Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1411970 | sp|Q9C829|NU50A_ARATH | 46.170 | 470 | 199 | 14 | 7 | 453 | 1 | 439 | 2.09e-103 | 318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1411970 | A0A072USC3 | 93.973 | 448 | 16 | 2 | 7 | 454 | 1 | 437 | 0.0 | 824 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0072420 | Msa1411970 | 0.825240 | 5.220664e-54 | -8.615850e-47 |
| Msa1351540 | Msa1411970 | 0.800733 | 1.254593e-48 | -8.615850e-47 |
| Msa1381350 | Msa1411970 | 0.804523 | 2.073326e-49 | -8.615850e-47 |
| Msa1385720 | Msa1411970 | 0.858651 | 7.116032e-63 | -8.615850e-47 |
| Msa1411970 | Msa1434090 | 0.867573 | 1.238726e-65 | -8.615850e-47 |
| Msa1411970 | Msa1434950 | 0.836424 | 9.433330e-57 | -8.615850e-47 |
| Msa0626630 | Msa1411970 | 0.861742 | 8.285124e-64 | -8.615850e-47 |
| Msa0626950 | Msa1411970 | 0.817633 | 2.980013e-52 | -8.615850e-47 |
| Msa0627380 | Msa1411970 | 0.821709 | 3.495880e-53 | -8.615850e-47 |
| Msa0628410 | Msa1411970 | 0.933406 | 1.969728e-95 | -8.615850e-47 |
| Msa0634890 | Msa1411970 | 0.820335 | 7.243656e-53 | -8.615850e-47 |
| Msa0664750 | Msa1411970 | 0.857927 | 1.169134e-62 | -8.615850e-47 |
| Msa0665100 | Msa1411970 | 0.859214 | 4.829349e-63 | -8.615850e-47 |
| Msa0689440 | Msa1411970 | 0.821663 | 3.581296e-53 | -8.615850e-47 |
| Msa0698780 | Msa1411970 | 0.819312 | 1.240785e-52 | -8.615850e-47 |
| Msa0752700 | Msa1411970 | 0.809034 | 2.310222e-50 | -8.615850e-47 |
| Msa0794970 | Msa1411970 | 0.801535 | 8.602028e-49 | -8.615850e-47 |
| Msa0831100 | Msa1411970 | 0.806983 | 6.310016e-50 | -8.615850e-47 |
| Msa0120880 | Msa1411970 | 0.838112 | 3.488957e-57 | -8.615850e-47 |
| Msa0125450 | Msa1411970 | 0.806923 | 6.498559e-50 | -8.615850e-47 |
| Msa0149440 | Msa1411970 | 0.826051 | 3.352971e-54 | -8.615850e-47 |
| Msa0177960 | Msa1411970 | 0.810746 | 9.886544e-51 | -8.615850e-47 |
| Msa0189700 | Msa1411970 | 0.818551 | 1.847583e-52 | -8.615850e-47 |
| Msa0204960 | Msa1411970 | 0.804055 | 2.595621e-49 | -8.615850e-47 |
| Msa0232010 | Msa1411970 | 0.821260 | 4.437094e-53 | -8.615850e-47 |
| Msa0232080 | Msa1411970 | 0.819919 | 9.018390e-53 | -8.615850e-47 |
| Msa1264210 | Msa1411970 | 0.814042 | 1.883927e-51 | -8.615850e-47 |
| Msa1275680 | Msa1411970 | 0.816099 | 6.584128e-52 | -8.615850e-47 |
| Msa1277260 | Msa1411970 | 0.817585 | 3.054978e-52 | -8.615850e-47 |
| Msa1300620 | Msa1411970 | 0.833082 | 6.542528e-56 | -8.615850e-47 |
| Msa1302380 | Msa1411970 | 0.802197 | 6.288420e-49 | -8.615850e-47 |
| Msa1315890 | Msa1411970 | 0.845361 | 4.259898e-59 | -8.615850e-47 |
| Msa1329730 | Msa1411970 | 0.836228 | 1.058343e-56 | -8.615850e-47 |
| Msa1329750 | Msa1411970 | 0.806108 | 9.654520e-50 | -8.615850e-47 |
| Msa1332590 | Msa1411970 | 0.823388 | 1.423063e-53 | -8.615850e-47 |
| Msa0377820 | Msa1411970 | 0.825439 | 4.684245e-54 | -8.615850e-47 |
| Msa0426580 | Msa1411970 | 0.826089 | 3.284337e-54 | -8.615850e-47 |
| Msa0437020 | Msa1411970 | 0.866603 | 2.526359e-65 | -8.615850e-47 |
| Msa0462600 | Msa1411970 | 0.809172 | 2.157637e-50 | -8.615850e-47 |
| Msa0472930 | Msa1411970 | 0.824116 | 9.610242e-54 | -8.615850e-47 |
| Msa1012740 | Msa1411970 | 0.816554 | 5.209480e-52 | -8.615850e-47 |
| Msa0249580 | Msa1411970 | 0.811310 | 7.462397e-51 | -8.615850e-47 |
| Msa0258390 | Msa1411970 | 0.807900 | 4.032213e-50 | -8.615850e-47 |
| Msa0281530 | Msa1411970 | 0.809549 | 1.791401e-50 | -8.615850e-47 |
| Msa0284180 | Msa1411970 | 0.808675 | 2.756937e-50 | -8.615850e-47 |
| Msa0296630 | Msa1411970 | -0.813032 | 3.142116e-51 | -8.615850e-47 |
| Msa0343500 | Msa1411970 | 0.820788 | 5.699722e-53 | -8.615850e-47 |
| Msa0357900 | Msa1411970 | 0.803134 | 4.029135e-49 | -8.615850e-47 |
| Msa1123770 | Msa1411970 | 0.858107 | 1.033596e-62 | -8.615850e-47 |
| Msa1126830 | Msa1411970 | 0.833381 | 5.509145e-56 | -8.615850e-47 |
| Msa1165270 | Msa1411970 | 0.801292 | 9.647041e-49 | -8.615850e-47 |
| Msa1165780 | Msa1411970 | 0.816318 | 5.881834e-52 | -8.615850e-47 |
| Msa1165940 | Msa1411970 | 0.800599 | 1.336331e-48 | -8.615850e-47 |
| Msa1169910 | Msa1411970 | 0.856131 | 3.958238e-62 | -8.615850e-47 |
| Msa1209200 | Msa1411970 | 0.805927 | 1.053879e-49 | -8.615850e-47 |
| Msa0517590 | Msa1411970 | 0.821808 | 3.315432e-53 | -8.615850e-47 |
| Msa0531230 | Msa1411970 | 0.932571 | 6.971512e-95 | -8.615850e-47 |
| Msa0531650 | Msa1411970 | 0.810307 | 1.230250e-50 | -8.615850e-47 |
| Msa0539410 | Msa1411970 | 0.812951 | 3.274526e-51 | -8.615850e-47 |
| Msa0549450 | Msa1411970 | 0.811085 | 8.350083e-51 | -8.615850e-47 |
| Msa0578140 | Msa1411970 | 0.866267 | 3.230389e-65 | -8.615850e-47 |
| Msa0581110 | Msa1411970 | 0.836101 | 1.140086e-56 | -8.615850e-47 |
| Msa0581280 | Msa1411970 | 0.806302 | 8.785883e-50 | -8.615850e-47 |
| Msa0586420 | Msa1411970 | 0.800723 | 1.260694e-48 | -8.615850e-47 |
| Msa0588360 | Msa1411970 | 0.817221 | 3.689484e-52 | -8.615850e-47 |
| Msa0595170 | Msa1411970 | 0.819584 | 1.075564e-52 | -8.615850e-47 |
| Msa0881290 | Msa1411970 | 0.816270 | 6.028598e-52 | -8.615850e-47 |
| Msa0958000 | Msa1411970 | 0.842521 | 2.457590e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1411970 | MtrunA17_Chr4g0004231 | 93.973 | 448 | 16 | 2 | 7 | 454 | 1 | 437 | 0.0 | 824 |
| Msa1411970 | MtrunA17_Chr1g0210671 | 76.596 | 94 | 20 | 1 | 1 | 92 | 19 | 112 | 1.51e-32 | 122 |
| Msa1411970 | MtrunA17_Chr3g0089741 | 72.917 | 48 | 13 | 0 | 7 | 54 | 1 | 48 | 1.27e-15 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1411970 | AT1G52380.3 | 46.170 | 470 | 199 | 14 | 7 | 453 | 1 | 439 | 2.13e-104 | 318 |
