Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1320850 | XP_003627756.1 | 92.575 | 431 | 29 | 1 | 1 | 428 | 1 | 431 | 0.0 | 832 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1320850 | sp|Q9SXD5|GSXL3_ARATH | 52.235 | 425 | 192 | 4 | 4 | 417 | 13 | 437 | 6.75e-155 | 448 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1320850 | G7LEJ7 | 92.575 | 431 | 29 | 1 | 1 | 428 | 1 | 431 | 0.0 | 832 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0641130 | Msa1320850 | 0.823389 | 1.422303e-53 | -8.615850e-47 |
| Msa0796980 | Msa1320850 | 0.806467 | 8.109789e-50 | -8.615850e-47 |
| Msa1248830 | Msa1320850 | 0.811455 | 6.941465e-51 | -8.615850e-47 |
| Msa1281660 | Msa1320850 | 0.830088 | 3.575293e-55 | -8.615850e-47 |
| Msa1320850 | Msa1325410 | -0.808568 | 2.905130e-50 | -8.615850e-47 |
| Msa1320850 | Msa1419840 | 0.813601 | 2.356413e-51 | -8.615850e-47 |
| Msa1320850 | Msa1442920 | 0.810808 | 9.589673e-51 | -8.615850e-47 |
| Msa1320850 | Msa1452710 | 0.802907 | 4.490546e-49 | -8.615850e-47 |
| Msa1320850 | Msa1458680 | 0.817852 | 2.659349e-52 | -8.615850e-47 |
| Msa0278580 | Msa1320850 | 0.806561 | 7.749861e-50 | -8.615850e-47 |
| Msa0287870 | Msa1320850 | 0.822219 | 2.662831e-53 | -8.615850e-47 |
| Msa1108760 | Msa1320850 | 0.814960 | 1.180539e-51 | -8.615850e-47 |
| Msa1184690 | Msa1320850 | 0.802323 | 5.925018e-49 | -8.615850e-47 |
| Msa1186160 | Msa1320850 | 0.887440 | 1.424771e-72 | -8.615850e-47 |
| Msa0517270 | Msa1320850 | 0.804071 | 2.575720e-49 | -8.615850e-47 |
| Msa0545050 | Msa1320850 | 0.807100 | 5.960206e-50 | -8.615850e-47 |
| Msa0549890 | Msa1320850 | 0.802383 | 5.758175e-49 | -8.615850e-47 |
| Msa0600590 | Msa1320850 | 0.817507 | 3.181046e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1320850 | MtrunA17_Chr8g0352481 | 92.575 | 431 | 29 | 1 | 1 | 428 | 1 | 431 | 0.0 | 832 |
| Msa1320850 | MtrunA17_Chr8g0352461 | 84.954 | 432 | 61 | 2 | 1 | 428 | 1 | 432 | 0.0 | 763 |
| Msa1320850 | MtrunA17_Chr5g0399001 | 51.972 | 431 | 193 | 6 | 4 | 423 | 33 | 460 | 2.02e-149 | 432 |
| Msa1320850 | MtrunA17_Chr3g0091441 | 41.435 | 432 | 227 | 10 | 4 | 416 | 13 | 437 | 2.08e-110 | 332 |
| Msa1320850 | MtrunA17_Chr3g0139441 | 28.095 | 210 | 121 | 6 | 6 | 211 | 41 | 224 | 3.28e-17 | 83.2 |
| Msa1320850 | MtrunA17_Chr2g0304651 | 26.877 | 253 | 127 | 8 | 3 | 221 | 4 | 232 | 4.13e-16 | 80.5 |
| Msa1320850 | MtrunA17_Chr7g0268621 | 23.488 | 281 | 174 | 7 | 4 | 278 | 6 | 251 | 1.61e-15 | 77.8 |
| Msa1320850 | MtrunA17_Chr2g0304721 | 26.877 | 253 | 127 | 8 | 3 | 221 | 4 | 232 | 1.63e-15 | 78.6 |
| Msa1320850 | MtrunA17_Chr2g0305211 | 25.820 | 244 | 123 | 8 | 4 | 213 | 5 | 224 | 4.81e-15 | 77.0 |
| Msa1320850 | MtrunA17_Chr2g0305231 | 25.820 | 244 | 123 | 8 | 4 | 213 | 5 | 224 | 4.81e-15 | 77.0 |
| Msa1320850 | MtrunA17_Chr1g0148801 | 24.038 | 208 | 128 | 6 | 6 | 211 | 18 | 197 | 2.28e-14 | 74.3 |
| Msa1320850 | MtrunA17_Chr7g0268611 | 24.255 | 235 | 144 | 5 | 3 | 230 | 7 | 214 | 4.22e-14 | 73.6 |
| Msa1320850 | MtrunA17_Chr2g0301661 | 26.923 | 208 | 100 | 7 | 3 | 183 | 13 | 195 | 2.02e-13 | 72.0 |
| Msa1320850 | MtrunA17_Chr5g0412881 | 24.402 | 209 | 132 | 4 | 4 | 210 | 6 | 190 | 3.95e-13 | 70.5 |
| Msa1320850 | MtrunA17_Chr1g0182991 | 22.857 | 210 | 131 | 4 | 6 | 211 | 27 | 209 | 7.04e-13 | 70.1 |
| Msa1320850 | MtrunA17_Chr1g0147221 | 25.359 | 209 | 127 | 6 | 6 | 211 | 44 | 226 | 2.61e-12 | 68.2 |
| Msa1320850 | MtrunA17_Chr8g0350371 | 22.222 | 225 | 148 | 5 | 4 | 226 | 6 | 205 | 5.92e-12 | 67.0 |
| Msa1320850 | MtrunA17_Chr6g0485621 | 24.883 | 213 | 127 | 5 | 6 | 211 | 34 | 220 | 5.77e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1320850 | AT1G62620.1 | 52.235 | 425 | 192 | 4 | 4 | 417 | 13 | 437 | 6.86e-156 | 448 |
| Msa1320850 | AT1G12140.1 | 52.594 | 424 | 193 | 3 | 2 | 417 | 11 | 434 | 8.88e-155 | 446 |
| Msa1320850 | AT1G12140.3 | 52.594 | 424 | 193 | 3 | 2 | 417 | 11 | 434 | 8.88e-155 | 446 |
| Msa1320850 | AT1G63370.1 | 51.765 | 425 | 194 | 4 | 4 | 417 | 13 | 437 | 3.01e-154 | 444 |
| Msa1320850 | AT1G12200.1 | 53.037 | 428 | 186 | 5 | 4 | 417 | 14 | 440 | 1.20e-151 | 438 |
| Msa1320850 | AT1G12140.2 | 52.123 | 424 | 193 | 4 | 2 | 417 | 11 | 432 | 3.74e-151 | 437 |
| Msa1320850 | AT1G62600.1 | 51.288 | 427 | 195 | 4 | 4 | 417 | 13 | 439 | 4.91e-147 | 426 |
| Msa1320850 | AT1G12160.1 | 48.747 | 439 | 196 | 7 | 4 | 416 | 12 | 447 | 3.19e-146 | 424 |
| Msa1320850 | AT1G12130.1 | 50.562 | 445 | 191 | 7 | 4 | 423 | 13 | 453 | 3.52e-144 | 419 |
| Msa1320850 | AT1G62620.2 | 54.400 | 375 | 163 | 3 | 4 | 370 | 13 | 387 | 4.85e-144 | 416 |
| Msa1320850 | AT1G62560.1 | 48.585 | 424 | 205 | 6 | 4 | 416 | 13 | 434 | 8.19e-144 | 418 |
| Msa1320850 | AT1G65860.1 | 49.169 | 421 | 206 | 4 | 4 | 416 | 13 | 433 | 1.21e-143 | 417 |
