AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1300620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1300620 MtrunA17_Chr4g0066001 97.772 359 8 0 57 415 277 635 0.0 732
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1300620 AT1G30590.1 51.289 388 168 6 31 415 234 603 1.31e-121 366
Msa1300620 AT1G30590.2 51.289 388 168 6 31 415 237 606 1.34e-121 366
Msa1300620 AT1G30590.3 51.289 388 168 6 31 415 237 606 1.34e-121 366
Msa1300620 AT2G34750.1 51.261 357 149 5 62 414 278 613 1.19e-112 343
Msa1300620 AT2G39240.2 47.674 344 150 6 67 410 255 568 2.43e-93 292
Msa1300620 AT2G39240.1 47.674 344 150 6 67 410 255 568 2.43e-93 292

Find 99 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAATGGTGTCTTAGAAAA+TGG 0.144213 8_3:-62288724 Msa1300620:three_prime_UTR
ATCTATGAAATATGGGTTTC+AGG 0.216795 8_3:-62288869 Msa1300620:CDS
ACGCCCAAATCTATGAAATA+TGG 0.220265 8_3:-62288877 Msa1300620:CDS
AAACCCATATTTCATAGATT+TGG 0.238800 8_3:+62288873 None:intergenic
TGCTTAGATGCAACTGATAT+TGG 0.257776 8_3:-62288401 Msa1300620:three_prime_UTR
ATGGAAGAAAATTCCAGTTT+TGG 0.268915 8_3:+62291509 Msa1300630:CDS
CAGCTATTGTAGCATTTGTT+TGG 0.289410 8_3:-62288446 Msa1300620:three_prime_UTR
TAGAAAATGGGCACTCCTAT+TGG 0.306255 8_3:-62288711 Msa1300620:three_prime_UTR
TTGGCTTCTTGTTCCAAAAC+TGG 0.307226 8_3:-62291522 Msa1300620:CDS
AACCCATATTTCATAGATTT+GGG 0.308026 8_3:+62288874 None:intergenic
AGAAAATGGGCACTCCTATT+GGG 0.313507 8_3:-62288710 Msa1300620:three_prime_UTR
TTCAACAAACATGGATCAAA+TGG 0.328326 8_3:+62289258 None:intergenic
AAATGCCCATGGAGCTAATC+TGG 0.332385 8_3:-62289640 Msa1300620:CDS
GTACCACAGAGTTGTTAAAT+AGG 0.350184 8_3:-62291027 Msa1300620:CDS
GCGGATCTTTCCAAGGCTTT+CGG 0.378275 8_3:-62289309 Msa1300620:CDS
CCATGTTTCTTCCAATCCAC+TGG 0.380031 8_3:-62291490 Msa1300620:CDS
GGATATGAATGATTATGATA+TGG 0.391946 8_3:-62288956 Msa1300620:CDS
TAAATTGTTCGTTACCTTCA+AGG 0.395606 8_3:+62289601 None:intergenic
AAGCGGCATTACCTAGTAAT+AGG 0.412363 8_3:+62290524 None:intergenic
AGTAGAGGAATTTCTAAAAC+AGG 0.414435 8_3:-62289391 Msa1300620:CDS
CGCCCAAATCTATGAAATAT+GGG 0.416002 8_3:-62288876 Msa1300620:CDS
AAAATTTACACCACATCCTT+CGG 0.424276 8_3:+62290589 None:intergenic
TATTAATACTTACAAGATAG+TGG 0.427707 8_3:+62288590 None:intergenic
AACTTGCTTGGTTACATTGA+GGG 0.434857 8_3:+62291547 Msa1300630:intron
GAACAATTTGCAAGGCAATC+AGG 0.437527 8_3:-62291005 Msa1300620:CDS
CTTTCGCATGAGATCATTGA+TGG 0.440574 8_3:-62289693 Msa1300620:CDS
ATAAGCTTCACTTTAAGTCT+AGG 0.441192 8_3:+62289665 None:intergenic
AAAACTACAACTGCCCCAAT+AGG 0.447061 8_3:+62288696 None:intergenic
GAAGTTTCTTTCATCTGAGT+TGG 0.464213 8_3:-62290207 Msa1300620:CDS
GTGTTAATCCTCCTATTACT+AGG 0.469232 8_3:-62290535 Msa1300620:intron
AACGAGGAGCTCAGTGATAG+TGG 0.472727 8_3:-62289021 Msa1300620:CDS
TAAGATAGAAATTCAAGTCC+AGG 0.475118 8_3:+62288484 None:intergenic
ACAATGGTGTCTTAGAAAAT+GGG 0.477975 8_3:-62288723 Msa1300620:three_prime_UTR
TGACCATCACCAGCTACTTA+AGG 0.479692 8_3:-62289095 Msa1300620:intron
ATTTATCCCACCGAAAGCCT+TGG 0.486236 8_3:+62289299 None:intergenic
AGAAATTCCTCTACTACGCT+AGG 0.486325 8_3:+62289399 None:intergenic
ATGTTTCCAGATTAGCTCCA+TGG 0.488983 8_3:+62289634 None:intergenic
ACCGTTGCAATCCAGTGGAT+TGG 0.489802 8_3:+62291479 Msa1300630:CDS
ATGTAACCAAGCAAGTTACT+TGG 0.492325 8_3:-62291541 Msa1300620:CDS
GATCTTTCCAAGGCTTTCGG+TGG 0.493557 8_3:-62289306 Msa1300620:CDS
