 | Msa1210220 | -0.818229 | 2.186350e-52 | -8.615850e-47 |
| Msa0669410 | Msa1210220 | 0.802218 | 6.228176e-49 | -8.615850e-47 |
| Msa0802830 | Msa1210220 | 0.821992 | 3.005279e-53 | -8.615850e-47 |
| Msa0820850 | Msa1210220 | 0.826745 | 2.291750e-54 | -8.615850e-47 |
| Msa0388950 | Msa1210220 | 0.803255 | 3.804000e-49 | -8.615850e-47 |
| Msa0434000 | Msa1210220 | 0.811390 | 7.170380e-51 | -8.615850e-47 |
| Msa0342750 | Msa1210220 | 0.805311 | 1.419318e-49 | -8.615850e-47 |
| Msa1210220 | Msa1210940 | 0.995756 | 1.489564e-219 | -8.615850e-47 |
| Msa1210220 | Msa1299120 | 0.805000 | 1.648425e-49 | -8.615850e-47 |
| Msa1210220 | Msa1313140 | 0.801011 | 1.101255e-48 | -8.615850e-47 |
| Msa1210220 | Msa1319800 | 0.811728 | 6.054001e-51 | -8.615850e-47 |
| Msa1210220 | Msa1458750 | 0.810988 | 8.763706e-51 | -8.615850e-47 |
| Msa0529040 | Msa1210220 | 0.808971 | 2.382976e-50 | -8.615850e-47 |
| Msa0575010 | Msa1210220 | 0.805703 | 1.174445e-49 | -8.615850e-47 |
| Msa0849030 | Msa1210220 | 0.813332 | 2.701010e-51 | -8.615850e-47 |
| Msa0861130 | Msa1210220 | 0.825147 | 5.493631e-54 | -8.615850e-47 |
| Msa0876580 | Msa1210220 | 0.811875 | 5.626353e-51 | -8.615850e-47 |
| Msa0925190 | Msa1210220 | 0.800516 | 1.389567e-48 | -8.615850e-47 |
| Msa0932830 | Msa1210220 | 0.814606 | 1.414212e-51 | -8.615850e-47 |
| Msa0966750 | Msa1210220 | 0.801310 | 9.565762e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210220 | MtrunA17_Chr4g0055101 | 82.941 | 170 | 27 | 1 | 3 | 170 | 8 | 177 | 3.59e-83 | 244 |
| Msa1210220 | MtrunA17_Chr4g0059481 | 56.019 | 216 | 36 | 6 | 14 | 171 | 25 | 239 | 8.49e-62 | 191 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCATTGTCGCAAGAGATTT+TGG | 0.265753 | 8_1:-69015723 | None:intergenic |
| GATGAGCGGGAGGAAGAATT+TGG | 0.312405 | 8_1:+69014993 | Msa1210220:CDS |
| AAGCCATAATCTGCTGATTT+CGG | 0.337263 | 8_1:-69014552 | None:intergenic |
| GAACCGAAATCAGCAGATTA+TGG | 0.378368 | 8_1:+69014549 | Msa1210220:CDS |
| TAGAAATAGTGGAAATCATC+AGG | 0.380708 | 8_1:-69014851 | None:intergenic |
| TTTCATGAGCTCTGATAAAC+TGG | 0.396861 | 8_1:+69014521 | Msa1210220:CDS |
| TTGATTCATGCAGGAGGAAA+AGG | 0.416587 | 8_1:+69015602 | Msa1210220:intron |
| AAATCTCTTGCGACAATGAC+AGG | 0.424239 | 8_1:+69015726 | Msa1210220:CDS |
| ACGACATGGACATTTCAAAC+TGG | 0.436567 | 8_1:+69015118 | Msa1210220:CDS |
| TGCTCAAACGACGTTTCCCC+AGG | 0.439031 | 8_1:+69015469 | Msa1210220:CDS |
| GCATGGTCTCCTCGATTGCT+TGG | 0.439560 | 8_1:-69015449 | None:intergenic |
