Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1300620 | XP_013458203.1 | 97.772 | 359 | 8 | 0 | 57 | 415 | 277 | 635 | 0.0 | 732 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1300620 | sp|Q9NYV6|RRN3_HUMAN | 31.908 | 304 | 181 | 9 | 72 | 353 | 310 | 609 | 3.29e-29 | 123 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1300620 | A0A072UQX1 | 97.772 | 359 | 8 | 0 | 57 | 415 | 277 | 635 | 0.0 | 732 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0072420 | Msa1300620 | 0.807129 | 5.876391e-50 | -8.615850e-47 |
Msa0628410 | Msa1300620 | 0.830402 | 2.997643e-55 | -8.615850e-47 |
Msa0642160 | Msa1300620 | 0.818323 | 2.080947e-52 | -8.615850e-47 |
Msa1235610 | Msa1300620 | 0.808234 | 3.423638e-50 | -8.615850e-47 |
Msa1277260 | Msa1300620 | 0.827575 | 1.450162e-54 | -8.615850e-47 |
Msa1300620 | Msa1315890 | 0.839307 | 1.713456e-57 | -8.615850e-47 |
Msa1300620 | Msa1329730 | 0.934206 | 5.780162e-96 | -8.615850e-47 |
Msa1300620 | Msa1329750 | 0.849845 | 2.489271e-60 | -8.615850e-47 |
Msa1300620 | Msa1411970 | 0.833082 | 6.542528e-56 | -8.615850e-47 |
Msa1085420 | Msa1300620 | 0.809109 | 2.225718e-50 | -8.615850e-47 |
Msa1105510 | Msa1300620 | 0.808424 | 3.118439e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1300620 | MtrunA17_Chr4g0066001 | 97.772 | 359 | 8 | 0 | 57 | 415 | 277 | 635 | 0.0 | 732 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1300620 | AT1G30590.1 | 51.289 | 388 | 168 | 6 | 31 | 415 | 234 | 603 | 1.31e-121 | 366 |
Msa1300620 | AT1G30590.2 | 51.289 | 388 | 168 | 6 | 31 | 415 | 237 | 606 | 1.34e-121 | 366 |
Msa1300620 | AT1G30590.3 | 51.289 | 388 | 168 | 6 | 31 | 415 | 237 | 606 | 1.34e-121 | 366 |
Msa1300620 | AT2G34750.1 | 51.261 | 357 | 149 | 5 | 62 | 414 | 278 | 613 | 1.19e-112 | 343 |
Msa1300620 | AT2G39240.2 | 47.674 | 344 | 150 | 6 | 67 | 410 | 255 | 568 | 2.43e-93 | 292 |
Msa1300620 | AT2G39240.1 | 47.674 | 344 | 150 | 6 | 67 | 410 | 255 | 568 | 2.43e-93 | 292 |
Find 99 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACAATGGTGTCTTAGAAAA+TGG | 0.144213 | 8_3:-62288724 | Msa1300620:three_prime_UTR |
ATCTATGAAATATGGGTTTC+AGG | 0.216795 | 8_3:-62288869 | Msa1300620:CDS |
ACGCCCAAATCTATGAAATA+TGG | 0.220265 | 8_3:-62288877 | Msa1300620:CDS |
AAACCCATATTTCATAGATT+TGG | 0.238800 | 8_3:+62288873 | None:intergenic |
TGCTTAGATGCAACTGATAT+TGG | 0.257776 | 8_3:-62288401 | Msa1300620:three_prime_UTR |
ATGGAAGAAAATTCCAGTTT+TGG | 0.268915 | 8_3:+62291509 | Msa1300630:CDS |
CAGCTATTGTAGCATTTGTT+TGG | 0.289410 | 8_3:-62288446 | Msa1300620:three_prime_UTR |
TAGAAAATGGGCACTCCTAT+TGG | 0.306255 | 8_3:-62288711 | Msa1300620:three_prime_UTR |
TTGGCTTCTTGTTCCAAAAC+TGG | 0.307226 | 8_3:-62291522 | Msa1300620:CDS |
AACCCATATTTCATAGATTT+GGG | 0.308026 | 8_3:+62288874 | None:intergenic |
AGAAAATGGGCACTCCTATT+GGG | 0.313507 | 8_3:-62288710 | Msa1300620:three_prime_UTR |
TTCAACAAACATGGATCAAA+TGG | 0.328326 | 8_3:+62289258 | None:intergenic |
AAATGCCCATGGAGCTAATC+TGG | 0.332385 | 8_3:-62289640 | Msa1300620:CDS |
GTACCACAGAGTTGTTAAAT+AGG | 0.350184 | 8_3:-62291027 | Msa1300620:CDS |
GCGGATCTTTCCAAGGCTTT+CGG | 0.378275 | 8_3:-62289309 | Msa1300620:CDS |
CCATGTTTCTTCCAATCCAC+TGG | 0.380031 | 8_3:-62291490 | Msa1300620:CDS |
GGATATGAATGATTATGATA+TGG | 0.391946 | 8_3:-62288956 | Msa1300620:CDS |
TAAATTGTTCGTTACCTTCA+AGG | 0.395606 | 8_3:+62289601 | None:intergenic |
AAGCGGCATTACCTAGTAAT+AGG | 0.412363 | 8_3:+62290524 | None:intergenic |
AGTAGAGGAATTTCTAAAAC+AGG | 0.414435 | 8_3:-62289391 | Msa1300620:CDS |
CGCCCAAATCTATGAAATAT+GGG | 0.416002 | 8_3:-62288876 | Msa1300620:CDS |
AAAATTTACACCACATCCTT+CGG | 0.424276 | 8_3:+62290589 | None:intergenic |
TATTAATACTTACAAGATAG+TGG | 0.427707 | 8_3:+62288590 | None:intergenic |