| Msa1320850 | AT1G62580.2 | 52.000 | 425 | 192 | 5 | 4 | 417 | 14 | 437 | 1.63e-143 | 417 |
| Msa1320850 | AT1G62540.1 | 50.831 | 421 | 199 | 4 | 4 | 416 | 13 | 433 | 3.33e-143 | 416 |
| Msa1320850 | AT1G62540.2 | 48.655 | 446 | 196 | 6 | 4 | 416 | 13 | 458 | 2.01e-139 | 408 |
| Msa1320850 | AT1G62570.1 | 49.645 | 423 | 201 | 5 | 4 | 416 | 13 | 433 | 9.32e-139 | 405 |
| Msa1320850 | AT1G62580.1 | 48.472 | 458 | 191 | 8 | 4 | 417 | 14 | 470 | 2.81e-136 | 400 |
| Msa1320850 | AT1G62600.2 | 53.050 | 377 | 167 | 3 | 4 | 370 | 13 | 389 | 6.58e-135 | 393 |
| Msa1320850 | AT1G62560.2 | 50.660 | 379 | 177 | 5 | 4 | 374 | 13 | 389 | 1.43e-134 | 392 |
| Msa1320850 | AT1G62540.3 | 48.694 | 421 | 190 | 6 | 4 | 416 | 13 | 415 | 4.02e-132 | 387 |
| Msa1320850 | AT1G63340.1 | 47.281 | 423 | 175 | 5 | 4 | 417 | 14 | 397 | 8.00e-129 | 379 |
| Msa1320850 | AT1G63370.2 | 54.799 | 323 | 138 | 3 | 4 | 318 | 13 | 335 | 3.32e-123 | 361 |
| Msa1320850 | AT5G61290.1 | 44.342 | 433 | 214 | 7 | 4 | 416 | 16 | 441 | 4.52e-121 | 360 |
| Msa1320850 | AT1G12200.2 | 56.037 | 323 | 131 | 3 | 4 | 316 | 14 | 335 | 6.41e-119 | 352 |
| Msa1320850 | AT5G07800.1 | 42.069 | 435 | 225 | 9 | 3 | 416 | 15 | 443 | 2.83e-112 | 338 |
| Msa1320850 | AT1G62580.3 | 54.079 | 331 | 134 | 3 | 4 | 316 | 14 | 344 | 2.13e-110 | 329 |
| Msa1320850 | AT1G63390.1 | 56.643 | 143 | 54 | 2 | 4 | 138 | 13 | 155 | 6.32e-41 | 143 |
| Msa1320850 | AT5G45180.1 | 24.167 | 480 | 239 | 21 | 3 | 389 | 12 | 459 | 1.99e-18 | 87.4 |
| Msa1320850 | AT1G19250.1 | 29.046 | 241 | 115 | 8 | 3 | 211 | 12 | 228 | 2.71e-16 | 81.3 |
| Msa1320850 | AT4G13260.2 | 22.596 | 208 | 135 | 4 | 6 | 211 | 30 | 213 | 9.76e-13 | 69.3 |
| Msa1320850 | AT4G13260.1 | 22.596 | 208 | 135 | 4 | 6 | 211 | 30 | 213 | 2.11e-12 | 68.9 |
| Msa1320850 | AT5G11320.2 | 22.330 | 206 | 132 | 4 | 6 | 211 | 19 | 196 | 4.12e-12 | 67.8 |
| Msa1320850 | AT5G11320.1 | 22.330 | 206 | 132 | 4 | 6 | 211 | 19 | 196 | 1.05e-11 | 66.6 |
| Msa1320850 | AT1G04610.1 | 21.429 | 210 | 136 | 3 | 6 | 210 | 39 | 224 | 5.70e-11 | 64.7 |
Find 118 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATTTAGTTTGAAGTATT+TGG | 0.138986 | 8_4:-25689205 | Msa1320850:three_prime_UTR |
| CTGTGATCCGAGAACGTTTC+CGG | 0.221154 | 8_4:-25692421 | Msa1320850:CDS |
| TCATTCCATACGTCCGTTTC+AGG | 0.249205 | 8_4:-25690548 | Msa1320850:intron |
| CCGAGACTTGCTTTGGTTCC+TGG | 0.252034 | 8_4:-25692204 | Msa1320850:CDS |
| GCTCCATGGCTCTCGTTCAT+TGG | 0.314954 | 8_4:-25690818 | Msa1320850:CDS |
| GAAGAATTTACAGGCGAGTT+TGG | 0.322374 | 8_4:-25692372 | Msa1320850:CDS |
| ATGAATGGGATGATAACTAT+TGG | 0.345252 | 8_4:-25689312 | Msa1320850:CDS |
| GAATGAATCAGCTTCCTAAA+AGG | 0.358411 | 8_4:-25689275 | Msa1320850:exon |
| TTACCCTGTACAGTGAATTA+TGG | 0.368004 | 8_4:+25691061 | None:intergenic |
| CACTACCTCCGTTTCAAATC+GGG | 0.369575 | 8_4:+25692335 | None:intergenic |
| GGTTGCCTCCGTTAGAAGAT+TGG | 0.375234 | 8_4:-25689387 | Msa1320850:CDS |
| AACTTCATACCCTTCAATAG+TGG | 0.379745 | 8_4:+25691297 | None:intergenic |
| CTGTGAACTGTTTCTCTGGT+TGG | 0.381244 | 8_4:+25692525 | None:intergenic |
| TCACTACCTCCGTTTCAAAT+CGG | 0.382379 | 8_4:+25692334 | None:intergenic |
| ATTCCTTTCCTCGAAACTAA+TGG | 0.383726 | 8_4:-25690905 | Msa1320850:CDS |
| GAAGCGGTTATTGTGTGTTC+AGG | 0.389205 | 8_4:-25692240 | Msa1320850:CDS |
| ATACCCTTCAATAGTGGATT+CGG | 0.390856 | 8_4:+25691303 | None:intergenic |
| TGTGAACTGTTTCTCTGGTT+GGG | 0.399952 | 8_4:+25692526 | None:intergenic |
| ACAGGCGAGTTTGGAATTCA+TGG | 0.400299 | 8_4:-25692363 | Msa1320850:CDS |
| TGTGATCCGAGAACGTTTCC+GGG | 0.400644 | 8_4:-25692420 | Msa1320850:CDS |
| TCATGACCCGGAAACGTTCT+CGG | 0.402567 | 8_4:+25692414 | None:intergenic |
| TGTGGAACCGAGACTTGCTT+TGG | 0.402751 | 8_4:-25692211 | Msa1320850:CDS |
| GGCGATGAGGCCGGAGACTC+CGG | 0.404278 | 8_4:+25692662 | None:intergenic |
| TTGAGAGGAAAGGGAAGGAC+TGG | 0.407090 | 8_4:-25692308 | Msa1320850:CDS |
| TTGTTCACATAAATAAAGAT+AGG | 0.410064 | 8_4:-25689091 | Msa1320850:three_prime_UTR |
| CGGATCACAGGATTCTTGCT+TGG | 0.413387 | 8_4:+25692434 | None:intergenic |
| CAATGGCTAGCGGCACAGAT+TGG | 0.414104 | 8_4:-25689409 | Msa1320850:CDS |
| GCCTTCCTGTTGTAGCTCCT+TGG | 0.421074 | 8_4:+25692638 | None:intergenic |
| TTCCTCCTTCGCTGGCTCCA+TGG | 0.424941 | 8_4:-25690832 | Msa1320850:CDS |
| GACATCTCAAAAGATATTGC+AGG | 0.428767 | 8_4:-25691357 | Msa1320850:CDS |
| TAGTGAAAGTTGAGAGGAAA+GGG | 0.433156 | 8_4:-25692317 | Msa1320850:CDS |
| AAATCTTCCAAGGCAAATCA+TGG | 0.439066 | 8_4:-25692478 | Msa1320850:CDS |
| AGGATTCTTGCTTGGACAAA+GGG | 0.442434 | 8_4:+25692442 | None:intergenic |
| ATTAAATGTGTATATGAAGA+TGG | 0.442499 | 8_4:-25691125 | Msa1320850:CDS |
| TTACTATTCCATTAGTTTCG+AGG | 0.445234 | 8_4:+25690897 | None:intergenic |
