Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628410 | XP_013454739.1 | 93.973 | 448 | 16 | 2 | 1 | 448 | 1 | 437 | 0.0 | 823 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628410 | sp|Q9C829|NU50A_ARATH | 46.170 | 470 | 199 | 14 | 1 | 447 | 1 | 439 | 2.30e-103 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628410 | A0A072USC3 | 93.973 | 448 | 16 | 2 | 1 | 448 | 1 | 437 | 0.0 | 823 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0626630 | Msa0628410 | 0.806157 | 9.427384e-50 | -8.615850e-47 |
| Msa0626950 | Msa0628410 | 0.802168 | 6.375336e-49 | -8.615850e-47 |
| Msa0627380 | Msa0628410 | 0.815697 | 8.093479e-52 | -8.615850e-47 |
| Msa0628410 | Msa0642160 | 0.800045 | 1.732722e-48 | -8.615850e-47 |
| Msa0628410 | Msa0664750 | 0.808919 | 2.444471e-50 | -8.615850e-47 |
| Msa0628410 | Msa0665100 | 0.836314 | 1.006073e-56 | -8.615850e-47 |
| Msa0628410 | Msa0698780 | 0.801312 | 9.555839e-49 | -8.615850e-47 |
| Msa0628410 | Msa1021470 | 0.802209 | 6.252143e-49 | -8.615850e-47 |
| Msa0628410 | Msa1123770 | 0.810055 | 1.394100e-50 | -8.615850e-47 |
| Msa0628410 | Msa1169910 | 0.813381 | 2.634174e-51 | -8.615850e-47 |
| Msa0628410 | Msa1277260 | 0.807840 | 4.153354e-50 | -8.615850e-47 |
| Msa0628410 | Msa1300620 | 0.830402 | 2.997643e-55 | -8.615850e-47 |
| Msa0628410 | Msa1315890 | 0.805450 | 1.326896e-49 | -8.615850e-47 |
| Msa0628410 | Msa1329730 | 0.810461 | 1.139804e-50 | -8.615850e-47 |
| Msa0628410 | Msa1385720 | 0.813384 | 2.630819e-51 | -8.615850e-47 |
| Msa0628410 | Msa1411970 | 0.933406 | 1.969728e-95 | -8.615850e-47 |
| Msa0628410 | Msa1434090 | 0.810488 | 1.124208e-50 | -8.615850e-47 |
| Msa0343500 | Msa0628410 | 0.817094 | 3.940625e-52 | -8.615850e-47 |
| Msa0531230 | Msa0628410 | 0.886355 | 3.674805e-72 | -8.615850e-47 |
| Msa0578140 | Msa0628410 | 0.825317 | 5.006728e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628410 | MtrunA17_Chr4g0004231 | 93.973 | 448 | 16 | 2 | 1 | 448 | 1 | 437 | 0.0 | 823 |
| Msa0628410 | MtrunA17_Chr1g0210671 | 76.136 | 88 | 19 | 1 | 1 | 86 | 25 | 112 | 7.10e-29 | 112 |
| Msa0628410 | MtrunA17_Chr3g0089741 | 72.917 | 48 | 13 | 0 | 1 | 48 | 1 | 48 | 1.12e-15 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0628410 | AT1G52380.3 | 46.170 | 470 | 199 | 14 | 1 | 447 | 1 | 439 | 2.34e-104 | 317 |
| Msa0628410 | AT1G52380.2 | 46.170 | 470 | 199 | 14 | 1 | 447 | 1 | 439 | 2.34e-104 | 317 |
| Msa0628410 | AT1G52380.1 | 46.170 | 470 | 199 | 14 | 1 | 447 | 1 | 439 | 2.34e-104 | 317 |
| Msa0628410 | AT1G52380.4 | 46.170 | 470 | 199 | 14 | 1 | 447 | 1 | 439 | 2.34e-104 | 317 |
| Msa0628410 | AT3G15970.2 | 42.562 | 484 | 221 | 14 | 1 | 447 | 1 | 464 | 6.87e-92 | 286 |
| Msa0628410 | AT3G15970.1 | 42.562 | 484 | 221 | 14 | 1 | 447 | 1 | 464 | 6.87e-92 | 286 |
Find 122 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACAGGTCTTGCTGGGTC+TGG | 0.282996 | 4_3:-9047394 | Msa0628410:CDS |
| TGAAATGAAGCTCACAAATA+TGG | 0.293632 | 4_3:-9046981 | Msa0628410:CDS |
| ATATTTGTGAGCTTCATTTC+AGG | 0.313432 | 4_3:+9046983 | None:intergenic |
| CCGAGTCCTTATGAGGTCTA+AGG | 0.316914 | 4_3:-9047041 | Msa0628410:CDS |
| TTATCTAACGCTGGAAGTTC+TGG | 0.321462 | 4_3:-9047259 | Msa0628410:CDS |
| TTGAAACCTGACCAGCCTTT+AGG | 0.324636 | 4_3:-9047289 | Msa0628410:CDS |
| TAAGAAGGAAGTTGCTGATA+AGG | 0.332879 | 4_3:-9047650 | Msa0628410:CDS |
| TGTTACTTTGACCATTCTTC+TGG | 0.332895 | 4_3:+9047975 | None:intergenic |
| AACGCTGGAAGTTCTGGTTT+TGG | 0.337784 | 4_3:-9047253 | Msa0628410:CDS |
| AATGCCTTCACAGGTCTTGC+TGG | 0.338943 | 4_3:-9047400 | Msa0628410:CDS |
| CCTGACCAGCCTTTAGGTCT+TGG | 0.361060 | 4_3:-9047283 | Msa0628410:CDS |
| TCATCTTCCTCGTCGTCAAT+AGG | 0.362423 | 4_3:+9048051 | None:intergenic |
| ACCTCAGGAGCTTTGCTCTC+TGG | 0.367425 | 4_3:+9047814 | None:intergenic |
| TGTAGACCCGAAGGAAAATA+AGG | 0.369166 | 4_3:+9047360 | None:intergenic |
| TCTTCATCCTTAGCTTTCTC+TGG | 0.371345 | 4_3:+9047847 | None:intergenic |
| AACAAATGATGGGTCTACTT+TGG | 0.384601 | 4_3:-9047338 | Msa0628410:CDS |
| CGTATACCAGCGAAAGGGTT+TGG | 0.386213 | 4_3:+9047928 | None:intergenic |
| GAAGCCTTGGGAGAGTTCTC+TGG | 0.387453 | 4_3:+9046809 | None:intergenic |
| TCTACTTTGGGTAGTGGGTC+CGG | 0.396921 | 4_3:-9047325 | Msa0628410:CDS |
| TCTTGAAAGTCCCGGCTTCA+AGG | 0.403876 | 4_3:+9048022 | None:intergenic |
| TTCCTGCAGTGTTTCAGTCT+TGG | 0.406473 | 4_3:+9047207 | None:intergenic |