AACTTGCTTGGTTACATTGA+GGG | 0.434857 | 8_3:+62291547 | Msa1300630:intron |
GAACAATTTGCAAGGCAATC+AGG | 0.437527 | 8_3:-62291005 | Msa1300620:CDS |
CTTTCGCATGAGATCATTGA+TGG | 0.440574 | 8_3:-62289693 | Msa1300620:CDS |
ATAAGCTTCACTTTAAGTCT+AGG | 0.441192 | 8_3:+62289665 | None:intergenic |
AAAACTACAACTGCCCCAAT+AGG | 0.447061 | 8_3:+62288696 | None:intergenic |
GAAGTTTCTTTCATCTGAGT+TGG | 0.464213 | 8_3:-62290207 | Msa1300620:CDS |
GTGTTAATCCTCCTATTACT+AGG | 0.469232 | 8_3:-62290535 | Msa1300620:intron |
AACGAGGAGCTCAGTGATAG+TGG | 0.472727 | 8_3:-62289021 | Msa1300620:CDS |
TAAGATAGAAATTCAAGTCC+AGG | 0.475118 | 8_3:+62288484 | None:intergenic |
ACAATGGTGTCTTAGAAAAT+GGG | 0.477975 | 8_3:-62288723 | Msa1300620:three_prime_UTR |
TGACCATCACCAGCTACTTA+AGG | 0.479692 | 8_3:-62289095 | Msa1300620:intron |
ATTTATCCCACCGAAAGCCT+TGG | 0.486236 | 8_3:+62289299 | None:intergenic |
AGAAATTCCTCTACTACGCT+AGG | 0.486325 | 8_3:+62289399 | None:intergenic |
ATGTTTCCAGATTAGCTCCA+TGG | 0.488983 | 8_3:+62289634 | None:intergenic |
ACCGTTGCAATCCAGTGGAT+TGG | 0.489802 | 8_3:+62291479 | Msa1300630:CDS |
ATGTAACCAAGCAAGTTACT+TGG | 0.492325 | 8_3:-62291541 | Msa1300620:CDS |
GATCTTTCCAAGGCTTTCGG+TGG | 0.493557 | 8_3:-62289306 | Msa1300620:CDS |
CAAAACATGCAAAGCTGATA+CGG | 0.494202 | 8_3:-62291409 | Msa1300620:intron |
AAATTGTTCGTTACCTTCAA+GGG | 0.496820 | 8_3:+62289602 | None:intergenic |
ATGAATGATTATGATATGGC+CGG | 0.501292 | 8_3:-62288952 | Msa1300620:CDS |
ACATAAATTGAATCCCTTGA+AGG | 0.505777 | 8_3:-62289615 | Msa1300620:intron |
ATTAATACTTACAAGATAGT+GGG | 0.511025 | 8_3:+62288591 | None:intergenic |
TTTCATAGATTTGGGCGTGA+TGG | 0.514294 | 8_3:+62288882 | None:intergenic |
TAAAACATTACAAAATTGAC+AGG | 0.517336 | 8_3:+62288767 | None:intergenic |
TGTTTCCAGATTAGCTCCAT+GGG | 0.520405 | 8_3:+62289635 | None:intergenic |
ATAGCAAGTCTTTGACGCCC+TGG | 0.523137 | 8_3:-62288502 | Msa1300620:three_prime_UTR |
AAGAAGCCAAGTAACTTGCT+TGG | 0.524330 | 8_3:+62291535 | Msa1300630:intron |
GCTCGAGGCGGATCTTTCCA+AGG | 0.526827 | 8_3:-62289316 | Msa1300620:CDS |
TCAACAAACATGGATCAAAT+GGG | 0.531713 | 8_3:+62289259 | None:intergenic |
ATATGGGTTTCAGGCACAGA+TGG | 0.533433 | 8_3:-62288860 | Msa1300620:CDS |
CCAGTGGATTGGAAGAAACA+TGG | 0.533886 | 8_3:+62291490 | Msa1300630:CDS |
TAACTTGCTTGGTTACATTG+AGG | 0.535877 | 8_3:+62291546 | Msa1300630:intron |
ATCTTTCCAAGGCTTTCGGT+GGG | 0.536074 | 8_3:-62289305 | Msa1300620:CDS |
TAGCATTTGTTTGGAGCTAG+AGG | 0.547346 | 8_3:-62288437 | Msa1300620:three_prime_UTR |
GGAATTTCTAAAACAGGCAA+AGG | 0.549923 | 8_3:-62289385 | Msa1300620:CDS |
TAAAACAGGCAAAGGCTGCT+CGG | 0.551011 | 8_3:-62289377 | Msa1300620:CDS |
CTTGACCAGCGGACAAAATG+TGG | 0.555293 | 8_3:+62289072 | None:intergenic |
TCTTGAATGCTGTCAAAGCA+AGG | 0.555849 | 8_3:-62290939 | Msa1300620:CDS |
GGTTTCAGGCACAGATGGAA+GGG | 0.558054 | 8_3:-62288855 | Msa1300620:CDS |
GGGTTTCAGGCACAGATGGA+AGG | 0.558736 | 8_3:-62288856 | Msa1300620:CDS |
TTGCCACCGTTGCAATCCAG+TGG | 0.561317 | 8_3:+62291474 | Msa1300630:CDS |
CTGTCAAAGCAAGGGCCGAT+TGG | 0.561772 | 8_3:-62290930 | Msa1300620:CDS |
AAGCAAGGGCCGATTGGCTG+AGG | 0.562906 | 8_3:-62290924 | Msa1300620:intron |
TTGGGAATACCTCAGCCAAT+CGG | 0.566052 | 8_3:+62290915 | None:intergenic |
TCAGTTACCTCAACAGTGAA+AGG | 0.568367 | 8_3:+62288645 | None:intergenic |
TTAAATAGGAACAATTTGCA+AGG | 0.569913 | 8_3:-62291013 | Msa1300620:CDS |
AGCATTTGTTTGGAGCTAGA+GGG | 0.572070 | 8_3:-62288436 | Msa1300620:three_prime_UTR |
AAGACCCGCTTCAACACTCC+CGG | 0.576390 | 8_3:+62288933 | None:intergenic |
GATGTTCTATGCATGCGCAT+TGG | 0.580066 | 8_3:-62290615 | Msa1300620:CDS |
TGAATGATTATGATATGGCC+GGG | 0.586844 | 8_3:-62288951 | Msa1300620:CDS |
