AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0192300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0192300 MtrunA17_Chr3g0118291 100.000 204 0 0 1 204 1 204 6.78e-150 414
Msa0192300 MtrunA17_Chr2g0282541 99.510 204 1 0 1 204 49 252 1.89e-149 415
Msa0192300 MtrunA17_Chr7g0224171 90.323 62 6 0 1 62 1 62 1.93e-35 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0192300 AT4G16720.1 88.235 204 24 0 1 204 1 204 9.00e-122 343
Msa0192300 AT4G17390.1 87.745 204 25 0 1 204 1 204 1.88e-121 342

Find 95 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATAGTTTGAGAATTCTTT+AGG 0.240913 2_1:-8049007 Msa0192300:three_prime_UTR
CGTGAGACAAACCGAGAAAA+TGG 0.255682 2_1:-8050502 Msa0192300:exon
GGAGGAAGCTTGGTGGCCTT+AGG 0.282780 2_1:-8049830 Msa0192300:CDS
GTTTCCAAGGGTATTGTATA+CGG 0.297546 2_1:-8049927 Msa0192300:CDS
TTGGTAAGCCAGTTGATTCT+TGG 0.325346 2_1:+8049714 None:intergenic
TCCTGACAAAGCTCGCCGTT+TGG 0.353079 2_1:-8050255 Msa0192300:CDS
GATAGTTTGAGAATTCTTTA+GGG 0.355332 2_1:-8049006 Msa0192300:three_prime_UTR
ACAAGTATGTTTCTGAGTTA+TGG 0.369598 2_1:-8050376 Msa0192300:CDS
TTAGGGTTCTCAATTCCTAC+TGG 0.369741 2_1:-8049812 Msa0192300:CDS
CCTGACAAAGCTCGCCGTTT+GGG 0.382164 2_1:-8050254 Msa0192300:CDS
GTCCATCTCGCAGGGCAAAC+TGG 0.382984 2_1:-8049596 Msa0192300:CDS
AGGTTCTTATCTCTGGTGTC+TGG 0.388442 2_1:-8049100 Msa0192300:three_prime_UTR
ATAATTTAATTATCAAGTTA+TGG 0.389735 2_1:-8049468 Msa0192300:three_prime_UTR
TGCGAGATGGACGGGCTTTG+TGG 0.391277 2_1:+8049607 None:intergenic
GAGGAAGCTTGGTGGCCTTA+GGG 0.392690 2_1:-8049829 Msa0192300:CDS
AATGATGAGGTTCTTATCTC+TGG 0.417708 2_1:-8049107 Msa0192300:three_prime_UTR
AATGACCTCAAAATACTTGA+AGG 0.426532 2_1:+8049773 None:intergenic
AGCTCGCCGTTTGGGTTACA+AGG 0.427870 2_1:-8050246 Msa0192300:CDS
TCTGTTGCCGAGGAGCGTGC+TGG 0.428375 2_1:-8049852 Msa0192300:CDS
CCCAAACGGCGAGCTTTGTC+AGG 0.428600 2_1:+8050254 None:intergenic
GTTTGCCCTGCGAGATGGAC+GGG 0.443094 2_1:+8049599 None:intergenic
TCGGTTTGTCTCACGCTGGC+AGG 0.454772 2_1:+8050510 None:intergenic
AGTGCATTAGATCTAGACTT+TGG 0.460728 2_1:-8049491 Msa0192300:three_prime_UTR
TTTGTCAGGACGAGTGGGTC+TGG 0.461552 2_1:+8050268 None:intergenic
CAGTAACACCTGCTCTCATT+TGG 0.466095 2_1:-8049226 Msa0192300:three_prime_UTR
TATACAATACCCTTGGAAAC+CGG 0.467374 2_1:+8049930 None:intergenic
CTGTTGCCGAGGAGCGTGCT+GGG 0.471029 2_1:-8049851 Msa0192300:CDS
GAGCGTGCTGGGAGGAAGCT+TGG 0.477629 2_1:-8049840 Msa0192300:CDS