CAAAACATGCAAAGCTGATA+CGG 0.494202 8_3:-62291409 Msa1300620:intron
AAATTGTTCGTTACCTTCAA+GGG 0.496820 8_3:+62289602 None:intergenic
ATGAATGATTATGATATGGC+CGG 0.501292 8_3:-62288952 Msa1300620:CDS
ACATAAATTGAATCCCTTGA+AGG 0.505777 8_3:-62289615 Msa1300620:intron
ATTAATACTTACAAGATAGT+GGG 0.511025 8_3:+62288591 None:intergenic
TTTCATAGATTTGGGCGTGA+TGG 0.514294 8_3:+62288882 None:intergenic
TAAAACATTACAAAATTGAC+AGG 0.517336 8_3:+62288767 None:intergenic
TGTTTCCAGATTAGCTCCAT+GGG 0.520405 8_3:+62289635 None:intergenic
ATAGCAAGTCTTTGACGCCC+TGG 0.523137 8_3:-62288502 Msa1300620:three_prime_UTR
AAGAAGCCAAGTAACTTGCT+TGG 0.524330 8_3:+62291535 Msa1300630:intron
GCTCGAGGCGGATCTTTCCA+AGG 0.526827 8_3:-62289316 Msa1300620:CDS
TCAACAAACATGGATCAAAT+GGG 0.531713 8_3:+62289259 None:intergenic
ATATGGGTTTCAGGCACAGA+TGG 0.533433 8_3:-62288860 Msa1300620:CDS
CCAGTGGATTGGAAGAAACA+TGG 0.533886 8_3:+62291490 Msa1300630:CDS
TAACTTGCTTGGTTACATTG+AGG 0.535877 8_3:+62291546 Msa1300630:intron
ATCTTTCCAAGGCTTTCGGT+GGG 0.536074 8_3:-62289305 Msa1300620:CDS
TAGCATTTGTTTGGAGCTAG+AGG 0.547346 8_3:-62288437 Msa1300620:three_prime_UTR
GGAATTTCTAAAACAGGCAA+AGG 0.549923 8_3:-62289385 Msa1300620:CDS
TAAAACAGGCAAAGGCTGCT+CGG 0.551011 8_3:-62289377 Msa1300620:CDS
CTTGACCAGCGGACAAAATG+TGG 0.555293 8_3:+62289072 None:intergenic
TCTTGAATGCTGTCAAAGCA+AGG 0.555849 8_3:-62290939 Msa1300620:CDS
GGTTTCAGGCACAGATGGAA+GGG 0.558054 8_3:-62288855 Msa1300620:CDS
GGGTTTCAGGCACAGATGGA+AGG 0.558736 8_3:-62288856 Msa1300620:CDS
TTGCCACCGTTGCAATCCAG+TGG 0.561317 8_3:+62291474 Msa1300630:CDS
CTGTCAAAGCAAGGGCCGAT+TGG 0.561772 8_3:-62290930 Msa1300620:CDS
AAGCAAGGGCCGATTGGCTG+AGG 0.562906 8_3:-62290924 Msa1300620:intron
TTGGGAATACCTCAGCCAAT+CGG 0.566052 8_3:+62290915 None:intergenic
TCAGTTACCTCAACAGTGAA+AGG 0.568367 8_3:+62288645 None:intergenic
TTAAATAGGAACAATTTGCA+AGG 0.569913 8_3:-62291013 Msa1300620:CDS
AGCATTTGTTTGGAGCTAGA+GGG 0.572070 8_3:-62288436 Msa1300620:three_prime_UTR
AAGACCCGCTTCAACACTCC+CGG 0.576390 8_3:+62288933 None:intergenic
GATGTTCTATGCATGCGCAT+TGG 0.580066 8_3:-62290615 Msa1300620:CDS
TGAATGATTATGATATGGCC+GGG 0.586844 8_3:-62288951 Msa1300620:CDS
AAGATAGAAATTCAAGTCCA+GGG 0.590326 8_3:+62288485 None:intergenic
ACTGTTGAGGTAACTGAACA+TGG 0.597240 8_3:-62288639 Msa1300620:three_prime_UTR
CGGCATTACCTAGTAATAGG+AGG 0.597341 8_3:+62290527 None:intergenic
ACTATCACTGAGCTCCTCGT+TGG 0.597389 8_3:+62289023 None:intergenic
ATGTTTGCCTAGCGTAGTAG+AGG 0.599342 8_3:-62289406 Msa1300620:CDS
GAAAATGGGCACTCCTATTG+GGG 0.599657 8_3:-62288709 Msa1300620:three_prime_UTR
AATCCACTGGATTGCAACGG+TGG 0.601602 8_3:-62291477 Msa1300620:CDS
ATTTCACTTTCGATCACACA+AGG 0.602906 8_3:+62288375 None:intergenic
TCCAATCCACTGGATTGCAA+CGG 0.606514 8_3:-62291480 Msa1300620:CDS
ATGGCCGGGAGTGTTGAAGC+GGG 0.607938 8_3:-62288937 Msa1300620:CDS
GAAGCTTATCAAAATGCCCA+TGG 0.616331 8_3:-62289651 Msa1300620:CDS
ATACAAGTCAAAATTTGCCC+AGG 0.628013 8_3:-62290742 Msa1300620:intron
CTTGAATGCTGTCAAAGCAA+GGG 0.633580 8_3:-62290938 Msa1300620:CDS
TCGCATGAGATCATTGATGG+AGG 0.634684 8_3:-62289690 Msa1300620:CDS
GTTCCTATTTAACAACTCTG+TGG 0.638060 8_3:+62291024 None:intergenic
GTTTGTTGAAGAAAAGTGAA+AGG 0.640363 8_3:-62289245 Msa1300620:intron
TATGGCCGGGAGTGTTGAAG+CGG 0.646112 8_3:-62288938 Msa1300620:CDS