AAGATAGAAATTCAAGTCCA+GGG | 0.590326 | 8_3:+62288485 | None:intergenic |
ACTGTTGAGGTAACTGAACA+TGG | 0.597240 | 8_3:-62288639 | Msa1300620:three_prime_UTR |
CGGCATTACCTAGTAATAGG+AGG | 0.597341 | 8_3:+62290527 | None:intergenic |
ACTATCACTGAGCTCCTCGT+TGG | 0.597389 | 8_3:+62289023 | None:intergenic |
ATGTTTGCCTAGCGTAGTAG+AGG | 0.599342 | 8_3:-62289406 | Msa1300620:CDS |
GAAAATGGGCACTCCTATTG+GGG | 0.599657 | 8_3:-62288709 | Msa1300620:three_prime_UTR |
AATCCACTGGATTGCAACGG+TGG | 0.601602 | 8_3:-62291477 | Msa1300620:CDS |
ATTTCACTTTCGATCACACA+AGG | 0.602906 | 8_3:+62288375 | None:intergenic |
TCCAATCCACTGGATTGCAA+CGG | 0.606514 | 8_3:-62291480 | Msa1300620:CDS |
ATGGCCGGGAGTGTTGAAGC+GGG | 0.607938 | 8_3:-62288937 | Msa1300620:CDS |
GAAGCTTATCAAAATGCCCA+TGG | 0.616331 | 8_3:-62289651 | Msa1300620:CDS |
ATACAAGTCAAAATTTGCCC+AGG | 0.628013 | 8_3:-62290742 | Msa1300620:intron |
CTTGAATGCTGTCAAAGCAA+GGG | 0.633580 | 8_3:-62290938 | Msa1300620:CDS |
TCGCATGAGATCATTGATGG+AGG | 0.634684 | 8_3:-62289690 | Msa1300620:CDS |
GTTCCTATTTAACAACTCTG+TGG | 0.638060 | 8_3:+62291024 | None:intergenic |
GTTTGTTGAAGAAAAGTGAA+AGG | 0.640363 | 8_3:-62289245 | Msa1300620:intron |
TATGGCCGGGAGTGTTGAAG+CGG | 0.646112 | 8_3:-62288938 | Msa1300620:CDS |
GCATGCGCATTGGATTCCGA+AGG | 0.647857 | 8_3:-62290605 | Msa1300620:CDS |
TGGTTGCTAACATCATACAA+AGG | 0.652099 | 8_3:-62290187 | Msa1300620:intron |
TTAATACTTACAAGATAGTG+GGG | 0.654456 | 8_3:+62288592 | None:intergenic |
GCATTGGATTCCGAAGGATG+TGG | 0.661172 | 8_3:-62290599 | Msa1300620:CDS |
AAACATCTCTGTGAGGACCA+TGG | 0.662377 | 8_3:+62290565 | None:intergenic |
TTTCGATGATTTGCTCGAGG+CGG | 0.688171 | 8_3:-62289328 | Msa1300620:CDS |
GCAGCTACTTATCAACACAA+TGG | 0.714076 | 8_3:-62288739 | Msa1300620:three_prime_UTR |
ATGAATCAAACATCTCTGTG+AGG | 0.746973 | 8_3:+62290558 | None:intergenic |
ATATGATACATATGCCAACG+AGG | 0.781154 | 8_3:-62289037 | Msa1300620:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTATTAGTATGTTATAACT+TGG | - | chr8_3:62288868-62288887 | Msa1300620:CDS | 15.0% |
!! | GTTAATTGAATAACTTGATT+AGG | - | chr8_3:62289129-62289148 | Msa1300620:intron | 20.0% |
!! | AAAACACATTAATGTCAATA+GGG | + | chr8_3:62290040-62290059 | None:intergenic | 20.0% |
!! | AAAAACACATTAATGTCAAT+AGG | + | chr8_3:62290041-62290060 | None:intergenic | 20.0% |
!! | TAAAACATTACAAAATTGAC+AGG | + | chr8_3:62291176-62291195 | None:intergenic | 20.0% |
!!! | TGTCAATTTTGTAATGTTTT+AGG | - | chr8_3:62291175-62291194 | Msa1300620:intron | 20.0% |
!! | ATTAATACTTACAAGATAGT+GGG | + | chr8_3:62291352-62291371 | None:intergenic | 20.0% |
!! | TATTAATACTTACAAGATAG+TGG | + | chr8_3:62291353-62291372 | None:intergenic | 20.0% |
! | TTAAATAGGAACAATTTGCA+AGG | - | chr8_3:62288927-62288946 | Msa1300620:CDS | 25.0% |
! | AAACATAATACATGCAAGTT+AGG | + | chr8_3:62289249-62289268 | None:intergenic | 25.0% |
!!! | ATGTTTTAAGAAAAGCACAA+GGG | + | chr8_3:62289577-62289596 | None:intergenic | 25.0% |
!!! | AATGTTTTAAGAAAAGCACA+AGG | + | chr8_3:62289578-62289597 | None:intergenic | 25.0% |
!! | TGCTTTTCTTAAAACATTCT+TGG | - | chr8_3:62289580-62289599 | Msa1300620:intron | 25.0% |
! | TAATTGTCTTGATATGTTTC+AGG | - | chr8_3:62289669-62289688 | Msa1300620:CDS | 25.0% |
! | ATTAATGTCAATAGGGTTAT+GGG | + | chr8_3:62290033-62290052 | None:intergenic | 25.0% |
! | TACTAGACAAAATAAAACGA+GGG | + | chr8_3:62290095-62290114 | None:intergenic | 25.0% |
! | TTACTAGACAAAATAAAACG+AGG | + | chr8_3:62290096-62290115 | None:intergenic | 25.0% |
!!! | ACTTTTAACTTTATTTGACC+TGG | - | chr8_3:62290150-62290169 | Msa1300620:intron | 25.0% |
!!! | GTTGCTCATTTTATTTGTTT+TGG | - | chr8_3:62290195-62290214 | Msa1300620:CDS | 25.0% |
! | ACCTGTCAAAAATTTATATC+AGG | + | chr8_3:62290514-62290533 | None:intergenic | 25.0% |
