AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1235610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1235610 MtrunA17_Chr8g0345651 97.207 358 6 1 1 358 1 354 0.0 713
Msa1235610 MtrunA17_Chr3g0084381 33.562 292 141 7 70 358 50 291 5.08e-43 150
Msa1235610 MtrunA17_Chr1g0176411 80.357 56 11 0 40 95 1 56 3.56e-20 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1235610 AT4G01560.1 73.669 357 79 4 3 358 1 343 0.0 528
Msa1235610 AT1G63780.1 38.776 245 122 6 117 358 73 292 9.07e-46 158

Find 85 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGATGCTCTCTTGATTAT+TGG 0.136869 8_2:-13726050 Msa1235610:intron
CTTCGACTTGTGTCCATTTC+CGG 0.170540 8_2:+13723776 None:intergenic
TGTCTTGGAACTTTGCATTT+TGG 0.220254 8_2:-13723734 Msa1235610:three_prime_UTR
CCCCAAGATCCCGAGTTTAA+AGG 0.228228 8_2:-13725111 Msa1235610:CDS
CCCTTTAAACTCGGGATCTT+GGG 0.260886 8_2:+13725110 None:intergenic
TTCCGTTTCTGTTTCCGTTC+TGG 0.284839 8_2:+13729337 None:intergenic
CAGCTGGAACTTGGTTAATC+TGG 0.296287 8_2:-13723702 Msa1235610:three_prime_UTR
TAAAACAATTGCCCGTCTTC+AGG 0.332177 8_2:-13724860 Msa1235610:intron
GCAAGTGGTGATTAATATCT+TGG 0.337449 8_2:+13726625 None:intergenic
CCCAAGATCCCGAGTTTAAA+GGG 0.343368 8_2:-13725110 Msa1235610:CDS
ATTTGTTTGCAGCTATTTGC+TGG 0.345769 8_2:-13726695 Msa1235610:intron
TGTTGAATATGCAAATAAAA+AGG 0.345995 8_2:-13726206 Msa1235610:CDS
TTTAATATCAGAATTGCTTC+AGG 0.350037 8_2:-13726377 Msa1235610:CDS
GCCCTTTAAACTCGGGATCT+TGG 0.353403 8_2:+13725109 None:intergenic
AAATGAGCAGTAGGTCCTTC+AGG 0.362193 8_2:+13726023 None:intergenic
CTCTTGAAGTAATGTGCATT+TGG 0.364971 8_2:+13726349 None:intergenic
TTTCCACCGATCGCCATTGT+AGG 0.381132 8_2:+13729413 None:intergenic
AACTCAACCTCTTCATCATC+AGG 0.420118 8_2:+13728999 None:intergenic
TGTGTCCCCTTGCAGAATCA+TGG 0.442254 8_2:-13725550 Msa1235610:intron
TAATCATCGAAGGACGGAAC+GGG 0.458251 8_2:+13729306 None:intergenic
ACTGCATTTCAGCTGGAACT+TGG 0.475547 8_2:-13723711 Msa1235610:three_prime_UTR
AGCTCAGGCTGGTGACTGGT+TGG 0.478829 8_2:+13725523 None:intergenic
CACTTGCCGCTTCAATTCTA+CGG 0.479733 8_2:-13726609 Msa1235610:intron
GCTCAGGCTGGTGACTGGTT+GGG 0.480294 8_2:+13725524 None:intergenic
GTCTTCGGCACCTTCTTCTC+CGG 0.480606 8_2:+13729062 None:intergenic
TGTCAAATGTTCCATGCTGC+AGG 0.481553 8_2:+13723948 None:intergenic
ATATGAAGTCTCTCTGGTTG+TGG 0.489756 8_2:+13725070 None:intergenic
AACCAGAACGGAAACAGAAA+CGG 0.491238 8_2:-13729339 Msa1235610:CDS
AGAGAGACTTCATATTCTTC+CGG 0.494821 8_2:-13725062 Msa1235610:CDS
CGAAGACGATTGAAAATACA+AGG 0.499632 8_2:-13729046 Msa1235610:CDS
TACACGTCGCCCTTTAAACT+CGG 0.500125 8_2:+13725101 None:intergenic
CACAAGCTCAGGCTGGTGAC+TGG 0.500662 8_2:+13725519 None:intergenic
CAAGTGGTGATTAATATCTT+GGG 0.501651 8_2:+13726626 None:intergenic
CTTCTTCTGATGCTTAAGCT+TGG 0.508564 8_2:+13729253 None:intergenic
AAGTTGTTCAACACAAGCTC+AGG 0.513960 8_2:+13725508 None:intergenic
GTTGTAGCCTCCGGAGAAGA+AGG 0.514510 8_2:-13729072 Msa1235610:intron
TTGATTATTGGCTTACCTGA+AGG 0.520117 8_2:-13726038 Msa1235610:CDS
TCATATTCTTCCGGCATCAT+CGG 0.521685 8_2:-13725053 Msa1235610:intron
GGAAGAATATGAAGTCTCTC+TGG 0.523080 8_2:+13725064 None:intergenic
CCTACTTGGTTCCCTACGAT+TGG 0.527299 8_2:+13726156 None:intergenic
AGCAATTCTGATATTAAAGC+AGG 0.533676 8_2:+13726382 None:intergenic
CCTTTAAACTCGGGATCTTG+GGG 0.541308 8_2:+13725111 None:intergenic
AACAACTTCACAACACGCCT+AGG 0.543084 8_2:-13725493 Msa1235610:CDS
TCTTTGTTCTTAATCATCGA+AGG 0.545212 8_2:+13729296 None:intergenic
GGAACATTTGACACTAAAAG+TGG 0.547527 8_2:-13723938 Msa1235610:CDS
CTAAAAGTGGAGAATATGAG+TGG 0.547620 8_2:-13723925 Msa1235610:CDS
ATTGACACCAACCTGAAGAC+GGG 0.550528 8_2:+13724849 None:intergenic
CGCGGTGGTTATTCCTACAA+TGG 0.565034 8_2:-13729426 Msa1235610:exon
CAATGGCGATCGGTGGAAAG+AGG 0.566083 8_2:-13729409 Msa1235610:CDS
TTAATCATCGAAGGACGGAA+CGG 0.568387 8_2:+13729305 None:intergenic
GTGAGTTTGAAATGAGCAGT+AGG 0.571962 8_2:+13726014 None:intergenic
AAGTTCCAAGACAAGGTCAC+AGG 0.582687 8_2:+13723744 None:intergenic
TAGGAATAACCACCGCGCGA+GGG 0.584404 8_2:+13729432 None:intergenic
AAGAATTGTACCGATGATGC+CGG 0.586114 8_2:+13725043 None:intergenic
GTTAAAAGAGCTATTGAGCT+CGG 0.586757 8_2:-13729191 Msa1235610:CDS
AATTGACACCAACCTGAAGA+CGG 0.586946 8_2:+13724848 None:intergenic
TGTTCTTAATCATCGAAGGA+CGG 0.587385 8_2:+13729300 None:intergenic
TTGCAAGCCTGATGATGAAG+AGG 0.594460 8_2:-13729006 Msa1235610:intron
GAAGTCTCTCTGGTTGTGGA+AGG 0.594781 8_2:+13725074 None:intergenic
TGTTCAACACAAGCTCAGGC+TGG 0.595435 8_2:+13725512 None:intergenic
AATTCAGTTCAATATTAAAG+CGG 0.596200 8_2:-13726658 Msa1235610:CDS
AGAATATGAGTGGGTTCACA+AGG 0.597660 8_2:-13723915 Msa1235610:intron
GGAAACAGAAACGGAAACGA+AGG 0.598065 8_2:-13729330 Msa1235610:CDS
TTCGGCACCTTCTTCTCCGG+AGG 0.599893 8_2:+13729065 None:intergenic
TAGTTGTACACACCAATCGT+AGG 0.607640 8_2:-13726168 Msa1235610:CDS
GCCTAGGGCATCGTGTTGGA+AGG 0.608210 8_2:-13725477 Msa1235610:intron