GCATGCGCATTGGATTCCGA+AGG 0.647857 8_3:-62290605 Msa1300620:CDS
TGGTTGCTAACATCATACAA+AGG 0.652099 8_3:-62290187 Msa1300620:intron
TTAATACTTACAAGATAGTG+GGG 0.654456 8_3:+62288592 None:intergenic
GCATTGGATTCCGAAGGATG+TGG 0.661172 8_3:-62290599 Msa1300620:CDS
AAACATCTCTGTGAGGACCA+TGG 0.662377 8_3:+62290565 None:intergenic
TTTCGATGATTTGCTCGAGG+CGG 0.688171 8_3:-62289328 Msa1300620:CDS
GCAGCTACTTATCAACACAA+TGG 0.714076 8_3:-62288739 Msa1300620:three_prime_UTR
ATGAATCAAACATCTCTGTG+AGG 0.746973 8_3:+62290558 None:intergenic
ATATGATACATATGCCAACG+AGG 0.781154 8_3:-62289037 Msa1300620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTAGTATGTTATAACT+TGG - chr8_3:62288868-62288887 Msa1300620:CDS 15.0%
!! GTTAATTGAATAACTTGATT+AGG - chr8_3:62289129-62289148 Msa1300620:intron 20.0%
!! AAAACACATTAATGTCAATA+GGG + chr8_3:62290040-62290059 None:intergenic 20.0%
!! AAAAACACATTAATGTCAAT+AGG + chr8_3:62290041-62290060 None:intergenic 20.0%
!! TAAAACATTACAAAATTGAC+AGG + chr8_3:62291176-62291195 None:intergenic 20.0%
!!! TGTCAATTTTGTAATGTTTT+AGG - chr8_3:62291175-62291194 Msa1300620:intron 20.0%
!! ATTAATACTTACAAGATAGT+GGG + chr8_3:62291352-62291371 None:intergenic 20.0%
!! TATTAATACTTACAAGATAG+TGG + chr8_3:62291353-62291372 None:intergenic 20.0%
! TTAAATAGGAACAATTTGCA+AGG - chr8_3:62288927-62288946 Msa1300620:CDS 25.0%
! AAACATAATACATGCAAGTT+AGG + chr8_3:62289249-62289268 None:intergenic 25.0%
!!! ATGTTTTAAGAAAAGCACAA+GGG + chr8_3:62289577-62289596 None:intergenic 25.0%
!!! AATGTTTTAAGAAAAGCACA+AGG + chr8_3:62289578-62289597 None:intergenic 25.0%
!! TGCTTTTCTTAAAACATTCT+TGG - chr8_3:62289580-62289599 Msa1300620:intron 25.0%
! TAATTGTCTTGATATGTTTC+AGG - chr8_3:62289669-62289688 Msa1300620:CDS 25.0%
! ATTAATGTCAATAGGGTTAT+GGG + chr8_3:62290033-62290052 None:intergenic 25.0%
! TACTAGACAAAATAAAACGA+GGG + chr8_3:62290095-62290114 None:intergenic 25.0%
! TTACTAGACAAAATAAAACG+AGG + chr8_3:62290096-62290115 None:intergenic 25.0%
!!! ACTTTTAACTTTATTTGACC+TGG - chr8_3:62290150-62290169 Msa1300620:intron 25.0%
!!! GTTGCTCATTTTATTTGTTT+TGG - chr8_3:62290195-62290214 Msa1300620:CDS 25.0%
! ACCTGTCAAAAATTTATATC+AGG + chr8_3:62290514-62290533 None:intergenic 25.0%
! GGATATGAATGATTATGATA+TGG - chr8_3:62290984-62291003 Msa1300620:CDS 25.0%
! AACCCATATTTCATAGATTT+GGG + chr8_3:62291069-62291088 None:intergenic 25.0%
! AAACCCATATTTCATAGATT+TGG + chr8_3:62291070-62291089 None:intergenic 25.0%
! TTAATACTTACAAGATAGTG+GGG + chr8_3:62291351-62291370 None:intergenic 25.0%
! ATGGAAGAAAATTCCAGTTT+TGG + chr8_3:62288434-62288453 None:intergenic 30.0%
!!! GTTTTGAAGGAAATTAGAAG+TGG + chr8_3:62288517-62288536 None:intergenic 30.0%
TATAATCTACAAACTGTGCA+TGG - chr8_3:62289091-62289110 Msa1300620:intron 30.0%
GCATGTATTATGTTTCTTGT+TGG - chr8_3:62289254-62289273 Msa1300620:CDS 30.0%
AAAATTTACACCACATCCTT+CGG + chr8_3:62289354-62289373 None:intergenic 30.0%
! TTAATGGTGGAAATAAGTTG+TGG + chr8_3:62289548-62289567 None:intergenic 30.0%
!!! TGTTTTAAGAAAAGCACAAG+GGG + chr8_3:62289576-62289595 None:intergenic 30.0%
! CAGCTTTATAATTACAGAAC+AGG + chr8_3:62289795-62289814 None:intergenic 30.0%
! CTTTTGTTGAGTTTTCAGAT+TGG - chr8_3:62289867-62289886 Msa1300620:intron 30.0%
TTGACCGCTTTAGTATATAA+TGG - chr8_3:62289989-62290008 Msa1300620:intron 30.0%
CATTAATGTCAATAGGGTTA+TGG + chr8_3:62290034-62290053 None:intergenic 30.0%