CCAATCCTGTCCACAAGCAT+AGG 0.488032 2_1:-8049695 Msa0192300:CDS
TTCCAGTTTGCCCTGCGAGA+TGG 0.489110 2_1:+8049594 None:intergenic
TTACTCAACTTAAGTTTCAA+AGG 0.490055 2_1:-8049884 Msa0192300:CDS
TACGTAGAGGTGGGAGAAAG+AGG 0.490900 2_1:-8049953 Msa0192300:CDS
ACAAAGCCCGTCCATCTCGC+AGG 0.495488 2_1:-8049605 Msa0192300:CDS
CTTCGTGGTCTCACTTCTGC+TGG 0.495517 2_1:-8049669 Msa0192300:CDS
TTGAGTAACTCCCTGGTTAG+TGG 0.499501 2_1:+8049899 None:intergenic
TCATGCAGCGTGTGAGGTGT+TGG 0.501162 2_1:-8050325 Msa0192300:CDS
CATGCAGCGTGTGAGGTGTT+GGG 0.510206 2_1:-8050324 Msa0192300:CDS
AGTTTGCCCTGCGAGATGGA+CGG 0.510514 2_1:+8049598 None:intergenic
GAGAAAGAGGCCGGTTTCCA+AGG 0.516642 2_1:-8049940 Msa0192300:CDS
TGAGTAACTCCCTGGTTAGT+GGG 0.518159 2_1:+8049900 None:intergenic
GTGAGACAAACCGAGAAAAT+GGG 0.520353 2_1:-8050501 Msa0192300:intron
CCTATGCTTGTGGACAGGAT+TGG 0.520921 2_1:+8049695 None:intergenic
CAATAATTCCAAACTATGCT+AGG 0.528127 2_1:+8048925 None:intergenic
CACGAAGTTCCCTATGCTTG+TGG 0.529755 2_1:+8049685 None:intergenic
GAAATGATCCAAGAATCAAC+TGG 0.530060 2_1:-8049722 Msa0192300:CDS
AACAGAGGTTTGAGTGGCAA+AGG 0.530737 2_1:-8049639 Msa0192300:CDS
TTTCCAAGGGTATTGTATAC+GGG 0.532253 2_1:-8049926 Msa0192300:CDS
TTTGGGTTACAAGGCCAAGC+AGG 0.540516 2_1:-8050237 Msa0192300:intron
AGTTCCCTATGCTTGTGGAC+AGG 0.542094 2_1:+8049690 None:intergenic
CGTGCTGGGAGGAAGCTTGG+TGG 0.543008 2_1:-8049837 Msa0192300:CDS
ATACGGGAAGCCCACTAACC+AGG 0.546286 2_1:-8049910 Msa0192300:CDS
GCGAGCTTTGTCAGGACGAG+TGG 0.547527 2_1:+8050262 None:intergenic
GATTACTATAATGAAGCCAA+TGG 0.547885 2_1:-8048966 Msa0192300:three_prime_UTR
TAGGGTTCTCAATTCCTACT+GGG 0.548434 2_1:-8049811 Msa0192300:CDS
CTTCCTCCCAGCACGCTCCT+CGG 0.550992 2_1:+8049845 None:intergenic
CACCTCTACGTACCCTCACT+CGG 0.553002 2_1:+8049964 None:intergenic
TTGTTATTAGTAGAGGTGGA+TGG 0.554620 2_1:-8049028 Msa0192300:three_prime_UTR
AAGAATAGATGATACCTGCT+TGG 0.559188 2_1:+8050223 None:intergenic
CAATCCTGTCCACAAGCATA+GGG 0.561253 2_1:-8049694 Msa0192300:CDS
ACTTAAGTTGAGTAACTCCC+TGG 0.562594 2_1:+8049892 None:intergenic
CTTCCCGTATACAATACCCT+TGG 0.574843 2_1:+8049923 None:intergenic
TTCTAGGCAAAGACACAGAT+CGG 0.576700 2_1:+8049440 None:intergenic
CAATTCCTACTGGGTCAATG+AGG 0.583661 2_1:-8049802 Msa0192300:CDS
AGAAAGAGGCCGGTTTCCAA+GGG 0.585417 2_1:-8049939 Msa0192300:CDS
TTTGACAGCCAAATGAGAGC+AGG 0.586910 2_1:+8049218 None:intergenic