CGTAGAATTGAAGCGGCAAG+TGG 0.609118 8_2:+13726610 None:intergenic
GTTATTCCTACAATGGCGAT+CGG 0.609248 8_2:-13729419 Msa1235610:exon
AGCTATTGAGCTCGGCGAAG+AGG 0.611918 8_2:-13729183 Msa1235610:intron
ACCTTCCAACACGATGCCCT+AGG 0.613726 8_2:+13725476 None:intergenic
AACATACCGTAGAATTGAAG+CGG 0.614066 8_2:+13726603 None:intergenic
TTAACTTCAATGTGAAACGA+GGG 0.623098 8_2:+13723975 None:intergenic
ACACGTCGCCCTTTAAACTC+GGG 0.626716 8_2:+13725102 None:intergenic
CGGAAATGGACACAAGTCGA+AGG 0.626913 8_2:-13723775 Msa1235610:CDS
ACAACTTCACAACACGCCTA+GGG 0.637320 8_2:-13725492 Msa1235610:CDS
ACACGCCTAGGGCATCGTGT+TGG 0.640776 8_2:-13725481 Msa1235610:CDS
AGTTGTACACACCAATCGTA+GGG 0.643789 8_2:-13726167 Msa1235610:CDS
ATTCCTACAATGGCGATCGG+TGG 0.646182 8_2:-13729416 Msa1235610:exon
AATGCACATTACTTCAAGAG+AGG 0.646448 8_2:-13726346 Msa1235610:CDS
AAGCGCAACAATGATTCAGA+CGG 0.648847 8_2:-13729386 Msa1235610:CDS
AAATGCAAAGTTCCAAGACA+AGG 0.656551 8_2:+13723737 None:intergenic
TAAAAGTGGAGAATATGAGT+GGG 0.666851 8_2:-13723924 Msa1235610:CDS
AAATGGACACAAGTCGAAGG+AGG 0.670517 8_2:-13723772 Msa1235610:CDS
TTTAACTTCAATGTGAAACG+AGG 0.679925 8_2:+13723974 None:intergenic
GAAGACGATTGAAAATACAA+GGG 0.727075 8_2:-13729045 Msa1235610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTGTTATAATGAAAAA+TGG + chr8_2:13727851-13727870 None:intergenic 10.0%
!!! AGAATATATATTTTGGTTAT+TGG - chr8_2:13724188-13724207 Msa1235610:intron 15.0%
!! TTTAGATAATTAGAAAATGA+TGG - chr8_2:13724399-13724418 Msa1235610:intron 15.0%
!!! GAACTTAATAGAATATTTTT+AGG - chr8_2:13724455-13724474 Msa1235610:intron 15.0%
!!! TGCTGTTTTTTTTTTTTTTT+TGG - chr8_2:13724975-13724994 Msa1235610:intron 15.0%
!!! GCTGTTTTTTTTTTTTTTTT+GGG - chr8_2:13724976-13724995 Msa1235610:intron 15.0%
!!! CTGTTTTTTTTTTTTTTTTG+GGG - chr8_2:13724977-13724996 Msa1235610:intron 15.0%
!!! AATACTTCTAGTTTTTAAAT+GGG + chr8_2:13725176-13725195 None:intergenic 15.0%
!!! AAATACTTCTAGTTTTTAAA+TGG + chr8_2:13725177-13725196 None:intergenic 15.0%
!!! AAATGATGTATTCAATTTTT+TGG - chr8_2:13725204-13725223 Msa1235610:intron 15.0%
!! CAATACTTAAAATATACAAT+GGG - chr8_2:13725566-13725585 Msa1235610:intron 15.0%
!!! AACTATTTTAAGAGAATTTA+AGG - chr8_2:13726030-13726049 Msa1235610:CDS 15.0%
!!! ACTATTTTAAGAGAATTTAA+GGG - chr8_2:13726031-13726050 Msa1235610:CDS 15.0%
!!! TGTTATTTAAAGATATCTTA+GGG - chr8_2:13726091-13726110 Msa1235610:intron 15.0%
!!! TTATTTCCTTTAAGATTAAA+GGG + chr8_2:13726215-13726234 None:intergenic 15.0%
!! GTTGTTTATAAATATAACAA+TGG - chr8_2:13727143-13727162 Msa1235610:intron 15.0%
!!! TGACTTTTTTTTTTTTTTAC+AGG + chr8_2:13727301-13727320 None:intergenic 15.0%
!! AAAAACAAAATCAACAAATA+AGG + chr8_2:13727940-13727959 None:intergenic 15.0%
!! ACATGAAAAAAAATTCATTA+AGG - chr8_2:13728901-13728920 Msa1235610:intron 15.0%
!! TGATAATAATACATAAAATG+CGG + chr8_2:13729049-13729068 None:intergenic 15.0%
!! CCAATCATACATAAAAATTT+AGG + chr8_2:13724144-13724163 None:intergenic 20.0%
!!! CCTAAATTTTTATGTATGAT+TGG - chr8_2:13724141-13724160 Msa1235610:intron 20.0%
!!! TGAGTGTAGAATATATATTT+TGG - chr8_2:13724181-13724200 Msa1235610:intron 20.0%
!! AAAAAATAAACTATGATGCT+AGG - chr8_2:13724260-13724279 Msa1235610:intron 20.0%
!! AGATTTGGCTATTATAAAAT+AGG - chr8_2:13724428-13724447 Msa1235610:intron 20.0%
!!! ATATTTTTAGGTTTCAAAGT+TGG - chr8_2:13724467-13724486 Msa1235610:intron 20.0%
!!! TGTTAGGATTTTATTATCAA+AGG - chr8_2:13724511-13724530 Msa1235610:intron 20.0%
!!! GTTAGGATTTTATTATCAAA+GGG - chr8_2:13724512-13724531 Msa1235610:intron 20.0%
!! ATCCATTCATTTATTTGAAT+AGG - chr8_2:13724847-13724866 Msa1235610:intron 20.0%
!!! AAAAACTAGAAGTATTTTGT+TGG - chr8_2:13725180-13725199 Msa1235610:intron 20.0%
!!! AATTTCGATCATTGATTTTT+GGG - chr8_2:13725354-13725373 Msa1235610:intron 20.0%
!!! GAGATTAGAAATTTTTTCAA+CGG + chr8_2:13725482-13725501 None:intergenic 20.0%
!! GCAATACTTAAAATATACAA+TGG - chr8_2:13725565-13725584 Msa1235610:intron 20.0%
!!! AAAATATACAATGGGTTTTT+TGG - chr8_2:13725574-13725593 Msa1235610:intron 20.0%
!!! AAATATACAATGGGTTTTTT+GGG - chr8_2:13725575-13725594 Msa1235610:intron 20.0%
!!! TTTTTTTGCAATCACTTATT+TGG - chr8_2:13725711-13725730 Msa1235610:intron 20.0%
!!! TTTTTTGCAATCACTTATTT+GGG - chr8_2:13725712-13725731 Msa1235610:intron 20.0%
!! AGAGTATAAACCTATTAATT+TGG + chr8_2:13725754-13725773 None:intergenic 20.0%
!!! ATTATTTTCAAGGCTTTTAA+AGG + chr8_2:13725845-13725864 None:intergenic 20.0%
!!! AACAACATCATTATTTTCAA+TGG + chr8_2:13725969-13725988 None:intergenic 20.0%
!! GAAAATAATGATGTTGTTAA+CGG - chr8_2:13725971-13725990 Msa1235610:intron 20.0%
!! ATGTCTATTATAAAACTAGA+GGG - chr8_2:13726060-13726079 Msa1235610:intron 20.0%
!!! GTGTTATTTAAAGATATCTT+AGG - chr8_2:13726090-13726109 Msa1235610:intron 20.0%
!! GTTATTTAAAGATATCTTAG+GGG - chr8_2:13726092-13726111 Msa1235610:intron 20.0%
!!! GTTATTTCCTTTAAGATTAA+AGG + chr8_2:13726216-13726235 None:intergenic 20.0%
!! AACTCTAGATTATATAAACT+AGG - chr8_2:13726233-13726252 Msa1235610:intron 20.0%