| Msa1411970 | AT1G52380.2 | 46.170 | 470 | 199 | 14 | 7 | 453 | 1 | 439 | 2.13e-104 | 318 |
| Msa1411970 | AT1G52380.1 | 46.170 | 470 | 199 | 14 | 7 | 453 | 1 | 439 | 2.13e-104 | 318 |
| Msa1411970 | AT1G52380.4 | 46.170 | 470 | 199 | 14 | 7 | 453 | 1 | 439 | 2.13e-104 | 318 |
| Msa1411970 | AT3G15970.2 | 42.562 | 484 | 221 | 14 | 7 | 453 | 1 | 464 | 1.11e-91 | 286 |
| Msa1411970 | AT3G15970.1 | 42.562 | 484 | 221 | 14 | 7 | 453 | 1 | 464 | 1.11e-91 | 286 |
Find 126 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACAGGTCTTGCTGGGTC+TGG | 0.282996 | tig0023857:+64470 | Msa1411970:CDS |
| ATAGAAGTTCTTTCTGTAAT+GGG | 0.291390 | tig0023857:+63723 | Msa1411970:intron |
| TGAAATGAAGCTCACAAATA+TGG | 0.293632 | tig0023857:+64883 | Msa1411970:CDS |
| ATATTTGTGAGCTTCATTTC+AGG | 0.313432 | tig0023857:-64881 | None:intergenic |
| CCGAGTCCTTATGAGGTCTA+AGG | 0.316914 | tig0023857:+64823 | Msa1411970:CDS |
| TTATCTAACGCTGGAAGTTC+TGG | 0.321462 | tig0023857:+64605 | Msa1411970:CDS |
| TTGAAACCTGACCAGCCTTT+AGG | 0.324636 | tig0023857:+64575 | Msa1411970:CDS |
| TAAGAAGGAAGTTGCTGATA+AGG | 0.332879 | tig0023857:+64214 | Msa1411970:CDS |
| TGTTACTTTGACCATTCTTC+TGG | 0.332895 | tig0023857:-63889 | None:intergenic |
| AACGCTGGAAGTTCTGGTTT+TGG | 0.337784 | tig0023857:+64611 | Msa1411970:CDS |
| AATGCCTTCACAGGTCTTGC+TGG | 0.338943 | tig0023857:+64464 | Msa1411970:CDS |
| CCTGACCAGCCTTTAGGTCT+TGG | 0.361060 | tig0023857:+64581 | Msa1411970:CDS |
| TCATCTTCCTCGTCGTCAAT+AGG | 0.362423 | tig0023857:-63813 | None:intergenic |
| ACCTCAGGAGCTTTGCTCTC+TGG | 0.367425 | tig0023857:-64050 | None:intergenic |
| TGTAGACCCGAAGGAAAATA+AGG | 0.369166 | tig0023857:-64504 | None:intergenic |
| TCTTCATCCTTAGCTTTCTC+TGG | 0.371345 | tig0023857:-64017 | None:intergenic |
| AACAAATGATGGGTCTACTT+TGG | 0.384601 | tig0023857:+64526 | Msa1411970:CDS |
| CGTATACCAGCGAAAGGGTT+TGG | 0.386213 | tig0023857:-63936 | None:intergenic |
| GAAGCCTTGGGAGAGTTCTC+TGG | 0.387453 | tig0023857:-65055 | None:intergenic |
| AATAGAAGTTCTTTCTGTAA+TGG | 0.388348 | tig0023857:+63722 | Msa1411970:intron |
| TCTACTTTGGGTAGTGGGTC+CGG | 0.396921 | tig0023857:+64539 | Msa1411970:CDS |
| TCTTGAAAGTCCCGGCTTCA+AGG | 0.403876 | tig0023857:-63842 | None:intergenic |
| TTCCTGCAGTGTTTCAGTCT+TGG | 0.406473 | tig0023857:-64657 | None:intergenic |
| GAGCGACAGTGACAACTCTA+AGG | 0.408430 | tig0023857:+64145 | Msa1411970:CDS |
| AATTTCCCTTAGACCTCATA+AGG | 0.415992 | tig0023857:-64829 | None:intergenic |
| AGCTCAAACATCAGAAGCCT+TGG | 0.417787 | tig0023857:-65068 | None:intergenic |
| CCTTACAGTCGTCAAAGAAA+AGG | 0.420646 | tig0023857:+63760 | Msa1411970:CDS |
| CCAAGACCTAAAGGCTGGTC+AGG | 0.423398 | tig0023857:-64581 | None:intergenic |
| ACAAATGATGGGTCTACTTT+GGG | 0.423993 | tig0023857:+64527 | Msa1411970:CDS |
| GGTTGGAAGGAACGTGGAAA+GGG | 0.429315 | tig0023857:+64758 | Msa1411970:CDS |
| TTTGCATTGAAGTTCAAAGA+TGG | 0.435158 | tig0023857:+64962 | Msa1411970:CDS |
| ACTGAATCCACTGCCAAGTC+TGG | 0.437172 | tig0023857:+63972 | Msa1411970:CDS |
| TATTTGTGAGCTTCATTTCA+GGG | 0.440319 | tig0023857:-64880 | None:intergenic |
| TTCGGGTCTACAACAAATGA+TGG | 0.442733 | tig0023857:+64515 | Msa1411970:CDS |
| CCTTAGACCTCATAAGGACT+CGG | 0.444298 | tig0023857:-64823 | None:intergenic |
| GAGCAAAGCTCCTGAGGTTG+AGG | 0.446588 | tig0023857:+64055 | Msa1411970:CDS |
| AGGCAAGGAGCTTGCGGAGA+AGG | 0.452508 | tig0023857:+64121 | Msa1411970:CDS |
| GGTAGATAATGAACAGAGTA+AGG | 0.452713 | tig0023857:+64166 | Msa1411970:CDS |
| TCGTCAAAGAAAAGGGCTGC+TGG | 0.453932 | tig0023857:+63768 | Msa1411970:CDS |
| AGTAAGTGAAAGCAAGGATA+AGG | 0.460546 | tig0023857:+64337 | Msa1411970:CDS |
| GATTGAAAATGAGGATAAGA+AGG | 0.464936 | tig0023857:+64199 | Msa1411970:CDS |
| CAGGAAGTCGTTGTTGAAAC+CGG | 0.466180 | tig0023857:+64674 | Msa1411970:CDS |
| GCTCACAAATATGGAGAAGA+AGG | 0.474042 | tig0023857:+64892 | Msa1411970:CDS |
| ATGACGCTGCCCTTGAAGCC+GGG | 0.474337 | tig0023857:+63832 | Msa1411970:CDS |
| GATGACGCTGCCCTTGAAGC+CGG | 0.476093 | tig0023857:+63831 | Msa1411970:CDS |
| ATGGGTCTACTTTGGGTAGT+GGG | 0.480263 | tig0023857:+64534 | Msa1411970:CDS |
| ACTGGCTTTCTTGAAAGTCC+CGG | 0.480603 | tig0023857:-63850 | None:intergenic |
| AGTAGTAGCTTCACCAGACT+TGG | 0.481005 | tig0023857:-63985 | None:intergenic |
| GGTTGCAAGAACCTCCTCAC+TGG | 0.485123 | tig0023857:-63868 | None:intergenic |
| AAATAGTGAAAGCAAGGATA+AGG | 0.486758 | tig0023857:+64307 | Msa1411970:CDS |
| CCCTTCAGTGGCACATGCAA+AGG | 0.487875 | tig0023857:-64921 | None:intergenic |
| AGGTTGGAAGGAACGTGGAA+AGG | 0.496279 | tig0023857:+64757 | Msa1411970:CDS |
| CGTCGTCAATAGGAGTGTCT+CGG | 0.502212 | tig0023857:-63803 | None:intergenic |
| GCTGTTGAAATGATTTGAAA+GGG | 0.504844 | tig0023857:-64427 | None:intergenic |
| CTTACAGTCGTCAAAGAAAA+GGG | 0.505584 | tig0023857:+63761 | Msa1411970:CDS |
| GATGGGTCTACTTTGGGTAG+TGG | 0.506943 | tig0023857:+64533 | Msa1411970:CDS |
| TTGCATTGAAGTTCAAAGAT+GGG | 0.509535 | tig0023857:+64963 | Msa1411970:CDS |
| AGTCTTGAAATCCTCCACTA+TGG | 0.509950 | tig0023857:-64987 | None:intergenic |
| TTGGAGTAGATTTATTCTGT+TGG | 0.517375 | tig0023857:-63917 | None:intergenic |
| TTGAGTTTGCAGATGGAGGT+TGG | 0.519670 | tig0023857:+64741 | Msa1411970:CDS |
| TTAGATAAACCAAGACCTAA+AGG | 0.521590 | tig0023857:-64590 | None:intergenic |
| AGTAAGCGAAAGCAAAGATA+AGG | 0.521711 | tig0023857:+64367 | Msa1411970:CDS |
| TTGTTTGAGTTTGCAGATGG+AGG | 0.522768 | tig0023857:+64737 | Msa1411970:CDS |
| GTAGATTTGTCCTCAACCTC+AGG | 0.523191 | tig0023857:-64065 | None:intergenic |
| ATGCCTTCACAGGTCTTGCT+GGG | 0.525899 | tig0023857:+64465 | Msa1411970:CDS |