! TTTAACTTTATTTGACCTGG+TGG - chr8_3:62290153-62290172 Msa1300620:intron 30.0%
AGCAACAAAATCAAATGTTC+AGG + chr8_3:62290181-62290200 None:intergenic 30.0%
!!! TTATTTGTTTTGGTGTGAGT+AGG - chr8_3:62290205-62290224 Msa1300620:CDS 30.0%
ATAAGCTTCACTTTAAGTCT+AGG + chr8_3:62290278-62290297 None:intergenic 30.0%
ACATAAATTGAATCCCTTGA+AGG - chr8_3:62290325-62290344 Msa1300620:intron 30.0%
AAATTGTTCGTTACCTTCAA+GGG + chr8_3:62290341-62290360 None:intergenic 30.0%
TAAATTGTTCGTTACCTTCA+AGG + chr8_3:62290342-62290361 None:intergenic 30.0%
AACAATTTAGAAAGCTGTCA+TGG - chr8_3:62290353-62290372 Msa1300620:intron 30.0%
AACAAAATGCTATCTCCATT+CGG + chr8_3:62290444-62290463 None:intergenic 30.0%
! GCCTGATATAAATTTTTGAC+AGG - chr8_3:62290510-62290529 Msa1300620:intron 30.0%
!! AGTAGAGGAATTTCTAAAAC+AGG - chr8_3:62290549-62290568 Msa1300620:CDS 30.0%
TCAACAAACATGGATCAAAT+GGG + chr8_3:62290684-62290703 None:intergenic 30.0%
TTCAACAAACATGGATCAAA+TGG + chr8_3:62290685-62290704 None:intergenic 30.0%
!! TCACTTTTCTTCAACAAACA+TGG + chr8_3:62290694-62290713 None:intergenic 30.0%
! GTTTGTTGAAGAAAAGTGAA+AGG - chr8_3:62290695-62290714 Msa1300620:intron 30.0%
! TGCATTTTCTGTCGTTATAA+CGG - chr8_3:62290784-62290803 Msa1300620:CDS 30.0%
! TTTTGTTGACATGAATGCAA+AGG - chr8_3:62290963-62290982 Msa1300620:CDS 30.0%
ATGAATGATTATGATATGGC+CGG - chr8_3:62290988-62291007 Msa1300620:CDS 30.0%
ATCTATGAAATATGGGTTTC+AGG - chr8_3:62291071-62291090 Msa1300620:intron 30.0%
! GTAGATAATCTGATTTTCGA+CGG + chr8_3:62291117-62291136 None:intergenic 30.0%
ACAATGGTGTCTTAGAAAAT+GGG - chr8_3:62291217-62291236 Msa1300620:intron 30.0%
! TATTTTTCCTTTCACTGTTG+AGG - chr8_3:62291288-62291307 Msa1300620:intron 30.0%
! AGTGGGGAATAAATCTTTTA+TGG + chr8_3:62291335-62291354 None:intergenic 30.0%
AAGATAGAAATTCAAGTCCA+GGG + chr8_3:62291458-62291477 Msa1300630:CDS 30.0%
TAAGATAGAAATTCAAGTCC+AGG + chr8_3:62291459-62291478 Msa1300630:CDS 30.0%
! AACTTGCTTGGTTACATTGA+GGG + chr8_3:62288396-62288415 None:intergenic 35.0%
!! TAACTTGCTTGGTTACATTG+AGG + chr8_3:62288397-62288416 None:intergenic 35.0%
ATGTAACCAAGCAAGTTACT+TGG - chr8_3:62288399-62288418 Msa1300620:three_prime_UTR 35.0%
!! ATCAGCTTTGCATGTTTTGA+AGG + chr8_3:62288530-62288549 None:intergenic 35.0%
CAAAACATGCAAAGCTGATA+CGG - chr8_3:62288531-62288550 Msa1300620:three_prime_UTR 35.0%
ATACGGTGCTCTTCATATAA+AGG - chr8_3:62288548-62288567 Msa1300620:three_prime_UTR 35.0%
ATTAGAGGAGATTGAGTACA+TGG + chr8_3:62288578-62288597 None:intergenic 35.0%
TCAATCTCCTCTAATTCCTT+AGG - chr8_3:62288583-62288602 Msa1300620:three_prime_UTR 35.0%
GTACCACAGAGTTGTTAAAT+AGG - chr8_3:62288913-62288932 Msa1300620:CDS 35.0%
GTTCCTATTTAACAACTCTG+TGG + chr8_3:62288919-62288938 None:intergenic 35.0%
GCAAAAAAGTCAGCACAATT+AGG + chr8_3:62288980-62288999 None:intergenic 35.0%
ATACAAGTCAAAATTTGCCC+AGG - chr8_3:62289198-62289217 Msa1300620:intron 35.0%
!! AAGCCAAATAAAGAGTACCT+GGG + chr8_3:62289218-62289237 None:intergenic 35.0%
! ATGTGGTGTAAATTTTGCCA+TGG - chr8_3:62289358-62289377 Msa1300620:CDS 35.0%
ATGAATCAAACATCTCTGTG+AGG + chr8_3:62289385-62289404 None:intergenic 35.0%
GTGTTAATCCTCCTATTACT+AGG - chr8_3:62289405-62289424 Msa1300620:CDS 35.0%
AAATGCATTAAGCAAGGACA+AGG + chr8_3:62289445-62289464 None:intergenic 35.0%
GCTAGTAAATGCATTAAGCA+AGG + chr8_3:62289451-62289470 None:intergenic 35.0%
GGATTAAAAACCACTTATGC+TGG + chr8_3:62289482-62289501 None:intergenic 35.0%