!! ACTCTAGATTATATAAACTA+GGG - chr8_2:13726234-13726253 Msa1235610:intron 20.0%
!!! TTAGTCAACAGAATTTATTT+TGG + chr8_2:13726374-13726393 None:intergenic 20.0%
!! AATTCAGTTCAATATTAAAG+CGG - chr8_2:13726437-13726456 Msa1235610:intron 20.0%
!! TATGATTTAAAAAAGGTGAT+GGG - chr8_2:13726776-13726795 Msa1235610:intron 20.0%
!! TGTTGAATATGCAAATAAAA+AGG - chr8_2:13726889-13726908 Msa1235610:intron 20.0%
!!! ACAATCTTTAAAATATGAGT+AGG + chr8_2:13726985-13727004 None:intergenic 20.0%
!!! CTCAATCTTTTTAATTTCTT+TGG + chr8_2:13728165-13728184 None:intergenic 20.0%
!! ATTAAAAAGATTGAGTCTAA+AGG - chr8_2:13728170-13728189 Msa1235610:intron 20.0%
!! GAAAAAAAATTCATTAAGGA+TGG - chr8_2:13728905-13728924 Msa1235610:intron 20.0%
!! TATTTACCTTAATTGATCAA+TGG - chr8_2:13728954-13728973 Msa1235610:intron 20.0%
!!! AATATTTAAAACAGCAATAC+TGG + chr8_2:13729221-13729240 None:intergenic 20.0%
!!! CATTTCTCTTATATTTCTAA+CGG - chr8_2:13729256-13729275 Msa1235610:CDS 20.0%
! TAATTAGAAAATGATGGTAG+CGG - chr8_2:13724405-13724424 Msa1235610:intron 25.0%
! CACCTATTCAAATAAATGAA+TGG + chr8_2:13724852-13724871 None:intergenic 25.0%
!!! CAATTTCGATCATTGATTTT+TGG - chr8_2:13725353-13725372 Msa1235610:intron 25.0%
!! TCACTTATTTGGGATAAAAA+TGG - chr8_2:13725722-13725741 Msa1235610:intron 25.0%
! ATGGACAAAACCAAATTAAT+AGG - chr8_2:13725741-13725760 Msa1235610:intron 25.0%
! AAAAGCCTTGAAAATAATGA+TGG - chr8_2:13725847-13725866 Msa1235610:intron 25.0%
!!! ATTTTAAGAGAATTTAAGGG+AGG - chr8_2:13726034-13726053 Msa1235610:CDS 25.0%
! CATGTCTATTATAAAACTAG+AGG - chr8_2:13726059-13726078 Msa1235610:intron 25.0%
! TGTCTATTATAAAACTAGAG+GGG - chr8_2:13726061-13726080 Msa1235610:intron 25.0%
!! TACTCCTAAAAGTGTAAAAT+AGG + chr8_2:13726607-13726626 None:intergenic 25.0%
! TTTAATATCAGAATTGCTTC+AGG - chr8_2:13726718-13726737 Msa1235610:intron 25.0%
! AGGAACCTATGATTTAAAAA+AGG - chr8_2:13726769-13726788 Msa1235610:intron 25.0%
!!! CATCACCTTTTTTAAATCAT+AGG + chr8_2:13726777-13726796 None:intergenic 25.0%
! CTATGATTTAAAAAAGGTGA+TGG - chr8_2:13726775-13726794 Msa1235610:intron 25.0%
! CTCTTATCTAAGAATTTAAG+TGG + chr8_2:13727248-13727267 None:intergenic 25.0%
! AAAGTGGAATTCATCTAAAT+AGG + chr8_2:13727423-13727442 None:intergenic 25.0%
! AACAAAGTCTAATCAAAAAG+TGG + chr8_2:13727439-13727458 None:intergenic 25.0%
!! TTTGATTAGACTTTGTTATC+TGG - chr8_2:13727442-13727461 Msa1235610:intron 25.0%
! CTAAGCAGTAAGTATTATTA+TGG - chr8_2:13727773-13727792 Msa1235610:intron 25.0%
! ATTATAACAAATATCTCCTC+TGG - chr8_2:13727857-13727876 Msa1235610:intron 25.0%
!! TGCCATTTGTTTCAAATTAT+TGG - chr8_2:13728089-13728108 Msa1235610:intron 25.0%
!! CACCAATAATTTGAAACAAA+TGG + chr8_2:13728094-13728113 None:intergenic 25.0%
!! AATTTACATTGACTAGTCAA+TGG + chr8_2:13728314-13728333 None:intergenic 25.0%
!!! TTTTCATTGCTTTTATTGTG+TGG - chr8_2:13728370-13728389 Msa1235610:intron 25.0%
! ACGCAAGTTATATATAATAG+TGG - chr8_2:13728397-13728416 Msa1235610:intron 25.0%
!!! AATTCACTTTAAGAGAGTTT+TGG + chr8_2:13728696-13728715 None:intergenic 25.0%
! TAACTTAATGACTAACAAAG+GGG + chr8_2:13728744-13728763 None:intergenic 25.0%
! GTAACTTAATGACTAACAAA+GGG + chr8_2:13728745-13728764 None:intergenic 25.0%
! TAGAAGAATACTTAAATCCT+TGG + chr8_2:13728993-13729012 None:intergenic 25.0%
! TAATTTCCTCTTAAAAATGC+AGG - chr8_2:13729090-13729109 Msa1235610:intron 25.0%
!! TGTTGTTATCTTGAAGTTTT+TGG - chr8_2:13729420-13729439 Msa1235610:exon 25.0%
! TTTTCGAAGAGAAGAAGAAA+AGG + chr8_2:13723642-13723661 None:intergenic 30.0%
TCTTTGTTCTTAATCATCGA+AGG + chr8_2:13723802-13723821 None:intergenic 30.0%
! CTTGTATTTTCAATCGTCTT+CGG + chr8_2:13724051-13724070 None:intergenic 30.0%
GAAGACGATTGAAAATACAA+GGG - chr8_2:13724050-13724069 Msa1235610:intron 30.0%
TACACTGTGAGATTTGAATT+AGG - chr8_2:13724226-13724245 Msa1235610:intron 30.0%
!! AAGGAAACTTAGTTTGTAGT+TGG - chr8_2:13724567-13724586 Msa1235610:intron 30.0%
!!! TTTAGTCATGCGTTTTGATT+TGG - chr8_2:13724619-13724638 Msa1235610:intron 30.0%
! ATATGACAATTTGGGTTCTT+TGG - chr8_2:13724700-13724719 Msa1235610:intron 30.0%
! CAACTTGTTTGTTCTATGAA+TGG - chr8_2:13724817-13724836 Msa1235610:intron 30.0%
GTTTGTTCTATGAATGGTAT+TGG - chr8_2:13724823-13724842 Msa1235610:intron 30.0%
CAACAGAAATTCTAAACAAC+AGG + chr8_2:13725084-13725103 None:intergenic 30.0%
GACATTTACACAAAGCTTAA+GGG + chr8_2:13725396-13725415 None:intergenic 30.0%
TGACATTTACACAAAGCTTA+AGG + chr8_2:13725397-13725416 None:intergenic 30.0%
TTGTCATGTGAGAAAATAGA+GGG + chr8_2:13725428-13725447 None:intergenic 30.0%
TTTGTCATGTGAGAAAATAG+AGG + chr8_2:13725429-13725448 None:intergenic 30.0%
AGTATTGCAATATGCTTTCA+TGG + chr8_2:13725553-13725572 None:intergenic 30.0%
AAATGATCTGAATCAACATG+TGG + chr8_2:13725676-13725695 None:intergenic 30.0%
AATAGGTTTATACTCTGCAA+CGG - chr8_2:13725758-13725777 Msa1235610:intron 30.0%
! CCATTGTTGTAAACTTTTCA+AGG + chr8_2:13725900-13725919 None:intergenic 30.0%