| TGGACGTAAGATTGAAAATG+AGG | 0.525984 | tig0023857:+64190 | Msa1411970:CDS |
| GTCGTCAATAGGAGTGTCTC+GGG | 0.531300 | tig0023857:-63802 | None:intergenic |
| GTGTTGTTTGAGTTTGCAGA+TGG | 0.533735 | tig0023857:+64734 | Msa1411970:CDS |
| CGGTGAAGAAAACGAGGAAG+TGG | 0.537379 | tig0023857:+64694 | Msa1411970:CDS |
| CTTGAAAGTCCCGGCTTCAA+GGG | 0.539539 | tig0023857:-63841 | None:intergenic |
| AGCTGTTGAAATGATTTGAA+AGG | 0.539560 | tig0023857:-64428 | None:intergenic |
| CTATCACAGCACACAAGGGT+GGG | 0.539717 | tig0023857:+65011 | Msa1411970:CDS |
| GTTTGCAGATGGAGGTTGGA+AGG | 0.542312 | tig0023857:+64745 | Msa1411970:CDS |
| GCTCAAACATCAGAAGCCTT+GGG | 0.542932 | tig0023857:-65067 | None:intergenic |
| GGTTCTTGCAACCAGAAGAA+TGG | 0.542934 | tig0023857:+63878 | Msa1411970:CDS |
| AGACAAAGTAAGTGAAAGCA+AGG | 0.543217 | tig0023857:+64331 | Msa1411970:CDS |
| GATAATGAACAGAGTAAGGA+TGG | 0.544320 | tig0023857:+64170 | Msa1411970:CDS |
| AAAGGGCCACCTTCAGCAGT+AGG | 0.547591 | tig0023857:-64410 | None:intergenic |
| AGCAATCAAAATGCCTTCAC+AGG | 0.548375 | tig0023857:+64455 | Msa1411970:CDS |
| ATAAACCAAGACCTAAAGGC+TGG | 0.555593 | tig0023857:-64586 | None:intergenic |
| AGCTTCACCAGACTTGGCAG+TGG | 0.560811 | tig0023857:-63979 | None:intergenic |
| AACTAGTGGAACAGAAAAGA+AGG | 0.562452 | tig0023857:+64799 | Msa1411970:CDS |
| GCCAGAGAGCAAAGCTCCTG+AGG | 0.563576 | tig0023857:+64049 | Msa1411970:CDS |
| TTCCAAGACTGAAACACTGC+AGG | 0.563759 | tig0023857:+64655 | Msa1411970:CDS |
| TAGAAGTTCTTTCTGTAATG+GGG | 0.563930 | tig0023857:+63724 | Msa1411970:intron |
| GCAGTGGATTCAGTAGGAGC+AGG | 0.564389 | tig0023857:-63963 | None:intergenic |
| CGTCAAAGAAAAGGGCTGCT+GGG | 0.566029 | tig0023857:+63769 | Msa1411970:CDS |
| CGAGTCCTTATGAGGTCTAA+GGG | 0.566826 | tig0023857:+64824 | Msa1411970:CDS |
| CAATGCAGGCAAGGAGCTTG+CGG | 0.566828 | tig0023857:+64115 | Msa1411970:CDS |
| AAGACGGTCTTTCCCTTCAG+TGG | 0.567228 | tig0023857:-64933 | None:intergenic |
| TCTACTCCAAACCCTTTCGC+TGG | 0.571206 | tig0023857:+63930 | Msa1411970:CDS |
| AGAAGGCCCGAGTCCTTATG+AGG | 0.572817 | tig0023857:+64816 | Msa1411970:CDS |
| GGCAAGCGTATACCAGCGAA+AGG | 0.572904 | tig0023857:-63942 | None:intergenic |
| GACTGCTATCACAGCACACA+AGG | 0.572911 | tig0023857:+65006 | Msa1411970:CDS |
| CCTTTGCATGTGCCACTGAA+GGG | 0.575965 | tig0023857:+64921 | Msa1411970:CDS |
| GAACGGAAATAGTGAAAGCA+AGG | 0.577253 | tig0023857:+64301 | Msa1411970:CDS |
| ACCTTTGCATGTGCCACTGA+AGG | 0.579423 | tig0023857:+64920 | Msa1411970:CDS |
| AGACCCAGCAAGACCTGTGA+AGG | 0.582987 | tig0023857:-64468 | None:intergenic |
| GTTCAAAGATGGGTCCATAG+TGG | 0.583030 | tig0023857:+64973 | Msa1411970:CDS |
| GTGAAAGTGAATGTAACTAG+TGG | 0.595453 | tig0023857:+64785 | Msa1411970:CDS |
| TACTTCAAACAACGATGTTG+CGG | 0.596477 | tig0023857:+64085 | Msa1411970:CDS |
| GGTCTTGGTTTATCTAACGC+TGG | 0.598167 | tig0023857:+64596 | Msa1411970:CDS |
| AGTGACGAGCCTACTGCTGA+AGG | 0.599077 | tig0023857:+64401 | Msa1411970:CDS |
| CTTAGACCTCATAAGGACTC+GGG | 0.601169 | tig0023857:-64822 | None:intergenic |
| GGACAGAAACAATGCAGGCA+AGG | 0.604459 | tig0023857:+64106 | Msa1411970:CDS |
| ATCATTTGTTGTAGACCCGA+AGG | 0.607405 | tig0023857:-64513 | None:intergenic |
| TATCACAGCACACAAGGGTG+GGG | 0.607843 | tig0023857:+65012 | Msa1411970:CDS |
| TCAATGCAAATGTTGAAAGA+CGG | 0.609075 | tig0023857:-64949 | None:intergenic |
| GCTATCACAGCACACAAGGG+TGG | 0.614339 | tig0023857:+65010 | Msa1411970:CDS |
| TCGGGTCTACAACAAATGAT+GGG | 0.616965 | tig0023857:+64516 | Msa1411970:CDS |
| AGAAGTTCTTTCTGTAATGG+GGG | 0.619400 | tig0023857:+63725 | Msa1411970:intron |
| GACGAGCCTACTGCTGAAGG+TGG | 0.621305 | tig0023857:+64404 | Msa1411970:CDS |
| GTTGCGGACAGAAACAATGC+AGG | 0.625399 | tig0023857:+64101 | Msa1411970:CDS |
| CTCACAAATATGGAGAAGAA+GGG | 0.630174 | tig0023857:+64893 | Msa1411970:CDS |
| GACTCCAGAGAACTCTCCCA+AGG | 0.630564 | tig0023857:+65051 | Msa1411970:CDS |
| AACGCAGCCAGAGAAAGCTA+AGG | 0.639096 | tig0023857:+64010 | Msa1411970:CDS |
| CAAAGATGGGTCCATAGTGG+AGG | 0.639977 | tig0023857:+64976 | Msa1411970:CDS |
| GCAAGCGTATACCAGCGAAA+GGG | 0.643938 | tig0023857:-63941 | None:intergenic |
| TTTCAAGAAAGCCAGTGAGG+AGG | 0.650952 | tig0023857:+63857 | Msa1411970:CDS |
| ACTGAGAACAGTGATAAGAA+CGG | 0.660347 | tig0023857:+64284 | Msa1411970:CDS |
| GACTTTCAAGAAAGCCAGTG+AGG | 0.667433 | tig0023857:+63854 | Msa1411970:CDS |
| GATGGAGGTTGGAAGGAACG+TGG | 0.668623 | tig0023857:+64752 | Msa1411970:CDS |
| GACTTGGCAGTGGATTCAGT+AGG | 0.688140 | tig0023857:-63969 | None:intergenic |
| TGAAACCGGTGAAGAAAACG+AGG | 0.705134 | tig0023857:+64688 | Msa1411970:CDS |
| ACTGCTATCACAGCACACAA+GGG | 0.723065 | tig0023857:+65007 | Msa1411970:CDS |
| AGACACTCCTATTGACGACG+AGG | 0.724010 | tig0023857:+63806 | Msa1411970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAATTATTATTATT+TGG | + | tig0023857:60347-60366 | Msa1411970:intron | 0.0% |
| !! | AAAATAAATTATTATTATTT+GGG | + | tig0023857:60348-60367 | Msa1411970:intron | 0.0% |
| !!! | ATGGATTTATTTTTAATAAA+CGG | + | tig0023857:60432-60451 | Msa1411970:intron | 10.0% |
| !!! | TGAAATTTTATTTTAACATA+AGG | + | tig0023857:60509-60528 | Msa1411970:intron | 10.0% |
| !!! | GAAATTTTATTTTAACATAA+GGG | + | tig0023857:60510-60529 | Msa1411970:intron | 10.0% |
| !!! | TGATTATATTATCTAAAATA+AGG | - | tig0023857:61229-61248 | None:intergenic | 10.0% |
| !!! | TATTTTAGATAATATAATCA+CGG | + | tig0023857:61229-61248 | Msa1411970:intron | 10.0% |
| !!! | CTAAAAAAGATTTTAAAAAT+AGG | + | tig0023857:62966-62985 | Msa1411970:intron | 10.0% |
| !!! | TTTTATAATTTGAAACGTAT+TGG | - | tig0023857:61504-61523 | None:intergenic | 15.0% |