! | GGATATGAATGATTATGATA+TGG | - | chr8_3:62290984-62291003 | Msa1300620:CDS | 25.0% |
! | AACCCATATTTCATAGATTT+GGG | + | chr8_3:62291069-62291088 | None:intergenic | 25.0% |
! | AAACCCATATTTCATAGATT+TGG | + | chr8_3:62291070-62291089 | None:intergenic | 25.0% |
! | TTAATACTTACAAGATAGTG+GGG | + | chr8_3:62291351-62291370 | None:intergenic | 25.0% |
! | ATGGAAGAAAATTCCAGTTT+TGG | + | chr8_3:62288434-62288453 | None:intergenic | 30.0% |
!!! | GTTTTGAAGGAAATTAGAAG+TGG | + | chr8_3:62288517-62288536 | None:intergenic | 30.0% |
TATAATCTACAAACTGTGCA+TGG | - | chr8_3:62289091-62289110 | Msa1300620:intron | 30.0% | |
GCATGTATTATGTTTCTTGT+TGG | - | chr8_3:62289254-62289273 | Msa1300620:CDS | 30.0% | |
AAAATTTACACCACATCCTT+CGG | + | chr8_3:62289354-62289373 | None:intergenic | 30.0% | |
! | TTAATGGTGGAAATAAGTTG+TGG | + | chr8_3:62289548-62289567 | None:intergenic | 30.0% |
!!! | TGTTTTAAGAAAAGCACAAG+GGG | + | chr8_3:62289576-62289595 | None:intergenic | 30.0% |
! | CAGCTTTATAATTACAGAAC+AGG | + | chr8_3:62289795-62289814 | None:intergenic | 30.0% |
! | CTTTTGTTGAGTTTTCAGAT+TGG | - | chr8_3:62289867-62289886 | Msa1300620:intron | 30.0% |
TTGACCGCTTTAGTATATAA+TGG | - | chr8_3:62289989-62290008 | Msa1300620:intron | 30.0% | |
CATTAATGTCAATAGGGTTA+TGG | + | chr8_3:62290034-62290053 | None:intergenic | 30.0% | |
! | TTTAACTTTATTTGACCTGG+TGG | - | chr8_3:62290153-62290172 | Msa1300620:intron | 30.0% |
AGCAACAAAATCAAATGTTC+AGG | + | chr8_3:62290181-62290200 | None:intergenic | 30.0% | |
!!! | TTATTTGTTTTGGTGTGAGT+AGG | - | chr8_3:62290205-62290224 | Msa1300620:CDS | 30.0% |
ATAAGCTTCACTTTAAGTCT+AGG | + | chr8_3:62290278-62290297 | None:intergenic | 30.0% | |
ACATAAATTGAATCCCTTGA+AGG | - | chr8_3:62290325-62290344 | Msa1300620:intron | 30.0% | |
AAATTGTTCGTTACCTTCAA+GGG | + | chr8_3:62290341-62290360 | None:intergenic | 30.0% | |
TAAATTGTTCGTTACCTTCA+AGG | + | chr8_3:62290342-62290361 | None:intergenic | 30.0% | |
AACAATTTAGAAAGCTGTCA+TGG | - | chr8_3:62290353-62290372 | Msa1300620:intron | 30.0% | |
AACAAAATGCTATCTCCATT+CGG | + | chr8_3:62290444-62290463 | None:intergenic | 30.0% | |
! | GCCTGATATAAATTTTTGAC+AGG | - | chr8_3:62290510-62290529 | Msa1300620:intron | 30.0% |
!! | AGTAGAGGAATTTCTAAAAC+AGG | - | chr8_3:62290549-62290568 | Msa1300620:CDS | 30.0% |
TCAACAAACATGGATCAAAT+GGG | + | chr8_3:62290684-62290703 | None:intergenic | 30.0% | |
TTCAACAAACATGGATCAAA+TGG | + | chr8_3:62290685-62290704 | None:intergenic | 30.0% | |
!! | TCACTTTTCTTCAACAAACA+TGG | + | chr8_3:62290694-62290713 | None:intergenic | 30.0% |
! | GTTTGTTGAAGAAAAGTGAA+AGG | - | chr8_3:62290695-62290714 | Msa1300620:intron | 30.0% |
! | TGCATTTTCTGTCGTTATAA+CGG | - | chr8_3:62290784-62290803 | Msa1300620:CDS | 30.0% |
! | TTTTGTTGACATGAATGCAA+AGG | - | chr8_3:62290963-62290982 | Msa1300620:CDS | 30.0% |
ATGAATGATTATGATATGGC+CGG | - | chr8_3:62290988-62291007 | Msa1300620:CDS | 30.0% | |
ATCTATGAAATATGGGTTTC+AGG | - | chr8_3:62291071-62291090 | Msa1300620:intron | 30.0% | |
! | GTAGATAATCTGATTTTCGA+CGG | + | chr8_3:62291117-62291136 | None:intergenic | 30.0% |
ACAATGGTGTCTTAGAAAAT+GGG | - | chr8_3:62291217-62291236 | Msa1300620:intron | 30.0% | |
! | TATTTTTCCTTTCACTGTTG+AGG | - | chr8_3:62291288-62291307 | Msa1300620:intron | 30.0% |
! | AGTGGGGAATAAATCTTTTA+TGG | + | chr8_3:62291335-62291354 | None:intergenic | 30.0% |
AAGATAGAAATTCAAGTCCA+GGG | + | chr8_3:62291458-62291477 | Msa1300630:CDS | 30.0% | |
TAAGATAGAAATTCAAGTCC+AGG | + | chr8_3:62291459-62291478 | Msa1300630:CDS | 30.0% | |
! | AACTTGCTTGGTTACATTGA+GGG | + | chr8_3:62288396-62288415 | None:intergenic | 35.0% |
!! | TAACTTGCTTGGTTACATTG+AGG | + | chr8_3:62288397-62288416 | None:intergenic | 35.0% |