| GAGCGACAGTGACAACTCTA+AGG | 0.408430 | 4_3:-9047719 | Msa0628410:CDS |
| AATTTCCCTTAGACCTCATA+AGG | 0.415992 | 4_3:+9047035 | None:intergenic |
| AGCTCAAACATCAGAAGCCT+TGG | 0.417787 | 4_3:+9046796 | None:intergenic |
| CCTTACAGTCGTCAAAGAAA+AGG | 0.420646 | 4_3:-9048104 | Msa0628410:CDS |
| CCAAGACCTAAAGGCTGGTC+AGG | 0.423398 | 4_3:+9047283 | None:intergenic |
| ACAAATGATGGGTCTACTTT+GGG | 0.423993 | 4_3:-9047337 | Msa0628410:CDS |
| GGTTGGAAGGAACGTGGAAA+GGG | 0.429315 | 4_3:-9047106 | Msa0628410:CDS |
| TTTGCATTGAAGTTCAAAGA+TGG | 0.435158 | 4_3:-9046902 | Msa0628410:CDS |
| ACTGAATCCACTGCCAAGTC+TGG | 0.437172 | 4_3:-9047892 | Msa0628410:CDS |
| TATTTGTGAGCTTCATTTCA+GGG | 0.440319 | 4_3:+9046984 | None:intergenic |
| TTCGGGTCTACAACAAATGA+TGG | 0.442733 | 4_3:-9047349 | Msa0628410:CDS |
| CCTTAGACCTCATAAGGACT+CGG | 0.444298 | 4_3:+9047041 | None:intergenic |
| GAGCAAAGCTCCTGAGGTTG+AGG | 0.446588 | 4_3:-9047809 | Msa0628410:CDS |
| GATCGAAAATGAGGATAAGA+AGG | 0.449298 | 4_3:-9047665 | Msa0628410:CDS |
| AGGCAAGGAGCTTGCGGAGA+AGG | 0.452508 | 4_3:-9047743 | Msa0628410:CDS |
| GGTAGATAATGAACAGAGTA+AGG | 0.452713 | 4_3:-9047698 | Msa0628410:CDS |
| TCGTCAAAGAAAAGGGCTGC+TGG | 0.453932 | 4_3:-9048096 | Msa0628410:CDS |
| AGTAAGTGAAAGCAAGGATA+AGG | 0.460546 | 4_3:-9047527 | Msa0628410:CDS |
| CAGGAAGTCGTTGTTGAAAC+CGG | 0.466180 | 4_3:-9047190 | Msa0628410:CDS |
| GCTCACAAATATGGAGAAGA+AGG | 0.474042 | 4_3:-9046972 | Msa0628410:CDS |
| ATGACGCTGCCCTTGAAGCC+GGG | 0.474337 | 4_3:-9048032 | Msa0628410:CDS |
| GATGACGCTGCCCTTGAAGC+CGG | 0.476093 | 4_3:-9048033 | Msa0628410:CDS |
| ATGGGTCTACTTTGGGTAGT+GGG | 0.480263 | 4_3:-9047330 | Msa0628410:CDS |
| ACTGGCTTTCTTGAAAGTCC+CGG | 0.480603 | 4_3:+9048014 | None:intergenic |
| AGTAGTAGCTTCACCAGACT+TGG | 0.481005 | 4_3:+9047879 | None:intergenic |
| GGTTGCAAGAACCTCCTCAC+TGG | 0.485123 | 4_3:+9047996 | None:intergenic |
| AAATAGTGAAAGCAAGGATA+AGG | 0.486758 | 4_3:-9047557 | Msa0628410:CDS |
| CCCTTCAGTGGCACATGCAA+AGG | 0.487875 | 4_3:+9046943 | None:intergenic |
| AGGTTGGAAGGAACGTGGAA+AGG | 0.496279 | 4_3:-9047107 | Msa0628410:CDS |
| CGTCGTCAATAGGAGTGTCT+CGG | 0.502212 | 4_3:+9048061 | None:intergenic |
| GCTGTTGAAATGATTTGAAA+GGG | 0.504844 | 4_3:+9047437 | None:intergenic |
| CTTACAGTCGTCAAAGAAAA+GGG | 0.505584 | 4_3:-9048103 | Msa0628410:CDS |
| GATGGGTCTACTTTGGGTAG+TGG | 0.506943 | 4_3:-9047331 | Msa0628410:CDS |
| TTGCATTGAAGTTCAAAGAT+GGG | 0.509535 | 4_3:-9046901 | Msa0628410:CDS |
| AGTCTTGAAATCCTCCACTA+TGG | 0.509950 | 4_3:+9046877 | None:intergenic |
| TTGGAGTAGATTTATTCTGT+TGG | 0.517375 | 4_3:+9047947 | None:intergenic |
| TTGAGTTTGCAGATGGAGGT+TGG | 0.519670 | 4_3:-9047123 | Msa0628410:CDS |
| TTAGATAAACCAAGACCTAA+AGG | 0.521590 | 4_3:+9047274 | None:intergenic |
| AGTAAGCGAAAGCAAAGATA+AGG | 0.521711 | 4_3:-9047497 | Msa0628410:CDS |
| TTGTTTGAGTTTGCAGATGG+AGG | 0.522768 | 4_3:-9047127 | Msa0628410:CDS |
| GTAGATTTGTCCTCAACCTC+AGG | 0.523191 | 4_3:+9047799 | None:intergenic |
| ATGCCTTCACAGGTCTTGCT+GGG | 0.525899 | 4_3:-9047399 | Msa0628410:CDS |
| GTCGTCAATAGGAGTGTCTC+GGG | 0.531300 | 4_3:+9048062 | None:intergenic |
| GTGTTGTTTGAGTTTGCAGA+TGG | 0.533735 | 4_3:-9047130 | Msa0628410:CDS |
| CGGTGAAGAAAACGAGGAAG+TGG | 0.537379 | 4_3:-9047170 | Msa0628410:CDS |
| CTTGAAAGTCCCGGCTTCAA+GGG | 0.539539 | 4_3:+9048023 | None:intergenic |
| AGCTGTTGAAATGATTTGAA+AGG | 0.539560 | 4_3:+9047436 | None:intergenic |
| CTATCACAGCACACAAGGGT+GGG | 0.539717 | 4_3:-9046853 | Msa0628410:CDS |
| GTTTGCAGATGGAGGTTGGA+AGG | 0.542312 | 4_3:-9047119 | Msa0628410:CDS |
| GCTCAAACATCAGAAGCCTT+GGG | 0.542932 | 4_3:+9046797 | None:intergenic |
| GGTTCTTGCAACCAGAAGAA+TGG | 0.542934 | 4_3:-9047986 | Msa0628410:CDS |
| AGACAAAGTAAGTGAAAGCA+AGG | 0.543217 | 4_3:-9047533 | Msa0628410:CDS |
| GATAATGAACAGAGTAAGGA+TGG | 0.544320 | 4_3:-9047694 | Msa0628410:CDS |
| AAAGGGCCACCTTCAGCAGT+AGG | 0.547591 | 4_3:+9047454 | None:intergenic |
| AGCAATCAAAATGCCTTCAC+AGG | 0.548375 | 4_3:-9047409 | Msa0628410:CDS |
| ATAAACCAAGACCTAAAGGC+TGG | 0.555593 | 4_3:+9047278 | None:intergenic |
| AGCTTCACCAGACTTGGCAG+TGG | 0.560811 | 4_3:+9047885 | None:intergenic |
| AACTAGTGGAACAGAAAAGA+AGG | 0.562452 | 4_3:-9047065 | Msa0628410:CDS |
| GCCAGAGAGCAAAGCTCCTG+AGG | 0.563576 | 4_3:-9047815 | Msa0628410:CDS |