| GATGATTTCCACTATTTCTA+CGG | 0.471616 | 8_1:+69014854 | Msa1210220:CDS |
| TAATACTTCCGTAGAAATAG+TGG | 0.477563 | 8_1:-69014862 | None:intergenic |
| ATCCGAGGACATTTCAACCT+TGG | 0.485344 | 8_1:+69015631 | Msa1210220:CDS |
| CGAGGACATTTCAACCTTGG+AGG | 0.511066 | 8_1:+69015634 | Msa1210220:CDS |
| TGGTCTCCTCGATTGCTTGG+AGG | 0.522368 | 8_1:-69015446 | None:intergenic |
| CTCCAAGGTTGAAATGTCCT+CGG | 0.526128 | 8_1:-69015633 | None:intergenic |
| AGAGGACAGCTATGATGAGC+GGG | 0.527843 | 8_1:+69014980 | Msa1210220:CDS |
| GCGCTTCTGATGTGCAGAAG+TGG | 0.545724 | 8_1:+69015663 | Msa1210220:CDS |
| TTGTATTTATCGGCTTTGGT+TGG | 0.554582 | 8_1:-69015401 | None:intergenic |
| AGCTAAAACAAAAGAAGAAG+AGG | 0.557716 | 8_1:+69014962 | Msa1210220:intron |
| ATAAATACAAAACTATCAGA+TGG | 0.567313 | 8_1:+69015414 | Msa1210220:CDS |
| GGGGAAACGTCGTTTGAGCA+TGG | 0.584626 | 8_1:-69015466 | None:intergenic |
| AATCTCTTGCGACAATGACA+GGG | 0.594090 | 8_1:+69015727 | Msa1210220:CDS |
| GAGCTCTGATAAACTGGCGG+AGG | 0.595057 | 8_1:+69014527 | Msa1210220:CDS |
| ATTTCAAACTGGAAAATCGA+TGG | 0.595540 | 8_1:+69015129 | Msa1210220:CDS |
| TGACGCAGAAGAAGAATCTG+AGG | 0.596338 | 8_1:+69014467 | Msa1210220:CDS |
| GATGCAAATGATGATTCTGA+AGG | 0.605567 | 8_1:+69015695 | Msa1210220:CDS |
| GCTCAAACGACGTTTCCCCA+GGG | 0.608741 | 8_1:+69015470 | Msa1210220:CDS |
| AGAAATAGTGGAAATCATCA+GGG | 0.608858 | 8_1:-69014850 | None:intergenic |
| AGAAGCGCTCAGCTCCTCCA+AGG | 0.610612 | 8_1:-69015648 | None:intergenic |
| AGGAAAAGGCAAAGAATCCG+AGG | 0.634732 | 8_1:+69015616 | Msa1210220:CDS |
| AAGAGGACAGCTATGATGAG+CGG | 0.651595 | 8_1:+69014979 | Msa1210220:CDS |
| TTTCATCCTCCAAGCAATCG+AGG | 0.655223 | 8_1:+69015440 | Msa1210220:CDS |
| ATCTCTTGCGACAATGACAG+GGG | 0.658631 | 8_1:+69015728 | Msa1210220:CDS |
| CTCAAACGACGTTTCCCCAG+GGG | 0.662182 | 8_1:+69015471 | Msa1210220:CDS |
| TGAAGATGAAATTGACGACA+TGG | 0.666872 | 8_1:+69015104 | Msa1210220:CDS |
| CATGAGCTCTGATAAACTGG+CGG | 0.669381 | 8_1:+69014524 | Msa1210220:CDS |
| GAAATAGTGGAAATCATCAG+GGG | 0.685394 | 8_1:-69014849 | None:intergenic |
| AAAGAAGAATAATACCCCTG+GGG | 0.748744 | 8_1:-69015485 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAATTATTATTATTATTGA+TGG | + | chr8_1:69014935-69014954 | Msa1210220:intron | 10.0% |
| !!! | AATTTGAATTTTATTTGAAA+CGG | + | chr8_1:69015226-69015245 | Msa1210220:intron | 10.0% |
| !! | GTAATTATTATTATTATTGA+TGG | + | chr8_1:69014935-69014954 | Msa1210220:intron | 10.0% |
| !!! | AATTTGAATTTTATTTGAAA+CGG | + | chr8_1:69015226-69015245 | Msa1210220:intron | 10.0% |