CGAGTGAGGGTACGTAGAGG+TGG 0.590318 2_1:-8049963 Msa0192300:CDS
ACAGAGGTTTGAGTGGCAAA+GGG 0.593708 2_1:-8049638 Msa0192300:CDS
GCTTGGCCTTGTAACCCAAA+CGG 0.594502 2_1:+8050240 None:intergenic
TAGAGGTGGGAGAAAGAGGC+CGG 0.597426 2_1:-8049949 Msa0192300:CDS
CAAAGCCCGTCCATCTCGCA+GGG 0.599732 2_1:-8049604 Msa0192300:CDS
CACAAGCATAGGGAACTTCG+TGG 0.602517 2_1:-8049684 Msa0192300:CDS
GAGTAAGAGATCTGTTGCCG+AGG 0.608981 2_1:-8049862 Msa0192300:CDS
TACGGGAAGCCCACTAACCA+GGG 0.619308 2_1:-8049909 Msa0192300:CDS
GTTATGTTGTGTACCGAGTG+AGG 0.619671 2_1:-8049977 Msa0192300:CDS
AGAATCCTCATTGACCCAGT+AGG 0.619890 2_1:+8049797 None:intergenic
AAAGAACAAATGATCAAACA+AGG 0.621326 2_1:+8049374 None:intergenic
AAAACGGTAAACTATGCTCA+AGG 0.622386 2_1:-8049140 Msa0192300:three_prime_UTR
CGAGCTTTGTCAGGACGAGT+GGG 0.623786 2_1:+8050263 None:intergenic
TACTATAATGAAGCCAATGG+TGG 0.624740 2_1:-8048963 Msa0192300:three_prime_UTR
GGGTCTGGTGAGACGAACAA+TGG 0.629081 2_1:+8050283 None:intergenic
AGGCACATTGATGAATGATG+AGG 0.635465 2_1:-8049120 Msa0192300:three_prime_UTR
TGAGATTCATGCAGCGTGTG+AGG 0.638236 2_1:-8050331 Msa0192300:CDS
AAAGAAAACAGAGGTTTGAG+TGG 0.638472 2_1:-8049645 Msa0192300:CDS
AGTATGTTTCTGAGTTATGG+CGG 0.642445 2_1:-8050373 Msa0192300:CDS
AGTAGGAATTGAGAACCCTA+AGG 0.644888 2_1:+8049814 None:intergenic
TTATGTTGTGTACCGAGTGA+GGG 0.645103 2_1:-8049976 Msa0192300:CDS
TTTCTCGGTTTGTCTCACGC+TGG 0.649311 2_1:+8050506 None:intergenic
GTCATGTAGCTATCAAGTGA+TGG 0.658852 2_1:-8049178 Msa0192300:three_prime_UTR
TTGCCGAGGAGCGTGCTGGG+AGG 0.662735 2_1:-8049848 Msa0192300:CDS
AAGAACAAATGATCAAACAA+GGG 0.666938 2_1:+8049375 None:intergenic
GTTATGGCGGAAGAAGCAAT+CGG 0.676275 2_1:-8050360 Msa0192300:CDS
TCTGCTGGTAAAGAAAACAG+AGG 0.678817 2_1:-8049654 Msa0192300:CDS
GAGTGAGGGTACGTAGAGGT+GGG 0.682033 2_1:-8049962 Msa0192300:CDS
AGTAAAATCAACGATAACGA+CGG 0.699472 2_1:+8049550 None:intergenic
TACCGAGTGAGGGTACGTAG+AGG 0.717794 2_1:-8049966 Msa0192300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTTAATTATCAAGTTA+TGG - chr2_1:8049917-8049936 Msa0192300:CDS 10.0%
!! ATAATTTAATTATCAAGTTA+TGG - chr2_1:8049917-8049936 Msa0192300:CDS 10.0%
!!! TTTATTTTTGTTATTAGTAG+AGG - chr2_1:8050350-8050369 Msa0192300:CDS 15.0%
!!! TTTATTTTTGTTATTAGTAG+AGG - chr2_1:8050350-8050369 Msa0192300:CDS 15.0%
!!! GTTATTTGTGAATTTTGAAT+AGG - chr2_1:8048981-8049000 Msa0192300:three_prime_UTR 20.0%
!! AAACAAGCTTATTATTGATA+AGG + chr2_1:8049205-8049224 None:intergenic 20.0%