!! TTTTAAGAAAAGCACAAGGG+GGG + chr8_3:62289574-62289593 None:intergenic 35.0%
!!! GTTTTAAGAAAAGCACAAGG+GGG + chr8_3:62289575-62289594 None:intergenic 35.0%
GAAGTTTCTTTCATCTGAGT+TGG - chr8_3:62289733-62289752 Msa1300620:intron 35.0%
TGGTTGCTAACATCATACAA+AGG - chr8_3:62289753-62289772 Msa1300620:intron 35.0%
GCTAACATCATACAAAGGTT+TGG - chr8_3:62289758-62289777 Msa1300620:intron 35.0%
! GAGTTTTCAGATTGGTAGAT+TGG - chr8_3:62289875-62289894 Msa1300620:intron 35.0%
!! AAAAAACTTGGTGTGCTTGT+GGG + chr8_3:62289939-62289958 None:intergenic 35.0%
!! TAAAAAACTTGGTGTGCTTG+TGG + chr8_3:62289940-62289959 None:intergenic 35.0%
GGCAAGCAGAATAAAAAACT+TGG + chr8_3:62289951-62289970 None:intergenic 35.0%
!!! AGTTTTTTATTCTGCTTGCC+AGG - chr8_3:62289951-62289970 Msa1300620:intron 35.0%
ACCGCTTTAGTATATAATGG+TGG - chr8_3:62289992-62290011 Msa1300620:CDS 35.0%
CCCACCATTATATACTAAAG+CGG + chr8_3:62289996-62290015 None:intergenic 35.0%
CCGCTTTAGTATATAATGGT+GGG - chr8_3:62289993-62290012 Msa1300620:CDS 35.0%
! TAGTATATAATGGTGGGAGA+AGG - chr8_3:62289999-62290018 Msa1300620:CDS 35.0%
! AGTATATAATGGTGGGAGAA+GGG - chr8_3:62290000-62290019 Msa1300620:CDS 35.0%
TAAACAGAATGTTCGACTGT+AGG - chr8_3:62290385-62290404 Msa1300620:intron 35.0%
AATGTTCGACTGTAGGATTA+TGG - chr8_3:62290392-62290411 Msa1300620:intron 35.0%
!! GGAATTTCTAAAACAGGCAA+AGG - chr8_3:62290555-62290574 Msa1300620:CDS 35.0%
ATATGATACATATGCCAACG+AGG - chr8_3:62290903-62290922 Msa1300620:intron 35.0%
TGAATGATTATGATATGGCC+GGG - chr8_3:62290989-62291008 Msa1300620:CDS 35.0%
! ATGGACATTTTGTTCAAGTC+AGG + chr8_3:62291042-62291061 None:intergenic 35.0%
ACGCCCAAATCTATGAAATA+TGG - chr8_3:62291063-62291082 Msa1300620:intron 35.0%
CGCCCAAATCTATGAAATAT+GGG - chr8_3:62291064-62291083 Msa1300620:intron 35.0%
CACAATGGTGTCTTAGAAAA+TGG - chr8_3:62291216-62291235 Msa1300620:intron 35.0%
CAGCTATTGTAGCATTTGTT+TGG - chr8_3:62291494-62291513 Msa1300620:CDS 35.0%
TGCTTAGATGCAACTGATAT+TGG - chr8_3:62291539-62291558 Msa1300620:CDS 35.0%
!! AAGAAGCCAAGTAACTTGCT+TGG + chr8_3:62288408-62288427 None:intergenic 40.0%
TTGGCTTCTTGTTCCAAAAC+TGG - chr8_3:62288418-62288437 Msa1300620:three_prime_UTR 40.0%
! GCTGATTCCTAAGGAATTAG+AGG + chr8_3:62288593-62288612 None:intergenic 40.0%
!! TGATGGTTTGCTGATTCCTA+AGG + chr8_3:62288602-62288621 None:intergenic 40.0%
AATCAGCAAACCATCACTCT+CGG - chr8_3:62288606-62288625 Msa1300620:three_prime_UTR 40.0%
CACACAACGATCAGCTATAT+TGG + chr8_3:62288842-62288861 None:intergenic 40.0%
CTCTGTGGTACACTGAAAAA+TGG + chr8_3:62288904-62288923 None:intergenic 40.0%
GAACAATTTGCAAGGCAATC+AGG - chr8_3:62288935-62288954 Msa1300620:CDS 40.0%
TCTTGAATGCTGTCAAAGCA+AGG - chr8_3:62289001-62289020 Msa1300620:CDS 40.0%
CTTGAATGCTGTCAAAGCAA+GGG - chr8_3:62289002-62289021 Msa1300620:CDS 40.0%
TTGCCCAGGTACTCTTTATT+TGG - chr8_3:62289212-62289231 Msa1300620:intron 40.0%
!! GAAGCCAAATAAAGAGTACC+TGG + chr8_3:62289219-62289238 None:intergenic 40.0%
TACATGCAAGTTAGGAACAG+TGG + chr8_3:62289241-62289260 None:intergenic 40.0%
AAGCGGCATTACCTAGTAAT+AGG + chr8_3:62289419-62289438 None:intergenic 40.0%
CACATCATTCATACAACAGG+AGG + chr8_3:62289503-62289522 None:intergenic 40.0%
CTCCTGTTGTATGAATGATG+TGG - chr8_3:62289501-62289520 Msa1300620:intron 40.0%
AGCCACATCATTCATACAAC+AGG + chr8_3:62289506-62289525 None:intergenic 40.0%