| !!! | TTATTGTTTTTTCTGATTTA+AGG | + | chr8_1:69015018-69015037 | Msa1210220:intron | 15.0% |
| !!! | TTATTGTTTTTTCTGATTTA+AGG | + | chr8_1:69015018-69015037 | Msa1210220:intron | 15.0% |
| !! | TGTTAATGTTTATAATGTGT+TGG | + | chr8_1:69014912-69014931 | Msa1210220:intron | 20.0% |
| !! | GTTAATGTTTATAATGTGTT+GGG | + | chr8_1:69014913-69014932 | Msa1210220:intron | 20.0% |
| !! | ATTAAGCAAATGAAATCAAT+CGG | - | chr8_1:69015292-69015311 | None:intergenic | 20.0% |
| !!! | TCTGATAGTTTTGTATTTAT+CGG | - | chr8_1:69015414-69015433 | None:intergenic | 20.0% |
| !! | ATAAATACAAAACTATCAGA+TGG | + | chr8_1:69015414-69015433 | Msa1210220:CDS | 20.0% |
| !! | TGTTAATGTTTATAATGTGT+TGG | + | chr8_1:69014912-69014931 | Msa1210220:intron | 20.0% |
| !! | GTTAATGTTTATAATGTGTT+GGG | + | chr8_1:69014913-69014932 | Msa1210220:intron | 20.0% |
| !! | ATTAAGCAAATGAAATCAAT+CGG | - | chr8_1:69015292-69015311 | None:intergenic | 20.0% |
| !!! | TCTGATAGTTTTGTATTTAT+CGG | - | chr8_1:69015414-69015433 | None:intergenic | 20.0% |
| !! | ATAAATACAAAACTATCAGA+TGG | + | chr8_1:69015414-69015433 | Msa1210220:CDS | 20.0% |
| ! | ATTATTAGAAGATGAATTCG+AGG | + | chr8_1:69014672-69014691 | Msa1210220:intron | 25.0% |
| ! | AATAATTATTGATGCAGATG+AGG | + | chr8_1:69015377-69015396 | Msa1210220:intron | 25.0% |
| ! | ATTATTAGAAGATGAATTCG+AGG | + | chr8_1:69014672-69014691 | Msa1210220:intron | 25.0% |
| ! | AATAATTATTGATGCAGATG+AGG | + | chr8_1:69015377-69015396 | Msa1210220:intron | 25.0% |
| ! | ATTTTTGAATGCGTTGTTGT+TGG | + | chr8_1:69014742-69014761 | Msa1210220:intron | 30.0% |
| !! | TTGATTGATGATGCAGTAAA+AGG | + | chr8_1:69014779-69014798 | Msa1210220:intron | 30.0% |
| ! | AGAAATAGTGGAAATCATCA+GGG | - | chr8_1:69014853-69014872 | None:intergenic | 30.0% |
| ! | TAGAAATAGTGGAAATCATC+AGG | - | chr8_1:69014854-69014873 | None:intergenic | 30.0% |
| !! | GATGATTTCCACTATTTCTA+CGG | + | chr8_1:69014854-69014873 | Msa1210220:CDS | 30.0% |
| TAATACTTCCGTAGAAATAG+TGG | - | chr8_1:69014865-69014884 | None:intergenic | 30.0% | |
| AGCTAAAACAAAAGAAGAAG+AGG | + | chr8_1:69014962-69014981 | Msa1210220:intron | 30.0% | |
| ATTTCAAACTGGAAAATCGA+TGG | + | chr8_1:69015129-69015148 | Msa1210220:CDS | 30.0% | |
| ! | GAAACTCAAAGAGAGATTTT+CGG | + | chr8_1:69015248-69015267 | Msa1210220:intron | 30.0% |
| !!! | AGTTTTGTATTTATCGGCTT+TGG | - | chr8_1:69015408-69015427 | None:intergenic | 30.0% |
| ! | ATTTTTGAATGCGTTGTTGT+TGG | + | chr8_1:69014742-69014761 | Msa1210220:intron | 30.0% |