| GTGATCGGCGCCGGAGTCTC+CGG | 0.449086 | 8_4:-25692672 | Msa1320850:CDS |
| CCTGGTATTGAAAACTTTCG+TGG | 0.451982 | 8_4:-25692186 | Msa1320850:CDS |
| GGCTTGGTTGCCTTTGAAGA+TGG | 0.455524 | 8_4:-25691104 | Msa1320850:CDS |
| CGCCGCCAAGGAGCTACAAC+AGG | 0.458403 | 8_4:-25692643 | Msa1320850:CDS |
| ACTGCTGTGAACTGTTTCTC+TGG | 0.461299 | 8_4:+25692521 | None:intergenic |
| ACCTACTGAAGAAGAAATGA+TGG | 0.467935 | 8_4:-25690629 | Msa1320850:CDS |
| AAGAATCCCATGATTTGCCT+TGG | 0.478861 | 8_4:+25692471 | None:intergenic |
| CAGGATTCTTGCTTGGACAA+AGG | 0.483541 | 8_4:+25692441 | None:intergenic |
| ATGGTTAAAGTTGCAGTGAT+CGG | 0.483813 | 8_4:-25692687 | Msa1320850:CDS |
| AATGGCTAGCGGCACAGATT+GGG | 0.485605 | 8_4:-25689408 | Msa1320850:CDS |
| GAGAAGAACAACCGCGTTGG+AGG | 0.491903 | 8_4:-25692597 | Msa1320850:CDS |
| TTGGATGGACAATATGTTGA+TGG | 0.492691 | 8_4:-25689368 | Msa1320850:CDS |
| ACTATTGAAGGGTATGAAGT+TGG | 0.493692 | 8_4:-25691295 | Msa1320850:CDS |
| TGGGTTGACCCGATTTGAAA+CGG | 0.496788 | 8_4:-25692343 | Msa1320850:CDS |
| CTCCTTGGCGGCGATGAGGC+CGG | 0.501222 | 8_4:+25692653 | None:intergenic |
| TTAATGCTGATTGTTACATA+AGG | 0.504793 | 8_4:-25689236 | Msa1320850:three_prime_UTR |
| ATTCCATTAGTTTCGAGGAA+AGG | 0.505621 | 8_4:+25690902 | None:intergenic |
| TGAAATGTATAGAGATGAAT+GGG | 0.506026 | 8_4:-25689326 | Msa1320850:CDS |
| TAAAGACATATATCGCATCT+TGG | 0.506300 | 8_4:-25690599 | Msa1320850:CDS |
| AGCTGATTCATTCTGAATGA+TGG | 0.509144 | 8_4:+25689285 | None:intergenic |
| TGAATGGGATGATAACTATT+GGG | 0.513303 | 8_4:-25689311 | Msa1320850:CDS |
| ACAAACGCAAATACCTGAAA+CGG | 0.515007 | 8_4:+25690535 | None:intergenic |
| CGAAGCATTTCTTCATGACC+CGG | 0.517432 | 8_4:+25692402 | None:intergenic |
| ATGGAATGAGTGTAACGCTT+GGG | 0.523974 | 8_4:+25690562 | None:intergenic |
| AGCCATGGAGCCAGCGAAGG+AGG | 0.524115 | 8_4:+25690830 | None:intergenic |
| AAATACCTGAAACGGACGTA+TGG | 0.525652 | 8_4:+25690543 | None:intergenic |
| TGAGAGGAAAGGGAAGGACT+GGG | 0.526653 | 8_4:-25692307 | Msa1320850:CDS |
| CTCCGGCCTCATCGCCGCCA+AGG | 0.529871 | 8_4:-25692655 | Msa1320850:CDS |
| GATGCCATAATTCACTGTAC+AGG | 0.531205 | 8_4:-25691065 | Msa1320850:CDS |
| TATCACGTTCTTAACATGCA+TGG | 0.531481 | 8_4:+25692796 | None:intergenic |
| TCCTCACTCTTTCAAAGACC+AGG | 0.534154 | 8_4:-25692133 | Msa1320850:intron |
| CAGGCGAGTTTGGAATTCAT+GGG | 0.537921 | 8_4:-25692362 | Msa1320850:CDS |
| ATGAAATGTATAGAGATGAA+TGG | 0.538896 | 8_4:-25689327 | Msa1320850:CDS |
| TTCCTGTTGTAGCTCCTTGG+CGG | 0.540823 | 8_4:+25692641 | None:intergenic |
| CGATTGAAGATAATCGCGTT+GGG | 0.546471 | 8_4:-25690874 | Msa1320850:CDS |
| CGGAAACGTTCTCGGATCAC+AGG | 0.547744 | 8_4:+25692422 | None:intergenic |
| ATCTTTATTTATGTGAACAA+AGG | 0.549207 | 8_4:+25689094 | None:intergenic |
| TCTCGAAAACGACGACGTTG+TGG | 0.551159 | 8_4:+25692616 | None:intergenic |
| GAGAGCCATGGAGCCAGCGA+AGG | 0.551638 | 8_4:+25690827 | None:intergenic |
| ACAACCGCGTTGGAGGAACC+TGG | 0.554708 | 8_4:-25692590 | Msa1320850:CDS |
| TCCATCATTTCTTCTTCAGT+AGG | 0.556672 | 8_4:+25690628 | None:intergenic |
| ACGATTGAAGATAATCGCGT+TGG | 0.558753 | 8_4:-25690875 | Msa1320850:CDS |
| TAAAACTCTTGCAACCCACT+TGG | 0.561189 | 8_4:+25690669 | None:intergenic |
| AGGACTGGGTTGTTGAGTCG+AGG | 0.562852 | 8_4:-25692293 | Msa1320850:CDS |
| AAAGTTGCAGTGATCGGCGC+CGG | 0.565896 | 8_4:-25692681 | Msa1320850:CDS |
| AGTAGAGAATCCATCTTCAA+AGG | 0.568751 | 8_4:+25691094 | None:intergenic |
| CTTTACGCACAAATCTTCCA+AGG | 0.568859 | 8_4:-25692488 | Msa1320850:CDS |
| TTCGAGAAGAACAACCGCGT+TGG | 0.570371 | 8_4:-25692600 | Msa1320850:CDS |
| AAAACCGAATCCACTATTGA+AGG | 0.571520 | 8_4:-25691307 | Msa1320850:CDS |
| CGGAGGTAGTGAAAGTTGAG+AGG | 0.573195 | 8_4:-25692323 | Msa1320850:CDS |
| GTAGCTCCTTGGCGGCGATG+AGG | 0.577088 | 8_4:+25692649 | None:intergenic |
| GCCTCCGTTAGAAGATTGGA+TGG | 0.580895 | 8_4:-25689383 | Msa1320850:CDS |
| AATCTTCCAAGGCAAATCAT+GGG | 0.585719 | 8_4:-25692477 | Msa1320850:CDS |
| AGATATTGCAGGAGTTGCAA+AGG | 0.586378 | 8_4:-25691346 | Msa1320850:CDS |
| GTAGTGAAAGTTGAGAGGAA+AGG | 0.586811 | 8_4:-25692318 | Msa1320850:CDS |
| AAACCGAATCCACTATTGAA+GGG | 0.595030 | 8_4:-25691306 | Msa1320850:CDS |
| GGACTGGGTTGTTGAGTCGA+GGG | 0.595708 | 8_4:-25692292 | Msa1320850:CDS |
| CTGGTTGGGTCTATACTAAG+AGG | 0.600004 | 8_4:+25692540 | None:intergenic |
| TGGGTTGTTGAGTCGAGGGG+AGG | 0.604541 | 8_4:-25692288 | Msa1320850:CDS |
| GCCAAGGAGCTACAACAGGA+AGG | 0.605200 | 8_4:-25692639 | Msa1320850:CDS |
| CCAGGAACCAAAGCAAGTCT+CGG | 0.606520 | 8_4:+25692204 | None:intergenic |
| AAACCAATGAACGAGAGCCA+TGG | 0.606742 | 8_4:+25690815 | None:intergenic |
| GAAAGTTGAGAGGAAAGGGA+AGG | 0.606852 | 8_4:-25692313 | Msa1320850:CDS |
| GAAGATTTGTGCGTAAAGAG+TGG | 0.607471 | 8_4:+25692493 | None:intergenic |