!! CATCAATATAAGTTCTATTA+AGG + chr2_1:8049340-8049359 None:intergenic 20.0%
!!! ATTTGAACTTCATTGATTTT+AGG - chr2_1:8049385-8049404 Msa0192300:three_prime_UTR 20.0%
!!! TTTGAACTTCATTGATTTTA+GGG - chr2_1:8049386-8049405 Msa0192300:three_prime_UTR 20.0%
!!! GTTATTTGTGAATTTTGAAT+AGG - chr2_1:8048981-8049000 Msa0192300:three_prime_UTR 20.0%
!! AAACAAGCTTATTATTGATA+AGG + chr2_1:8049205-8049224 None:intergenic 20.0%
!! CATCAATATAAGTTCTATTA+AGG + chr2_1:8049340-8049359 None:intergenic 20.0%
!!! ATTTGAACTTCATTGATTTT+AGG - chr2_1:8049385-8049404 Msa0192300:three_prime_UTR 20.0%
!!! TTTGAACTTCATTGATTTTA+GGG - chr2_1:8049386-8049405 Msa0192300:three_prime_UTR 20.0%
! AGAAAGAATTAAAGCATGTT+TGG + chr2_1:8049270-8049289 None:intergenic 25.0%
! TTACTCAACTTAAGTTTCAA+AGG - chr2_1:8049501-8049520 Msa0192300:three_prime_UTR 25.0%
! AACAACAAAAATGAGTTTCT+AGG + chr2_1:8049964-8049983 None:intergenic 25.0%
! AAGAACAAATGATCAAACAA+GGG + chr2_1:8050013-8050032 None:intergenic 25.0%
! AAAGAACAAATGATCAAACA+AGG + chr2_1:8050014-8050033 None:intergenic 25.0%
!!! CTATGTTTTGCTTTGTTTTT+TGG - chr2_1:8050070-8050089 Msa0192300:intron 25.0%
!!! ATTTTTGTTATTAGTAGAGG+TGG - chr2_1:8050353-8050372 Msa0192300:CDS 25.0%
! GATAGTTTGAGAATTCTTTA+GGG - chr2_1:8050379-8050398 Msa0192300:CDS 25.0%
! AGAAAGAATTAAAGCATGTT+TGG + chr2_1:8049270-8049289 None:intergenic 25.0%
! TTACTCAACTTAAGTTTCAA+AGG - chr2_1:8049501-8049520 Msa0192300:three_prime_UTR 25.0%
! AACAACAAAAATGAGTTTCT+AGG + chr2_1:8049964-8049983 None:intergenic 25.0%
! AAGAACAAATGATCAAACAA+GGG + chr2_1:8050013-8050032 None:intergenic 25.0%
! AAAGAACAAATGATCAAACA+AGG + chr2_1:8050014-8050033 None:intergenic 25.0%
!!! CTATGTTTTGCTTTGTTTTT+TGG - chr2_1:8050070-8050089 Msa0192300:intron 25.0%
!!! ATTTTTGTTATTAGTAGAGG+TGG - chr2_1:8050353-8050372 Msa0192300:CDS 25.0%
! GATAGTTTGAGAATTCTTTA+GGG - chr2_1:8050379-8050398 Msa0192300:CDS 25.0%
! ACAAGTATGTTTCTGAGTTA+TGG - chr2_1:8049009-8049028 Msa0192300:three_prime_UTR 30.0%
GAATTAAAGCATGTTTGGAT+TGG + chr2_1:8049265-8049284 None:intergenic 30.0%
! TTCTACCTTCAAGTATTTTG+AGG - chr2_1:8049607-8049626 Msa0192300:CDS 30.0%
AATGACCTCAAAATACTTGA+AGG + chr2_1:8049615-8049634 None:intergenic 30.0%
!!! CAAGTATTTTGAGGTCATTT+TGG - chr2_1:8049616-8049635 Msa0192300:CDS 30.0%
AGTAAAATCAACGATAACGA+CGG + chr2_1:8049838-8049857 None:intergenic 30.0%
!!! CTTTGTTTTTTGGATTGACA+CGG - chr2_1:8050080-8050099 Msa0192300:intron 30.0%