| !!! | TAATTTTGAATTGATGATAA+CGG | + | tig0023857:62185-62204 | Msa1411970:intron | 15.0% |
| !! | CTTAACAAAATAAAAAAACT+TGG | - | tig0023857:62542-62561 | None:intergenic | 15.0% |
| !! | AATAGTATTATTCATGTAAT+TGG | - | tig0023857:62729-62748 | None:intergenic | 15.0% |
| !! | AATATAAGTTCTTTCTATAA+TGG | + | tig0023857:63337-63356 | Msa1411970:intron | 15.0% |
| !! | TTCAGTTAAGTTATTCAAAA+TGG | - | tig0023857:60459-60478 | None:intergenic | 20.0% |
| !! | TAACAGATTCAAAAATTGAA+GGG | - | tig0023857:60890-60909 | None:intergenic | 20.0% |
| !! | CTAATAATTTATCTGTGTTT+AGG | - | tig0023857:60953-60972 | None:intergenic | 20.0% |
| !! | AAATTTGACAGAAAACTAAT+TGG | + | tig0023857:61026-61045 | Msa1411970:intron | 20.0% |
| !! | ATAGAAATACACATATCAAA+AGG | - | tig0023857:61432-61451 | None:intergenic | 20.0% |
| !! | AATGAAAAAGAAAGCTATAT+CGG | - | tig0023857:61803-61822 | None:intergenic | 20.0% |
| !! | TATCTATATAGAATGCTAAA+AGG | + | tig0023857:61853-61872 | Msa1411970:intron | 20.0% |
| !! | ATCTATATAGAATGCTAAAA+GGG | + | tig0023857:61854-61873 | Msa1411970:intron | 20.0% |
| !! | ATAAGTAGCTTATAACAATT+TGG | - | tig0023857:62000-62019 | None:intergenic | 20.0% |
| !! | ATTGTTATAAGCTACTTATA+AGG | + | tig0023857:62001-62020 | Msa1411970:intron | 20.0% |
| !! | TTGTTATAAGCTACTTATAA+GGG | + | tig0023857:62002-62021 | Msa1411970:intron | 20.0% |
| !! | TCAATTCAAAATTATGATAC+TGG | - | tig0023857:62179-62198 | None:intergenic | 20.0% |
| !!! | CATAATTTTATTAATCGAGA+TGG | + | tig0023857:62209-62228 | Msa1411970:intron | 20.0% |
| !!! | ATGACTTTTATTAGTTGATA+AGG | + | tig0023857:62487-62506 | Msa1411970:intron | 20.0% |
| !! | AGAAAAAGTTGAAAAATGTT+AGG | + | tig0023857:62920-62939 | Msa1411970:intron | 20.0% |
| !! | GAAAAAGTTGAAAAATGTTA+GGG | + | tig0023857:62921-62940 | Msa1411970:intron | 20.0% |
| !!! | GTTTATGTTTTTTGTTTCAA+AGG | + | tig0023857:63200-63219 | Msa1411970:intron | 20.0% |
| !! | AGCAAATATATAAATGTTGT+GGG | + | tig0023857:63257-63276 | Msa1411970:intron | 20.0% |
| !! | TGAAATTTGATAACAGTTTC+TGG | - | tig0023857:60858-60877 | None:intergenic | 25.0% |
| ! | GTAACAGATTCAAAAATTGA+AGG | - | tig0023857:60891-60910 | None:intergenic | 25.0% |
| !! | TTCTTTTCTACATTTCAATG+AGG | - | tig0023857:60926-60945 | None:intergenic | 25.0% |
| !! | AATTCTACCTAAGAGTTTTA+AGG | + | tig0023857:61163-61182 | Msa1411970:intron | 25.0% |
| ! | AAGACGGATACTTTAATAAA+GGG | + | tig0023857:61304-61323 | Msa1411970:intron | 25.0% |
| ! | AATGCAAAATTGCTCTATTT+AGG | - | tig0023857:61368-61387 | None:intergenic | 25.0% |
| !! | TAAATAGAGCAATTTTGCAT+TGG | + | tig0023857:61367-61386 | Msa1411970:intron | 25.0% |
| !!! | TGAGATTTTTGGGTAAATTT+TGG | + | tig0023857:61951-61970 | Msa1411970:intron | 25.0% |
| ! | ATCTCATTAAAAACAAGAAC+TGG | - | tig0023857:62045-62064 | None:intergenic | 25.0% |
| ! | ATGAAACAATTTCAAAAGCT+AGG | - | tig0023857:62114-62133 | None:intergenic | 25.0% |
| ! | GTTGCTTATATGTATGAAAA+TGG | + | tig0023857:62146-62165 | Msa1411970:intron | 25.0% |
| !!! | GAATGTTTGCTGTATAAATT+TGG | + | tig0023857:62260-62279 | Msa1411970:intron | 25.0% |
| !! | TAAGATTGCTGTGTAAATTT+TGG | + | tig0023857:62283-62302 | Msa1411970:intron | 25.0% |
| !!! | ATCTTTTTTAGAGCATTTTG+AGG | - | tig0023857:62957-62976 | None:intergenic | 25.0% |
| ! | TTAATTAGAAGTTACCACTA+TGG | + | tig0023857:63129-63148 | Msa1411970:intron | 25.0% |
| ! | GAGCAAATATATAAATGTTG+TGG | + | tig0023857:63256-63275 | Msa1411970:intron | 25.0% |
| ! | ATAAGTTCTTTCTATAATGG+TGG | + | tig0023857:63340-63359 | Msa1411970:intron | 25.0% |
| ! | TGATGTTGTCAATATGATAT+TGG | + | tig0023857:63531-63550 | Msa1411970:intron | 25.0% |
| ! | GATGTTGTCAATATGATATT+GGG | + | tig0023857:63532-63551 | Msa1411970:intron | 25.0% |
| ! | GCTTCATATAGATACTAAAA+AGG | - | tig0023857:63589-63608 | None:intergenic | 25.0% |
| ! | AATAGAAGTTCTTTCTGTAA+TGG | + | tig0023857:63722-63741 | Msa1411970:intron | 25.0% |
| ! | ATAGAAGTTCTTTCTGTAAT+GGG | + | tig0023857:63723-63742 | Msa1411970:intron | 25.0% |
| !!! | TCAGTATTTTTTTCTTCTGT+AGG | - | tig0023857:64269-64288 | None:intergenic | 25.0% |
| ! | TTTCAATCCAAAAATAGAAC+CGG | - | tig0023857:64561-64580 | None:intergenic | 25.0% |
| TTGTTTGGTACAAGAAAGAA+AGG | - | tig0023857:60587-60606 | None:intergenic | 30.0% | |
| GAGAAATAAGGTAGATTTGA+TGG | - | tig0023857:60611-60630 | None:intergenic | 30.0% | |
| ACTACCTGAGTAGTATAAAT+AGG | + | tig0023857:60720-60739 | Msa1411970:intron | 30.0% | |
| CTACCTGAGTAGTATAAATA+GGG | + | tig0023857:60721-60740 | Msa1411970:intron | 30.0% | |
| TACCTGAGTAGTATAAATAG+GGG | + | tig0023857:60722-60741 | Msa1411970:intron | 30.0% | |
| TTGAATCTGTTACAATGAGT+CGG | + | tig0023857:60898-60917 | Msa1411970:intron | 30.0% | |
| GATAAATCTCTGCAATTACA+TGG | - | tig0023857:61110-61129 | None:intergenic | 30.0% | |
| AACATTGTAATGTTCCAACT+TGG | - | tig0023857:61193-61212 | None:intergenic | 30.0% | |
| CAAGACGGATACTTTAATAA+AGG | + | tig0023857:61303-61322 | Msa1411970:intron | 30.0% | |
| AAAATGCGAACATAGCAAAA+TGG | + | tig0023857:61520-61539 | Msa1411970:intron | 30.0% | |
| !!! | TCGTTTTTTTCTCTCTTTAG+TGG | - | tig0023857:61643-61662 | None:intergenic | 30.0% |
| TAAGAATCATGAAACAAACG+CGG | - | tig0023857:61832-61851 | None:intergenic | 30.0% | |
| !! | GGTAAATTTTGGTGTAGTTT+AGG | + | tig0023857:61962-61981 | Msa1411970:intron | 30.0% |
| ! | GTGTAGTTTAGGATTTAGAT+AGG | + | tig0023857:61973-61992 | Msa1411970:intron | 30.0% |
| !! | GTAAATTTTGGTAGCTTAGA+TGG | + | tig0023857:62295-62314 | Msa1411970:intron | 30.0% |
| ACAAGAAGCTTACAAAGATT+TGG | - | tig0023857:62323-62342 | None:intergenic | 30.0% | |