| TTCCAAGACTGAAACACTGC+AGG | 0.563759 | 4_3:-9047209 | Msa0628410:CDS |
| GCAGTGGATTCAGTAGGAGC+AGG | 0.564389 | 4_3:+9047901 | None:intergenic |
| CGTCAAAGAAAAGGGCTGCT+GGG | 0.566029 | 4_3:-9048095 | Msa0628410:CDS |
| CGAGTCCTTATGAGGTCTAA+GGG | 0.566826 | 4_3:-9047040 | Msa0628410:CDS |
| CAATGCAGGCAAGGAGCTTG+CGG | 0.566828 | 4_3:-9047749 | Msa0628410:CDS |
| AAGACGGTCTTTCCCTTCAG+TGG | 0.567228 | 4_3:+9046931 | None:intergenic |
| TCTACTCCAAACCCTTTCGC+TGG | 0.571206 | 4_3:-9047934 | Msa0628410:CDS |
| AGAAGGCCCGAGTCCTTATG+AGG | 0.572817 | 4_3:-9047048 | Msa0628410:CDS |
| GGCAAGCGTATACCAGCGAA+AGG | 0.572904 | 4_3:+9047922 | None:intergenic |
| GACTGCTATCACAGCACACA+AGG | 0.572911 | 4_3:-9046858 | Msa0628410:CDS |
| TGGACGTAAGATCGAAAATG+AGG | 0.575065 | 4_3:-9047674 | Msa0628410:CDS |
| CCTTTGCATGTGCCACTGAA+GGG | 0.575965 | 4_3:-9046943 | Msa0628410:CDS |
| GAACGGAAATAGTGAAAGCA+AGG | 0.577253 | 4_3:-9047563 | Msa0628410:CDS |
| ACCTTTGCATGTGCCACTGA+AGG | 0.579423 | 4_3:-9046944 | Msa0628410:CDS |
| AGACCCAGCAAGACCTGTGA+AGG | 0.582987 | 4_3:+9047396 | None:intergenic |
| GTTCAAAGATGGGTCCATAG+TGG | 0.583030 | 4_3:-9046891 | Msa0628410:CDS |
| GTGAAAGTGAATGTAACTAG+TGG | 0.595453 | 4_3:-9047079 | Msa0628410:CDS |
| TACTTCAAACAACGATGTTG+CGG | 0.596477 | 4_3:-9047779 | Msa0628410:CDS |
| GGTCTTGGTTTATCTAACGC+TGG | 0.598167 | 4_3:-9047268 | Msa0628410:CDS |
| AGTGACGAGCCTACTGCTGA+AGG | 0.599077 | 4_3:-9047463 | Msa0628410:CDS |
| CTTAGACCTCATAAGGACTC+GGG | 0.601169 | 4_3:+9047042 | None:intergenic |
| GGACAGAAACAATGCAGGCA+AGG | 0.604459 | 4_3:-9047758 | Msa0628410:CDS |
| ATCATTTGTTGTAGACCCGA+AGG | 0.607405 | 4_3:+9047351 | None:intergenic |
| TATCACAGCACACAAGGGTG+GGG | 0.607843 | 4_3:-9046852 | Msa0628410:CDS |
| TCAATGCAAATGTTGAAAGA+CGG | 0.609075 | 4_3:+9046915 | None:intergenic |
| GCTATCACAGCACACAAGGG+TGG | 0.614339 | 4_3:-9046854 | Msa0628410:CDS |
| TCGGGTCTACAACAAATGAT+GGG | 0.616965 | 4_3:-9047348 | Msa0628410:CDS |
| GACGAGCCTACTGCTGAAGG+TGG | 0.621305 | 4_3:-9047460 | Msa0628410:CDS |
| GTTGCGGACAGAAACAATGC+AGG | 0.625399 | 4_3:-9047763 | Msa0628410:CDS |
| CTCACAAATATGGAGAAGAA+GGG | 0.630174 | 4_3:-9046971 | Msa0628410:CDS |
| GACTCCAGAGAACTCTCCCA+AGG | 0.630564 | 4_3:-9046813 | Msa0628410:CDS |
| AACGCAGCCAGAGAAAGCTA+AGG | 0.639096 | 4_3:-9047854 | Msa0628410:CDS |
| CAAAGATGGGTCCATAGTGG+AGG | 0.639977 | 4_3:-9046888 | Msa0628410:CDS |
| GCAAGCGTATACCAGCGAAA+GGG | 0.643938 | 4_3:+9047923 | None:intergenic |
| TTTCAAGAAAGCCAGTGAGG+AGG | 0.650952 | 4_3:-9048007 | Msa0628410:CDS |
| ACTGAGAACAGTGATAAGAA+CGG | 0.660347 | 4_3:-9047580 | Msa0628410:CDS |
| GACTTTCAAGAAAGCCAGTG+AGG | 0.667433 | 4_3:-9048010 | Msa0628410:CDS |
| GATGGAGGTTGGAAGGAACG+TGG | 0.668623 | 4_3:-9047112 | Msa0628410:CDS |
| GACTTGGCAGTGGATTCAGT+AGG | 0.688140 | 4_3:+9047895 | None:intergenic |
| TGAAACCGGTGAAGAAAACG+AGG | 0.705134 | 4_3:-9047176 | Msa0628410:CDS |
| ACTGCTATCACAGCACACAA+GGG | 0.723065 | 4_3:-9046857 | Msa0628410:CDS |
| AGACACTCCTATTGACGACG+AGG | 0.724010 | 4_3:-9048058 | Msa0628410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAGTATTTTTTTCTTCTGT+AGG | + | chr4_3:9047327-9047346 | None:intergenic | 25.0% |
| ! | TTTCAATCCAAAAATAGAAC+CGG | + | chr4_3:9047619-9047638 | None:intergenic | 25.0% |
| !!! | TCAGTATTTTTTTCTTCTGT+AGG | + | chr4_3:9047327-9047346 | None:intergenic | 25.0% |
| ! | TTTCAATCCAAAAATAGAAC+CGG | + | chr4_3:9047619-9047638 | None:intergenic | 25.0% |
| TTGGAGTAGATTTATTCTGT+TGG | + | chr4_3:9046978-9046997 | None:intergenic | 30.0% | |
| !!! | GTATTTTTTTCTTCTGTAGG+AGG | + | chr4_3:9047324-9047343 | None:intergenic | 30.0% |
| AAATAGTGAAAGCAAGGATA+AGG | - | chr4_3:9047365-9047384 | Msa0628410:CDS | 30.0% | |
| GCTGTTGAAATGATTTGAAA+GGG | + | chr4_3:9047488-9047507 | None:intergenic | 30.0% | |
| AGCTGTTGAAATGATTTGAA+AGG | + | chr4_3:9047489-9047508 | None:intergenic | 30.0% | |
| !!! | TCTTCTTCCTTATTTTCCTT+CGG | - | chr4_3:9047555-9047574 | Msa0628410:CDS | 30.0% |
| TTAGATAAACCAAGACCTAA+AGG | + | chr4_3:9047651-9047670 | None:intergenic | 30.0% | |
| TATTTGTGAGCTTCATTTCA+GGG | + | chr4_3:9047941-9047960 | None:intergenic | 30.0% | |
| ATATTTGTGAGCTTCATTTC+AGG | + | chr4_3:9047942-9047961 | None:intergenic | 30.0% | |
| TGAAATGAAGCTCACAAATA+TGG | - | chr4_3:9047941-9047960 | Msa0628410:CDS | 30.0% | |
| TCAATGCAAATGTTGAAAGA+CGG | + | chr4_3:9048010-9048029 | None:intergenic | 30.0% | |