CCTTGAAAAGTTTACAACAA+TGG - chr8_2:13725897-13725916 Msa1235610:intron 30.0%
ACAACAATGGCAGTAATATT+TGG - chr8_2:13725910-13725929 Msa1235610:intron 30.0%
! AGTAATATTTGGTGGTTTAG+TGG - chr8_2:13725921-13725940 Msa1235610:intron 30.0%
TTAACAGTGTTAAGTCACAA+AGG - chr8_2:13725998-13726017 Msa1235610:CDS 30.0%
TAACAGTGTTAAGTCACAAA+GGG - chr8_2:13725999-13726018 Msa1235610:CDS 30.0%
GTCTATTATAAAACTAGAGG+GGG - chr8_2:13726062-13726081 Msa1235610:intron 30.0%
ATTTAAAGATATCTTAGGGG+AGG - chr8_2:13726095-13726114 Msa1235610:intron 30.0%
GCTATTCAACGAAAAATCAA+GGG + chr8_2:13726134-13726153 None:intergenic 30.0%
AGCTATTCAACGAAAAATCA+AGG + chr8_2:13726135-13726154 None:intergenic 30.0%
!! TCCTTTAAGATTAAAGGGAT+GGG + chr8_2:13726210-13726229 None:intergenic 30.0%
!! TTCCTTTAAGATTAAAGGGA+TGG + chr8_2:13726211-13726230 None:intergenic 30.0%
ACGAAACAAGAGTAATTCTT+GGG - chr8_2:13726266-13726285 Msa1235610:intron 30.0%
CAAGTGGTGATTAATATCTT+GGG + chr8_2:13726472-13726491 None:intergenic 30.0%
AAATCAAATCAAGAAGGCAA+GGG + chr8_2:13726579-13726598 None:intergenic 30.0%
! GCATCCTATTTTACACTTTT+AGG - chr8_2:13726600-13726619 Msa1235610:intron 30.0%
AGCAATTCTGATATTAAAGC+AGG + chr8_2:13726716-13726735 None:intergenic 30.0%
! TGTTTTACGCAAGGATATTA+AGG - chr8_2:13727110-13727129 Msa1235610:intron 30.0%
TGGCACTAACAATATAAGAA+AGG + chr8_2:13727831-13727850 None:intergenic 30.0%
! ACAGTGTTTCTATGTAATGA+TGG - chr8_2:13727883-13727902 Msa1235610:intron 30.0%
! CAGTGTTTCTATGTAATGAT+GGG - chr8_2:13727884-13727903 Msa1235610:intron 30.0%
AATATACCTAAGAACGTGAT+TGG + chr8_2:13728135-13728154 None:intergenic 30.0%
! CAAATTATTGACTAGTAGTC+TGG - chr8_2:13728451-13728470 Msa1235610:intron 30.0%
ATTGTCTACTCATGTGATTT+AGG - chr8_2:13728482-13728501 Msa1235610:intron 30.0%
AGTAGTAGTAAAAGGAAGAT+AGG - chr8_2:13728533-13728552 Msa1235610:intron 30.0%
CGTAACTTAATGACTAACAA+AGG + chr8_2:13728746-13728765 None:intergenic 30.0%
CTATTTATTAAGTGCATGTG+AGG + chr8_2:13728798-13728817 None:intergenic 30.0%
CTCACATGCACTTAATAAAT+AGG - chr8_2:13728796-13728815 Msa1235610:intron 30.0%
ACATGCACTTAATAAATAGG+AGG - chr8_2:13728799-13728818 Msa1235610:intron 30.0%
AGATTGCCATTGATCAATTA+AGG + chr8_2:13728963-13728982 None:intergenic 30.0%
AATACTAAGCCAAAACATGA+AGG + chr8_2:13729023-13729042 None:intergenic 30.0%
! AATTATTGCTGAGGCAATTT+TGG + chr8_2:13729075-13729094 None:intergenic 30.0%
TTAAGAGGAAATTATTGCTG+AGG + chr8_2:13729084-13729103 None:intergenic 30.0%
TTAACTTCAATGTGAAACGA+GGG + chr8_2:13729123-13729142 None:intergenic 30.0%
! TTTAACTTCAATGTGAAACG+AGG + chr8_2:13729124-13729143 None:intergenic 30.0%
TAAAAGTGGAGAATATGAGT+GGG - chr8_2:13729171-13729190 Msa1235610:intron 30.0%
TTCCAAGAGAAAAACCAGAA+CGG - chr8_2:13723744-13723763 Msa1235610:exon 35.0%
TGTTCTTAATCATCGAAGGA+CGG + chr8_2:13723798-13723817 None:intergenic 35.0%
GTTAAAAGAGCTATTGAGCT+CGG - chr8_2:13723904-13723923 Msa1235610:intron 35.0%
CGAAGACGATTGAAAATACA+AGG - chr8_2:13724049-13724068 Msa1235610:intron 35.0%
TTCCTTAACTAGTGCTCTAA+GGG + chr8_2:13724553-13724572 None:intergenic 35.0%
TTTCCTTAACTAGTGCTCTA+AGG + chr8_2:13724554-13724573 None:intergenic 35.0%
!! AACTTAGTTTGTAGTTGGCT+CGG - chr8_2:13724572-13724591 Msa1235610:intron 35.0%
AAACGCATGACTAAATTGTG+TGG + chr8_2:13724614-13724633 None:intergenic 35.0%
! AGAAAATTCGAAAGGGGTTT+TGG - chr8_2:13724667-13724686 Msa1235610:intron 35.0%
TCGTATGGCATATGACAATT+TGG - chr8_2:13724691-13724710 Msa1235610:intron 35.0%
CGTATGGCATATGACAATTT+GGG - chr8_2:13724692-13724711 Msa1235610:intron 35.0%
! GATAGTTGATGCTAATGAGA+TGG - chr8_2:13724759-13724778 Msa1235610:intron 35.0%
! TTTTTCTGCTTTGTGTGTGT+TGG - chr8_2:13725004-13725023 Msa1235610:intron 35.0%
ATTTACACAAAGCTTAAGGG+AGG + chr8_2:13725393-13725412 None:intergenic 35.0%
TGTCATGTGAGAAAATAGAG+GGG + chr8_2:13725427-13725446 None:intergenic 35.0%
!!! GAGTGTGGGTATCATTTTTT+AGG + chr8_2:13725523-13725542 None:intergenic 35.0%
ATTGCAATATGCTTTCATGG+TGG + chr8_2:13725550-13725569 None:intergenic 35.0%
ATCTGAATCAACATGTGGAT+AGG + chr8_2:13725671-13725690 None:intergenic 35.0%
! TATACTCTGCAACGGTTTTA+TGG - chr8_2:13725766-13725785 Msa1235610:intron 35.0%
!! ATACTCTGCAACGGTTTTAT+GGG - chr8_2:13725767-13725786 Msa1235610:intron 35.0%
ACAATGGCAGTAATATTTGG+TGG - chr8_2:13725913-13725932 Msa1235610:intron 35.0%
! AATATTTGGTGGTTTAGTGG+AGG - chr8_2:13725924-13725943 Msa1235610:intron 35.0%
!! AACTTTAGAGTGTAAAGTGC+AGG + chr8_2:13726161-13726180 None:intergenic 35.0%
ACCCATCCCTTTAATCTTAA+AGG - chr8_2:13726206-13726225 Msa1235610:CDS 35.0%
! AGAATTACTCTTGTTTCGTC+TGG + chr8_2:13726265-13726284 None:intergenic 35.0%
GACGAAACAAGAGTAATTCT+TGG - chr8_2:13726265-13726284 Msa1235610:intron 35.0%
ATTTGTTTGCAGCTATTTGC+TGG - chr8_2:13726400-13726419 Msa1235610:intron 35.0%
GCAAGTGGTGATTAATATCT+TGG + chr8_2:13726473-13726492 None:intergenic 35.0%
AACATACCGTAGAATTGAAG+CGG + chr8_2:13726495-13726514 None:intergenic 35.0%