| !! | TCTTTGTAAGCTTCTTGTTT+TGG | + | tig0023857:62325-62344 | Msa1411970:intron | 30.0% |
| AACCCCAAAAAACAAAAGAT+AGG | + | tig0023857:62819-62838 | Msa1411970:intron | 30.0% | |
| ACCCCAAAAAACAAAAGATA+GGG | + | tig0023857:62820-62839 | Msa1411970:intron | 30.0% | |
| !!! | TCCCCTATCTTTTGTTTTTT+GGG | - | tig0023857:62825-62844 | None:intergenic | 30.0% |
| !!! | TTCCCCTATCTTTTGTTTTT+TGG | - | tig0023857:62826-62845 | None:intergenic | 30.0% |
| AACACACTCTTCTATCTTAT+GGG | - | tig0023857:62879-62898 | None:intergenic | 30.0% | |
| AAACACACTCTTCTATCTTA+TGG | - | tig0023857:62880-62899 | None:intergenic | 30.0% | |
| TTTGTCAGTGTCATCTTAAT+GGG | + | tig0023857:63227-63246 | Msa1411970:intron | 30.0% | |
| TTATGAATAAGCAACCCAAT+TGG | + | tig0023857:63429-63448 | Msa1411970:intron | 30.0% | |
| TAATATAATGTCCCACTTTG+TGG | + | tig0023857:63492-63511 | Msa1411970:intron | 30.0% | |
| AATATAATGTCCCACTTTGT+GGG | + | tig0023857:63493-63512 | Msa1411970:intron | 30.0% | |
| !! | TTTCTGAGCTGATTTTTAAC+AGG | + | tig0023857:63556-63575 | Msa1411970:intron | 30.0% |
| TAGAAGTTCTTTCTGTAATG+GGG | + | tig0023857:63724-63743 | Msa1411970:intron | 30.0% | |
| TTGGAGTAGATTTATTCTGT+TGG | - | tig0023857:63920-63939 | None:intergenic | 30.0% | |
| GATTGAAAATGAGGATAAGA+AGG | + | tig0023857:64199-64218 | Msa1411970:CDS | 30.0% | |
| !!! | GTATTTTTTTCTTCTGTAGG+AGG | - | tig0023857:64266-64285 | None:intergenic | 30.0% |
| AAATAGTGAAAGCAAGGATA+AGG | + | tig0023857:64307-64326 | Msa1411970:CDS | 30.0% | |
| GCTGTTGAAATGATTTGAAA+GGG | - | tig0023857:64430-64449 | None:intergenic | 30.0% | |
| AGCTGTTGAAATGATTTGAA+AGG | - | tig0023857:64431-64450 | None:intergenic | 30.0% | |
| !!! | TCTTCTTCCTTATTTTCCTT+CGG | + | tig0023857:64497-64516 | Msa1411970:CDS | 30.0% |
| TTAGATAAACCAAGACCTAA+AGG | - | tig0023857:64593-64612 | None:intergenic | 30.0% | |
| TATTTGTGAGCTTCATTTCA+GGG | - | tig0023857:64883-64902 | None:intergenic | 30.0% | |
| ATATTTGTGAGCTTCATTTC+AGG | - | tig0023857:64884-64903 | None:intergenic | 30.0% | |
| TGAAATGAAGCTCACAAATA+TGG | + | tig0023857:64883-64902 | Msa1411970:CDS | 30.0% | |
| TCAATGCAAATGTTGAAAGA+CGG | - | tig0023857:64952-64971 | None:intergenic | 30.0% | |
| TTTGCATTGAAGTTCAAAGA+TGG | + | tig0023857:64962-64981 | Msa1411970:CDS | 30.0% | |
| TTGCATTGAAGTTCAAAGAT+GGG | + | tig0023857:64963-64982 | Msa1411970:CDS | 30.0% | |
| GGGTTAATACTTGAATTGCT+TGG | + | tig0023857:60318-60337 | Msa1411970:intron | 35.0% | |
| !! | GGTAGATTTGATGGATTGTT+TGG | - | tig0023857:60602-60621 | None:intergenic | 35.0% |
| AGAGAAAGAGGTGAGAAATA+AGG | - | tig0023857:60623-60642 | None:intergenic | 35.0% | |
| GAAGTTGTGAAGAGAGAAAT+AGG | - | tig0023857:60665-60684 | None:intergenic | 35.0% | |
| GGTAGTAATGAAATCCTTCA+GGG | - | tig0023857:60706-60725 | None:intergenic | 35.0% | |
| AGGTAGTAATGAAATCCTTC+AGG | - | tig0023857:60707-60726 | None:intergenic | 35.0% | |
| ATCCCCTATTTATACTACTC+AGG | - | tig0023857:60727-60746 | None:intergenic | 35.0% | |
| AATTACATGGAGAGAATACG+TGG | - | tig0023857:61097-61116 | None:intergenic | 35.0% | |
| AATTCTCGTGAGACACAAAA+TGG | + | tig0023857:61134-61153 | Msa1411970:intron | 35.0% | |
| !!! | CTACCTAAGAGTTTTAAGGT+CGG | + | tig0023857:61167-61186 | Msa1411970:intron | 35.0% |
| AAATATACACCCGATATTCG+CGG | + | tig0023857:61261-61280 | Msa1411970:intron | 35.0% | |
| ! | AGATTTTATCCGCGAATATC+GGG | - | tig0023857:61273-61292 | None:intergenic | 35.0% |
| ! | CAGATTTTATCCGCGAATAT+CGG | - | tig0023857:61274-61293 | None:intergenic | 35.0% |
| !! | TCATGTTAACTTGTGCTCTT+AGG | + | tig0023857:61327-61346 | Msa1411970:intron | 35.0% |
| !! | CATGTTAACTTGTGCTCTTA+GGG | + | tig0023857:61328-61347 | Msa1411970:intron | 35.0% |
| ! | GAAACGTATTGGACACTTTT+CGG | - | tig0023857:61493-61512 | None:intergenic | 35.0% |
| AGAACACGTGAGAATATAGT+AGG | + | tig0023857:61552-61571 | Msa1411970:intron | 35.0% | |
| GAACACGTGAGAATATAGTA+GGG | + | tig0023857:61553-61572 | Msa1411970:intron | 35.0% | |
| GAGAAAGTAAATCTGAAGAC+AGG | + | tig0023857:61578-61597 | Msa1411970:intron | 35.0% | |
| ! | TTCTCTCTTTAGTGGATCAT+GGG | - | tig0023857:61635-61654 | None:intergenic | 35.0% |
| ! | TTTCTCTCTTTAGTGGATCA+TGG | - | tig0023857:61636-61655 | None:intergenic | 35.0% |
| !! | TGTAGCTCTTCGTTGTTTTA+GGG | - | tig0023857:61704-61723 | None:intergenic | 35.0% |
| !! | ATGTAGCTCTTCGTTGTTTT+AGG | - | tig0023857:61705-61724 | None:intergenic | 35.0% |
| ! | TTATGCGTTGCTGAGATTTT+TGG | + | tig0023857:61940-61959 | Msa1411970:intron | 35.0% |
| ! | TATGCGTTGCTGAGATTTTT+GGG | + | tig0023857:61941-61960 | Msa1411970:intron | 35.0% |
| !!! | TTGTAAGCTTCTTGTTTTGG+TGG | + | tig0023857:62328-62347 | Msa1411970:intron | 35.0% |
| GTGTATGTGTGTGTAACTTT+AGG | + | tig0023857:62394-62413 | Msa1411970:intron | 35.0% | |
| GAGTGACAGTGTAATAATGT+GGG | - | tig0023857:62443-62462 | None:intergenic | 35.0% | |
| TGAGTGACAGTGTAATAATG+TGG | - | tig0023857:62444-62463 | None:intergenic | 35.0% | |
| TAAGTTGTGAGCTGCTATAA+TGG | + | tig0023857:62599-62618 | Msa1411970:intron | 35.0% | |
| !! | TATACGCTATCTCACTTTTG+GGG | - | tig0023857:62656-62675 | None:intergenic | 35.0% |
| !! | CTATACGCTATCTCACTTTT+GGG | - | tig0023857:62657-62676 | None:intergenic | 35.0% |
| AAAAGTGAGATAGCGTATAG+CGG | + | tig0023857:62657-62676 | Msa1411970:intron | 35.0% | |
| TATAGCGGTATGACAAATAG+CGG | + | tig0023857:62672-62691 | Msa1411970:intron | 35.0% | |
| !!! | CCCCTATCTTTTGTTTTTTG+GGG | - | tig0023857:62824-62843 | None:intergenic | 35.0% |
| CCCCAAAAAACAAAAGATAG+GGG | + | tig0023857:62821-62840 | Msa1411970:intron | 35.0% | |