| TTTGCATTGAAGTTCAAAGA+TGG | - | chr4_3:9048020-9048039 | Msa0628410:CDS | 30.0% | |
| TTGCATTGAAGTTCAAAGAT+GGG | - | chr4_3:9048021-9048040 | Msa0628410:CDS | 30.0% | |
| TTGGAGTAGATTTATTCTGT+TGG | + | chr4_3:9046978-9046997 | None:intergenic | 30.0% | |
| !!! | GTATTTTTTTCTTCTGTAGG+AGG | + | chr4_3:9047324-9047343 | None:intergenic | 30.0% |
| AAATAGTGAAAGCAAGGATA+AGG | - | chr4_3:9047365-9047384 | Msa0628410:CDS | 30.0% | |
| GCTGTTGAAATGATTTGAAA+GGG | + | chr4_3:9047488-9047507 | None:intergenic | 30.0% | |
| AGCTGTTGAAATGATTTGAA+AGG | + | chr4_3:9047489-9047508 | None:intergenic | 30.0% | |
| !!! | TCTTCTTCCTTATTTTCCTT+CGG | - | chr4_3:9047555-9047574 | Msa0628410:CDS | 30.0% |
| TTAGATAAACCAAGACCTAA+AGG | + | chr4_3:9047651-9047670 | None:intergenic | 30.0% | |
| TATTTGTGAGCTTCATTTCA+GGG | + | chr4_3:9047941-9047960 | None:intergenic | 30.0% | |
| ATATTTGTGAGCTTCATTTC+AGG | + | chr4_3:9047942-9047961 | None:intergenic | 30.0% | |
| TGAAATGAAGCTCACAAATA+TGG | - | chr4_3:9047941-9047960 | Msa0628410:CDS | 30.0% | |
| TCAATGCAAATGTTGAAAGA+CGG | + | chr4_3:9048010-9048029 | None:intergenic | 30.0% | |
| TTTGCATTGAAGTTCAAAGA+TGG | - | chr4_3:9048020-9048039 | Msa0628410:CDS | 30.0% | |
| TTGCATTGAAGTTCAAAGAT+GGG | - | chr4_3:9048021-9048040 | Msa0628410:CDS | 30.0% | |
| CTTACAGTCGTCAAAGAAAA+GGG | - | chr4_3:9046819-9046838 | Msa0628410:CDS | 35.0% | |
| !! | TGTTACTTTGACCATTCTTC+TGG | + | chr4_3:9046950-9046969 | None:intergenic | 35.0% |
| TACTTCAAACAACGATGTTG+CGG | - | chr4_3:9047143-9047162 | Msa0628410:CDS | 35.0% | |
| GGTAGATAATGAACAGAGTA+AGG | - | chr4_3:9047224-9047243 | Msa0628410:CDS | 35.0% | |
| GATAATGAACAGAGTAAGGA+TGG | - | chr4_3:9047228-9047247 | Msa0628410:CDS | 35.0% | |
| GATCGAAAATGAGGATAAGA+AGG | - | chr4_3:9047257-9047276 | Msa0628410:CDS | 35.0% | |
| TAAGAAGGAAGTTGCTGATA+AGG | - | chr4_3:9047272-9047291 | Msa0628410:CDS | 35.0% | |
| ACTGAGAACAGTGATAAGAA+CGG | - | chr4_3:9047342-9047361 | Msa0628410:CDS | 35.0% | |
| AGACAAAGTAAGTGAAAGCA+AGG | - | chr4_3:9047389-9047408 | Msa0628410:CDS | 35.0% | |
| AGTAAGTGAAAGCAAGGATA+AGG | - | chr4_3:9047395-9047414 | Msa0628410:CDS | 35.0% | |
| AGTAAGCGAAAGCAAAGATA+AGG | - | chr4_3:9047425-9047444 | Msa0628410:CDS | 35.0% | |
| !!! | CTTCTTCCTTATTTTCCTTC+GGG | - | chr4_3:9047556-9047575 | Msa0628410:CDS | 35.0% |
| !! | AACAAATGATGGGTCTACTT+TGG | - | chr4_3:9047584-9047603 | Msa0628410:CDS | 35.0% |
| !! | ACAAATGATGGGTCTACTTT+GGG | - | chr4_3:9047585-9047604 | Msa0628410:CDS | 35.0% |
| GTGAAAGTGAATGTAACTAG+TGG | - | chr4_3:9047843-9047862 | Msa0628410:CDS | 35.0% | |
| AACTAGTGGAACAGAAAAGA+AGG | - | chr4_3:9047857-9047876 | Msa0628410:CDS | 35.0% | |
| AATTTCCCTTAGACCTCATA+AGG | + | chr4_3:9047890-9047909 | None:intergenic | 35.0% | |
| CTCACAAATATGGAGAAGAA+GGG | - | chr4_3:9047951-9047970 | Msa0628410:CDS | 35.0% | |
| CTTACAGTCGTCAAAGAAAA+GGG | - | chr4_3:9046819-9046838 | Msa0628410:CDS | 35.0% | |
| !! | TGTTACTTTGACCATTCTTC+TGG | + | chr4_3:9046950-9046969 | None:intergenic | 35.0% |
| TACTTCAAACAACGATGTTG+CGG | - | chr4_3:9047143-9047162 | Msa0628410:CDS | 35.0% | |
| GGTAGATAATGAACAGAGTA+AGG | - | chr4_3:9047224-9047243 | Msa0628410:CDS | 35.0% | |
| GATAATGAACAGAGTAAGGA+TGG | - | chr4_3:9047228-9047247 | Msa0628410:CDS | 35.0% | |
| GATCGAAAATGAGGATAAGA+AGG | - | chr4_3:9047257-9047276 | Msa0628410:CDS | 35.0% | |
| TAAGAAGGAAGTTGCTGATA+AGG | - | chr4_3:9047272-9047291 | Msa0628410:CDS | 35.0% | |
| ACTGAGAACAGTGATAAGAA+CGG | - | chr4_3:9047342-9047361 | Msa0628410:CDS | 35.0% | |
| AGACAAAGTAAGTGAAAGCA+AGG | - | chr4_3:9047389-9047408 | Msa0628410:CDS | 35.0% | |
| AGTAAGTGAAAGCAAGGATA+AGG | - | chr4_3:9047395-9047414 | Msa0628410:CDS | 35.0% | |
| AGTAAGCGAAAGCAAAGATA+AGG | - | chr4_3:9047425-9047444 | Msa0628410:CDS | 35.0% | |
| !!! | CTTCTTCCTTATTTTCCTTC+GGG | - | chr4_3:9047556-9047575 | Msa0628410:CDS | 35.0% |
| !! | AACAAATGATGGGTCTACTT+TGG | - | chr4_3:9047584-9047603 | Msa0628410:CDS | 35.0% |
| !! | ACAAATGATGGGTCTACTTT+GGG | - | chr4_3:9047585-9047604 | Msa0628410:CDS | 35.0% |
| GTGAAAGTGAATGTAACTAG+TGG | - | chr4_3:9047843-9047862 | Msa0628410:CDS | 35.0% | |
| AACTAGTGGAACAGAAAAGA+AGG | - | chr4_3:9047857-9047876 | Msa0628410:CDS | 35.0% | |
| AATTTCCCTTAGACCTCATA+AGG | + | chr4_3:9047890-9047909 | None:intergenic | 35.0% | |