! TTTAAGAAAAGCACAAGGGG+GGG + chr8_3:62289573-62289592 None:intergenic 40.0%
! GTATATAATGGTGGGAGAAG+GGG - chr8_3:62290001-62290020 Msa1300620:CDS 40.0%
AATGTCAATAGGGTTATGGG+TGG + chr8_3:62290030-62290049 None:intergenic 40.0%
! CAAAATAAAACGAGGGTGCA+GGG + chr8_3:62290088-62290107 None:intergenic 40.0%
! ACAAAATAAAACGAGGGTGC+AGG + chr8_3:62290089-62290108 None:intergenic 40.0%
CTTTCGCATGAGATCATTGA+TGG - chr8_3:62290247-62290266 Msa1300620:CDS 40.0%
GAAGCTTATCAAAATGCCCA+TGG - chr8_3:62290289-62290308 Msa1300620:intron 40.0%
! TGTTTCCAGATTAGCTCCAT+GGG + chr8_3:62290308-62290327 None:intergenic 40.0%
! ATGTTTCCAGATTAGCTCCA+TGG + chr8_3:62290309-62290328 None:intergenic 40.0%
CTTACAACGTGAAGCTTGTA+TGG - chr8_3:62290473-62290492 Msa1300620:intron 40.0%
AGAAATTCCTCTACTACGCT+AGG + chr8_3:62290544-62290563 None:intergenic 40.0%
!!! CATTTTCGATGATTTGCTCG+AGG - chr8_3:62290609-62290628 Msa1300620:CDS 40.0%
!! TGAAAGGTGTGTAGCTTTTC+TGG - chr8_3:62290711-62290730 Msa1300620:intron 40.0%
!! GAAAGGTGTGTAGCTTTTCT+GGG - chr8_3:62290712-62290731 Msa1300620:intron 40.0%
! AAAATGTGGCCTTAAGTAGC+TGG + chr8_3:62290857-62290876 None:intergenic 40.0%
!!! TAGTTTTGACTCTTGACCAG+CGG + chr8_3:62290882-62290901 None:intergenic 40.0%
TTTCATAGATTTGGGCGTGA+TGG + chr8_3:62291061-62291080 None:intergenic 40.0%
GCAGCTACTTATCAACACAA+TGG - chr8_3:62291201-62291220 Msa1300620:intron 40.0%
TAGAAAATGGGCACTCCTAT+TGG - chr8_3:62291229-62291248 Msa1300620:intron 40.0%
AGAAAATGGGCACTCCTATT+GGG - chr8_3:62291230-62291249 Msa1300620:intron 40.0%
AAAACTACAACTGCCCCAAT+AGG + chr8_3:62291247-62291266 None:intergenic 40.0%
TCAGTTACCTCAACAGTGAA+AGG + chr8_3:62291298-62291317 None:intergenic 40.0%
ACTGTTGAGGTAACTGAACA+TGG - chr8_3:62291301-62291320 Msa1300620:intron 40.0%
! TAGCATTTGTTTGGAGCTAG+AGG - chr8_3:62291503-62291522 Msa1300620:CDS 40.0%
! AGCATTTGTTTGGAGCTAGA+GGG - chr8_3:62291504-62291523 Msa1300620:CDS 40.0%
!! CCAGTGGATTGGAAGAAACA+TGG + chr8_3:62288453-62288472 None:intergenic 45.0%
CCATGTTTCTTCCAATCCAC+TGG - chr8_3:62288450-62288469 Msa1300620:three_prime_UTR 45.0%
TCCAATCCACTGGATTGCAA+CGG - chr8_3:62288460-62288479 Msa1300620:three_prime_UTR 45.0%
TTGGGAATACCTCAGCCAAT+CGG + chr8_3:62289028-62289047 None:intergenic 45.0%
GATGTTCTATGCATGCGCAT+TGG - chr8_3:62289325-62289344 Msa1300620:CDS 45.0%
AAACATCTCTGTGAGGACCA+TGG + chr8_3:62289378-62289397 None:intergenic 45.0%
CGGCATTACCTAGTAATAGG+AGG + chr8_3:62289416-62289435 None:intergenic 45.0%
AAGCAAGGACAAGGTGAAAG+CGG + chr8_3:62289436-62289455 None:intergenic 45.0%
GCATGATAGACCAGCATAAG+TGG - chr8_3:62289469-62289488 Msa1300620:intron 45.0%
CTAAAGCGGTCAAAAGTCGA+TGG + chr8_3:62289982-62290001 None:intergenic 45.0%
TCAAATGTTCAGGATCCACC+AGG + chr8_3:62290171-62290190 None:intergenic 45.0%
TCGCATGAGATCATTGATGG+AGG - chr8_3:62290250-62290269 Msa1300620:CDS 45.0%
AAATGCCCATGGAGCTAATC+TGG - chr8_3:62290300-62290319 Msa1300620:intron 45.0%
ATCTCCATTCGGCAAGATCA+CGG + chr8_3:62290433-62290452 None:intergenic 45.0%
ATGTTTGCCTAGCGTAGTAG+AGG - chr8_3:62290534-62290553 Msa1300620:intron 45.0%
TAAAACAGGCAAAGGCTGCT+CGG - chr8_3:62290563-62290582 Msa1300620:CDS 45.0%
!! TTTCGATGATTTGCTCGAGG+CGG - chr8_3:62290612-62290631 Msa1300620:CDS 45.0%
ATCTTTCCAAGGCTTTCGGT+GGG - chr8_3:62290635-62290654 Msa1300620:intron 45.0%
ATTTATCCCACCGAAAGCCT+TGG + chr8_3:62290644-62290663 None:intergenic 45.0%