ATGTAACCAAGCAAGTTACT+TGG | - | chr8_3:62288399-62288418 | Msa1300620:three_prime_UTR | 35.0% | |
!! | ATCAGCTTTGCATGTTTTGA+AGG | + | chr8_3:62288530-62288549 | None:intergenic | 35.0% |
CAAAACATGCAAAGCTGATA+CGG | - | chr8_3:62288531-62288550 | Msa1300620:three_prime_UTR | 35.0% | |
ATACGGTGCTCTTCATATAA+AGG | - | chr8_3:62288548-62288567 | Msa1300620:three_prime_UTR | 35.0% | |
ATTAGAGGAGATTGAGTACA+TGG | + | chr8_3:62288578-62288597 | None:intergenic | 35.0% | |
TCAATCTCCTCTAATTCCTT+AGG | - | chr8_3:62288583-62288602 | Msa1300620:three_prime_UTR | 35.0% | |
GTACCACAGAGTTGTTAAAT+AGG | - | chr8_3:62288913-62288932 | Msa1300620:CDS | 35.0% | |
GTTCCTATTTAACAACTCTG+TGG | + | chr8_3:62288919-62288938 | None:intergenic | 35.0% | |
GCAAAAAAGTCAGCACAATT+AGG | + | chr8_3:62288980-62288999 | None:intergenic | 35.0% | |
ATACAAGTCAAAATTTGCCC+AGG | - | chr8_3:62289198-62289217 | Msa1300620:intron | 35.0% | |
!! | AAGCCAAATAAAGAGTACCT+GGG | + | chr8_3:62289218-62289237 | None:intergenic | 35.0% |
! | ATGTGGTGTAAATTTTGCCA+TGG | - | chr8_3:62289358-62289377 | Msa1300620:CDS | 35.0% |
ATGAATCAAACATCTCTGTG+AGG | + | chr8_3:62289385-62289404 | None:intergenic | 35.0% | |
GTGTTAATCCTCCTATTACT+AGG | - | chr8_3:62289405-62289424 | Msa1300620:CDS | 35.0% | |
AAATGCATTAAGCAAGGACA+AGG | + | chr8_3:62289445-62289464 | None:intergenic | 35.0% | |
GCTAGTAAATGCATTAAGCA+AGG | + | chr8_3:62289451-62289470 | None:intergenic | 35.0% | |
GGATTAAAAACCACTTATGC+TGG | + | chr8_3:62289482-62289501 | None:intergenic | 35.0% | |
!! | TTTTAAGAAAAGCACAAGGG+GGG | + | chr8_3:62289574-62289593 | None:intergenic | 35.0% |
!!! | GTTTTAAGAAAAGCACAAGG+GGG | + | chr8_3:62289575-62289594 | None:intergenic | 35.0% |
GAAGTTTCTTTCATCTGAGT+TGG | - | chr8_3:62289733-62289752 | Msa1300620:intron | 35.0% | |
TGGTTGCTAACATCATACAA+AGG | - | chr8_3:62289753-62289772 | Msa1300620:intron | 35.0% | |
GCTAACATCATACAAAGGTT+TGG | - | chr8_3:62289758-62289777 | Msa1300620:intron | 35.0% | |
! | GAGTTTTCAGATTGGTAGAT+TGG | - | chr8_3:62289875-62289894 | Msa1300620:intron | 35.0% |
!! | AAAAAACTTGGTGTGCTTGT+GGG | + | chr8_3:62289939-62289958 | None:intergenic | 35.0% |
!! | TAAAAAACTTGGTGTGCTTG+TGG | + | chr8_3:62289940-62289959 | None:intergenic | 35.0% |
GGCAAGCAGAATAAAAAACT+TGG | + | chr8_3:62289951-62289970 | None:intergenic | 35.0% | |
!!! | AGTTTTTTATTCTGCTTGCC+AGG | - | chr8_3:62289951-62289970 | Msa1300620:intron | 35.0% |
ACCGCTTTAGTATATAATGG+TGG | - | chr8_3:62289992-62290011 | Msa1300620:CDS | 35.0% | |
CCCACCATTATATACTAAAG+CGG | + | chr8_3:62289996-62290015 | None:intergenic | 35.0% | |
CCGCTTTAGTATATAATGGT+GGG | - | chr8_3:62289993-62290012 | Msa1300620:CDS | 35.0% | |
! | TAGTATATAATGGTGGGAGA+AGG | - | chr8_3:62289999-62290018 | Msa1300620:CDS | 35.0% |
! | AGTATATAATGGTGGGAGAA+GGG | - | chr8_3:62290000-62290019 | Msa1300620:CDS | 35.0% |
TAAACAGAATGTTCGACTGT+AGG | - | chr8_3:62290385-62290404 | Msa1300620:intron | 35.0% | |
AATGTTCGACTGTAGGATTA+TGG | - | chr8_3:62290392-62290411 | Msa1300620:intron | 35.0% | |
!! | GGAATTTCTAAAACAGGCAA+AGG | - | chr8_3:62290555-62290574 | Msa1300620:CDS | 35.0% |
ATATGATACATATGCCAACG+AGG | - | chr8_3:62290903-62290922 | Msa1300620:intron | 35.0% | |
TGAATGATTATGATATGGCC+GGG | - | chr8_3:62290989-62291008 | Msa1300620:CDS | 35.0% | |
! | ATGGACATTTTGTTCAAGTC+AGG | + | chr8_3:62291042-62291061 | None:intergenic | 35.0% |
ACGCCCAAATCTATGAAATA+TGG | - | chr8_3:62291063-62291082 | Msa1300620:intron | 35.0% | |
CGCCCAAATCTATGAAATAT+GGG | - | chr8_3:62291064-62291083 | Msa1300620:intron | 35.0% | |
CACAATGGTGTCTTAGAAAA+TGG | - | chr8_3:62291216-62291235 | Msa1300620:intron | 35.0% | |
CAGCTATTGTAGCATTTGTT+TGG | - | chr8_3:62291494-62291513 | Msa1300620:CDS | 35.0% | |