GAATACAAACAACAGACTAG+AGG + chr8_2:13726519-13726538 None:intergenic 35.0%
CAAATCAAATCAAGAAGGCA+AGG + chr8_2:13726580-13726599 None:intergenic 35.0%
! CTTGCCTTCTTGATTTGATT+TGG - chr8_2:13726578-13726597 Msa1235610:intron 35.0%
GATGCCAAATCAAATCAAGA+AGG + chr8_2:13726585-13726604 None:intergenic 35.0%
GTCAAAAATCAACAGACAGA+TGG + chr8_2:13726676-13726695 None:intergenic 35.0%
!!! ATTTTTGACTTCATCTGCAG+AGG - chr8_2:13726687-13726706 Msa1235610:intron 35.0%
!!! TTTTTGACTTCATCTGCAGA+GGG - chr8_2:13726688-13726707 Msa1235610:intron 35.0%
CTCTTGAAGTAATGTGCATT+TGG + chr8_2:13726749-13726768 None:intergenic 35.0%
AATGCACATTACTTCAAGAG+AGG - chr8_2:13726749-13726768 Msa1235610:intron 35.0%
TGAGTAGGATCTTTACTCAA+AGG + chr8_2:13726970-13726989 None:intergenic 35.0%
!! CAAGAGAGCATCTGAAAAAT+AGG + chr8_2:13727040-13727059 None:intergenic 35.0%
TCAGATGCTCTCTTGATTAT+TGG - chr8_2:13727045-13727064 Msa1235610:intron 35.0%
!! TTGATTATTGGCTTACCTGA+AGG - chr8_2:13727057-13727076 Msa1235610:intron 35.0%
!!! CACAAATCTTGTTTTACGCA+AGG - chr8_2:13727101-13727120 Msa1235610:intron 35.0%
AAATAGGTAAGACAAAGTGC+AGG + chr8_2:13727407-13727426 None:intergenic 35.0%
TGTTATCTGGAAAGATCAAG+TGG - chr8_2:13727455-13727474 Msa1235610:intron 35.0%
AGAGAGACTTCATATTCTTC+CGG - chr8_2:13728033-13728052 Msa1235610:intron 35.0%
GTCTAAAGGTAAAAATGACG+AGG - chr8_2:13728184-13728203 Msa1235610:intron 35.0%
AAAGGTAAAAATGACGAGGA+TGG - chr8_2:13728188-13728207 Msa1235610:intron 35.0%
CCATTGAGTTTGAAAATGGA+AGG + chr8_2:13728291-13728310 None:intergenic 35.0%
! CCTTCCATTTTCAAACTCAA+TGG - chr8_2:13728288-13728307 Msa1235610:intron 35.0%
ATGGCCATTGAGTTTGAAAA+TGG + chr8_2:13728295-13728314 None:intergenic 35.0%
GCGTTGAAAGTAGTAGTAAA+AGG - chr8_2:13728525-13728544 Msa1235610:intron 35.0%
!!! TTTTGGAATTTCAGAGTTGC+AGG + chr8_2:13728679-13728698 None:intergenic 35.0%
ATGGCAATCTAATGTTACCA+AGG - chr8_2:13728973-13728992 Msa1235610:intron 35.0%
! TACCTGATTCCTTCATGTTT+TGG - chr8_2:13729011-13729030 Msa1235610:CDS 35.0%
CTCTTAAAAATGCAGGAATG+CGG - chr8_2:13729097-13729116 Msa1235610:intron 35.0%
GGAACATTTGACACTAAAAG+TGG - chr8_2:13729157-13729176 Msa1235610:intron 35.0%
CTAAAAGTGGAGAATATGAG+TGG - chr8_2:13729170-13729189 Msa1235610:intron 35.0%
AAATGCAAAGTTCCAAGACA+AGG + chr8_2:13729361-13729380 None:intergenic 35.0%
! TGTCTTGGAACTTTGCATTT+TGG - chr8_2:13729361-13729380 Msa1235610:CDS 35.0%
GTTATTCCTACAATGGCGAT+CGG - chr8_2:13723676-13723695 Msa1235610:three_prime_UTR 40.0%
AAGCGCAACAATGATTCAGA+CGG - chr8_2:13723709-13723728 Msa1235610:three_prime_UTR 40.0%
!!! TTCCGTTCTGGTTTTTCTCT+TGG + chr8_2:13723749-13723768 None:intergenic 40.0%
AACCAGAACGGAAACAGAAA+CGG - chr8_2:13723756-13723775 Msa1235610:exon 40.0%
TTAATCATCGAAGGACGGAA+CGG + chr8_2:13723793-13723812 None:intergenic 40.0%
CTTCTTCTGATGCTTAAGCT+TGG + chr8_2:13723845-13723864 None:intergenic 40.0%
AACTCAACCTCTTCATCATC+AGG + chr8_2:13724099-13724118 None:intergenic 40.0%
! ATCAGCTTCAAGTTTGTCAG+TGG + chr8_2:13724371-13724390 None:intergenic 40.0%
!! AAATGATGGTAGCGGAGATT+TGG - chr8_2:13724413-13724432 Msa1235610:intron 40.0%
CAACAGTTAGAGCAACTGTT+AGG - chr8_2:13724495-13724514 Msa1235610:intron 40.0%
AGCCGAGAAGAAAATTCGAA+AGG - chr8_2:13724659-13724678 Msa1235610:intron 40.0%
GCCGAGAAGAAAATTCGAAA+GGG - chr8_2:13724660-13724679 Msa1235610:intron 40.0%
! CCCCTTTCGAATTTTCTTCT+CGG + chr8_2:13724664-13724683 None:intergenic 40.0%
CCGAGAAGAAAATTCGAAAG+GGG - chr8_2:13724661-13724680 Msa1235610:intron 40.0%
GCTATGATGACTCATGCAAA+CGG + chr8_2:13724884-13724903 None:intergenic 40.0%
! CATCATGTTTTCTTGCCTTC+TGG - chr8_2:13724927-13724946 Msa1235610:CDS 40.0%
CTTTGTGTGTGTTGGATTGT+TGG - chr8_2:13725012-13725031 Msa1235610:intron 40.0%
TCATGTTAACATGTGCCCTA+CGG + chr8_2:13725274-13725293 None:intergenic 40.0%
AGAAACACACCAGTAAGGAA+TGG + chr8_2:13725614-13725633 None:intergenic 40.0%
TCACTAGAAACACACCAGTA+AGG + chr8_2:13725619-13725638 None:intergenic 40.0%
AATCAACATGTGGATAGGAG+CGG + chr8_2:13725666-13725685 None:intergenic 40.0%
!! TACTCTGCAACGGTTTTATG+GGG - chr8_2:13725768-13725787 Msa1235610:intron 40.0%
! CGCTGCCATCATTATTTTCA+AGG + chr8_2:13725855-13725874 None:intergenic 40.0%
!! GTAGGAGAACTTTAGAGTGT+AGG + chr8_2:13726168-13726187 None:intergenic 40.0%
AAGATTAAAGGGATGGGTGT+AGG + chr8_2:13726204-13726223 None:intergenic 40.0%
TTTAGGAGTAAGAGTCGAGT+TGG - chr8_2:13726617-13726636 Msa1235610:CDS 40.0%
!!! TTTTGACTTCATCTGCAGAG+GGG - chr8_2:13726689-13726708 Msa1235610:intron 40.0%
!!! CTGACTGCTTTTTATCCACA+CGG + chr8_2:13726821-13726840 None:intergenic 40.0%
TAGTTGTACACACCAATCGT+AGG - chr8_2:13726927-13726946 Msa1235610:intron 40.0%
AGTTGTACACACCAATCGTA+GGG - chr8_2:13726928-13726947 Msa1235610:intron 40.0%
GCATCTGAAAAATAGGAGCA+AGG + chr8_2:13727033-13727052 None:intergenic 40.0%
! GTGAGTTTGAAATGAGCAGT+AGG + chr8_2:13727084-13727103 None:intergenic 40.0%
TCTGATCTCCTCATTGATGT+CGG - chr8_2:13727178-13727197 Msa1235610:intron 40.0%