| TGGGTCTATACTAAGAGGAT+CGG | 0.608316 | 8_4:+25692545 | None:intergenic |
| ATGTGTATATGAAGATGGCT+TGG | 0.608479 | 8_4:-25691120 | Msa1320850:CDS |
| TTGTCCATCCAATCTTCTAA+CGG | 0.613321 | 8_4:+25689379 | None:intergenic |
| TATGGAATGAGTGTAACGCT+TGG | 0.615376 | 8_4:+25690561 | None:intergenic |
| AATTGAGTTACAAGCCAAGT+GGG | 0.620693 | 8_4:-25690683 | Msa1320850:CDS |
| ATGCCATAATTCACTGTACA+GGG | 0.625503 | 8_4:-25691064 | Msa1320850:intron |
| CAATATATGTTTCCATACTG+TGG | 0.626086 | 8_4:-25691262 | Msa1320850:intron |
| GAGTCAAGAAGTGTTTGAAG+CGG | 0.628510 | 8_4:-25692256 | Msa1320850:CDS |
| ACCTGGTCTTTGAAAGAGTG+AGG | 0.636343 | 8_4:+25692132 | None:intergenic |
| TGCTTGTCAACTAATCACGA+TGG | 0.636656 | 8_4:-25692706 | Msa1320850:exon |
| GACTGGGTTGTTGAGTCGAG+GGG | 0.650988 | 8_4:-25692291 | Msa1320850:CDS |
| TAATTGAGTTACAAGCCAAG+TGG | 0.658830 | 8_4:-25690684 | Msa1320850:CDS |
| TCCATCCAATCTTCTAACGG+AGG | 0.663161 | 8_4:+25689382 | None:intergenic |
| AGACATATATCGCATCTTGG+AGG | 0.672722 | 8_4:-25690596 | Msa1320850:CDS |
| GTCAGGCTGACTACAAACAA+TGG | 0.679900 | 8_4:-25689426 | Msa1320850:intron |
| TAGTTTCGAGGAAAGGAATG+CGG | 0.680554 | 8_4:+25690909 | None:intergenic |
| TGACTACAAACAATGGCTAG+CGG | 0.698143 | 8_4:-25689419 | Msa1320850:CDS |
| GTTGACCCGATTTGAAACGG+AGG | 0.739459 | 8_4:-25692340 | Msa1320850:CDS |
| ATATCCAGGTTCCTCCAACG+CGG | 0.760535 | 8_4:+25692586 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAGAAAATATATTTTCA+GGG | + | chr8_4:25689104-25689123 | None:intergenic | 10.0% |
| !!! | TTAAAAGAAAATATATTTTC+AGG | + | chr8_4:25689105-25689124 | None:intergenic | 10.0% |
| !!! | AAATATTTAGATTTAGATTT+TGG | - | chr8_4:25689923-25689942 | Msa1320850:intron | 10.0% |
| !!! | AAAAGAAAATATATTTTCAG+GGG | + | chr8_4:25689103-25689122 | None:intergenic | 15.0% |
| !!! | ATTTTCCAAATTTGAAAAAA+TGG | - | chr8_4:25689820-25689839 | Msa1320850:intron | 15.0% |
| !!! | TAAAACCATTTTTTCAAATT+TGG | + | chr8_4:25689828-25689847 | None:intergenic | 15.0% |
| !! | ATTTAATACGTTGAAATTAT+TGG | - | chr8_4:25689852-25689871 | Msa1320850:intron | 15.0% |
| !!! | ATTAATTTTCCAAACAAAAT+AGG | + | chr8_4:25690490-25690509 | None:intergenic | 15.0% |
| !!! | ATTTTGTTTGGAAAATTAAT+TGG | - | chr8_4:25690490-25690509 | Msa1320850:intron | 15.0% |
| !! | AATATCTATCATATAAAGTA+TGG | + | chr8_4:25690723-25690742 | None:intergenic | 15.0% |
| !! | ATATAAACTAATATTGTAAC+AGG | - | chr8_4:25690982-25691001 | Msa1320850:intron | 15.0% |
| !! | ATCATTAAAATTATAAGCAT+CGG | + | chr8_4:25692397-25692416 | None:intergenic | 15.0% |
| !!! | ATTAAGATGAAGTATTTCAA+TGG | - | chr8_4:25689880-25689899 | Msa1320850:intron | 20.0% |
| !! | AGACTAAAAAGATTAACATA+TGG | + | chr8_4:25690078-25690097 | None:intergenic | 20.0% |
| !! | ATTAAATGTGTATATGAAGA+TGG | - | chr8_4:25690797-25690816 | Msa1320850:intron | 20.0% |
| !!! | CTAAGAAATTAATCATTTTG+AGG | - | chr8_4:25690958-25690977 | Msa1320850:intron | 20.0% |
| !!! | ATAAAATGCTAATTTGCTTA+TGG | + | chr8_4:25692209-25692228 | None:intergenic | 20.0% |
| !! | TACAAGTAAATAGTTAAACT+CGG | + | chr8_4:25692466-25692485 | None:intergenic | 20.0% |
| !!! | AGAATTTAGTTTGAAGTATT+TGG | - | chr8_4:25692717-25692736 | Msa1320850:five_prime_UTR | 20.0% |
| !!! | ATCTTTATTTATGTGAACAA+AGG | + | chr8_4:25692831-25692850 | None:intergenic | 20.0% |
| !!! | GTGTTGTTTTTACAAAATCA+CGG | - | chr8_4:25689987-25690006 | Msa1320850:intron | 25.0% |
| ! | AAGAAAACACAATTTAATCC+AGG | - | chr8_4:25690046-25690065 | Msa1320850:intron | 25.0% |
| !! | AGGAGAAAGTTCATTATTTT+TGG | - | chr8_4:25690217-25690236 | Msa1320850:intron | 25.0% |
| !!! | AATTGTGTTTTTGTTTGAGT+CGG | - | chr8_4:25690369-25690388 | Msa1320850:intron | 25.0% |
| !! | TGTTTAATGCCTATTTTGTT+TGG | - | chr8_4:25690478-25690497 | Msa1320850:intron | 25.0% |
| !!! | TACAGGTTGTGATTTTAATT+GGG | - | chr8_4:25690524-25690543 | Msa1320850:intron | 25.0% |
| !! | ATTTTTAACATACCACAGTA+TGG | + | chr8_4:25690675-25690694 | None:intergenic | 25.0% |
| ! | TGGAGATATTTATTATGAGA+CGG | + | chr8_4:25690703-25690722 | None:intergenic | 25.0% |
| ! | TAAAAGAAAAAATCCGTTGA+AGG | + | chr8_4:25690910-25690929 | None:intergenic | 25.0% |
| ! | TTACAATAGAAATAGTTTCC+TGG | + | chr8_4:25691221-25691240 | None:intergenic | 25.0% |
| !! | GGATAATTTTGCTCAATTAA+CGG | - | chr8_4:25691436-25691455 | Msa1320850:intron | 25.0% |
| !!! | TCAATTAACGGATTTAAGAT+AGG | - | chr8_4:25691448-25691467 | Msa1320850:intron | 25.0% |
| ! | TTAAGCATTTCTCTAAACAA+TGG | - | chr8_4:25691580-25691599 | Msa1320850:intron | 25.0% |
| !! | TCATCTGAAATTGTATGTAA+TGG | - | chr8_4:25691645-25691664 | Msa1320850:intron | 25.0% |
| ! | TGATATTACATTAGATGCAA+TGG | - | chr8_4:25691789-25691808 | Msa1320850:intron | 25.0% |