| !! | AGATAGAAGAGTGTGTTTTG+CGG | + | tig0023857:62882-62901 | Msa1411970:intron | 35.0% |
| !! | AGCTGCTACTTGATTTTAGT+AGG | - | tig0023857:63008-63027 | None:intergenic | 35.0% |
| CTTTGTCAGTGTCATCTTAA+TGG | + | tig0023857:63226-63245 | Msa1411970:intron | 35.0% | |
| GTGTCATCTTAATGGGATTT+CGG | + | tig0023857:63234-63253 | Msa1411970:intron | 35.0% | |
| AGAAGTTCTTTCTGTAATGG+GGG | + | tig0023857:63725-63744 | Msa1411970:intron | 35.0% | |
| CTTACAGTCGTCAAAGAAAA+GGG | + | tig0023857:63761-63780 | Msa1411970:CDS | 35.0% | |
| !! | TGTTACTTTGACCATTCTTC+TGG | - | tig0023857:63892-63911 | None:intergenic | 35.0% |
| TACTTCAAACAACGATGTTG+CGG | + | tig0023857:64085-64104 | Msa1411970:CDS | 35.0% | |
| GGTAGATAATGAACAGAGTA+AGG | + | tig0023857:64166-64185 | Msa1411970:CDS | 35.0% | |
| GATAATGAACAGAGTAAGGA+TGG | + | tig0023857:64170-64189 | Msa1411970:CDS | 35.0% | |
| TGGACGTAAGATTGAAAATG+AGG | + | tig0023857:64190-64209 | Msa1411970:CDS | 35.0% | |
| TAAGAAGGAAGTTGCTGATA+AGG | + | tig0023857:64214-64233 | Msa1411970:CDS | 35.0% | |
| ACTGAGAACAGTGATAAGAA+CGG | + | tig0023857:64284-64303 | Msa1411970:CDS | 35.0% | |
| AGACAAAGTAAGTGAAAGCA+AGG | + | tig0023857:64331-64350 | Msa1411970:CDS | 35.0% | |
| AGTAAGTGAAAGCAAGGATA+AGG | + | tig0023857:64337-64356 | Msa1411970:CDS | 35.0% | |
| AGTAAGCGAAAGCAAAGATA+AGG | + | tig0023857:64367-64386 | Msa1411970:CDS | 35.0% | |
| !!! | CTTCTTCCTTATTTTCCTTC+GGG | + | tig0023857:64498-64517 | Msa1411970:CDS | 35.0% |
| !! | AACAAATGATGGGTCTACTT+TGG | + | tig0023857:64526-64545 | Msa1411970:CDS | 35.0% |
| !! | ACAAATGATGGGTCTACTTT+GGG | + | tig0023857:64527-64546 | Msa1411970:CDS | 35.0% |
| GTGAAAGTGAATGTAACTAG+TGG | + | tig0023857:64785-64804 | Msa1411970:CDS | 35.0% | |
| AACTAGTGGAACAGAAAAGA+AGG | + | tig0023857:64799-64818 | Msa1411970:CDS | 35.0% | |
| AATTTCCCTTAGACCTCATA+AGG | - | tig0023857:64832-64851 | None:intergenic | 35.0% | |
| CTCACAAATATGGAGAAGAA+GGG | + | tig0023857:64893-64912 | Msa1411970:CDS | 35.0% | |
| GTTCCTAATCGTAAGCATAG+TGG | + | tig0023857:60386-60405 | Msa1411970:intron | 40.0% | |
| ACTCCACTATGCTTACGATT+AGG | - | tig0023857:60392-60411 | None:intergenic | 40.0% | |
| GAGTTTGAGAAGAGAGAAAG+AGG | - | tig0023857:60635-60654 | None:intergenic | 40.0% | |
| AATTTCCAACTCACAAGGAG+TGG | - | tig0023857:60834-60853 | None:intergenic | 40.0% | |
| CTGGAAATTTCCAACTCACA+AGG | - | tig0023857:60839-60858 | None:intergenic | 40.0% | |
| TTGTGTCTCACGAGAATTGA+AGG | - | tig0023857:61132-61151 | None:intergenic | 40.0% | |
| CACTGAACTATTCTTCTTCC+CGG | + | tig0023857:61738-61757 | Msa1411970:intron | 40.0% | |
| ! | TGAAGTTTCTCACCGTTTTC+CGG | - | tig0023857:61780-61799 | None:intergenic | 40.0% |
| ACATACACGCTAAAAAAGCG+CGG | - | tig0023857:62382-62401 | None:intergenic | 40.0% | |
| TGTCACTCATCCATATACGA+CGG | + | tig0023857:62455-62474 | Msa1411970:intron | 40.0% | |
| TCCATATACGACGGTATTAG+AGG | + | tig0023857:62464-62483 | Msa1411970:intron | 40.0% | |
| TCCTCTAATACCGTCGTATA+TGG | - | tig0023857:62468-62487 | None:intergenic | 40.0% | |
| ! | GCTATACGCTATCTCACTTT+TGG | - | tig0023857:62658-62677 | None:intergenic | 40.0% |
| AAATCAAGTAGCAGCTGAAG+CGG | + | tig0023857:63012-63031 | Msa1411970:intron | 40.0% | |
| ! | ATAAGCAACCCAATTGGCTT+TGG | + | tig0023857:63435-63454 | Msa1411970:intron | 40.0% |
| ACCAAGAACCAAAGCCAATT+GGG | - | tig0023857:63446-63465 | None:intergenic | 40.0% | |
| AACCAAGAACCAAAGCCAAT+TGG | - | tig0023857:63447-63466 | None:intergenic | 40.0% | |
| !! | ATTGGCTTTGGTTCTTGGTT+TGG | + | tig0023857:63447-63466 | Msa1411970:intron | 40.0% |
| ! | CAAACCTTTTCCCACAAAGT+GGG | - | tig0023857:63506-63525 | None:intergenic | 40.0% |
| ! | CCTTTTCTTTGACGACTGTA+AGG | - | tig0023857:63763-63782 | None:intergenic | 40.0% |
| CCTTACAGTCGTCAAAGAAA+AGG | + | tig0023857:63760-63779 | Msa1411970:CDS | 40.0% | |
| ! | TCTTCATCCTTAGCTTTCTC+TGG | - | tig0023857:64020-64039 | None:intergenic | 40.0% |
| !!! | AGGTTCTTTTTCGATCTCAC+TGG | - | tig0023857:64246-64265 | None:intergenic | 40.0% |
| GAACGGAAATAGTGAAAGCA+AGG | + | tig0023857:64301-64320 | Msa1411970:CDS | 40.0% | |
| AGCAATCAAAATGCCTTCAC+AGG | + | tig0023857:64455-64474 | Msa1411970:CDS | 40.0% | |
| TGTAGACCCGAAGGAAAATA+AGG | - | tig0023857:64507-64526 | None:intergenic | 40.0% | |
| !! | ATCATTTGTTGTAGACCCGA+AGG | - | tig0023857:64516-64535 | None:intergenic | 40.0% |
| TTCGGGTCTACAACAAATGA+TGG | + | tig0023857:64515-64534 | Msa1411970:CDS | 40.0% | |
| TCGGGTCTACAACAAATGAT+GGG | + | tig0023857:64516-64535 | Msa1411970:CDS | 40.0% | |
| ATAAACCAAGACCTAAAGGC+TGG | - | tig0023857:64589-64608 | None:intergenic | 40.0% | |
| TTATCTAACGCTGGAAGTTC+TGG | + | tig0023857:64605-64624 | Msa1411970:CDS | 40.0% | |
| !!! | AGTTCTGGTTTTGGAACATC+AGG | + | tig0023857:64620-64639 | Msa1411970:CDS | 40.0% |
| !! | GTGTTGTTTGAGTTTGCAGA+TGG | + | tig0023857:64734-64753 | Msa1411970:CDS | 40.0% |
| ! | TTGTTTGAGTTTGCAGATGG+AGG | + | tig0023857:64737-64756 | Msa1411970:CDS | 40.0% |
| GCTCACAAATATGGAGAAGA+AGG | + | tig0023857:64892-64911 | Msa1411970:CDS | 40.0% | |
| AGTCTTGAAATCCTCCACTA+TGG | - | tig0023857:64990-65009 | None:intergenic | 40.0% | |
| GAAATCCTTCAGGGTGTGTT+TGG | - | tig0023857:60697-60716 | None:intergenic | 45.0% | |
| ACTATCCACTCCTTGTGAGT+TGG | + | tig0023857:60826-60845 | Msa1411970:intron | 45.0% | |
| CTCGTGAGACACAAAATGGA+TGG | + | tig0023857:61138-61157 | Msa1411970:intron | 45.0% | |
| TGGCCGACCTTAAAACTCTT+AGG | - | tig0023857:61173-61192 | None:intergenic | 45.0% | |
| !!! | AGTTTTAAGGTCGGCCAAGT+TGG | + | tig0023857:61176-61195 | Msa1411970:intron | 45.0% |