| !! | TTGATTGATGATGCAGTAAA+AGG | + | chr8_1:69014779-69014798 | Msa1210220:intron | 30.0% |
| ! | AGAAATAGTGGAAATCATCA+GGG | - | chr8_1:69014853-69014872 | None:intergenic | 30.0% |
| ! | TAGAAATAGTGGAAATCATC+AGG | - | chr8_1:69014854-69014873 | None:intergenic | 30.0% |
| !! | GATGATTTCCACTATTTCTA+CGG | + | chr8_1:69014854-69014873 | Msa1210220:CDS | 30.0% |
| TAATACTTCCGTAGAAATAG+TGG | - | chr8_1:69014865-69014884 | None:intergenic | 30.0% | |
| AGCTAAAACAAAAGAAGAAG+AGG | + | chr8_1:69014962-69014981 | Msa1210220:intron | 30.0% | |
| ATTTCAAACTGGAAAATCGA+TGG | + | chr8_1:69015129-69015148 | Msa1210220:CDS | 30.0% | |
| ! | GAAACTCAAAGAGAGATTTT+CGG | + | chr8_1:69015248-69015267 | Msa1210220:intron | 30.0% |
| !!! | AGTTTTGTATTTATCGGCTT+TGG | - | chr8_1:69015408-69015427 | None:intergenic | 30.0% |
| ! | TTTCATGAGCTCTGATAAAC+TGG | + | chr8_1:69014521-69014540 | Msa1210220:CDS | 35.0% |
| !! | AAGCCATAATCTGCTGATTT+CGG | - | chr8_1:69014555-69014574 | None:intergenic | 35.0% |
| AGTATTACTACTCTTCTTGC+AGG | + | chr8_1:69014585-69014604 | Msa1210220:intron | 35.0% | |
| ! | TCACTAGTTTAGAATGCGTT+GGG | + | chr8_1:69014632-69014651 | Msa1210220:intron | 35.0% |
| ! | ATCAGGGGTCATGTATTTTA+TGG | - | chr8_1:69014837-69014856 | None:intergenic | 35.0% |
| ! | GAAATAGTGGAAATCATCAG+GGG | - | chr8_1:69014852-69014871 | None:intergenic | 35.0% |
| ! | TCATGTGTTTAGAATGTGTC+TGG | + | chr8_1:69015049-69015068 | Msa1210220:intron | 35.0% |
| TGAAGATGAAATTGACGACA+TGG | + | chr8_1:69015104-69015123 | Msa1210220:CDS | 35.0% | |
| !! | TTGTATTTATCGGCTTTGGT+TGG | - | chr8_1:69015404-69015423 | None:intergenic | 35.0% |
| AAAGAAGAATAATACCCCTG+GGG | - | chr8_1:69015488-69015507 | None:intergenic | 35.0% | |
| GAAAGAAGAATAATACCCCT+GGG | - | chr8_1:69015489-69015508 | None:intergenic | 35.0% | |
| AGAAAGAAGAATAATACCCC+TGG | - | chr8_1:69015490-69015509 | None:intergenic | 35.0% | |
| !! | TGATTATTGATTCATGCAGG+AGG | + | chr8_1:69015596-69015615 | Msa1210220:intron | 35.0% |
| GATGCAAATGATGATTCTGA+AGG | + | chr8_1:69015695-69015714 | Msa1210220:CDS | 35.0% | |
| ! | TTTCATGAGCTCTGATAAAC+TGG | + | chr8_1:69014521-69014540 | Msa1210220:CDS | 35.0% |
| !! | AAGCCATAATCTGCTGATTT+CGG | - | chr8_1:69014555-69014574 | None:intergenic | 35.0% |
| AGTATTACTACTCTTCTTGC+AGG | + | chr8_1:69014585-69014604 | Msa1210220:intron | 35.0% | |
| ! | TCACTAGTTTAGAATGCGTT+GGG | + | chr8_1:69014632-69014651 | Msa1210220:intron | 35.0% |
| ! | ATCAGGGGTCATGTATTTTA+TGG | - | chr8_1:69014837-69014856 | None:intergenic | 35.0% |