| CTCACAAATATGGAGAAGAA+GGG | - | chr4_3:9047951-9047970 | Msa0628410:CDS | 35.0% | |
| ! | CCTTTTCTTTGACGACTGTA+AGG | + | chr4_3:9046821-9046840 | None:intergenic | 40.0% |
| CCTTACAGTCGTCAAAGAAA+AGG | - | chr4_3:9046818-9046837 | Msa0628410:CDS | 40.0% | |
| ! | TCTTCATCCTTAGCTTTCTC+TGG | + | chr4_3:9047078-9047097 | None:intergenic | 40.0% |
| TGGACGTAAGATCGAAAATG+AGG | - | chr4_3:9047248-9047267 | Msa0628410:CDS | 40.0% | |
| !!! | AGGTTCTTTTTCGATCTCAC+TGG | + | chr4_3:9047304-9047323 | None:intergenic | 40.0% |
| GAACGGAAATAGTGAAAGCA+AGG | - | chr4_3:9047359-9047378 | Msa0628410:CDS | 40.0% | |
| AGCAATCAAAATGCCTTCAC+AGG | - | chr4_3:9047513-9047532 | Msa0628410:CDS | 40.0% | |
| TGTAGACCCGAAGGAAAATA+AGG | + | chr4_3:9047565-9047584 | None:intergenic | 40.0% | |
| !! | ATCATTTGTTGTAGACCCGA+AGG | + | chr4_3:9047574-9047593 | None:intergenic | 40.0% |
| TTCGGGTCTACAACAAATGA+TGG | - | chr4_3:9047573-9047592 | Msa0628410:CDS | 40.0% | |
| TCGGGTCTACAACAAATGAT+GGG | - | chr4_3:9047574-9047593 | Msa0628410:CDS | 40.0% | |
| ATAAACCAAGACCTAAAGGC+TGG | + | chr4_3:9047647-9047666 | None:intergenic | 40.0% | |
| TTATCTAACGCTGGAAGTTC+TGG | - | chr4_3:9047663-9047682 | Msa0628410:CDS | 40.0% | |
| !!! | AGTTCTGGTTTTGGAACATC+AGG | - | chr4_3:9047678-9047697 | Msa0628410:CDS | 40.0% |
| !! | GTGTTGTTTGAGTTTGCAGA+TGG | - | chr4_3:9047792-9047811 | Msa0628410:CDS | 40.0% |
| ! | TTGTTTGAGTTTGCAGATGG+AGG | - | chr4_3:9047795-9047814 | Msa0628410:CDS | 40.0% |
| GCTCACAAATATGGAGAAGA+AGG | - | chr4_3:9047950-9047969 | Msa0628410:CDS | 40.0% | |
| AGTCTTGAAATCCTCCACTA+TGG | + | chr4_3:9048048-9048067 | None:intergenic | 40.0% | |
| ! | CCTTTTCTTTGACGACTGTA+AGG | + | chr4_3:9046821-9046840 | None:intergenic | 40.0% |
| CCTTACAGTCGTCAAAGAAA+AGG | - | chr4_3:9046818-9046837 | Msa0628410:CDS | 40.0% | |
| ! | TCTTCATCCTTAGCTTTCTC+TGG | + | chr4_3:9047078-9047097 | None:intergenic | 40.0% |
| TGGACGTAAGATCGAAAATG+AGG | - | chr4_3:9047248-9047267 | Msa0628410:CDS | 40.0% | |
| !!! | AGGTTCTTTTTCGATCTCAC+TGG | + | chr4_3:9047304-9047323 | None:intergenic | 40.0% |
| GAACGGAAATAGTGAAAGCA+AGG | - | chr4_3:9047359-9047378 | Msa0628410:CDS | 40.0% | |
| AGCAATCAAAATGCCTTCAC+AGG | - | chr4_3:9047513-9047532 | Msa0628410:CDS | 40.0% | |
| TGTAGACCCGAAGGAAAATA+AGG | + | chr4_3:9047565-9047584 | None:intergenic | 40.0% | |
| !! | ATCATTTGTTGTAGACCCGA+AGG | + | chr4_3:9047574-9047593 | None:intergenic | 40.0% |
| TTCGGGTCTACAACAAATGA+TGG | - | chr4_3:9047573-9047592 | Msa0628410:CDS | 40.0% | |
| TCGGGTCTACAACAAATGAT+GGG | - | chr4_3:9047574-9047593 | Msa0628410:CDS | 40.0% | |
| ATAAACCAAGACCTAAAGGC+TGG | + | chr4_3:9047647-9047666 | None:intergenic | 40.0% | |
| TTATCTAACGCTGGAAGTTC+TGG | - | chr4_3:9047663-9047682 | Msa0628410:CDS | 40.0% | |
| !!! | AGTTCTGGTTTTGGAACATC+AGG | - | chr4_3:9047678-9047697 | Msa0628410:CDS | 40.0% |
| !! | GTGTTGTTTGAGTTTGCAGA+TGG | - | chr4_3:9047792-9047811 | Msa0628410:CDS | 40.0% |
| ! | TTGTTTGAGTTTGCAGATGG+AGG | - | chr4_3:9047795-9047814 | Msa0628410:CDS | 40.0% |
| GCTCACAAATATGGAGAAGA+AGG | - | chr4_3:9047950-9047969 | Msa0628410:CDS | 40.0% | |
| AGTCTTGAAATCCTCCACTA+TGG | + | chr4_3:9048048-9048067 | None:intergenic | 40.0% | |
| TCATCTTCCTCGTCGTCAAT+AGG | + | chr4_3:9046874-9046893 | None:intergenic | 45.0% | |
| !! | ACTGGCTTTCTTGAAAGTCC+CGG | + | chr4_3:9046911-9046930 | None:intergenic | 45.0% |
| GACTTTCAAGAAAGCCAGTG+AGG | - | chr4_3:9046912-9046931 | Msa0628410:CDS | 45.0% | |
| TTTCAAGAAAGCCAGTGAGG+AGG | - | chr4_3:9046915-9046934 | Msa0628410:CDS | 45.0% | |
| GGTTCTTGCAACCAGAAGAA+TGG | - | chr4_3:9046936-9046955 | Msa0628410:CDS | 45.0% | |
| AGTAGTAGCTTCACCAGACT+TGG | + | chr4_3:9047046-9047065 | None:intergenic | 45.0% | |
| GTAGATTTGTCCTCAACCTC+AGG | + | chr4_3:9047126-9047145 | None:intergenic | 45.0% | |
| ATGGGTCTACTTTGGGTAGT+GGG | - | chr4_3:9047592-9047611 | Msa0628410:CDS | 45.0% | |
| ! | AGTGGGTCCGGTTCTATTTT+TGG | - | chr4_3:9047609-9047628 | Msa0628410:CDS | 45.0% |
| TTGAAACCTGACCAGCCTTT+AGG | - | chr4_3:9047633-9047652 | Msa0628410:CDS | 45.0% | |
| GGTCTTGGTTTATCTAACGC+TGG | - | chr4_3:9047654-9047673 | Msa0628410:CDS | 45.0% | |
| !!! | AACGCTGGAAGTTCTGGTTT+TGG | - | chr4_3:9047669-9047688 | Msa0628410:CDS | 45.0% |
| TTCCAAGACTGAAACACTGC+AGG | - | chr4_3:9047713-9047732 | Msa0628410:CDS | 45.0% | |