| !! | CACATCTATATGTTTTCATA+GGG | - | chr8_4:25691853-25691872 | Msa1320850:intron | 25.0% |
| ! | CTGAACTTGAGTTAAAAAAA+TGG | - | chr8_4:25691970-25691989 | Msa1320850:intron | 25.0% |
| !!! | TTATGTCATGTTTTTTCTAG+AGG | - | chr8_4:25692113-25692132 | Msa1320850:intron | 25.0% |
| !!! | GTTACTAGAGAATGTTTTAA+AGG | - | chr8_4:25692310-25692329 | Msa1320850:CDS | 25.0% |
| !! | AATCTCTCGATTTTACAAAT+TGG | + | chr8_4:25692367-25692386 | None:intergenic | 25.0% |
| ! | AAGAATTTATAATCGGATAC+AGG | + | chr8_4:25692443-25692462 | None:intergenic | 25.0% |
| ! | AACTCGGAAGAATTTATAAT+CGG | + | chr8_4:25692450-25692469 | None:intergenic | 25.0% |
| ! | ATGAAATGTATAGAGATGAA+TGG | - | chr8_4:25692595-25692614 | Msa1320850:CDS | 25.0% |
| ! | TGAAATGTATAGAGATGAAT+GGG | - | chr8_4:25692596-25692615 | Msa1320850:CDS | 25.0% |
| !! | ATTCAATATCTTTGCCTTTT+AGG | + | chr8_4:25692664-25692683 | None:intergenic | 25.0% |
| !! | TTAATGCTGATTGTTACATA+AGG | - | chr8_4:25692686-25692705 | Msa1320850:CDS | 25.0% |
| ! | ACACTGTGTTTTTCTTTTGA+AGG | + | chr8_4:25689165-25689184 | None:intergenic | 30.0% |
| !!! | TGAAGAAATGCTTCGTTTTT+TGG | - | chr8_4:25689528-25689547 | Msa1320850:intron | 30.0% |
| !!! | CGTTTTTTGGAAGAATTTAC+AGG | - | chr8_4:25689541-25689560 | Msa1320850:intron | 30.0% |
| TTTGGAAAATGTAATGTACC+TGG | + | chr8_4:25689810-25689829 | None:intergenic | 30.0% | |
| CAATGGATATTAATGCAAGT+AGG | - | chr8_4:25689897-25689916 | Msa1320850:intron | 30.0% | |
| ATTAACATATGGAACAATCC+TGG | + | chr8_4:25690067-25690086 | None:intergenic | 30.0% | |
| GTTAGTAGAGTCAACAAAAT+TGG | + | chr8_4:25690156-25690175 | None:intergenic | 30.0% | |
| AATGAACTTTCTCCTATGAA+TGG | + | chr8_4:25690212-25690231 | None:intergenic | 30.0% | |
| TCAAAGATCAAAGTGACTAA+TGG | - | chr8_4:25690327-25690346 | Msa1320850:intron | 30.0% | |
| ! | AATTGGTAATTACTACCTAC+AGG | - | chr8_4:25690507-25690526 | Msa1320850:intron | 30.0% |
| CAATTAAAATCACAACCTGT+AGG | + | chr8_4:25690525-25690544 | None:intergenic | 30.0% | |
| !! | CTACAGGTTGTGATTTTAAT+TGG | - | chr8_4:25690523-25690542 | Msa1320850:intron | 30.0% |
| CAATATATGTTTCCATACTG+TGG | - | chr8_4:25690660-25690679 | Msa1320850:CDS | 30.0% | |
| ! | TAACATTTTCTCACCTTCAA+CGG | - | chr8_4:25690894-25690913 | Msa1320850:CDS | 30.0% |
| ! | TTACTATTCCATTAGTTTCG+AGG | + | chr8_4:25691028-25691047 | None:intergenic | 30.0% |
| GGAAAAACATGTTTGTATAG+TGG | + | chr8_4:25691074-25691093 | None:intergenic | 30.0% | |
| TAAAGACATATATCGCATCT+TGG | - | chr8_4:25691323-25691342 | Msa1320850:CDS | 30.0% | |
| ATCCAATGAAATGTATAGTG+AGG | + | chr8_4:25691420-25691439 | None:intergenic | 30.0% | |
| ! | TCAAATAAGCATCGTTCAAT+TGG | - | chr8_4:25691545-25691564 | Msa1320850:intron | 30.0% |
| ! | AATGGAGACTTTTCGTTTAT+AGG | - | chr8_4:25691598-25691617 | Msa1320850:intron | 30.0% |
| ! | GTATTTGTGAGTTGAATTTG+AGG | - | chr8_4:25691690-25691709 | Msa1320850:intron | 30.0% |
| !! | TTGAATTTGAGGCTTTTGAA+GGG | - | chr8_4:25691701-25691720 | Msa1320850:intron | 30.0% |
| CCTATGAAAACATATAGATG+TGG | + | chr8_4:25691855-25691874 | None:intergenic | 30.0% | |
| ! | CCACATCTATATGTTTTCAT+AGG | - | chr8_4:25691852-25691871 | Msa1320850:intron | 30.0% |
| ! | ATATGTTTTCATAGGGAACT+AGG | - | chr8_4:25691860-25691879 | Msa1320850:intron | 30.0% |
| ! | TATGTTTTCATAGGGAACTA+GGG | - | chr8_4:25691861-25691880 | Msa1320850:intron | 30.0% |
| AAATTAGTTCCTTATAGAGC+TGG | + | chr8_4:25692082-25692101 | None:intergenic | 30.0% | |
| !!! | GTTTTTTCTAGAGGAAGTTT+AGG | - | chr8_4:25692122-25692141 | Msa1320850:intron | 30.0% |
| ACTTGTAAAATTACTCTGTC+AGG | - | chr8_4:25692479-25692498 | Msa1320850:CDS | 30.0% | |
| ATGAATGGGATGATAACTAT+TGG | - | chr8_4:25692610-25692629 | Msa1320850:CDS | 30.0% | |
| TGAATGGGATGATAACTATT+GGG | - | chr8_4:25692611-25692630 | Msa1320850:CDS | 30.0% | |
| TATCACGTTCTTAACATGCA+TGG | + | chr8_4:25689129-25689148 | None:intergenic | 35.0% | |
| !! | CTGTGTTTTTCTTTTGAAGG+AGG | + | chr8_4:25689162-25689181 | None:intergenic | 35.0% |
| !!! | GACTGTTTTAGTCAAAGTTC+AGG | + | chr8_4:25689189-25689208 | None:intergenic | 35.0% |
| ATGGTTAAAGTTGCAGTGAT+CGG | - | chr8_4:25689235-25689254 | Msa1320850:three_prime_UTR | 35.0% | |
| !!! | TGTTTTTGGAGTGTATATCC+AGG | + | chr8_4:25689353-25689372 | None:intergenic | 35.0% |
| AAATCTTCCAAGGCAAATCA+TGG | - | chr8_4:25689444-25689463 | Msa1320850:intron | 35.0% | |
| AATCTTCCAAGGCAAATCAT+GGG | - | chr8_4:25689445-25689464 | Msa1320850:intron | 35.0% | |
| TAGTGAAAGTTGAGAGGAAA+GGG | - | chr8_4:25689605-25689624 | Msa1320850:intron | 35.0% | |
| GTATTAGAGAAAGACACAGA+CGG | - | chr8_4:25690110-25690129 | Msa1320850:intron | 35.0% | |
| GACTCTACTAACACATTTGT+TGG | - | chr8_4:25690164-25690183 | Msa1320850:intron | 35.0% | |