AATGTACACCGACATCAATG+AGG + chr8_2:13727189-13727208 None:intergenic 40.0%
AAGTTGTTCAACACAAGCTC+AGG + chr8_2:13727590-13727609 None:intergenic 40.0%
AAAAGTGATATGCCCATGCT+AGG - chr8_2:13727716-13727735 Msa1235610:intron 40.0%
ATTTCAGTCAGACCTAGCAT+GGG + chr8_2:13727731-13727750 None:intergenic 40.0%
TATTTCAGTCAGACCTAGCA+TGG + chr8_2:13727732-13727751 None:intergenic 40.0%
CTGCTTAGAAAACAACTGAC+AGG + chr8_2:13727761-13727780 None:intergenic 40.0%
ATAGAAACACTGTGAACCAG+AGG + chr8_2:13727876-13727895 None:intergenic 40.0%
ATATGAAGTCTCTCTGGTTG+TGG + chr8_2:13728028-13728047 None:intergenic 40.0%
GGAAGAATATGAAGTCTCTC+TGG + chr8_2:13728034-13728053 None:intergenic 40.0%
TCATATTCTTCCGGCATCAT+CGG - chr8_2:13728042-13728061 Msa1235610:intron 40.0%
! AAGAATTGTACCGATGATGC+CGG + chr8_2:13728055-13728074 None:intergenic 40.0%
ATGTGTCCAATCACGTTCTT+AGG - chr8_2:13728126-13728145 Msa1235610:intron 40.0%
!! GAAGACGGGCAATTGTTTTA+TGG + chr8_2:13728235-13728254 None:intergenic 40.0%
TAAAACAATTGCCCGTCTTC+AGG - chr8_2:13728235-13728254 Msa1235610:intron 40.0%
AATTGACACCAACCTGAAGA+CGG + chr8_2:13728250-13728269 None:intergenic 40.0%
GAAAGAGGTTTGCAATGCAT+TGG + chr8_2:13728591-13728610 None:intergenic 40.0%
CTTAATGACTAACAAAGGGG+AGG + chr8_2:13728741-13728760 None:intergenic 40.0%
TTAAGTGCATGTGAGGATTG+AGG + chr8_2:13728791-13728810 None:intergenic 40.0%
AGCCAAAACATGAAGGAATC+AGG + chr8_2:13729016-13729035 None:intergenic 40.0%
!! CGCATTCCTGCATTTTTAAG+AGG + chr8_2:13729099-13729118 None:intergenic 40.0%
AAGTTAAAAAGCCTGCAGCA+TGG - chr8_2:13729136-13729155 Msa1235610:intron 40.0%
! AGAATATGAGTGGGTTCACA+AGG - chr8_2:13729180-13729199 Msa1235610:intron 40.0%
! TGCCTTCTTTTCCTTTTAGC+CGG - chr8_2:13729300-13729319 Msa1235610:CDS 40.0%
TTCCGGCTAAAAGGAAAAGA+AGG + chr8_2:13729305-13729324 None:intergenic 40.0%
! CTTTTCCTTTTAGCCGGAAA+TGG - chr8_2:13729306-13729325 Msa1235610:CDS 40.0%
! TTTTTCCTGTGACCTTGTCT+TGG - chr8_2:13729346-13729365 Msa1235610:CDS 40.0%
! ATTTTGGACTGCATTTCAGC+TGG - chr8_2:13729377-13729396 Msa1235610:CDS 40.0%
TTCCGTTTCTGTTTCCGTTC+TGG + chr8_2:13723761-13723780 None:intergenic 45.0%
GGAAACAGAAACGGAAACGA+AGG - chr8_2:13723765-13723784 Msa1235610:CDS 45.0%
TAATCATCGAAGGACGGAAC+GGG + chr8_2:13723792-13723811 None:intergenic 45.0%
CGAAAAACGCGCTAAGTCTA+AGG - chr8_2:13723867-13723886 Msa1235610:intron 45.0%
! TTGTGTGTTGTTGTAGCCTC+CGG - chr8_2:13724014-13724033 Msa1235610:intron 45.0%
! TTGCAAGCCTGATGATGAAG+AGG - chr8_2:13724089-13724108 Msa1235610:intron 45.0%
! TGCCCTTAGAGCACTAGTTA+AGG - chr8_2:13724548-13724567 Msa1235610:intron 45.0%
!!! TAGTTGGCTCGGTTTTGCAT+TGG - chr8_2:13724583-13724602 Msa1235610:intron 45.0%
GATGCTAATGAGATGGTCGA+TGG - chr8_2:13724766-13724785 Msa1235610:intron 45.0%
TGTGTGTTGGATTGTTGGTG+TGG - chr8_2:13725017-13725036 Msa1235610:intron 45.0%
GTGTGTTGGATTGTTGGTGT+GGG - chr8_2:13725018-13725037 Msa1235610:intron 45.0%
TGTGTTGGATTGTTGGTGTG+GGG - chr8_2:13725019-13725038 Msa1235610:intron 45.0%
!! TTGCTTAAAGAGTGCCCGTA+GGG - chr8_2:13725256-13725275 Msa1235610:intron 45.0%
CATGTTAACATGTGCCCTAC+GGG + chr8_2:13725273-13725292 None:intergenic 45.0%
ACTAGACTGCTCTAACAGCT+GGG + chr8_2:13725458-13725477 None:intergenic 45.0%
AACTAGACTGCTCTAACAGC+TGG + chr8_2:13725459-13725478 None:intergenic 45.0%
! TTCATGGTGGAAGAGAGTGT+GGG + chr8_2:13725537-13725556 None:intergenic 45.0%
! TTTCATGGTGGAAGAGAGTG+TGG + chr8_2:13725538-13725557 None:intergenic 45.0%
CGTGTGTTTCCATTCCTTAC+TGG - chr8_2:13725602-13725621 Msa1235610:intron 45.0%
TGATGGCAGCGCTAGATATT+TGG - chr8_2:13725864-13725883 Msa1235610:intron 45.0%
GATGGCAGCGCTAGATATTT+GGG - chr8_2:13725865-13725884 Msa1235610:intron 45.0%
ATGGCAGCGCTAGATATTTG+GGG - chr8_2:13725866-13725885 Msa1235610:intron 45.0%
CAGTGTTAAGTCACAAAGGG+AGG - chr8_2:13726002-13726021 Msa1235610:CDS 45.0%
! CACTTGCCGCTTCAATTCTA+CGG - chr8_2:13726486-13726505 Msa1235610:intron 45.0%
TCACTATCTCTTTCACCGTG+TGG - chr8_2:13726803-13726822 Msa1235610:intron 45.0%
AAATGAGCAGTAGGTCCTTC+AGG + chr8_2:13727075-13727094 None:intergenic 45.0%
AACAACTTCACAACACGCCT+AGG - chr8_2:13727602-13727621 Msa1235610:intron 45.0%
ACAACTTCACAACACGCCTA+GGG - chr8_2:13727603-13727622 Msa1235610:intron 45.0%
CCTTTAAACTCGGGATCTTG+GGG + chr8_2:13727987-13728006 None:intergenic 45.0%
CCCTTTAAACTCGGGATCTT+GGG + chr8_2:13727988-13728007 None:intergenic 45.0%
CCCAAGATCCCGAGTTTAAA+GGG - chr8_2:13727985-13728004 Msa1235610:intron 45.0%
TACACGTCGCCCTTTAAACT+CGG + chr8_2:13727997-13728016 None:intergenic 45.0%
!! CGGGCAATTGTTTTATGGTC+AGG + chr8_2:13728230-13728249 None:intergenic 45.0%
ATTGACACCAACCTGAAGAC+GGG + chr8_2:13728249-13728268 None:intergenic 45.0%
TTGCAGGTACTCAAAACCTG+AGG + chr8_2:13728663-13728682 None:intergenic 45.0%
TCTTCTGCGGCAGTATTGTT+AGG + chr8_2:13728828-13728847 None:intergenic 45.0%
GACCAATCCTTCCAACATGA+CGG + chr8_2:13728860-13728879 None:intergenic 45.0%