| TTCCTGCAGTGTTTCAGTCT+TGG | + | chr4_3:9047718-9047737 | None:intergenic | 45.0% | |
| CAGGAAGTCGTTGTTGAAAC+CGG | - | chr4_3:9047732-9047751 | Msa0628410:CDS | 45.0% | |
| TGAAACCGGTGAAGAAAACG+AGG | - | chr4_3:9047746-9047765 | Msa0628410:CDS | 45.0% | |
| ! | CACTTCCTCGTTTTCTTCAC+CGG | + | chr4_3:9047754-9047773 | None:intergenic | 45.0% |
| TTGAGTTTGCAGATGGAGGT+TGG | - | chr4_3:9047799-9047818 | Msa0628410:CDS | 45.0% | |
| CTTAGACCTCATAAGGACTC+GGG | + | chr4_3:9047883-9047902 | None:intergenic | 45.0% | |
| CCTTAGACCTCATAAGGACT+CGG | + | chr4_3:9047884-9047903 | None:intergenic | 45.0% | |
| CGAGTCCTTATGAGGTCTAA+GGG | - | chr4_3:9047882-9047901 | Msa0628410:CDS | 45.0% | |
| GTTCAAAGATGGGTCCATAG+TGG | - | chr4_3:9048031-9048050 | Msa0628410:CDS | 45.0% | |
| ACTGCTATCACAGCACACAA+GGG | - | chr4_3:9048065-9048084 | Msa0628410:CDS | 45.0% | |
| TCATCTTCCTCGTCGTCAAT+AGG | + | chr4_3:9046874-9046893 | None:intergenic | 45.0% | |
| !! | ACTGGCTTTCTTGAAAGTCC+CGG | + | chr4_3:9046911-9046930 | None:intergenic | 45.0% |
| GACTTTCAAGAAAGCCAGTG+AGG | - | chr4_3:9046912-9046931 | Msa0628410:CDS | 45.0% | |
| TTTCAAGAAAGCCAGTGAGG+AGG | - | chr4_3:9046915-9046934 | Msa0628410:CDS | 45.0% | |
| GGTTCTTGCAACCAGAAGAA+TGG | - | chr4_3:9046936-9046955 | Msa0628410:CDS | 45.0% | |
| AGTAGTAGCTTCACCAGACT+TGG | + | chr4_3:9047046-9047065 | None:intergenic | 45.0% | |
| GTAGATTTGTCCTCAACCTC+AGG | + | chr4_3:9047126-9047145 | None:intergenic | 45.0% | |
| ATGGGTCTACTTTGGGTAGT+GGG | - | chr4_3:9047592-9047611 | Msa0628410:CDS | 45.0% | |
| ! | AGTGGGTCCGGTTCTATTTT+TGG | - | chr4_3:9047609-9047628 | Msa0628410:CDS | 45.0% |
| TTGAAACCTGACCAGCCTTT+AGG | - | chr4_3:9047633-9047652 | Msa0628410:CDS | 45.0% | |
| GGTCTTGGTTTATCTAACGC+TGG | - | chr4_3:9047654-9047673 | Msa0628410:CDS | 45.0% | |
| !!! | AACGCTGGAAGTTCTGGTTT+TGG | - | chr4_3:9047669-9047688 | Msa0628410:CDS | 45.0% |
| TTCCAAGACTGAAACACTGC+AGG | - | chr4_3:9047713-9047732 | Msa0628410:CDS | 45.0% | |
| TTCCTGCAGTGTTTCAGTCT+TGG | + | chr4_3:9047718-9047737 | None:intergenic | 45.0% | |
| CAGGAAGTCGTTGTTGAAAC+CGG | - | chr4_3:9047732-9047751 | Msa0628410:CDS | 45.0% | |
| TGAAACCGGTGAAGAAAACG+AGG | - | chr4_3:9047746-9047765 | Msa0628410:CDS | 45.0% | |
| ! | CACTTCCTCGTTTTCTTCAC+CGG | + | chr4_3:9047754-9047773 | None:intergenic | 45.0% |
| TTGAGTTTGCAGATGGAGGT+TGG | - | chr4_3:9047799-9047818 | Msa0628410:CDS | 45.0% | |
| CTTAGACCTCATAAGGACTC+GGG | + | chr4_3:9047883-9047902 | None:intergenic | 45.0% | |
| CCTTAGACCTCATAAGGACT+CGG | + | chr4_3:9047884-9047903 | None:intergenic | 45.0% | |
| CGAGTCCTTATGAGGTCTAA+GGG | - | chr4_3:9047882-9047901 | Msa0628410:CDS | 45.0% | |
| GTTCAAAGATGGGTCCATAG+TGG | - | chr4_3:9048031-9048050 | Msa0628410:CDS | 45.0% | |
| ACTGCTATCACAGCACACAA+GGG | - | chr4_3:9048065-9048084 | Msa0628410:CDS | 45.0% | |
| TCGTCAAAGAAAAGGGCTGC+TGG | - | chr4_3:9046826-9046845 | Msa0628410:CDS | 50.0% | |
| CGTCAAAGAAAAGGGCTGCT+GGG | - | chr4_3:9046827-9046846 | Msa0628410:CDS | 50.0% | |
| !! | GTCGTCAATAGGAGTGTCTC+GGG | + | chr4_3:9046863-9046882 | None:intergenic | 50.0% |
| !! | CGTCGTCAATAGGAGTGTCT+CGG | + | chr4_3:9046864-9046883 | None:intergenic | 50.0% |
| AGACACTCCTATTGACGACG+AGG | - | chr4_3:9046864-9046883 | Msa0628410:CDS | 50.0% | |
| CTTGAAAGTCCCGGCTTCAA+GGG | + | chr4_3:9046902-9046921 | None:intergenic | 50.0% | |
| TCTTGAAAGTCCCGGCTTCA+AGG | + | chr4_3:9046903-9046922 | None:intergenic | 50.0% | |
| TCTACTCCAAACCCTTTCGC+TGG | - | chr4_3:9046988-9047007 | Msa0628410:CDS | 50.0% | |
| CGTATACCAGCGAAAGGGTT+TGG | + | chr4_3:9046997-9047016 | None:intergenic | 50.0% | |
| GCAAGCGTATACCAGCGAAA+GGG | + | chr4_3:9047002-9047021 | None:intergenic | 50.0% | |
| ! | GACTTGGCAGTGGATTCAGT+AGG | + | chr4_3:9047030-9047049 | None:intergenic | 50.0% |
| ACTGAATCCACTGCCAAGTC+TGG | - | chr4_3:9047030-9047049 | Msa0628410:CDS | 50.0% | |
| AACGCAGCCAGAGAAAGCTA+AGG | - | chr4_3:9047068-9047087 | Msa0628410:CDS | 50.0% | |
| GTTGCGGACAGAAACAATGC+AGG | - | chr4_3:9047159-9047178 | Msa0628410:CDS | 50.0% | |
| GGACAGAAACAATGCAGGCA+AGG | - | chr4_3:9047164-9047183 | Msa0628410:CDS | 50.0% | |
| GAGCGACAGTGACAACTCTA+AGG | - | chr4_3:9047203-9047222 | Msa0628410:CDS | 50.0% | |
| AATGCCTTCACAGGTCTTGC+TGG | - | chr4_3:9047522-9047541 | Msa0628410:CDS | 50.0% | |