| GACTCTACTAAACCATTCAT+AGG | - | chr8_4:25690197-25690216 | Msa1320850:intron | 35.0% | |
| AGACTTCTGATGTGTTATCA+GGG | + | chr8_4:25690260-25690279 | None:intergenic | 35.0% | |
| TAGACTTCTGATGTGTTATC+AGG | + | chr8_4:25690261-25690280 | None:intergenic | 35.0% | |
| ! | TATAGCGCAAACCATCATTT+TGG | + | chr8_4:25690429-25690448 | None:intergenic | 35.0% |
| !!! | GTTGTGATTTTAATTGGGCT+AGG | - | chr8_4:25690529-25690548 | Msa1320850:intron | 35.0% |
| GACATCTCAAAAGATATTGC+AGG | - | chr8_4:25690565-25690584 | Msa1320850:CDS | 35.0% | |
| AAAACCGAATCCACTATTGA+AGG | - | chr8_4:25690615-25690634 | Msa1320850:CDS | 35.0% | |
| AAACCGAATCCACTATTGAA+GGG | - | chr8_4:25690616-25690635 | Msa1320850:CDS | 35.0% | |
| !! | ATACCCTTCAATAGTGGATT+CGG | + | chr8_4:25690622-25690641 | None:intergenic | 35.0% |
| AACTTCATACCCTTCAATAG+TGG | + | chr8_4:25690628-25690647 | None:intergenic | 35.0% | |
| ! | ACTATTGAAGGGTATGAAGT+TGG | - | chr8_4:25690627-25690646 | Msa1320850:CDS | 35.0% |
| ATGTGTATATGAAGATGGCT+TGG | - | chr8_4:25690802-25690821 | Msa1320850:intron | 35.0% | |
| AGTAGAGAATCCATCTTCAA+AGG | + | chr8_4:25690831-25690850 | None:intergenic | 35.0% | |
| ATGCCATAATTCACTGTACA+GGG | - | chr8_4:25690858-25690877 | Msa1320850:CDS | 35.0% | |
| TTACCCTGTACAGTGAATTA+TGG | + | chr8_4:25690864-25690883 | None:intergenic | 35.0% | |
| ATTCCTTTCCTCGAAACTAA+TGG | - | chr8_4:25691017-25691036 | Msa1320850:intron | 35.0% | |
| ! | ATTCCATTAGTTTCGAGGAA+AGG | + | chr8_4:25691023-25691042 | None:intergenic | 35.0% |
| TAATTGATTAAGACTTGCCG+TGG | - | chr8_4:25691195-25691214 | Msa1320850:intron | 35.0% | |
| TAATTGAGTTACAAGCCAAG+TGG | - | chr8_4:25691238-25691257 | Msa1320850:intron | 35.0% | |
| AATTGAGTTACAAGCCAAGT+GGG | - | chr8_4:25691239-25691258 | Msa1320850:intron | 35.0% | |
| ACCTACTGAAGAAGAAATGA+TGG | - | chr8_4:25691293-25691312 | Msa1320850:CDS | 35.0% | |
| TCCATCATTTCTTCTTCAGT+AGG | + | chr8_4:25691297-25691316 | None:intergenic | 35.0% | |
| ACAAACGCAAATACCTGAAA+CGG | + | chr8_4:25691390-25691409 | None:intergenic | 35.0% | |
| CTCCTCACTATACATTTCAT+TGG | - | chr8_4:25691415-25691434 | Msa1320850:intron | 35.0% | |
| ! | AAGCATCGTTCAATTGGTAA+AGG | - | chr8_4:25691551-25691570 | Msa1320850:intron | 35.0% |
| AACTCACAAATACACCCTAA+GGG | + | chr8_4:25691683-25691702 | None:intergenic | 35.0% | |
| !! | GTTGAATTTGAGGCTTTTGA+AGG | - | chr8_4:25691700-25691719 | Msa1320850:intron | 35.0% |
| !! | GAACTATTATCGAGTTGGTT+CGG | + | chr8_4:25691898-25691917 | None:intergenic | 35.0% |
| GAACCAACTCGATAATAGTT+CGG | - | chr8_4:25691897-25691916 | Msa1320850:intron | 35.0% | |
| GACAATTAACTCGTTGAACT+TGG | - | chr8_4:25691930-25691949 | Msa1320850:intron | 35.0% | |
| TAACTCAAGTTCAGCTCATT+TGG | + | chr8_4:25691964-25691983 | None:intergenic | 35.0% | |
| TGACTCGATAAGAATTGACT+CGG | + | chr8_4:25692025-25692044 | None:intergenic | 35.0% | |
| TGATGTGACACGTTAATATG+CGG | + | chr8_4:25692265-25692284 | None:intergenic | 35.0% | |
| TTGTCCATCCAATCTTCTAA+CGG | + | chr8_4:25692546-25692565 | None:intergenic | 35.0% | |
| TTGGATGGACAATATGTTGA+TGG | - | chr8_4:25692554-25692573 | Msa1320850:CDS | 35.0% | |
| ! | AGCTGATTCATTCTGAATGA+TGG | + | chr8_4:25692640-25692659 | None:intergenic | 35.0% |
| GAATGAATCAGCTTCCTAAA+AGG | - | chr8_4:25692647-25692666 | Msa1320850:CDS | 35.0% | |
| TGCTTGTCAACTAATCACGA+TGG | - | chr8_4:25689216-25689235 | Msa1320850:three_prime_UTR | 40.0% | |
| TGGGTCTATACTAAGAGGAT+CGG | + | chr8_4:25689380-25689399 | None:intergenic | 40.0% | |
| ! | TGTGAACTGTTTCTCTGGTT+GGG | + | chr8_4:25689399-25689418 | None:intergenic | 40.0% |
| GAAGATTTGTGCGTAAAGAG+TGG | + | chr8_4:25689432-25689451 | None:intergenic | 40.0% | |
| CTTTACGCACAAATCTTCCA+AGG | - | chr8_4:25689434-25689453 | Msa1320850:intron | 40.0% | |
| ! | AAGAATCCCATGATTTGCCT+TGG | + | chr8_4:25689454-25689473 | None:intergenic | 40.0% |
| AGGATTCTTGCTTGGACAAA+GGG | + | chr8_4:25689483-25689502 | None:intergenic | 40.0% | |
| GAAGAATTTACAGGCGAGTT+TGG | - | chr8_4:25689550-25689569 | Msa1320850:intron | 40.0% | |
| TCACTACCTCCGTTTCAAAT+CGG | + | chr8_4:25689591-25689610 | None:intergenic | 40.0% | |
| GTAGTGAAAGTTGAGAGGAA+AGG | - | chr8_4:25689604-25689623 | Msa1320850:intron | 40.0% | |
| !! | GAGTCAAGAAGTGTTTGAAG+CGG | - | chr8_4:25689666-25689685 | Msa1320850:intron | 40.0% |
| !! | TGTGTGTTCAGGTCATTTTG+TGG | - | chr8_4:25689693-25689712 | Msa1320850:intron | 40.0% |
| ! | CCACGAAAGTTTTCAATACC+AGG | + | chr8_4:25689739-25689758 | None:intergenic | 40.0% |
| ! | CCTGGTATTGAAAACTTTCG+TGG | - | chr8_4:25689736-25689755 | Msa1320850:intron | 40.0% |
| ACTTCCAGAGACCAAAATGA+TGG | - | chr8_4:25690415-25690434 | Msa1320850:intron | 40.0% | |
| !! | CAAACCATCATTTTGGTCTC+TGG | + | chr8_4:25690422-25690441 | None:intergenic | 40.0% |