! GTTCTTTTGTAGCTTCAAAA+CGG - chr2_1:8050229-8050248 Msa0192300:intron 30.0%
GGATAGTTTGAGAATTCTTT+AGG - chr2_1:8050378-8050397 Msa0192300:CDS 30.0%
GATTACTATAATGAAGCCAA+TGG - chr2_1:8050419-8050438 Msa0192300:intron 30.0%
AAAAATTGCCTAGCATAGTT+TGG - chr2_1:8050452-8050471 Msa0192300:intron 30.0%
CAATAATTCCAAACTATGCT+AGG + chr2_1:8050463-8050482 None:intergenic 30.0%
! ACAAGTATGTTTCTGAGTTA+TGG - chr2_1:8049009-8049028 Msa0192300:three_prime_UTR 30.0%
GAATTAAAGCATGTTTGGAT+TGG + chr2_1:8049265-8049284 None:intergenic 30.0%
! TTCTACCTTCAAGTATTTTG+AGG - chr2_1:8049607-8049626 Msa0192300:CDS 30.0%
AATGACCTCAAAATACTTGA+AGG + chr2_1:8049615-8049634 None:intergenic 30.0%
!!! CAAGTATTTTGAGGTCATTT+TGG - chr2_1:8049616-8049635 Msa0192300:CDS 30.0%
AGTAAAATCAACGATAACGA+CGG + chr2_1:8049838-8049857 None:intergenic 30.0%
!!! CTTTGTTTTTTGGATTGACA+CGG - chr2_1:8050080-8050099 Msa0192300:intron 30.0%
! GTTCTTTTGTAGCTTCAAAA+CGG - chr2_1:8050229-8050248 Msa0192300:intron 30.0%
GGATAGTTTGAGAATTCTTT+AGG - chr2_1:8050378-8050397 Msa0192300:CDS 30.0%
GATTACTATAATGAAGCCAA+TGG - chr2_1:8050419-8050438 Msa0192300:intron 30.0%
AAAAATTGCCTAGCATAGTT+TGG - chr2_1:8050452-8050471 Msa0192300:intron 30.0%
CAATAATTCCAAACTATGCT+AGG + chr2_1:8050463-8050482 None:intergenic 30.0%
!! CTGTTTCTATTCATTCTCTC+TGG - chr2_1:8048930-8048949 Msa0192300:three_prime_UTR 35.0%
! AGTATGTTTCTGAGTTATGG+CGG - chr2_1:8049012-8049031 Msa0192300:three_prime_UTR 35.0%
AAGAATAGATGATACCTGCT+TGG + chr2_1:8049165-8049184 None:intergenic 35.0%
TATACAATACCCTTGGAAAC+CGG + chr2_1:8049458-8049477 None:intergenic 35.0%
!! GTTTCCAAGGGTATTGTATA+CGG - chr2_1:8049458-8049477 Msa0192300:three_prime_UTR 35.0%
!! TTTCCAAGGGTATTGTATAC+GGG - chr2_1:8049459-8049478 Msa0192300:three_prime_UTR 35.0%
GAAATGATCCAAGAATCAAC+TGG - chr2_1:8049663-8049682 Msa0192300:CDS 35.0%
AAAGAAAACAGAGGTTTGAG+TGG - chr2_1:8049740-8049759 Msa0192300:CDS 35.0%
! TATTGTCTTGCTTCGTTTTC+TGG - chr2_1:8049865-8049884 Msa0192300:CDS 35.0%
AGTGCATTAGATCTAGACTT+TGG - chr2_1:8049894-8049913 Msa0192300:CDS 35.0%
CTTGAAAACCCAAAAACAGT+GGG + chr2_1:8050111-8050130 None:intergenic 35.0%
ACTTGAAAACCCAAAAACAG+TGG + chr2_1:8050112-8050131 None:intergenic 35.0%
AAAACGGTAAACTATGCTCA+AGG - chr2_1:8050245-8050264 Msa0192300:CDS 35.0%
AATGATGAGGTTCTTATCTC+TGG - chr2_1:8050278-8050297 Msa0192300:CDS 35.0%