TGACCATCACCAGCTACTTA+AGG - chr8_3:62290845-62290864 Msa1300620:intron 45.0%
ATATGGGTTTCAGGCACAGA+TGG - chr8_3:62291080-62291099 Msa1300620:intron 45.0%
GAAAATGGGCACTCCTATTG+GGG - chr8_3:62291231-62291250 Msa1300620:intron 45.0%
!!! TGGGGCAGTTGTAGTTTTGA+TGG - chr8_3:62291249-62291268 Msa1300620:intron 45.0%
ACCGTTGCAATCCAGTGGAT+TGG + chr8_3:62288464-62288483 None:intergenic 50.0%
AATCCACTGGATTGCAACGG+TGG - chr8_3:62288463-62288482 Msa1300620:three_prime_UTR 50.0%
! GCACACAGGAGTGTGTAGTT+GGG + chr8_3:62289046-62289065 None:intergenic 50.0%
! TGCACACAGGAGTGTGTAGT+TGG + chr8_3:62289047-62289066 None:intergenic 50.0%
GTGTGTGTGATGTTGCACAC+AGG + chr8_3:62289060-62289079 None:intergenic 50.0%
GCATTGGATTCCGAAGGATG+TGG - chr8_3:62289341-62289360 Msa1300620:CDS 50.0%
ACAAGGGGGGGATTTAATGG+TGG + chr8_3:62289561-62289580 None:intergenic 50.0%
AGCACAAGGGGGGGATTTAA+TGG + chr8_3:62289564-62289583 None:intergenic 50.0%
CAAAAGTCGATGGACACACC+TGG + chr8_3:62289972-62289991 None:intergenic 50.0%
AAACCCGTGATCTTGCCGAA+TGG - chr8_3:62290426-62290445 Msa1300620:intron 50.0%
TCTCCATTCGGCAAGATCAC+GGG + chr8_3:62290432-62290451 None:intergenic 50.0%
GCGGATCTTTCCAAGGCTTT+CGG - chr8_3:62290631-62290650 Msa1300620:intron 50.0%
GATCTTTCCAAGGCTTTCGG+TGG - chr8_3:62290634-62290653 Msa1300620:intron 50.0%
! AGGTGTGTAGCTTTTCTGGG+AGG - chr8_3:62290715-62290734 Msa1300620:intron 50.0%
TGGTCAGCAGACAGTTGGAA+TGG + chr8_3:62290831-62290850 None:intergenic 50.0%
! TGGCCTTAAGTAGCTGGTGA+TGG + chr8_3:62290851-62290870 None:intergenic 50.0%
! TAAGGCCACATTTTGTCCGC+TGG - chr8_3:62290863-62290882 Msa1300620:intron 50.0%
CTTGACCAGCGGACAAAATG+TGG + chr8_3:62290871-62290890 None:intergenic 50.0%
ACTATCACTGAGCTCCTCGT+TGG + chr8_3:62290920-62290939 None:intergenic 50.0%
AACGAGGAGCTCAGTGATAG+TGG - chr8_3:62290919-62290938 Msa1300620:intron 50.0%
GGTTTCAGGCACAGATGGAA+GGG - chr8_3:62291085-62291104 Msa1300620:intron 50.0%
ATAGCAAGTCTTTGACGCCC+TGG - chr8_3:62291438-62291457 Msa1300620:CDS 50.0%
TTGCCACCGTTGCAATCCAG+TGG + chr8_3:62288469-62288488 None:intergenic 55.0%
CTGTCAAAGCAAGGGCCGAT+TGG - chr8_3:62289010-62289029 Msa1300620:CDS 55.0%
GCATGCGCATTGGATTCCGA+AGG - chr8_3:62289335-62289354 Msa1300620:CDS 55.0%
! AAAACGAGGGTGCAGGGTGA+TGG + chr8_3:62290082-62290101 None:intergenic 55.0%
! GGTGATGGTCAGCAGACAGT+TGG + chr8_3:62290836-62290855 None:intergenic 55.0%
!! TATGGCCGGGAGTGTTGAAG+CGG - chr8_3:62291002-62291021 Msa1300620:CDS 55.0%
AAGACCCGCTTCAACACTCC+CGG + chr8_3:62291010-62291029 None:intergenic 55.0%
GGGTTTCAGGCACAGATGGA+AGG - chr8_3:62291084-62291103 Msa1300620:intron 55.0%
! AAGCAAGGGCCGATTGGCTG+AGG - chr8_3:62289016-62289035 Msa1300620:CDS 60.0%
GCTCGAGGCGGATCTTTCCA+AGG - chr8_3:62290624-62290643 Msa1300620:intron 60.0%
!! ATGGCCGGGAGTGTTGAAGC+GGG - chr8_3:62291003-62291022 Msa1300620:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 62288385 62291577 62288385 ID=Msa1300620;Name=Msa1300620
chr8_3 mRNA 62288385 62291577 62288385 ID=Msa1300620-mRNA-1;Parent=Msa1300620;Name=Msa1300620-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.62|0.55|0.88|1|1|9|419|415
chr8_3 exon 62288385 62289104 62288385 ID=Msa1300620-mRNA-1:exon:18545;Parent=Msa1300620-mRNA-1
chr8_3 exon 62289246 62289430 62289246 ID=Msa1300620-mRNA-1:exon:18544;Parent=Msa1300620-mRNA-1