TGCTTAGATGCAACTGATAT+TGG | - | chr8_3:62291539-62291558 | Msa1300620:CDS | 35.0% | |
!! | AAGAAGCCAAGTAACTTGCT+TGG | + | chr8_3:62288408-62288427 | None:intergenic | 40.0% |
TTGGCTTCTTGTTCCAAAAC+TGG | - | chr8_3:62288418-62288437 | Msa1300620:three_prime_UTR | 40.0% | |
! | GCTGATTCCTAAGGAATTAG+AGG | + | chr8_3:62288593-62288612 | None:intergenic | 40.0% |
!! | TGATGGTTTGCTGATTCCTA+AGG | + | chr8_3:62288602-62288621 | None:intergenic | 40.0% |
AATCAGCAAACCATCACTCT+CGG | - | chr8_3:62288606-62288625 | Msa1300620:three_prime_UTR | 40.0% | |
CACACAACGATCAGCTATAT+TGG | + | chr8_3:62288842-62288861 | None:intergenic | 40.0% | |
CTCTGTGGTACACTGAAAAA+TGG | + | chr8_3:62288904-62288923 | None:intergenic | 40.0% | |
GAACAATTTGCAAGGCAATC+AGG | - | chr8_3:62288935-62288954 | Msa1300620:CDS | 40.0% | |
TCTTGAATGCTGTCAAAGCA+AGG | - | chr8_3:62289001-62289020 | Msa1300620:CDS | 40.0% | |
CTTGAATGCTGTCAAAGCAA+GGG | - | chr8_3:62289002-62289021 | Msa1300620:CDS | 40.0% | |
TTGCCCAGGTACTCTTTATT+TGG | - | chr8_3:62289212-62289231 | Msa1300620:intron | 40.0% | |
!! | GAAGCCAAATAAAGAGTACC+TGG | + | chr8_3:62289219-62289238 | None:intergenic | 40.0% |
TACATGCAAGTTAGGAACAG+TGG | + | chr8_3:62289241-62289260 | None:intergenic | 40.0% | |
AAGCGGCATTACCTAGTAAT+AGG | + | chr8_3:62289419-62289438 | None:intergenic | 40.0% | |
CACATCATTCATACAACAGG+AGG | + | chr8_3:62289503-62289522 | None:intergenic | 40.0% | |
CTCCTGTTGTATGAATGATG+TGG | - | chr8_3:62289501-62289520 | Msa1300620:intron | 40.0% | |
AGCCACATCATTCATACAAC+AGG | + | chr8_3:62289506-62289525 | None:intergenic | 40.0% | |
! | TTTAAGAAAAGCACAAGGGG+GGG | + | chr8_3:62289573-62289592 | None:intergenic | 40.0% |
! | GTATATAATGGTGGGAGAAG+GGG | - | chr8_3:62290001-62290020 | Msa1300620:CDS | 40.0% |
AATGTCAATAGGGTTATGGG+TGG | + | chr8_3:62290030-62290049 | None:intergenic | 40.0% | |
! | CAAAATAAAACGAGGGTGCA+GGG | + | chr8_3:62290088-62290107 | None:intergenic | 40.0% |
! | ACAAAATAAAACGAGGGTGC+AGG | + | chr8_3:62290089-62290108 | None:intergenic | 40.0% |
CTTTCGCATGAGATCATTGA+TGG | - | chr8_3:62290247-62290266 | Msa1300620:CDS | 40.0% | |
GAAGCTTATCAAAATGCCCA+TGG | - | chr8_3:62290289-62290308 | Msa1300620:intron | 40.0% | |
! | TGTTTCCAGATTAGCTCCAT+GGG | + | chr8_3:62290308-62290327 | None:intergenic | 40.0% |
! | ATGTTTCCAGATTAGCTCCA+TGG | + | chr8_3:62290309-62290328 | None:intergenic | 40.0% |
CTTACAACGTGAAGCTTGTA+TGG | - | chr8_3:62290473-62290492 | Msa1300620:intron | 40.0% | |
AGAAATTCCTCTACTACGCT+AGG | + | chr8_3:62290544-62290563 | None:intergenic | 40.0% | |
!!! | CATTTTCGATGATTTGCTCG+AGG | - | chr8_3:62290609-62290628 | Msa1300620:CDS | 40.0% |
!! | TGAAAGGTGTGTAGCTTTTC+TGG | - | chr8_3:62290711-62290730 | Msa1300620:intron | 40.0% |
!! | GAAAGGTGTGTAGCTTTTCT+GGG | - | chr8_3:62290712-62290731 | Msa1300620:intron | 40.0% |
! | AAAATGTGGCCTTAAGTAGC+TGG | + | chr8_3:62290857-62290876 | None:intergenic | 40.0% |
!!! | TAGTTTTGACTCTTGACCAG+CGG | + | chr8_3:62290882-62290901 | None:intergenic | 40.0% |
TTTCATAGATTTGGGCGTGA+TGG | + | chr8_3:62291061-62291080 | None:intergenic | 40.0% | |
GCAGCTACTTATCAACACAA+TGG | - | chr8_3:62291201-62291220 | Msa1300620:intron | 40.0% | |
TAGAAAATGGGCACTCCTAT+TGG | - | chr8_3:62291229-62291248 | Msa1300620:intron | 40.0% | |
AGAAAATGGGCACTCCTATT+GGG | - | chr8_3:62291230-62291249 | Msa1300620:intron | 40.0% | |
AAAACTACAACTGCCCCAAT+AGG | + | chr8_3:62291247-62291266 | None:intergenic | 40.0% | |
TCAGTTACCTCAACAGTGAA+AGG | + | chr8_3:62291298-62291317 | None:intergenic | 40.0% | |
ACTGTTGAGGTAACTGAACA+TGG | - | chr8_3:62291301-62291320 | Msa1300620:intron | 40.0% | |
! | TAGCATTTGTTTGGAGCTAG+AGG | - | chr8_3:62291503-62291522 | Msa1300620:CDS | 40.0% |