! TTGTTATTAGTAGAGGTGGA+TGG - chr2_1:8050357-8050376 Msa0192300:CDS 35.0%
TACTATAATGAAGCCAATGG+TGG - chr2_1:8050422-8050441 Msa0192300:intron 35.0%
! ATTTTTGCATTAGCCACCAT+TGG + chr2_1:8050438-8050457 None:intergenic 35.0%
!! CTGTTTCTATTCATTCTCTC+TGG - chr2_1:8048930-8048949 Msa0192300:three_prime_UTR 35.0%
! AGTATGTTTCTGAGTTATGG+CGG - chr2_1:8049012-8049031 Msa0192300:three_prime_UTR 35.0%
AAGAATAGATGATACCTGCT+TGG + chr2_1:8049165-8049184 None:intergenic 35.0%
TATACAATACCCTTGGAAAC+CGG + chr2_1:8049458-8049477 None:intergenic 35.0%
!! GTTTCCAAGGGTATTGTATA+CGG - chr2_1:8049458-8049477 Msa0192300:three_prime_UTR 35.0%
!! TTTCCAAGGGTATTGTATAC+GGG - chr2_1:8049459-8049478 Msa0192300:three_prime_UTR 35.0%
GAAATGATCCAAGAATCAAC+TGG - chr2_1:8049663-8049682 Msa0192300:CDS 35.0%
AAAGAAAACAGAGGTTTGAG+TGG - chr2_1:8049740-8049759 Msa0192300:CDS 35.0%
! TATTGTCTTGCTTCGTTTTC+TGG - chr2_1:8049865-8049884 Msa0192300:CDS 35.0%
AGTGCATTAGATCTAGACTT+TGG - chr2_1:8049894-8049913 Msa0192300:CDS 35.0%
CTTGAAAACCCAAAAACAGT+GGG + chr2_1:8050111-8050130 None:intergenic 35.0%
ACTTGAAAACCCAAAAACAG+TGG + chr2_1:8050112-8050131 None:intergenic 35.0%
AAAACGGTAAACTATGCTCA+AGG - chr2_1:8050245-8050264 Msa0192300:CDS 35.0%
AATGATGAGGTTCTTATCTC+TGG - chr2_1:8050278-8050297 Msa0192300:CDS 35.0%
! TTGTTATTAGTAGAGGTGGA+TGG - chr2_1:8050357-8050376 Msa0192300:CDS 35.0%
TACTATAATGAAGCCAATGG+TGG - chr2_1:8050422-8050441 Msa0192300:intron 35.0%
! ATTTTTGCATTAGCCACCAT+TGG + chr2_1:8050438-8050457 None:intergenic 35.0%
GTGAGACAAACCGAGAAAAT+GGG - chr2_1:8048884-8048903 Msa0192300:three_prime_UTR 40.0%
! TGGATGCATACCCATTTTCT+CGG + chr2_1:8048897-8048916 None:intergenic 40.0%
TTATGTTGTGTACCGAGTGA+GGG - chr2_1:8049409-8049428 Msa0192300:three_prime_UTR 40.0%
!! ACTTAAGTTGAGTAACTCCC+TGG + chr2_1:8049496-8049515 None:intergenic 40.0%
AGTAGGAATTGAGAACCCTA+AGG + chr2_1:8049574-8049593 None:intergenic 40.0%
TTAGGGTTCTCAATTCCTAC+TGG - chr2_1:8049573-8049592 Msa0192300:CDS 40.0%
TAGGGTTCTCAATTCCTACT+GGG - chr2_1:8049574-8049593 Msa0192300:CDS 40.0%
! TTGGTAAGCCAGTTGATTCT+TGG + chr2_1:8049674-8049693 None:intergenic 40.0%
TCTGCTGGTAAAGAAAACAG+AGG - chr2_1:8049731-8049750 Msa0192300:CDS 40.0%
TTCTAGGCAAAGACACAGAT+CGG + chr2_1:8049948-8049967 None:intergenic 40.0%
GTCATGTAGCTATCAAGTGA+TGG - chr2_1:8050207-8050226 Msa0192300:intron 40.0%
AGGCACATTGATGAATGATG+AGG - chr2_1:8050265-8050284 Msa0192300:CDS 40.0%