| TTCGCGGATAAAATCTGTCC+CGG | + | tig0023857:61277-61296 | Msa1411970:intron | 45.0% | |
| ! | TAAAGTATCCGTCTTGTGCC+CGG | - | tig0023857:61299-61318 | None:intergenic | 45.0% |
| CACGTGAGAATATAGTAGGG+TGG | + | tig0023857:61556-61575 | Msa1411970:intron | 45.0% | |
| !! | CTTGAATGTGGATTGGGCTT+TGG | - | tig0023857:61612-61631 | None:intergenic | 45.0% |
| CATGGGCTTGAATGTGGATT+GGG | - | tig0023857:61618-61637 | None:intergenic | 45.0% | |
| TCATGGGCTTGAATGTGGAT+TGG | - | tig0023857:61619-61638 | None:intergenic | 45.0% | |
| ! | CATACACGCTAAAAAAGCGC+GGG | - | tig0023857:62381-62400 | None:intergenic | 45.0% |
| GCTGCTATAATGGTGAATCC+CGG | + | tig0023857:62609-62628 | Msa1411970:intron | 45.0% | |
| TAATGGTGAATCCCGGATAG+CGG | + | tig0023857:62616-62635 | Msa1411970:intron | 45.0% | |
| AGCGCTGCTATTGTCTACTA+TGG | + | tig0023857:63104-63123 | Msa1411970:intron | 45.0% | |
| CAGGCAAAACGAAACCATAG+TGG | - | tig0023857:63146-63165 | None:intergenic | 45.0% | |
| ! | TACAGCAACTTAGGAAGCAC+AGG | - | tig0023857:63165-63184 | None:intergenic | 45.0% |
| TGTGCTTCCTAAGTTGCTGT+AGG | + | tig0023857:63164-63183 | Msa1411970:intron | 45.0% | |
| AGAGAAGCCTACAGCAACTT+AGG | - | tig0023857:63174-63193 | None:intergenic | 45.0% | |
| !! | ACCCAATTGGCTTTGGTTCT+TGG | + | tig0023857:63442-63461 | Msa1411970:intron | 45.0% |
| !! | GCTTTGGTTCTTGGTTTGGA+TGG | + | tig0023857:63451-63470 | Msa1411970:intron | 45.0% |
| ATGTCCCACTTTGTGGGAAA+AGG | + | tig0023857:63499-63518 | Msa1411970:intron | 45.0% | |
| ! | CCAAACCTTTTCCCACAAAG+TGG | - | tig0023857:63507-63526 | None:intergenic | 45.0% |
| CCACTTTGTGGGAAAAGGTT+TGG | + | tig0023857:63504-63523 | Msa1411970:intron | 45.0% | |
| TCATCTTCCTCGTCGTCAAT+AGG | - | tig0023857:63816-63835 | None:intergenic | 45.0% | |
| !! | ACTGGCTTTCTTGAAAGTCC+CGG | - | tig0023857:63853-63872 | None:intergenic | 45.0% |
| GACTTTCAAGAAAGCCAGTG+AGG | + | tig0023857:63854-63873 | Msa1411970:CDS | 45.0% | |
| TTTCAAGAAAGCCAGTGAGG+AGG | + | tig0023857:63857-63876 | Msa1411970:CDS | 45.0% | |
| GGTTCTTGCAACCAGAAGAA+TGG | + | tig0023857:63878-63897 | Msa1411970:CDS | 45.0% | |
| AGTAGTAGCTTCACCAGACT+TGG | - | tig0023857:63988-64007 | None:intergenic | 45.0% | |
| GTAGATTTGTCCTCAACCTC+AGG | - | tig0023857:64068-64087 | None:intergenic | 45.0% | |
| ATGGGTCTACTTTGGGTAGT+GGG | + | tig0023857:64534-64553 | Msa1411970:CDS | 45.0% | |
| ! | AGTGGGTCCGGTTCTATTTT+TGG | + | tig0023857:64551-64570 | Msa1411970:CDS | 45.0% |
| TTGAAACCTGACCAGCCTTT+AGG | + | tig0023857:64575-64594 | Msa1411970:CDS | 45.0% | |
| GGTCTTGGTTTATCTAACGC+TGG | + | tig0023857:64596-64615 | Msa1411970:CDS | 45.0% | |
| !!! | AACGCTGGAAGTTCTGGTTT+TGG | + | tig0023857:64611-64630 | Msa1411970:CDS | 45.0% |
| TTCCAAGACTGAAACACTGC+AGG | + | tig0023857:64655-64674 | Msa1411970:CDS | 45.0% | |
| TTCCTGCAGTGTTTCAGTCT+TGG | - | tig0023857:64660-64679 | None:intergenic | 45.0% | |
| CAGGAAGTCGTTGTTGAAAC+CGG | + | tig0023857:64674-64693 | Msa1411970:CDS | 45.0% | |
| TGAAACCGGTGAAGAAAACG+AGG | + | tig0023857:64688-64707 | Msa1411970:CDS | 45.0% | |
| ! | CACTTCCTCGTTTTCTTCAC+CGG | - | tig0023857:64696-64715 | None:intergenic | 45.0% |
| TTGAGTTTGCAGATGGAGGT+TGG | + | tig0023857:64741-64760 | Msa1411970:CDS | 45.0% | |
| CTTAGACCTCATAAGGACTC+GGG | - | tig0023857:64825-64844 | None:intergenic | 45.0% | |
| CCTTAGACCTCATAAGGACT+CGG | - | tig0023857:64826-64845 | None:intergenic | 45.0% | |
| CGAGTCCTTATGAGGTCTAA+GGG | + | tig0023857:64824-64843 | Msa1411970:CDS | 45.0% | |
| GTTCAAAGATGGGTCCATAG+TGG | + | tig0023857:64973-64992 | Msa1411970:CDS | 45.0% | |
| ACTGCTATCACAGCACACAA+GGG | + | tig0023857:65007-65026 | Msa1411970:CDS | 45.0% | |
| !!! | TAAAAAAGATTTTAAAAATA+GGG | + | tig0023857:62967-62986 | Msa1411970:intron | 5.0% |
| CAGCTGAGCTGATGCATCAA+TGG | + | tig0023857:60413-60432 | Msa1411970:intron | 50.0% | |
| CTACACCAAACACACCCTGA+AGG | + | tig0023857:60689-60708 | Msa1411970:intron | 50.0% | |
| TCGCGGATAAAATCTGTCCC+GGG | + | tig0023857:61278-61297 | Msa1411970:intron | 50.0% | |
| ! | AAAGTATCCGTCTTGTGCCC+GGG | - | tig0023857:61298-61317 | None:intergenic | 50.0% |
| GTGGATCATGGGCTTGAATG+TGG | - | tig0023857:61624-61643 | None:intergenic | 50.0% | |
| TTCTTCCCGGAATCGCTCTT+CGG | + | tig0023857:61751-61770 | Msa1411970:intron | 50.0% | |
| ! | AGTTTCTCACCGTTTTCCGG+TGG | - | tig0023857:61777-61796 | None:intergenic | 50.0% |
| !! | AAGAGTGTGTTTTGCGGCAC+AGG | + | tig0023857:62888-62907 | Msa1411970:intron | 50.0% |
| AGCGGCGCAGAATCAAATAG+CGG | - | tig0023857:63038-63057 | None:intergenic | 50.0% | |
| TCGTCAAAGAAAAGGGCTGC+TGG | + | tig0023857:63768-63787 | Msa1411970:CDS | 50.0% | |
| CGTCAAAGAAAAGGGCTGCT+GGG | + | tig0023857:63769-63788 | Msa1411970:CDS | 50.0% | |
| !! | GTCGTCAATAGGAGTGTCTC+GGG | - | tig0023857:63805-63824 | None:intergenic | 50.0% |
| !! | CGTCGTCAATAGGAGTGTCT+CGG | - | tig0023857:63806-63825 | None:intergenic | 50.0% |
| AGACACTCCTATTGACGACG+AGG | + | tig0023857:63806-63825 | Msa1411970:CDS | 50.0% | |
| CTTGAAAGTCCCGGCTTCAA+GGG | - | tig0023857:63844-63863 | None:intergenic | 50.0% | |
| TCTTGAAAGTCCCGGCTTCA+AGG | - | tig0023857:63845-63864 | None:intergenic | 50.0% | |
| TCTACTCCAAACCCTTTCGC+TGG | + | tig0023857:63930-63949 | Msa1411970:CDS | 50.0% | |
| CGTATACCAGCGAAAGGGTT+TGG | - | tig0023857:63939-63958 | None:intergenic | 50.0% | |
| GCAAGCGTATACCAGCGAAA+GGG | - | tig0023857:63944-63963 | None:intergenic | 50.0% | |
| ! | GACTTGGCAGTGGATTCAGT+AGG | - | tig0023857:63972-63991 | None:intergenic | 50.0% |
| ACTGAATCCACTGCCAAGTC+TGG | + | tig0023857:63972-63991 | Msa1411970:CDS | 50.0% | |