! | AGCATTTGTTTGGAGCTAGA+GGG | - | chr8_3:62291504-62291523 | Msa1300620:CDS | 40.0% |
!! | CCAGTGGATTGGAAGAAACA+TGG | + | chr8_3:62288453-62288472 | None:intergenic | 45.0% |
CCATGTTTCTTCCAATCCAC+TGG | - | chr8_3:62288450-62288469 | Msa1300620:three_prime_UTR | 45.0% | |
TCCAATCCACTGGATTGCAA+CGG | - | chr8_3:62288460-62288479 | Msa1300620:three_prime_UTR | 45.0% | |
TTGGGAATACCTCAGCCAAT+CGG | + | chr8_3:62289028-62289047 | None:intergenic | 45.0% | |
GATGTTCTATGCATGCGCAT+TGG | - | chr8_3:62289325-62289344 | Msa1300620:CDS | 45.0% | |
AAACATCTCTGTGAGGACCA+TGG | + | chr8_3:62289378-62289397 | None:intergenic | 45.0% | |
CGGCATTACCTAGTAATAGG+AGG | + | chr8_3:62289416-62289435 | None:intergenic | 45.0% | |
AAGCAAGGACAAGGTGAAAG+CGG | + | chr8_3:62289436-62289455 | None:intergenic | 45.0% | |
GCATGATAGACCAGCATAAG+TGG | - | chr8_3:62289469-62289488 | Msa1300620:intron | 45.0% | |
CTAAAGCGGTCAAAAGTCGA+TGG | + | chr8_3:62289982-62290001 | None:intergenic | 45.0% | |
TCAAATGTTCAGGATCCACC+AGG | + | chr8_3:62290171-62290190 | None:intergenic | 45.0% | |
TCGCATGAGATCATTGATGG+AGG | - | chr8_3:62290250-62290269 | Msa1300620:CDS | 45.0% | |
AAATGCCCATGGAGCTAATC+TGG | - | chr8_3:62290300-62290319 | Msa1300620:intron | 45.0% | |
ATCTCCATTCGGCAAGATCA+CGG | + | chr8_3:62290433-62290452 | None:intergenic | 45.0% | |
ATGTTTGCCTAGCGTAGTAG+AGG | - | chr8_3:62290534-62290553 | Msa1300620:intron | 45.0% | |
TAAAACAGGCAAAGGCTGCT+CGG | - | chr8_3:62290563-62290582 | Msa1300620:CDS | 45.0% | |
!! | TTTCGATGATTTGCTCGAGG+CGG | - | chr8_3:62290612-62290631 | Msa1300620:CDS | 45.0% |
ATCTTTCCAAGGCTTTCGGT+GGG | - | chr8_3:62290635-62290654 | Msa1300620:intron | 45.0% | |
ATTTATCCCACCGAAAGCCT+TGG | + | chr8_3:62290644-62290663 | None:intergenic | 45.0% | |
TGACCATCACCAGCTACTTA+AGG | - | chr8_3:62290845-62290864 | Msa1300620:intron | 45.0% | |
ATATGGGTTTCAGGCACAGA+TGG | - | chr8_3:62291080-62291099 | Msa1300620:intron | 45.0% | |
GAAAATGGGCACTCCTATTG+GGG | - | chr8_3:62291231-62291250 | Msa1300620:intron | 45.0% | |
!!! | TGGGGCAGTTGTAGTTTTGA+TGG | - | chr8_3:62291249-62291268 | Msa1300620:intron | 45.0% |
ACCGTTGCAATCCAGTGGAT+TGG | + | chr8_3:62288464-62288483 | None:intergenic | 50.0% | |
AATCCACTGGATTGCAACGG+TGG | - | chr8_3:62288463-62288482 | Msa1300620:three_prime_UTR | 50.0% | |
! | GCACACAGGAGTGTGTAGTT+GGG | + | chr8_3:62289046-62289065 | None:intergenic | 50.0% |
! | TGCACACAGGAGTGTGTAGT+TGG | + | chr8_3:62289047-62289066 | None:intergenic | 50.0% |
GTGTGTGTGATGTTGCACAC+AGG | + | chr8_3:62289060-62289079 | None:intergenic | 50.0% | |
GCATTGGATTCCGAAGGATG+TGG | - | chr8_3:62289341-62289360 | Msa1300620:CDS | 50.0% | |
ACAAGGGGGGGATTTAATGG+TGG | + | chr8_3:62289561-62289580 | None:intergenic | 50.0% | |
AGCACAAGGGGGGGATTTAA+TGG | + | chr8_3:62289564-62289583 | None:intergenic | 50.0% | |
CAAAAGTCGATGGACACACC+TGG | + | chr8_3:62289972-62289991 | None:intergenic | 50.0% | |
AAACCCGTGATCTTGCCGAA+TGG | - | chr8_3:62290426-62290445 | Msa1300620:intron | 50.0% | |
TCTCCATTCGGCAAGATCAC+GGG | + | chr8_3:62290432-62290451 | None:intergenic | 50.0% | |
GCGGATCTTTCCAAGGCTTT+CGG | - | chr8_3:62290631-62290650 | Msa1300620:intron | 50.0% | |
GATCTTTCCAAGGCTTTCGG+TGG | - | chr8_3:62290634-62290653 | Msa1300620:intron | 50.0% | |
! | AGGTGTGTAGCTTTTCTGGG+AGG | - | chr8_3:62290715-62290734 | Msa1300620:intron | 50.0% |
TGGTCAGCAGACAGTTGGAA+TGG | + | chr8_3:62290831-62290850 | None:intergenic | 50.0% | |
! | TGGCCTTAAGTAGCTGGTGA+TGG | + | chr8_3:62290851-62290870 | None:intergenic | 50.0% |
! | TAAGGCCACATTTTGTCCGC+TGG | - | chr8_3:62290863-62290882 | Msa1300620:intron | 50.0% |