| ATGCCTTCACAGGTCTTGCT+GGG | - | chr4_3:9047523-9047542 | Msa0628410:CDS | 50.0% | |
| GATGGGTCTACTTTGGGTAG+TGG | - | chr4_3:9047591-9047610 | Msa0628410:CDS | 50.0% | |
| !! | TCTACTTTGGGTAGTGGGTC+CGG | - | chr4_3:9047597-9047616 | Msa0628410:CDS | 50.0% |
| CGGTGAAGAAAACGAGGAAG+TGG | - | chr4_3:9047752-9047771 | Msa0628410:CDS | 50.0% | |
| GTTTGCAGATGGAGGTTGGA+AGG | - | chr4_3:9047803-9047822 | Msa0628410:CDS | 50.0% | |
| AGGTTGGAAGGAACGTGGAA+AGG | - | chr4_3:9047815-9047834 | Msa0628410:CDS | 50.0% | |
| GGTTGGAAGGAACGTGGAAA+GGG | - | chr4_3:9047816-9047835 | Msa0628410:CDS | 50.0% | |
| CCGAGTCCTTATGAGGTCTA+AGG | - | chr4_3:9047881-9047900 | Msa0628410:CDS | 50.0% | |
| ! | ACCTTTGCATGTGCCACTGA+AGG | - | chr4_3:9047978-9047997 | Msa0628410:CDS | 50.0% |
| ! | CCTTTGCATGTGCCACTGAA+GGG | - | chr4_3:9047979-9047998 | Msa0628410:CDS | 50.0% |
| AAGACGGTCTTTCCCTTCAG+TGG | + | chr4_3:9047994-9048013 | None:intergenic | 50.0% | |
| CAAAGATGGGTCCATAGTGG+AGG | - | chr4_3:9048034-9048053 | Msa0628410:CDS | 50.0% | |
| GACTGCTATCACAGCACACA+AGG | - | chr4_3:9048064-9048083 | Msa0628410:CDS | 50.0% | |
| CTATCACAGCACACAAGGGT+GGG | - | chr4_3:9048069-9048088 | Msa0628410:CDS | 50.0% | |
| TATCACAGCACACAAGGGTG+GGG | - | chr4_3:9048070-9048089 | Msa0628410:CDS | 50.0% | |
| TCGTCAAAGAAAAGGGCTGC+TGG | - | chr4_3:9046826-9046845 | Msa0628410:CDS | 50.0% | |
| CGTCAAAGAAAAGGGCTGCT+GGG | - | chr4_3:9046827-9046846 | Msa0628410:CDS | 50.0% | |
| !! | GTCGTCAATAGGAGTGTCTC+GGG | + | chr4_3:9046863-9046882 | None:intergenic | 50.0% |
| !! | CGTCGTCAATAGGAGTGTCT+CGG | + | chr4_3:9046864-9046883 | None:intergenic | 50.0% |
| AGACACTCCTATTGACGACG+AGG | - | chr4_3:9046864-9046883 | Msa0628410:CDS | 50.0% | |
| CTTGAAAGTCCCGGCTTCAA+GGG | + | chr4_3:9046902-9046921 | None:intergenic | 50.0% | |
| TCTTGAAAGTCCCGGCTTCA+AGG | + | chr4_3:9046903-9046922 | None:intergenic | 50.0% | |
| TCTACTCCAAACCCTTTCGC+TGG | - | chr4_3:9046988-9047007 | Msa0628410:CDS | 50.0% | |
| CGTATACCAGCGAAAGGGTT+TGG | + | chr4_3:9046997-9047016 | None:intergenic | 50.0% | |
| GCAAGCGTATACCAGCGAAA+GGG | + | chr4_3:9047002-9047021 | None:intergenic | 50.0% | |
| ! | GACTTGGCAGTGGATTCAGT+AGG | + | chr4_3:9047030-9047049 | None:intergenic | 50.0% |
| ACTGAATCCACTGCCAAGTC+TGG | - | chr4_3:9047030-9047049 | Msa0628410:CDS | 50.0% | |
| AACGCAGCCAGAGAAAGCTA+AGG | - | chr4_3:9047068-9047087 | Msa0628410:CDS | 50.0% | |
| GTTGCGGACAGAAACAATGC+AGG | - | chr4_3:9047159-9047178 | Msa0628410:CDS | 50.0% | |
| GGACAGAAACAATGCAGGCA+AGG | - | chr4_3:9047164-9047183 | Msa0628410:CDS | 50.0% | |
| GAGCGACAGTGACAACTCTA+AGG | - | chr4_3:9047203-9047222 | Msa0628410:CDS | 50.0% | |
| AATGCCTTCACAGGTCTTGC+TGG | - | chr4_3:9047522-9047541 | Msa0628410:CDS | 50.0% | |
| ATGCCTTCACAGGTCTTGCT+GGG | - | chr4_3:9047523-9047542 | Msa0628410:CDS | 50.0% | |
| GATGGGTCTACTTTGGGTAG+TGG | - | chr4_3:9047591-9047610 | Msa0628410:CDS | 50.0% | |
| !! | TCTACTTTGGGTAGTGGGTC+CGG | - | chr4_3:9047597-9047616 | Msa0628410:CDS | 50.0% |
| CGGTGAAGAAAACGAGGAAG+TGG | - | chr4_3:9047752-9047771 | Msa0628410:CDS | 50.0% | |
| GTTTGCAGATGGAGGTTGGA+AGG | - | chr4_3:9047803-9047822 | Msa0628410:CDS | 50.0% | |
| AGGTTGGAAGGAACGTGGAA+AGG | - | chr4_3:9047815-9047834 | Msa0628410:CDS | 50.0% | |
| GGTTGGAAGGAACGTGGAAA+GGG | - | chr4_3:9047816-9047835 | Msa0628410:CDS | 50.0% | |
| CCGAGTCCTTATGAGGTCTA+AGG | - | chr4_3:9047881-9047900 | Msa0628410:CDS | 50.0% | |
| ! | ACCTTTGCATGTGCCACTGA+AGG | - | chr4_3:9047978-9047997 | Msa0628410:CDS | 50.0% |
| ! | CCTTTGCATGTGCCACTGAA+GGG | - | chr4_3:9047979-9047998 | Msa0628410:CDS | 50.0% |
| AAGACGGTCTTTCCCTTCAG+TGG | + | chr4_3:9047994-9048013 | None:intergenic | 50.0% | |
| CAAAGATGGGTCCATAGTGG+AGG | - | chr4_3:9048034-9048053 | Msa0628410:CDS | 50.0% | |
| GACTGCTATCACAGCACACA+AGG | - | chr4_3:9048064-9048083 | Msa0628410:CDS | 50.0% | |
| CTATCACAGCACACAAGGGT+GGG | - | chr4_3:9048069-9048088 | Msa0628410:CDS | 50.0% | |
| TATCACAGCACACAAGGGTG+GGG | - | chr4_3:9048070-9048089 | Msa0628410:CDS | 50.0% | |
| GGTTGCAAGAACCTCCTCAC+TGG | + | chr4_3:9046929-9046948 | None:intergenic | 55.0% | |
| GGCAAGCGTATACCAGCGAA+AGG | + | chr4_3:9047003-9047022 | None:intergenic | 55.0% | |
| ! | GCAGTGGATTCAGTAGGAGC+AGG | + | chr4_3:9047024-9047043 | None:intergenic | 55.0% |
| AGCTTCACCAGACTTGGCAG+TGG | + | chr4_3:9047040-9047059 | None:intergenic | 55.0% | |