| ! | GAAATAGTGGAAATCATCAG+GGG | - | chr8_1:69014852-69014871 | None:intergenic | 35.0% |
| ! | TCATGTGTTTAGAATGTGTC+TGG | + | chr8_1:69015049-69015068 | Msa1210220:intron | 35.0% |
| TGAAGATGAAATTGACGACA+TGG | + | chr8_1:69015104-69015123 | Msa1210220:CDS | 35.0% | |
| !! | TTGTATTTATCGGCTTTGGT+TGG | - | chr8_1:69015404-69015423 | None:intergenic | 35.0% |
| AAAGAAGAATAATACCCCTG+GGG | - | chr8_1:69015488-69015507 | None:intergenic | 35.0% | |
| GAAAGAAGAATAATACCCCT+GGG | - | chr8_1:69015489-69015508 | None:intergenic | 35.0% | |
| AGAAAGAAGAATAATACCCC+TGG | - | chr8_1:69015490-69015509 | None:intergenic | 35.0% | |
| !! | TGATTATTGATTCATGCAGG+AGG | + | chr8_1:69015596-69015615 | Msa1210220:intron | 35.0% |
| GATGCAAATGATGATTCTGA+AGG | + | chr8_1:69015695-69015714 | Msa1210220:CDS | 35.0% | |
| GAACCGAAATCAGCAGATTA+TGG | + | chr8_1:69014549-69014568 | Msa1210220:CDS | 40.0% | |
| ! | GTCACTAGTTTAGAATGCGT+TGG | + | chr8_1:69014631-69014650 | Msa1210220:intron | 40.0% |
| ACGACATGGACATTTCAAAC+TGG | + | chr8_1:69015118-69015137 | Msa1210220:CDS | 40.0% | |
| !! | GCGTGATTATTGATTCATGC+AGG | + | chr8_1:69015593-69015612 | Msa1210220:intron | 40.0% |
| TTGATTCATGCAGGAGGAAA+AGG | + | chr8_1:69015602-69015621 | Msa1210220:intron | 40.0% | |
| ! | GTCATTGTCGCAAGAGATTT+TGG | - | chr8_1:69015726-69015745 | None:intergenic | 40.0% |
| AAATCTCTTGCGACAATGAC+AGG | + | chr8_1:69015726-69015745 | Msa1210220:CDS | 40.0% | |
| AATCTCTTGCGACAATGACA+GGG | + | chr8_1:69015727-69015746 | Msa1210220:CDS | 40.0% | |
| GAACCGAAATCAGCAGATTA+TGG | + | chr8_1:69014549-69014568 | Msa1210220:CDS | 40.0% | |
| ! | GTCACTAGTTTAGAATGCGT+TGG | + | chr8_1:69014631-69014650 | Msa1210220:intron | 40.0% |
| ACGACATGGACATTTCAAAC+TGG | + | chr8_1:69015118-69015137 | Msa1210220:CDS | 40.0% | |
| !! | GCGTGATTATTGATTCATGC+AGG | + | chr8_1:69015593-69015612 | Msa1210220:intron | 40.0% |
| TTGATTCATGCAGGAGGAAA+AGG | + | chr8_1:69015602-69015621 | Msa1210220:intron | 40.0% | |
| ! | GTCATTGTCGCAAGAGATTT+TGG | - | chr8_1:69015726-69015745 | None:intergenic | 40.0% |
| AAATCTCTTGCGACAATGAC+AGG | + | chr8_1:69015726-69015745 | Msa1210220:CDS | 40.0% | |
| AATCTCTTGCGACAATGACA+GGG | + | chr8_1:69015727-69015746 | Msa1210220:CDS | 40.0% | |
| TGACGCAGAAGAAGAATCTG+AGG | + | chr8_1:69014467-69014486 | Msa1210220:CDS | 45.0% | |
| ! | CATGAGCTCTGATAAACTGG+CGG | + | chr8_1:69014524-69014543 | Msa1210220:CDS | 45.0% |
| AAGAGGACAGCTATGATGAG+CGG | + | chr8_1:69014979-69014998 | Msa1210220:CDS | 45.0% | |