chr8_3 exon 62289616 62289735 62289616 ID=Msa1300620-mRNA-1:exon:18543;Parent=Msa1300620-mRNA-1
chr8_3 exon 62289990 62290077 62289990 ID=Msa1300620-mRNA-1:exon:18542;Parent=Msa1300620-mRNA-1
chr8_3 exon 62290188 62290271 62290188 ID=Msa1300620-mRNA-1:exon:18541;Parent=Msa1300620-mRNA-1
chr8_3 exon 62290536 62290642 62290536 ID=Msa1300620-mRNA-1:exon:18540;Parent=Msa1300620-mRNA-1
chr8_3 exon 62290743 62290811 62290743 ID=Msa1300620-mRNA-1:exon:18539;Parent=Msa1300620-mRNA-1
chr8_3 exon 62290925 62291050 62290925 ID=Msa1300620-mRNA-1:exon:18538;Parent=Msa1300620-mRNA-1
chr8_3 exon 62291410 62291577 62291410 ID=Msa1300620-mRNA-1:exon:18537;Parent=Msa1300620-mRNA-1
chr8_3 CDS 62291410 62291577 62291410 ID=Msa1300620-mRNA-1:cds;Parent=Msa1300620-mRNA-1
chr8_3 CDS 62290925 62291050 62290925 ID=Msa1300620-mRNA-1:cds;Parent=Msa1300620-mRNA-1
chr8_3 CDS 62290743 62290811 62290743 ID=Msa1300620-mRNA-1:cds;Parent=Msa1300620-mRNA-1
chr8_3 CDS 62290536 62290642 62290536 ID=Msa1300620-mRNA-1:cds;Parent=Msa1300620-mRNA-1
chr8_3 CDS 62290188 62290271 62290188 ID=Msa1300620-mRNA-1:cds;Parent=Msa1300620-mRNA-1
chr8_3 CDS 62289990 62290077 62289990 ID=Msa1300620-mRNA-1:cds;Parent=Msa1300620-mRNA-1
chr8_3 CDS 62289616 62289735 62289616 ID=Msa1300620-mRNA-1:cds;Parent=Msa1300620-mRNA-1
chr8_3 CDS 62289246 62289430 62289246 ID=Msa1300620-mRNA-1:cds;Parent=Msa1300620-mRNA-1
chr8_3 CDS 62288804 62289104 62288804 ID=Msa1300620-mRNA-1:cds;Parent=Msa1300620-mRNA-1
chr8_3 three_prime_UTR 62288385 62288803 62288385 ID=Msa1300620-mRNA-1:three_prime_utr;Parent=Msa1300620-mRNA-1
Gene Sequence

>Msa1300620

ATGCATTGCCCTCAATGTAACCAAGCAAGTTACTTGGCTTCTTGTTCCAAAACTGGAATTTTCTTCCATGTTTCTTCCAATCCACTGGATTGCAACGGTGGCAATGAAAACATGCTAACTGTCGAGCTTCCACTTCTAATTTCCTTCAAAACATGCAAAGCTGATACGTGTACCACAGAGTTGTTAAATAGGAACAATTTGCAAGGCAATCAGGTTGCAGAGAAACTAGATAGCCTAATTGTGCTGACTTTTTTGCATCTTGAATGCTGTCAAAGCAAGGGCCGATTGGCTGAGGTGTTTGATATTTTACTGACGTCATTTAAGAGAACTGTGCTGAATACATACAAGTCAAAATTTGCCCAGTTTGTGATGTTCTATGCATGCGCATTGGATTCCGAAGGATGTGGTGTAAATTTTGCCATGGTCCTCACAGAGATGTTTGATTCATGTGTTAATCCTCCTATTACTAGGATGAGTGCTGTTGCTTATCTTGCTAGTTATTTATCTCGTGCGAAGTTTCTTTCATCTGAGTTGGTTGCTAACATCATACAAAGATTGGTAGATTGGTGTTTTGCATATTGCAAGTTGCATGATTTTGATATGAACCCACAAGCACACCAAGTTTTTTATTCTGCTTGCCAGGCTATCATGTACATTTTGTGCTTTCGCATGAGATCATTGATGGAGGTTCCTAGACTTAAAGTGAAGCTTATCAAAATGCCCATGGAGCTAATCTGGAAACATAAATTGAATCCCTTGAAGGTATGTTTGCCTAGCGTAGTAGAGGAATTTCTAAAACAGGCAAAGGCTGCTCGGCTTTTCATGTCAGCAGAGTTATTCATTTTCGATGATTTGCTCGAGGCGGATCTTTCCAAGGCTTTCGGTGGGATAAATAGACTTGACATGTTCTTCCCATTTGATCCATGTTTGTTGAAGAAAAGTGAAAGCTACTTAAGGCCACATTTTGTCCGCTGGTCAAGAGTCAAAACTACATATGATACATATGCCAACGAGGAGCTCAGTGATAGTGGAAGTGAAGCATCAGACGATGATTTTGTTGACATGAATGCAAAGGATATGAATGATTATGATATGGCCGGGAGTGTTGAAGCGGGTCTTGATTTTGATCCTGACTTGAACAAAATGTCCATCACGCCCAAATCTATGAAATATGGGTTTCAGGCACAGATGGAAGGGAGAATGCCGTCGAAAATCAGATTATCTACTACTGCAGAGTCTTTCGTTTAA

Protein sequence

>Msa1300620

MHCPQCNQASYLASCSKTGIFFHVSSNPLDCNGGNENMLTVELPLLISFKTCKADTCTTELLNRNNLQGNQVAEKLDSLIVLTFLHLECCQSKGRLAEVFDILLTSFKRTVLNTYKSKFAQFVMFYACALDSEGCGVNFAMVLTEMFDSCVNPPITRMSAVAYLASYLSRAKFLSSELVANIIQRLVDWCFAYCKLHDFDMNPQAHQVFYSACQAIMYILCFRMRSLMEVPRLKVKLIKMPMELIWKHKLNPLKVCLPSVVEEFLKQAKAARLFMSAELFIFDDLLEADLSKAFGGINRLDMFFPFDPCLLKKSESYLRPHFVRWSRVKTTYDTYANEELSDSGSEASDDDFVDMNAKDMNDYDMAGSVEAGLDFDPDLNKMSITPKSMKYGFQAQMEGRMPSKIRLSTTAESFV*