| ACCTCAGGAGCTTTGCTCTC+TGG | + | chr4_3:9047111-9047130 | None:intergenic | 55.0% | |
| GAGCAAAGCTCCTGAGGTTG+AGG | - | chr4_3:9047113-9047132 | Msa0628410:CDS | 55.0% | |
| CAATGCAGGCAAGGAGCTTG+CGG | - | chr4_3:9047173-9047192 | Msa0628410:CDS | 55.0% | |
| AGTGACGAGCCTACTGCTGA+AGG | - | chr4_3:9047459-9047478 | Msa0628410:CDS | 55.0% | |
| AAAGGGCCACCTTCAGCAGT+AGG | + | chr4_3:9047471-9047490 | None:intergenic | 55.0% | |
| AGACCCAGCAAGACCTGTGA+AGG | + | chr4_3:9047529-9047548 | None:intergenic | 55.0% | |
| TTCACAGGTCTTGCTGGGTC+TGG | - | chr4_3:9047528-9047547 | Msa0628410:CDS | 55.0% | |
| ! | CCAAGACCTAAAGGCTGGTC+AGG | + | chr4_3:9047642-9047661 | None:intergenic | 55.0% |
| CCTGACCAGCCTTTAGGTCT+TGG | - | chr4_3:9047639-9047658 | Msa0628410:CDS | 55.0% | |
| GATGGAGGTTGGAAGGAACG+TGG | - | chr4_3:9047810-9047829 | Msa0628410:CDS | 55.0% | |
| AGAAGGCCCGAGTCCTTATG+AGG | - | chr4_3:9047874-9047893 | Msa0628410:CDS | 55.0% | |
| CCCTTCAGTGGCACATGCAA+AGG | + | chr4_3:9047982-9048001 | None:intergenic | 55.0% | |
| GCTATCACAGCACACAAGGG+TGG | - | chr4_3:9048068-9048087 | Msa0628410:CDS | 55.0% | |
| GACTCCAGAGAACTCTCCCA+AGG | - | chr4_3:9048109-9048128 | Msa0628410:CDS | 55.0% | |
| GAAGCCTTGGGAGAGTTCTC+TGG | + | chr4_3:9048116-9048135 | None:intergenic | 55.0% | |
| GGTTGCAAGAACCTCCTCAC+TGG | + | chr4_3:9046929-9046948 | None:intergenic | 55.0% | |
| GGCAAGCGTATACCAGCGAA+AGG | + | chr4_3:9047003-9047022 | None:intergenic | 55.0% | |
| ! | GCAGTGGATTCAGTAGGAGC+AGG | + | chr4_3:9047024-9047043 | None:intergenic | 55.0% |
| AGCTTCACCAGACTTGGCAG+TGG | + | chr4_3:9047040-9047059 | None:intergenic | 55.0% | |
| ACCTCAGGAGCTTTGCTCTC+TGG | + | chr4_3:9047111-9047130 | None:intergenic | 55.0% | |
| GAGCAAAGCTCCTGAGGTTG+AGG | - | chr4_3:9047113-9047132 | Msa0628410:CDS | 55.0% | |
| CAATGCAGGCAAGGAGCTTG+CGG | - | chr4_3:9047173-9047192 | Msa0628410:CDS | 55.0% | |
| AGTGACGAGCCTACTGCTGA+AGG | - | chr4_3:9047459-9047478 | Msa0628410:CDS | 55.0% | |
| AAAGGGCCACCTTCAGCAGT+AGG | + | chr4_3:9047471-9047490 | None:intergenic | 55.0% | |
| AGACCCAGCAAGACCTGTGA+AGG | + | chr4_3:9047529-9047548 | None:intergenic | 55.0% | |
| TTCACAGGTCTTGCTGGGTC+TGG | - | chr4_3:9047528-9047547 | Msa0628410:CDS | 55.0% | |
| ! | CCAAGACCTAAAGGCTGGTC+AGG | + | chr4_3:9047642-9047661 | None:intergenic | 55.0% |
| CCTGACCAGCCTTTAGGTCT+TGG | - | chr4_3:9047639-9047658 | Msa0628410:CDS | 55.0% | |
| GATGGAGGTTGGAAGGAACG+TGG | - | chr4_3:9047810-9047829 | Msa0628410:CDS | 55.0% | |
| AGAAGGCCCGAGTCCTTATG+AGG | - | chr4_3:9047874-9047893 | Msa0628410:CDS | 55.0% | |
| CCCTTCAGTGGCACATGCAA+AGG | + | chr4_3:9047982-9048001 | None:intergenic | 55.0% | |
| GCTATCACAGCACACAAGGG+TGG | - | chr4_3:9048068-9048087 | Msa0628410:CDS | 55.0% | |
| GACTCCAGAGAACTCTCCCA+AGG | - | chr4_3:9048109-9048128 | Msa0628410:CDS | 55.0% | |
| GAAGCCTTGGGAGAGTTCTC+TGG | + | chr4_3:9048116-9048135 | None:intergenic | 55.0% | |
| GATGACGCTGCCCTTGAAGC+CGG | - | chr4_3:9046889-9046908 | Msa0628410:CDS | 60.0% | |
| ATGACGCTGCCCTTGAAGCC+GGG | - | chr4_3:9046890-9046909 | Msa0628410:CDS | 60.0% | |
| GCCAGAGAGCAAAGCTCCTG+AGG | - | chr4_3:9047107-9047126 | Msa0628410:CDS | 60.0% | |
| AGGCAAGGAGCTTGCGGAGA+AGG | - | chr4_3:9047179-9047198 | Msa0628410:CDS | 60.0% | |
| GACGAGCCTACTGCTGAAGG+TGG | - | chr4_3:9047462-9047481 | Msa0628410:CDS | 60.0% | |
| GATGACGCTGCCCTTGAAGC+CGG | - | chr4_3:9046889-9046908 | Msa0628410:CDS | 60.0% | |
| ATGACGCTGCCCTTGAAGCC+GGG | - | chr4_3:9046890-9046909 | Msa0628410:CDS | 60.0% | |
| GCCAGAGAGCAAAGCTCCTG+AGG | - | chr4_3:9047107-9047126 | Msa0628410:CDS | 60.0% | |
| AGGCAAGGAGCTTGCGGAGA+AGG | - | chr4_3:9047179-9047198 | Msa0628410:CDS | 60.0% | |
| GACGAGCCTACTGCTGAAGG+TGG | - | chr4_3:9047462-9047481 | Msa0628410:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 9046799 | 9048145 | 9046799 | ID=Msa0628410;Name=Msa0628410 |
| chr4_3 | mRNA | 9046799 | 9048145 | 9046799 | ID=Msa0628410-mRNA-1;Parent=Msa0628410;Name=Msa0628410-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|-1|0|1|-1|1|1|0|448 |
| chr4_3 | exon | 9046799 | 9048145 | 9046799 | ID=Msa0628410-mRNA-1:exon:2691;Parent=Msa0628410-mRNA-1 |
| chr4_3 | CDS | 9046799 | 9048145 | 9046799 | ID=Msa0628410-mRNA-1:cds;Parent=Msa0628410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