TGTCAAATGTTCCATGCTGC+AGG + chr8_2:13729150-13729169 None:intergenic 45.0%
TGTGTCCATTTCCGGCTAAA+AGG + chr8_2:13729314-13729333 None:intergenic 45.0%
! CTTCGACTTGTGTCCATTTC+CGG + chr8_2:13729322-13729341 None:intergenic 45.0%
AAATGGACACAAGTCGAAGG+AGG - chr8_2:13729323-13729342 Msa1235610:CDS 45.0%
AAGTTCCAAGACAAGGTCAC+AGG + chr8_2:13729354-13729373 None:intergenic 45.0%
ACTGCATTTCAGCTGGAACT+TGG - chr8_2:13729384-13729403 Msa1235610:CDS 45.0%
CAGCTGGAACTTGGTTAATC+TGG - chr8_2:13729393-13729412 Msa1235610:CDS 45.0%
!! ATAAATAATAATTAGTTAAA+GGG + chr8_2:13725297-13725316 None:intergenic 5.0%
!! AATAAATAATAATTAGTTAA+AGG + chr8_2:13725298-13725317 None:intergenic 5.0%
!!! TTTTGTATTTTAATTTATTA+TGG - chr8_2:13729468-13729487 Msa1235610:five_prime_UTR 5.0%
CGCGGTGGTTATTCCTACAA+TGG - chr8_2:13723669-13723688 Msa1235610:three_prime_UTR 50.0%
ATTCCTACAATGGCGATCGG+TGG - chr8_2:13723679-13723698 Msa1235610:three_prime_UTR 50.0%
TTTCCACCGATCGCCATTGT+AGG + chr8_2:13723685-13723704 None:intergenic 50.0%
!!! GAAAGGGGTTTTGGCTCGTA+TGG - chr8_2:13724676-13724695 Msa1235610:intron 50.0%
GGTCGATGGAGATGTAGTCT+TGG - chr8_2:13724780-13724799 Msa1235610:intron 50.0%
ATAGCTGTTGTGTGAGCTGC+AGG - chr8_2:13724899-13724918 Msa1235610:CDS 50.0%
TTGTTGGTGTGGGGATCTGT+TGG - chr8_2:13725028-13725047 Msa1235610:intron 50.0%
TGGGGATCTGTTGGATACAG+CGG - chr8_2:13725037-13725056 Msa1235610:intron 50.0%
! CTGATTTGTGCGCGCATGTA+CGG - chr8_2:13725122-13725141 Msa1235610:CDS 50.0%
!! CTTGCTTAAAGAGTGCCCGT+AGG - chr8_2:13725255-13725274 Msa1235610:intron 50.0%
CTAGACTGCTCTAACAGCTG+GGG + chr8_2:13725457-13725476 None:intergenic 50.0%
CGTAGAATTGAAGCGGCAAG+TGG + chr8_2:13726488-13726507 None:intergenic 50.0%
!! AGGAGTAAGAGTCGAGTTGG+AGG - chr8_2:13726620-13726639 Msa1235610:CDS 50.0%
CCTACTTGGTTCCCTACGAT+TGG + chr8_2:13726942-13726961 None:intergenic 50.0%
CCAATCGTAGGGAACCAAGT+AGG - chr8_2:13726939-13726958 Msa1235610:intron 50.0%
ATCGTAGGGAACCAAGTAGG+TGG - chr8_2:13726942-13726961 Msa1235610:intron 50.0%
!! ACTCAAAGGCACCACCTACT+TGG + chr8_2:13726956-13726975 None:intergenic 50.0%
TGTGTCCCCTTGCAGAATCA+TGG - chr8_2:13727545-13727564 Msa1235610:intron 50.0%
GGACTCCATGATTCTGCAAG+GGG + chr8_2:13727553-13727572 None:intergenic 50.0%
GGGACTCCATGATTCTGCAA+GGG + chr8_2:13727554-13727573 None:intergenic 50.0%
TGGGACTCCATGATTCTGCA+AGG + chr8_2:13727555-13727574 None:intergenic 50.0%
TGTTCAACACAAGCTCAGGC+TGG + chr8_2:13727586-13727605 None:intergenic 50.0%
CCCCAAGATCCCGAGTTTAA+AGG - chr8_2:13727984-13728003 Msa1235610:intron 50.0%
GCCCTTTAAACTCGGGATCT+TGG + chr8_2:13727989-13728008 None:intergenic 50.0%
ACACGTCGCCCTTTAAACTC+GGG + chr8_2:13727996-13728015 None:intergenic 50.0%
GAAGTCTCTCTGGTTGTGGA+AGG + chr8_2:13728024-13728043 None:intergenic 50.0%
ACAATTGCCCGTCTTCAGGT+TGG - chr8_2:13728239-13728258 Msa1235610:intron 50.0%
CAGTGGTAGACTGGTAGTCT+TGG - chr8_2:13728625-13728644 Msa1235610:intron 50.0%
! TGGTAGACTGGTAGTCTTGG+TGG - chr8_2:13728628-13728647 Msa1235610:intron 50.0%
! TTGGTGGATGCAGTATCCTC+AGG - chr8_2:13728644-13728663 Msa1235610:intron 50.0%
ATGACTAACAAAGGGGAGGC+TGG + chr8_2:13728737-13728756 None:intergenic 50.0%
TGCATGTGAGGATTGAGGAG+GGG + chr8_2:13728786-13728805 None:intergenic 50.0%
GTGCATGTGAGGATTGAGGA+GGG + chr8_2:13728787-13728806 None:intergenic 50.0%
AGTGCATGTGAGGATTGAGG+AGG + chr8_2:13728788-13728807 None:intergenic 50.0%
ATCCTTCCAACATGACGGCA+AGG + chr8_2:13728855-13728874 None:intergenic 50.0%
TGCCGTCATGTTGGAAGGAT+TGG - chr8_2:13728855-13728874 Msa1235610:intron 50.0%
CGGAAATGGACACAAGTCGA+AGG - chr8_2:13729320-13729339 Msa1235610:CDS 50.0%
CTCTTCGAAAAACCCTCGCG+CGG - chr8_2:13723651-13723670 Msa1235610:three_prime_UTR 55.0%
TAGGAATAACCACCGCGCGA+GGG + chr8_2:13723666-13723685 None:intergenic 55.0%
CAATGGCGATCGGTGGAAAG+AGG - chr8_2:13723686-13723705 Msa1235610:three_prime_UTR 55.0%
AGCTATTGAGCTCGGCGAAG+AGG - chr8_2:13723912-13723931 Msa1235610:intron 55.0%
GTTGTAGCCTCCGGAGAAGA+AGG - chr8_2:13724023-13724042 Msa1235610:intron 55.0%
GTCTTCGGCACCTTCTTCTC+CGG + chr8_2:13724036-13724055 None:intergenic 55.0%
!! TGATGCTAGGTGTCGCTCAG+TGG - chr8_2:13724273-13724292 Msa1235610:intron 55.0%
CTGTTGTGTGAGCTGCAGGT+CGG - chr8_2:13724903-13724922 Msa1235610:CDS 55.0%
ACCTTCCAACACGATGCCCT+AGG + chr8_2:13727622-13727641 None:intergenic 55.0%
ACAAAGGGGAGGCTGGAAGA+TGG + chr8_2:13728730-13728749 None:intergenic 55.0%
TGCCTTGCCGTCATGTTGGA+AGG - chr8_2:13728850-13728869 Msa1235610:intron 55.0%
TTCGAAAAACCCTCGCGCGG+TGG - chr8_2:13723654-13723673 Msa1235610:three_prime_UTR 60.0%
GTAGGAATAACCACCGCGCG+AGG + chr8_2:13723667-13723686 None:intergenic 60.0%
TTCGGCACCTTCTTCTCCGG+AGG + chr8_2:13724033-13724052 None:intergenic 60.0%
!! CTAGGTGTCGCTCAGTGGCA+CGG - chr8_2:13724278-13724297 Msa1235610:intron 60.0%
!! TAGGTGTCGCTCAGTGGCAC+GGG - chr8_2:13724279-13724298 Msa1235610:intron 60.0%
CTTGCCTTCTGGTCTGCCTC+TGG - chr8_2:13724938-13724957 Msa1235610:CDS 60.0%