CTTGACCAGCGGACAAAATG+TGG | + | chr8_3:62290871-62290890 | None:intergenic | 50.0% | |
ACTATCACTGAGCTCCTCGT+TGG | + | chr8_3:62290920-62290939 | None:intergenic | 50.0% | |
AACGAGGAGCTCAGTGATAG+TGG | - | chr8_3:62290919-62290938 | Msa1300620:intron | 50.0% | |
GGTTTCAGGCACAGATGGAA+GGG | - | chr8_3:62291085-62291104 | Msa1300620:intron | 50.0% | |
ATAGCAAGTCTTTGACGCCC+TGG | - | chr8_3:62291438-62291457 | Msa1300620:CDS | 50.0% | |
TTGCCACCGTTGCAATCCAG+TGG | + | chr8_3:62288469-62288488 | None:intergenic | 55.0% | |
CTGTCAAAGCAAGGGCCGAT+TGG | - | chr8_3:62289010-62289029 | Msa1300620:CDS | 55.0% | |
GCATGCGCATTGGATTCCGA+AGG | - | chr8_3:62289335-62289354 | Msa1300620:CDS | 55.0% | |
! | AAAACGAGGGTGCAGGGTGA+TGG | + | chr8_3:62290082-62290101 | None:intergenic | 55.0% |
! | GGTGATGGTCAGCAGACAGT+TGG | + | chr8_3:62290836-62290855 | None:intergenic | 55.0% |
!! | TATGGCCGGGAGTGTTGAAG+CGG | - | chr8_3:62291002-62291021 | Msa1300620:CDS | 55.0% |
AAGACCCGCTTCAACACTCC+CGG | + | chr8_3:62291010-62291029 | None:intergenic | 55.0% | |
GGGTTTCAGGCACAGATGGA+AGG | - | chr8_3:62291084-62291103 | Msa1300620:intron | 55.0% | |
! | AAGCAAGGGCCGATTGGCTG+AGG | - | chr8_3:62289016-62289035 | Msa1300620:CDS | 60.0% |
GCTCGAGGCGGATCTTTCCA+AGG | - | chr8_3:62290624-62290643 | Msa1300620:intron | 60.0% | |
!! | ATGGCCGGGAGTGTTGAAGC+GGG | - | chr8_3:62291003-62291022 | Msa1300620:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_3 | gene | 62288385 | 62291577 | 62288385 | ID=Msa1300620;Name=Msa1300620 |
chr8_3 | mRNA | 62288385 | 62291577 | 62288385 | ID=Msa1300620-mRNA-1;Parent=Msa1300620;Name=Msa1300620-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.62|0.55|0.88|1|1|9|419|415 |
chr8_3 | exon | 62288385 | 62289104 | 62288385 | ID=Msa1300620-mRNA-1:exon:18545;Parent=Msa1300620-mRNA-1 |
chr8_3 | exon | 62289246 | 62289430 | 62289246 | ID=Msa1300620-mRNA-1:exon:18544;Parent=Msa1300620-mRNA-1 |
chr8_3 | exon | 62289616 | 62289735 | 62289616 | ID=Msa1300620-mRNA-1:exon:18543;Parent=Msa1300620-mRNA-1 |
chr8_3 | exon | 62289990 | 62290077 | 62289990 | ID=Msa1300620-mRNA-1:exon:18542;Parent=Msa1300620-mRNA-1 |
chr8_3 | exon | 62290188 | 62290271 | 62290188 | ID=Msa1300620-mRNA-1:exon:18541;Parent=Msa1300620-mRNA-1 |
chr8_3 | exon | 62290536 | 62290642 | 62290536 | ID=Msa1300620-mRNA-1:exon:18540;Parent=Msa1300620-mRNA-1 |
chr8_3 | exon | 62290743 | 62290811 | 62290743 | ID=Msa1300620-mRNA-1:exon:18539;Parent=Msa1300620-mRNA-1 |
chr8_3 | exon | 62290925 | 62291050 | 62290925 | ID=Msa1300620-mRNA-1:exon:18538;Parent=Msa1300620-mRNA-1 |
chr8_3 | exon | 62291410 | 62291577 | 62291410 | ID=Msa1300620-mRNA-1:exon:18537;Parent=Msa1300620-mRNA-1 |
chr8_3 | CDS | 62291410 | 62291577 | 62291410 | ID=Msa1300620-mRNA-1:cds;Parent=Msa1300620-mRNA-1 |
chr8_3 | CDS | 62290925 | 62291050 | 62290925 | ID=Msa1300620-mRNA-1:cds;Parent=Msa1300620-mRNA-1 |
chr8_3 | CDS | 62290743 | 62290811 | 62290743 | ID=Msa1300620-mRNA-1:cds;Parent=Msa1300620-mRNA-1 |
chr8_3 | CDS | 62290536 | 62290642 | 62290536 | ID=Msa1300620-mRNA-1:cds;Parent=Msa1300620-mRNA-1 |
chr8_3 | CDS | 62290188 | 62290271 | 62290188 | ID=Msa1300620-mRNA-1:cds;Parent=Msa1300620-mRNA-1 |
chr8_3 | CDS | 62289990 | 62290077 | 62289990 | ID=Msa1300620-mRNA-1:cds;Parent=Msa1300620-mRNA-1 |
chr8_3 | CDS | 62289616 | 62289735 | 62289616 | ID=Msa1300620-mRNA-1:cds;Parent=Msa1300620-mRNA-1 |
chr8_3 | CDS | 62289246 | 62289430 | 62289246 | ID=Msa1300620-mRNA-1:cds;Parent=Msa1300620-mRNA-1 |
chr8_3 | CDS | 62288804 | 62289104 | 62288804 | ID=Msa1300620-mRNA-1:cds;Parent=Msa1300620-mRNA-1 |
chr8_3 | three_prime_UTR | 62288385 | 62288803 | 62288385 | ID=Msa1300620-mRNA-1:three_prime_utr;Parent=Msa1300620-mRNA-1 |
Gene Sequence |
Protein sequence |