| AGATATTGCAGGAGTTGCAA+AGG | - | chr8_4:25690576-25690595 | Msa1320850:CDS | 40.0% | |
| GATGCCATAATTCACTGTAC+AGG | - | chr8_4:25690857-25690876 | Msa1320850:CDS | 40.0% | |
| TAGTTTCGAGGAAAGGAATG+CGG | + | chr8_4:25691016-25691035 | None:intergenic | 40.0% | |
| ACGATTGAAGATAATCGCGT+TGG | - | chr8_4:25691047-25691066 | Msa1320850:intron | 40.0% | |
| CGATTGAAGATAATCGCGTT+GGG | - | chr8_4:25691048-25691067 | Msa1320850:intron | 40.0% | |
| TAGAAATAGTTTCCTGGCCA+CGG | + | chr8_4:25691215-25691234 | None:intergenic | 40.0% | |
| TAAAACTCTTGCAACCCACT+TGG | + | chr8_4:25691256-25691275 | None:intergenic | 40.0% | |
| !! | TGGGTTGCAAGAGTTTTATC+TGG | - | chr8_4:25691258-25691277 | Msa1320850:intron | 40.0% |
| AGACATATATCGCATCTTGG+AGG | - | chr8_4:25691326-25691345 | Msa1320850:CDS | 40.0% | |
| ATGGAATGAGTGTAACGCTT+GGG | + | chr8_4:25691363-25691382 | None:intergenic | 40.0% | |
| TATGGAATGAGTGTAACGCT+TGG | + | chr8_4:25691364-25691383 | None:intergenic | 40.0% | |
| AAATACCTGAAACGGACGTA+TGG | + | chr8_4:25691382-25691401 | None:intergenic | 40.0% | |
| TGGTCAAAATAGAGTCCCTT+AGG | - | chr8_4:25691665-25691684 | Msa1320850:intron | 40.0% | |
| GGTCAAAATAGAGTCCCTTA+GGG | - | chr8_4:25691666-25691685 | Msa1320850:intron | 40.0% | |
| CAACTCACAAATACACCCTA+AGG | + | chr8_4:25691684-25691703 | None:intergenic | 40.0% | |
| CAATGGCATTGCACATGTAT+TGG | - | chr8_4:25691806-25691825 | Msa1320850:intron | 40.0% | |
| GTTCCGAACTATTATCGAGT+TGG | + | chr8_4:25691903-25691922 | None:intergenic | 40.0% | |
| GACTCATTTCCAGCTCTATA+AGG | - | chr8_4:25692070-25692089 | Msa1320850:intron | 40.0% | |
| TGACTACAAACAATGGCTAG+CGG | - | chr8_4:25692503-25692522 | Msa1320850:CDS | 40.0% | |
| ! | AGAGGATCGGAGTCTGTTTT+TGG | + | chr8_4:25689367-25689386 | None:intergenic | 45.0% |
| CTGGTTGGGTCTATACTAAG+AGG | + | chr8_4:25689385-25689404 | None:intergenic | 45.0% | |
| ! | CTGTGAACTGTTTCTCTGGT+TGG | + | chr8_4:25689400-25689419 | None:intergenic | 45.0% |
| ! | ACTGCTGTGAACTGTTTCTC+TGG | + | chr8_4:25689404-25689423 | None:intergenic | 45.0% |
| CAGGATTCTTGCTTGGACAA+AGG | + | chr8_4:25689484-25689503 | None:intergenic | 45.0% | |
| ! | CGAAGCATTTCTTCATGACC+CGG | + | chr8_4:25689523-25689542 | None:intergenic | 45.0% |
| ! | ACAGGCGAGTTTGGAATTCA+TGG | - | chr8_4:25689559-25689578 | Msa1320850:intron | 45.0% |
| ! | CAGGCGAGTTTGGAATTCAT+GGG | - | chr8_4:25689560-25689579 | Msa1320850:intron | 45.0% |
| ! | TGGGTTGACCCGATTTGAAA+CGG | - | chr8_4:25689579-25689598 | Msa1320850:intron | 45.0% |
| CACTACCTCCGTTTCAAATC+GGG | + | chr8_4:25689590-25689609 | None:intergenic | 45.0% | |
| GAAAGTTGAGAGGAAAGGGA+AGG | - | chr8_4:25689609-25689628 | Msa1320850:intron | 45.0% | |
| GAAGCGGTTATTGTGTGTTC+AGG | - | chr8_4:25689682-25689701 | Msa1320850:intron | 45.0% | |
| TCCTCACTCTTTCAAAGACC+AGG | - | chr8_4:25689789-25689808 | Msa1320850:intron | 45.0% | |
| ! | ACCTGGTCTTTGAAAGAGTG+AGG | + | chr8_4:25689793-25689812 | None:intergenic | 45.0% |
| ! | ACGGTTGATGTGTGTTCTCA+TGG | - | chr8_4:25690129-25690148 | Msa1320850:intron | 45.0% |
| GACGACGTGTACTAATGAGA+AGG | + | chr8_4:25690287-25690306 | None:intergenic | 45.0% | |
| ! | ACATGTTTTTCCTCCTTCGC+TGG | - | chr8_4:25691082-25691101 | Msa1320850:CDS | 45.0% |
| AAACCAATGAACGAGAGCCA+TGG | + | chr8_4:25691110-25691129 | None:intergenic | 45.0% | |
| TCATTCCATACGTCCGTTTC+AGG | - | chr8_4:25691374-25691393 | Msa1320850:CDS | 45.0% | |
| GTCAGGCTGACTACAAACAA+TGG | - | chr8_4:25692496-25692515 | Msa1320850:CDS | 45.0% | |
| TCCATCCAATCTTCTAACGG+AGG | + | chr8_4:25692543-25692562 | None:intergenic | 45.0% | |
| TTCCTGTTGTAGCTCCTTGG+CGG | + | chr8_4:25689284-25689303 | None:intergenic | 50.0% | |
| TCTCGAAAACGACGACGTTG+TGG | + | chr8_4:25689309-25689328 | None:intergenic | 50.0% | |
| TTCGAGAAGAACAACCGCGT+TGG | - | chr8_4:25689322-25689341 | Msa1320850:CDS | 50.0% | |
| ATATCCAGGTTCCTCCAACG+CGG | + | chr8_4:25689339-25689358 | None:intergenic | 50.0% | |
| CGGATCACAGGATTCTTGCT+TGG | + | chr8_4:25689491-25689510 | None:intergenic | 50.0% | |
| CTGTGATCCGAGAACGTTTC+CGG | - | chr8_4:25689501-25689520 | Msa1320850:intron | 50.0% | |
| TGTGATCCGAGAACGTTTCC+GGG | - | chr8_4:25689502-25689521 | Msa1320850:intron | 50.0% | |
| TCATGACCCGGAAACGTTCT+CGG | + | chr8_4:25689511-25689530 | None:intergenic | 50.0% | |
| ! | GTTGACCCGATTTGAAACGG+AGG | - | chr8_4:25689582-25689601 | Msa1320850:intron | 50.0% |
| CGGAGGTAGTGAAAGTTGAG+AGG | - | chr8_4:25689599-25689618 | Msa1320850:intron | 50.0% | |
| TTGAGAGGAAAGGGAAGGAC+TGG | - | chr8_4:25689614-25689633 | Msa1320850:intron | 50.0% | |
| TGAGAGGAAAGGGAAGGACT+GGG | - | chr8_4:25689615-25689634 | Msa1320850:intron | 50.0% | |