TGCACCAGAGGCAGACCAGA+AGG + chr8_2:13724945-13724964 None:intergenic 60.0%
CAGCAGTACCACTGCACCAG+AGG + chr8_2:13724957-13724976 None:intergenic 60.0%
GACTGCTCTAACAGCTGGGG+AGG + chr8_2:13725454-13725473 None:intergenic 60.0%
! GCTCAGGCTGGTGACTGGTT+GGG + chr8_2:13727574-13727593 None:intergenic 60.0%
AGCTCAGGCTGGTGACTGGT+TGG + chr8_2:13727575-13727594 None:intergenic 60.0%
CACAAGCTCAGGCTGGTGAC+TGG + chr8_2:13727579-13727598 None:intergenic 60.0%
!! ACACGCCTAGGGCATCGTGT+TGG - chr8_2:13727614-13727633 Msa1235610:intron 60.0%
!! GCCTAGGGCATCGTGTTGGA+AGG - chr8_2:13727618-13727637 Msa1235610:intron 60.0%
ACGGCAAGGCAGCTCTTCTG+CGG + chr8_2:13728841-13728860 None:intergenic 60.0%
GAGCTGCCTTGCCGTCATGT+TGG - chr8_2:13728846-13728865 Msa1235610:intron 60.0%
CTGGTCTGCCTCTGGTGCAG+TGG - chr8_2:13724946-13724965 Msa1235610:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 13723621 13729496 13723621 ID=Msa1235610;Name=Msa1235610
chr8_2 mRNA 13723621 13729496 13723621 ID=Msa1235610-mRNA-1;Parent=Msa1235610;Name=Msa1235610-mRNA-1;_AED=0.14;_eAED=0.14;_QI=67|1|1|1|0.9|0.90|11|139|358
chr8_2 exon 13723621 13723798 13723621 ID=Msa1235610-mRNA-1:exon:5323;Parent=Msa1235610-mRNA-1
chr8_2 exon 13723916 13724005 13723916 ID=Msa1235610-mRNA-1:exon:5322;Parent=Msa1235610-mRNA-1
chr8_2 exon 13724861 13724969 13724861 ID=Msa1235610-mRNA-1:exon:5321;Parent=Msa1235610-mRNA-1
chr8_2 exon 13725054 13725152 13725054 ID=Msa1235610-mRNA-1:exon:5320;Parent=Msa1235610-mRNA-1
chr8_2 exon 13725478 13725557 13725478 ID=Msa1235610-mRNA-1:exon:5319;Parent=Msa1235610-mRNA-1
chr8_2 exon 13725986 13726068 13725986 ID=Msa1235610-mRNA-1:exon:5318;Parent=Msa1235610-mRNA-1
chr8_2 exon 13726161 13726230 13726161 ID=Msa1235610-mRNA-1:exon:5317;Parent=Msa1235610-mRNA-1
chr8_2 exon 13726327 13726410 13726327 ID=Msa1235610-mRNA-1:exon:5316;Parent=Msa1235610-mRNA-1
chr8_2 exon 13726610 13726705 13726610 ID=Msa1235610-mRNA-1:exon:5315;Parent=Msa1235610-mRNA-1
chr8_2 exon 13729007 13729087 13729007 ID=Msa1235610-mRNA-1:exon:5314;Parent=Msa1235610-mRNA-1
chr8_2 exon 13729184 13729496 13729184 ID=Msa1235610-mRNA-1:exon:5313;Parent=Msa1235610-mRNA-1
chr8_2 five_prime_UTR 13729430 13729496 13729430 ID=Msa1235610-mRNA-1:five_prime_utr;Parent=Msa1235610-mRNA-1
chr8_2 CDS 13729184 13729429 13729184 ID=Msa1235610-mRNA-1:cds;Parent=Msa1235610-mRNA-1
chr8_2 CDS 13729007 13729087 13729007 ID=Msa1235610-mRNA-1:cds;Parent=Msa1235610-mRNA-1
chr8_2 CDS 13726610 13726705 13726610 ID=Msa1235610-mRNA-1:cds;Parent=Msa1235610-mRNA-1
chr8_2 CDS 13726327 13726410 13726327 ID=Msa1235610-mRNA-1:cds;Parent=Msa1235610-mRNA-1
chr8_2 CDS 13726161 13726230 13726161 ID=Msa1235610-mRNA-1:cds;Parent=Msa1235610-mRNA-1
chr8_2 CDS 13725986 13726068 13725986 ID=Msa1235610-mRNA-1:cds;Parent=Msa1235610-mRNA-1
chr8_2 CDS 13725478 13725557 13725478 ID=Msa1235610-mRNA-1:cds;Parent=Msa1235610-mRNA-1
chr8_2 CDS 13725054 13725152 13725054 ID=Msa1235610-mRNA-1:cds;Parent=Msa1235610-mRNA-1
chr8_2 CDS 13724861 13724969 13724861 ID=Msa1235610-mRNA-1:cds;Parent=Msa1235610-mRNA-1
chr8_2 CDS 13723916 13724005 13723916 ID=Msa1235610-mRNA-1:cds;Parent=Msa1235610-mRNA-1
chr8_2 CDS 13723760 13723798 13723760 ID=Msa1235610-mRNA-1:cds;Parent=Msa1235610-mRNA-1
chr8_2 three_prime_UTR 13723621 13723759 13723621 ID=Msa1235610-mRNA-1:three_prime_utr;Parent=Msa1235610-mRNA-1
Gene Sequence

>Msa1235610

ATGGCGATCGGTGGAAAGAGGAAGCGCAACAATGATTCAGACGGCGAAGATAATTCTTCCAAGAGAAAAACCAGAACGGAAACAGAAACGGAAACGAAGGACCCGTTCCGTCCTTCGATGATTAAGAACAAAGAAAAACGATCTGAAATTCATGCCAAGCTTAAGCATCAGAAGAAGCTCGAAAAACGCGCTAAGTCTAAGGCTCGTGATGCTGCTGTTAAAAGAGCTATTGAGCTCGGCGAAGAGCCTCCGGAGAAGAAGGTGCCGAAGACGATTGAAAATACAAGGGAAGCTGATGAAACTATTTGCAAGCCTGATGATGAAGAGCTATTTGCTGGAAATGATGCTGATGAATTCAGTTCAATATTAAAGCGGCAACAAAGTCCCAAGATATTAATCACCACTTGCCGCTTCAATTCTACGAGGGGACCTGCTTTAATATCAGAATTGCTTCAGGTTATACCAAATGCACATTACTTCAAGAGAGGAACCTATGATTTAAAAAAGATTGTTGAATATGCAAATAAAAAGGACTTCACTTCTCTTGTAGTTGTACACACCAATCGTAGGGAACCAAATGCTCTCTTGATTATTGGCTTACCTGAAGGACCTACTGCTCATTTCAAACTCACAAATCTTGTTTTACGCAAGGATATTAAGAATCATGGAGTCCCAACCAGTCACCAGCCTGAGCTTGTGTTGAACAACTTCACAACACGCCTAGGGCATCGTGTTGGAAGAATGATACAGTCACTTTTTCCCCAAGATCCCGAGTTTAAAGGGCGACGTGTAGTTACCTTCCACAACCAGAGAGACTTCATATTCTTCCGGCATCATCGGTATATTTTCGAGACCAAAGAAATTAAAAAGATTGAGTCTAAAGGTAAAAATGACGAGGATGGCAAGAGTGAGAAAGTTCCTGACCATAAAACAATTGCCCGTCTTCAGGAATGCGGCCCTCGTTTCACATTGAAGTTAAAAAGCCTGCAGCATGGAACATTTGACACTAAAAGTGGAGAATATGAGTGGGTTCACAAGCCGGAAATGGACACAAGTCGAAGGAGGTTTTTCCTGTGA

Protein sequence

>Msa1235610

MAIGGKRKRNNDSDGEDNSSKRKTRTETETETKDPFRPSMIKNKEKRSEIHAKLKHQKKLEKRAKSKARDAAVKRAIELGEEPPEKKVPKTIENTREADETICKPDDEELFAGNDADEFSSILKRQQSPKILITTCRFNSTRGPALISELLQVIPNAHYFKRGTYDLKKIVEYANKKDFTSLVVVHTNRREPNALLIIGLPEGPTAHFKLTNLVLRKDIKNHGVPTSHQPELVLNNFTTRLGHRVGRMIQSLFPQDPEFKGRRVVTFHNQRDFIFFRHHRYIFETKEIKKIESKGKNDEDGKSEKVPDHKTIARLQECGPRFTLKLKSLQHGTFDTKSGEYEWVHKPEMDTSRRRFFL*