| TTTCATCCTCCAAGCAATCG+AGG | + | chr8_1:69015440-69015459 | Msa1210220:CDS | 45.0% | |
| AGGAAAAGGCAAAGAATCCG+AGG | + | chr8_1:69015616-69015635 | Msa1210220:CDS | 45.0% | |
| ATCCGAGGACATTTCAACCT+TGG | + | chr8_1:69015631-69015650 | Msa1210220:CDS | 45.0% | |
| CTCCAAGGTTGAAATGTCCT+CGG | - | chr8_1:69015636-69015655 | None:intergenic | 45.0% | |
| ATCTCTTGCGACAATGACAG+GGG | + | chr8_1:69015728-69015747 | Msa1210220:CDS | 45.0% | |
| TGACGCAGAAGAAGAATCTG+AGG | + | chr8_1:69014467-69014486 | Msa1210220:CDS | 45.0% | |
| ! | CATGAGCTCTGATAAACTGG+CGG | + | chr8_1:69014524-69014543 | Msa1210220:CDS | 45.0% |
| AAGAGGACAGCTATGATGAG+CGG | + | chr8_1:69014979-69014998 | Msa1210220:CDS | 45.0% | |
| TTTCATCCTCCAAGCAATCG+AGG | + | chr8_1:69015440-69015459 | Msa1210220:CDS | 45.0% | |
| AGGAAAAGGCAAAGAATCCG+AGG | + | chr8_1:69015616-69015635 | Msa1210220:CDS | 45.0% | |
| ATCCGAGGACATTTCAACCT+TGG | + | chr8_1:69015631-69015650 | Msa1210220:CDS | 45.0% | |
| CTCCAAGGTTGAAATGTCCT+CGG | - | chr8_1:69015636-69015655 | None:intergenic | 45.0% | |
| ATCTCTTGCGACAATGACAG+GGG | + | chr8_1:69015728-69015747 | Msa1210220:CDS | 45.0% | |
| AGAGGACAGCTATGATGAGC+GGG | + | chr8_1:69014980-69014999 | Msa1210220:CDS | 50.0% | |
| GATGAGCGGGAGGAAGAATT+TGG | + | chr8_1:69014993-69015012 | Msa1210220:CDS | 50.0% | |
| CGAGGACATTTCAACCTTGG+AGG | + | chr8_1:69015634-69015653 | Msa1210220:CDS | 50.0% | |
| AGAGGACAGCTATGATGAGC+GGG | + | chr8_1:69014980-69014999 | Msa1210220:CDS | 50.0% | |
| GATGAGCGGGAGGAAGAATT+TGG | + | chr8_1:69014993-69015012 | Msa1210220:CDS | 50.0% | |
| CGAGGACATTTCAACCTTGG+AGG | + | chr8_1:69015634-69015653 | Msa1210220:CDS | 50.0% | |
| ! | GAGCTCTGATAAACTGGCGG+AGG | + | chr8_1:69014527-69014546 | Msa1210220:CDS | 55.0% |
| TGGTCTCCTCGATTGCTTGG+AGG | - | chr8_1:69015449-69015468 | None:intergenic | 55.0% | |
| GCATGGTCTCCTCGATTGCT+TGG | - | chr8_1:69015452-69015471 | None:intergenic | 55.0% | |
| GGGGAAACGTCGTTTGAGCA+TGG | - | chr8_1:69015469-69015488 | None:intergenic | 55.0% | |
| TGCTCAAACGACGTTTCCCC+AGG | + | chr8_1:69015469-69015488 | Msa1210220:CDS | 55.0% | |
| GCTCAAACGACGTTTCCCCA+GGG | + | chr8_1:69015470-69015489 | Msa1210220:CDS | 55.0% | |
| CTCAAACGACGTTTCCCCAG+GGG | + | chr8_1:69015471-69015490 | Msa1210220:CDS | 55.0% | |
| GCGCTTCTGATGTGCAGAAG+TGG | + | chr8_1:69015663-69015682 | Msa1210220:CDS | 55.0% | |
| ! | GAGCTCTGATAAACTGGCGG+AGG | + | chr8_1:69014527-69014546 | Msa1210220:CDS | 55.0% |
| TGGTCTCCTCGATTGCTTGG+AGG | - | chr8_1:69015449-69015468 | None:intergenic | 55.0% | |