| AACGCAGCCAGAGAAAGCTA+AGG | + | tig0023857:64010-64029 | Msa1411970:CDS | 50.0% | |
| GTTGCGGACAGAAACAATGC+AGG | + | tig0023857:64101-64120 | Msa1411970:CDS | 50.0% | |
| GGACAGAAACAATGCAGGCA+AGG | + | tig0023857:64106-64125 | Msa1411970:CDS | 50.0% | |
| GAGCGACAGTGACAACTCTA+AGG | + | tig0023857:64145-64164 | Msa1411970:CDS | 50.0% | |
| AATGCCTTCACAGGTCTTGC+TGG | + | tig0023857:64464-64483 | Msa1411970:CDS | 50.0% | |
| ATGCCTTCACAGGTCTTGCT+GGG | + | tig0023857:64465-64484 | Msa1411970:CDS | 50.0% | |
| GATGGGTCTACTTTGGGTAG+TGG | + | tig0023857:64533-64552 | Msa1411970:CDS | 50.0% | |
| !! | TCTACTTTGGGTAGTGGGTC+CGG | + | tig0023857:64539-64558 | Msa1411970:CDS | 50.0% |
| CGGTGAAGAAAACGAGGAAG+TGG | + | tig0023857:64694-64713 | Msa1411970:CDS | 50.0% | |
| GTTTGCAGATGGAGGTTGGA+AGG | + | tig0023857:64745-64764 | Msa1411970:CDS | 50.0% | |
| AGGTTGGAAGGAACGTGGAA+AGG | + | tig0023857:64757-64776 | Msa1411970:CDS | 50.0% | |
| GGTTGGAAGGAACGTGGAAA+GGG | + | tig0023857:64758-64777 | Msa1411970:CDS | 50.0% | |
| CCGAGTCCTTATGAGGTCTA+AGG | + | tig0023857:64823-64842 | Msa1411970:CDS | 50.0% | |
| ! | ACCTTTGCATGTGCCACTGA+AGG | + | tig0023857:64920-64939 | Msa1411970:CDS | 50.0% |
| ! | CCTTTGCATGTGCCACTGAA+GGG | + | tig0023857:64921-64940 | Msa1411970:CDS | 50.0% |
| AAGACGGTCTTTCCCTTCAG+TGG | - | tig0023857:64936-64955 | None:intergenic | 50.0% | |
| CAAAGATGGGTCCATAGTGG+AGG | + | tig0023857:64976-64995 | Msa1411970:CDS | 50.0% | |
| GACTGCTATCACAGCACACA+AGG | + | tig0023857:65006-65025 | Msa1411970:CDS | 50.0% | |
| CTATCACAGCACACAAGGGT+GGG | + | tig0023857:65011-65030 | Msa1411970:CDS | 50.0% | |
| TATCACAGCACACAAGGGTG+GGG | + | tig0023857:65012-65031 | Msa1411970:CDS | 50.0% | |
| AATCTGTCCCGGGCACAAGA+CGG | + | tig0023857:61288-61307 | Msa1411970:intron | 55.0% | |
| CGCTACACTGATCGTCGTAG+CGG | - | tig0023857:63056-63075 | None:intergenic | 55.0% | |
| CGCTACGACGATCAGTGTAG+CGG | + | tig0023857:63054-63073 | Msa1411970:intron | 55.0% | |
| GGTTGCAAGAACCTCCTCAC+TGG | - | tig0023857:63871-63890 | None:intergenic | 55.0% | |
| GGCAAGCGTATACCAGCGAA+AGG | - | tig0023857:63945-63964 | None:intergenic | 55.0% | |
| ! | GCAGTGGATTCAGTAGGAGC+AGG | - | tig0023857:63966-63985 | None:intergenic | 55.0% |
| AGCTTCACCAGACTTGGCAG+TGG | - | tig0023857:63982-64001 | None:intergenic | 55.0% | |
| ACCTCAGGAGCTTTGCTCTC+TGG | - | tig0023857:64053-64072 | None:intergenic | 55.0% | |
| GAGCAAAGCTCCTGAGGTTG+AGG | + | tig0023857:64055-64074 | Msa1411970:CDS | 55.0% | |
| CAATGCAGGCAAGGAGCTTG+CGG | + | tig0023857:64115-64134 | Msa1411970:CDS | 55.0% | |
| AGTGACGAGCCTACTGCTGA+AGG | + | tig0023857:64401-64420 | Msa1411970:CDS | 55.0% | |
| AAAGGGCCACCTTCAGCAGT+AGG | - | tig0023857:64413-64432 | None:intergenic | 55.0% | |
| AGACCCAGCAAGACCTGTGA+AGG | - | tig0023857:64471-64490 | None:intergenic | 55.0% | |
| TTCACAGGTCTTGCTGGGTC+TGG | + | tig0023857:64470-64489 | Msa1411970:CDS | 55.0% | |
| ! | CCAAGACCTAAAGGCTGGTC+AGG | - | tig0023857:64584-64603 | None:intergenic | 55.0% |
| CCTGACCAGCCTTTAGGTCT+TGG | + | tig0023857:64581-64600 | Msa1411970:CDS | 55.0% | |
| GATGGAGGTTGGAAGGAACG+TGG | + | tig0023857:64752-64771 | Msa1411970:CDS | 55.0% | |
| AGAAGGCCCGAGTCCTTATG+AGG | + | tig0023857:64816-64835 | Msa1411970:CDS | 55.0% | |
| CCCTTCAGTGGCACATGCAA+AGG | - | tig0023857:64924-64943 | None:intergenic | 55.0% | |
| GCTATCACAGCACACAAGGG+TGG | + | tig0023857:65010-65029 | Msa1411970:CDS | 55.0% | |
| GACTCCAGAGAACTCTCCCA+AGG | + | tig0023857:65051-65070 | Msa1411970:CDS | 55.0% | |
| GAAGCCTTGGGAGAGTTCTC+TGG | - | tig0023857:65058-65077 | None:intergenic | 55.0% | |
| GCTCTTCGGCCACCGGAAAA+CGG | + | tig0023857:61765-61784 | Msa1411970:intron | 60.0% | |
| GCTATAGCTGCCGTGCGTAG+CGG | - | tig0023857:63087-63106 | None:intergenic | 60.0% | |
| GATGACGCTGCCCTTGAAGC+CGG | + | tig0023857:63831-63850 | Msa1411970:CDS | 60.0% | |
| ATGACGCTGCCCTTGAAGCC+GGG | + | tig0023857:63832-63851 | Msa1411970:CDS | 60.0% | |
| GCCAGAGAGCAAAGCTCCTG+AGG | + | tig0023857:64049-64068 | Msa1411970:CDS | 60.0% | |
| AGGCAAGGAGCTTGCGGAGA+AGG | + | tig0023857:64121-64140 | Msa1411970:CDS | 60.0% | |
| GACGAGCCTACTGCTGAAGG+TGG | + | tig0023857:64404-64423 | Msa1411970:CDS | 60.0% | |
| GGTGGCCGAAGAGCGATTCC+GGG | - | tig0023857:61759-61778 | None:intergenic | 65.0% | |
| CGGTGGCCGAAGAGCGATTC+CGG | - | tig0023857:61760-61779 | None:intergenic | 65.0% | |
| CGGAATCGCTCTTCGGCCAC+CGG | + | tig0023857:61758-61777 | Msa1411970:intron | 65.0% | |
| ! | TCCCGGATAGCGGTGCGTAG+CGG | + | tig0023857:62626-62645 | Msa1411970:intron | 65.0% |
| ACCGCTACGCACCGCTATCC+GGG | - | tig0023857:62630-62649 | None:intergenic | 65.0% | |
| GACCGCTACGCACCGCTATC+CGG | - | tig0023857:62631-62650 | None:intergenic | 65.0% | |
| CGGTTCGTCGCCGCTACGCA+CGG | + | tig0023857:63074-63093 | Msa1411970:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023857 | gene | 60316 | 65087 | 60316 | ID=Msa1411970;Name=Msa1411970 |
| tig0023857 | mRNA | 60316 | 65087 | 60316 | ID=Msa1411970-mRNA-1;Parent=Msa1411970;Name=Msa1411970-mRNA-1;_AED=0.08;_eAED=0.09;_QI=0|0|0|0.5|0|0|2|0|454 |
| tig0023857 | exon | 60316 | 60319 | 60316 | ID=Msa1411970-mRNA-1:exon:20405;Parent=Msa1411970-mRNA-1 |
| tig0023857 | exon | 63727 | 65087 | 63727 | ID=Msa1411970-mRNA-1:exon:20406;Parent=Msa1411970-mRNA-1 |
| tig0023857 | CDS | 60316 | 60319 | 60316 | ID=Msa1411970-mRNA-1:cds;Parent=Msa1411970-mRNA-1 |
| tig0023857 | CDS | 63727 | 65087 | 63727 | ID=Msa1411970-mRNA-1:cds;Parent=Msa1411970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