| ! | TGTGGAACCGAGACTTGCTT+TGG | - | chr8_4:25689711-25689730 | Msa1320850:intron | 50.0% |
| CCAGGAACCAAAGCAAGTCT+CGG | + | chr8_4:25689721-25689740 | None:intergenic | 50.0% | |
| ! | GGCTTGGTTGCCTTTGAAGA+TGG | - | chr8_4:25690818-25690837 | Msa1320850:CDS | 50.0% |
| AATGGCTAGCGGCACAGATT+GGG | - | chr8_4:25692514-25692533 | Msa1320850:CDS | 50.0% | |
| GGTTGCCTCCGTTAGAAGAT+TGG | - | chr8_4:25692535-25692554 | Msa1320850:CDS | 50.0% | |
| GCCTCCGTTAGAAGATTGGA+TGG | - | chr8_4:25692539-25692558 | Msa1320850:CDS | 50.0% | |
| AAAGTTGCAGTGATCGGCGC+CGG | - | chr8_4:25689241-25689260 | Msa1320850:three_prime_UTR | 55.0% | |
| GCCAAGGAGCTACAACAGGA+AGG | - | chr8_4:25689283-25689302 | Msa1320850:CDS | 55.0% | |
| GCCTTCCTGTTGTAGCTCCT+TGG | + | chr8_4:25689287-25689306 | None:intergenic | 55.0% | |
| GAGAAGAACAACCGCGTTGG+AGG | - | chr8_4:25689325-25689344 | Msa1320850:CDS | 55.0% | |
| CGGAAACGTTCTCGGATCAC+AGG | + | chr8_4:25689503-25689522 | None:intergenic | 55.0% | |
| AGGACTGGGTTGTTGAGTCG+AGG | - | chr8_4:25689629-25689648 | Msa1320850:intron | 55.0% | |
| GGACTGGGTTGTTGAGTCGA+GGG | - | chr8_4:25689630-25689649 | Msa1320850:intron | 55.0% | |
| GACTGGGTTGTTGAGTCGAG+GGG | - | chr8_4:25689631-25689650 | Msa1320850:intron | 55.0% | |
| ! | CCGAGACTTGCTTTGGTTCC+TGG | - | chr8_4:25689718-25689737 | Msa1320850:intron | 55.0% |
| GCTCCATGGCTCTCGTTCAT+TGG | - | chr8_4:25691104-25691123 | Msa1320850:CDS | 55.0% | |
| GATTAAGACTTGCCGTGGCC+AGG | - | chr8_4:25691200-25691219 | Msa1320850:intron | 55.0% | |
| GAGTCGAACTCGTCTGAGCT+CGG | + | chr8_4:25692050-25692069 | None:intergenic | 55.0% | |
| CAATGGCTAGCGGCACAGAT+TGG | - | chr8_4:25692513-25692532 | Msa1320850:CDS | 55.0% | |
| ACAACCGCGTTGGAGGAACC+TGG | - | chr8_4:25689332-25689351 | Msa1320850:CDS | 60.0% | |
| TGGGTTGTTGAGTCGAGGGG+AGG | - | chr8_4:25689634-25689653 | Msa1320850:intron | 60.0% | |
| !! | TTCCTCCTTCGCTGGCTCCA+TGG | - | chr8_4:25691090-25691109 | Msa1320850:CDS | 60.0% |
| GTAGCTCCTTGGCGGCGATG+AGG | + | chr8_4:25689276-25689295 | None:intergenic | 65.0% | |
| CGCCGCCAAGGAGCTACAAC+AGG | - | chr8_4:25689279-25689298 | Msa1320850:CDS | 65.0% | |
| AGCCATGGAGCCAGCGAAGG+AGG | + | chr8_4:25691095-25691114 | None:intergenic | 65.0% | |
| GAGAGCCATGGAGCCAGCGA+AGG | + | chr8_4:25691098-25691117 | None:intergenic | 65.0% | |
| ! | GTGATCGGCGCCGGAGTCTC+CGG | - | chr8_4:25689250-25689269 | Msa1320850:three_prime_UTR | 70.0% |
| GGCGATGAGGCCGGAGACTC+CGG | + | chr8_4:25689263-25689282 | None:intergenic | 70.0% | |
| CTCCTTGGCGGCGATGAGGC+CGG | + | chr8_4:25689272-25689291 | None:intergenic | 70.0% | |
| CTCCGGCCTCATCGCCGCCA+AGG | - | chr8_4:25689267-25689286 | Msa1320850:exon | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 25689091 | 25692853 | 25689091 | ID=Msa1320850;Name=Msa1320850 |
| chr8_4 | mRNA | 25689091 | 25692853 | 25689091 | ID=Msa1320850-mRNA-1;Parent=Msa1320850;Name=Msa1320850-mRNA-1;_AED=0.08;_eAED=0.08;_QI=118|1|1|1|0.83|0.71|7|188|428 |
| chr8_4 | exon | 25689091 | 25689443 | 25689091 | ID=Msa1320850-mRNA-1:exon:8878;Parent=Msa1320850-mRNA-1 |
| chr8_4 | exon | 25690549 | 25690722 | 25690549 | ID=Msa1320850-mRNA-1:exon:8877;Parent=Msa1320850-mRNA-1 |
| chr8_4 | exon | 25690805 | 25690940 | 25690805 | ID=Msa1320850-mRNA-1:exon:8876;Parent=Msa1320850-mRNA-1 |
| chr8_4 | exon | 25691065 | 25691147 | 25691065 | ID=Msa1320850-mRNA-1:exon:8875;Parent=Msa1320850-mRNA-1 |
| chr8_4 | exon | 25691263 | 25691415 | 25691263 | ID=Msa1320850-mRNA-1:exon:8874;Parent=Msa1320850-mRNA-1 |
| chr8_4 | exon | 25692134 | 25692772 | 25692134 | ID=Msa1320850-mRNA-1:exon:8873;Parent=Msa1320850-mRNA-1 |
| chr8_4 | exon | 25692799 | 25692853 | 25692799 | ID=Msa1320850-mRNA-1:exon:8872;Parent=Msa1320850-mRNA-1 |
| chr8_4 | five_prime_UTR | 25692799 | 25692853 | 25692799 | ID=Msa1320850-mRNA-1:five_prime_utr;Parent=Msa1320850-mRNA-1 |
| chr8_4 | five_prime_UTR | 25692710 | 25692772 | 25692710 | ID=Msa1320850-mRNA-1:five_prime_utr;Parent=Msa1320850-mRNA-1 |
| chr8_4 | CDS | 25692134 | 25692709 | 25692134 | ID=Msa1320850-mRNA-1:cds;Parent=Msa1320850-mRNA-1 |
| chr8_4 | CDS | 25691263 | 25691415 | 25691263 | ID=Msa1320850-mRNA-1:cds;Parent=Msa1320850-mRNA-1 |
| chr8_4 | CDS | 25691065 | 25691147 | 25691065 | ID=Msa1320850-mRNA-1:cds;Parent=Msa1320850-mRNA-1 |
| chr8_4 | CDS | 25690805 | 25690940 | 25690805 | ID=Msa1320850-mRNA-1:cds;Parent=Msa1320850-mRNA-1 |
| chr8_4 | CDS | 25690549 | 25690722 | 25690549 | ID=Msa1320850-mRNA-1:cds;Parent=Msa1320850-mRNA-1 |
| chr8_4 | CDS | 25689279 | 25689443 | 25689279 | ID=Msa1320850-mRNA-1:cds;Parent=Msa1320850-mRNA-1 |
| chr8_4 | three_prime_UTR | 25689091 | 25689278 | 25689091 | ID=Msa1320850-mRNA-1:three_prime_utr;Parent=Msa1320850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