| GCATGGTCTCCTCGATTGCT+TGG | - | chr8_1:69015452-69015471 | None:intergenic | 55.0% | |
| GGGGAAACGTCGTTTGAGCA+TGG | - | chr8_1:69015469-69015488 | None:intergenic | 55.0% | |
| TGCTCAAACGACGTTTCCCC+AGG | + | chr8_1:69015469-69015488 | Msa1210220:CDS | 55.0% | |
| GCTCAAACGACGTTTCCCCA+GGG | + | chr8_1:69015470-69015489 | Msa1210220:CDS | 55.0% | |
| CTCAAACGACGTTTCCCCAG+GGG | + | chr8_1:69015471-69015490 | Msa1210220:CDS | 55.0% | |
| GCGCTTCTGATGTGCAGAAG+TGG | + | chr8_1:69015663-69015682 | Msa1210220:CDS | 55.0% | |
| GGACAGCTATGATGAGCGGG+AGG | + | chr8_1:69014983-69015002 | Msa1210220:CDS | 60.0% | |
| !! | AGAAGCGCTCAGCTCCTCCA+AGG | - | chr8_1:69015651-69015670 | None:intergenic | 60.0% |
| GGACAGCTATGATGAGCGGG+AGG | + | chr8_1:69014983-69015002 | Msa1210220:CDS | 60.0% | |
| !! | AGAAGCGCTCAGCTCCTCCA+AGG | - | chr8_1:69015651-69015670 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 69014459 | 69015772 | 69014459 | ID=Msa1210220;Name=Msa1210220 |
| chr8_1 | mRNA | 69014459 | 69015772 | 69014459 | ID=Msa1210220-mRNA-1;Parent=Msa1210220;Name=Msa1210220-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|0.83|1|1|6|0|189 |
| chr8_1 | exon | 69014459 | 69014585 | 69014459 | ID=Msa1210220-mRNA-1:exon:23084;Parent=Msa1210220-mRNA-1 |
| chr8_1 | exon | 69014795 | 69014878 | 69014795 | ID=Msa1210220-mRNA-1:exon:23085;Parent=Msa1210220-mRNA-1 |
| chr8_1 | exon | 69014964 | 69015014 | 69014964 | ID=Msa1210220-mRNA-1:exon:23086;Parent=Msa1210220-mRNA-1 |
| chr8_1 | exon | 69015100 | 69015150 | 69015100 | ID=Msa1210220-mRNA-1:exon:23087;Parent=Msa1210220-mRNA-1 |
| chr8_1 | exon | 69015394 | 69015492 | 69015394 | ID=Msa1210220-mRNA-1:exon:23088;Parent=Msa1210220-mRNA-1 |
| chr8_1 | exon | 69015615 | 69015772 | 69015615 | ID=Msa1210220-mRNA-1:exon:23089;Parent=Msa1210220-mRNA-1 |
| chr8_1 | CDS | 69014459 | 69014585 | 69014459 | ID=Msa1210220-mRNA-1:cds;Parent=Msa1210220-mRNA-1 |
| chr8_1 | CDS | 69014795 | 69014878 | 69014795 | ID=Msa1210220-mRNA-1:cds;Parent=Msa1210220-mRNA-1 |
| chr8_1 | CDS | 69014964 | 69015014 | 69014964 | ID=Msa1210220-mRNA-1:cds;Parent=Msa1210220-mRNA-1 |
| chr8_1 | CDS | 69015100 | 69015150 | 69015100 | ID=Msa1210220-mRNA-1:cds;Parent=Msa1210220-mRNA-1 |
| chr8_1 | CDS | 69015394 | 69015492 | 69015394 | ID=Msa1210220-mRNA-1:cds;Parent=Msa1210220-mRNA-1 |
| chr8_1 | CDS | 69015615 | 69015772 | 69015615 | ID=Msa1210220-mRNA-1:cds;Parent=Msa1210220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