GTGAGACAAACCGAGAAAAT+GGG - chr2_1:8048884-8048903 Msa0192300:three_prime_UTR 40.0%
! TGGATGCATACCCATTTTCT+CGG + chr2_1:8048897-8048916 None:intergenic 40.0%
TTATGTTGTGTACCGAGTGA+GGG - chr2_1:8049409-8049428 Msa0192300:three_prime_UTR 40.0%
!! ACTTAAGTTGAGTAACTCCC+TGG + chr2_1:8049496-8049515 None:intergenic 40.0%
AGTAGGAATTGAGAACCCTA+AGG + chr2_1:8049574-8049593 None:intergenic 40.0%
TTAGGGTTCTCAATTCCTAC+TGG - chr2_1:8049573-8049592 Msa0192300:CDS 40.0%
TAGGGTTCTCAATTCCTACT+GGG - chr2_1:8049574-8049593 Msa0192300:CDS 40.0%
! TTGGTAAGCCAGTTGATTCT+TGG + chr2_1:8049674-8049693 None:intergenic 40.0%
TCTGCTGGTAAAGAAAACAG+AGG - chr2_1:8049731-8049750 Msa0192300:CDS 40.0%
TTCTAGGCAAAGACACAGAT+CGG + chr2_1:8049948-8049967 None:intergenic 40.0%
GTCATGTAGCTATCAAGTGA+TGG - chr2_1:8050207-8050226 Msa0192300:intron 40.0%
AGGCACATTGATGAATGATG+AGG - chr2_1:8050265-8050284 Msa0192300:CDS 40.0%
CGTGAGACAAACCGAGAAAA+TGG - chr2_1:8048883-8048902 Msa0192300:three_prime_UTR 45.0%
GAAACAGCAGCTGCAATAGA+TGG + chr2_1:8048917-8048936 None:intergenic 45.0%
! GTTATGGCGGAAGAAGCAAT+CGG - chr2_1:8049025-8049044 Msa0192300:three_prime_UTR 45.0%
GTTATGTTGTGTACCGAGTG+AGG - chr2_1:8049408-8049427 Msa0192300:three_prime_UTR 45.0%
CTTCCCGTATACAATACCCT+TGG + chr2_1:8049465-8049484 None:intergenic 45.0%
TGAGTAACTCCCTGGTTAGT+GGG + chr2_1:8049488-8049507 None:intergenic 45.0%
TTGAGTAACTCCCTGGTTAG+TGG + chr2_1:8049489-8049508 None:intergenic 45.0%
CAATTCCTACTGGGTCAATG+AGG - chr2_1:8049583-8049602 Msa0192300:CDS 45.0%
AGAATCCTCATTGACCCAGT+AGG + chr2_1:8049591-8049610 None:intergenic 45.0%
CAATCCTGTCCACAAGCATA+GGG - chr2_1:8049691-8049710 Msa0192300:CDS 45.0%
AACAGAGGTTTGAGTGGCAA+AGG - chr2_1:8049746-8049765 Msa0192300:CDS 45.0%
ACAGAGGTTTGAGTGGCAAA+GGG - chr2_1:8049747-8049766 Msa0192300:CDS 45.0%
! ACGGTATCACCCACTGTTTT+TGG - chr2_1:8050099-8050118 Msa0192300:intron 45.0%
!! CGGTATCACCCACTGTTTTT+GGG - chr2_1:8050100-8050119 Msa0192300:intron 45.0%
CAGTAACACCTGCTCTCATT+TGG - chr2_1:8050159-8050178 Msa0192300:intron 45.0%
TTTGACAGCCAAATGAGAGC+AGG + chr2_1:8050170-8050189 None:intergenic 45.0%
AGGTTCTTATCTCTGGTGTC+TGG - chr2_1:8050285-8050304 Msa0192300:CDS 45.0%
CGTGAGACAAACCGAGAAAA+TGG - chr2_1:8048883-8048902 Msa0192300:three_prime_UTR 45.0%
GAAACAGCAGCTGCAATAGA+TGG + chr2_1:8048917-8048936 None:intergenic 45.0%
! GTTATGGCGGAAGAAGCAAT+CGG - chr2_1:8049025-8049044 Msa0192300:three_prime_UTR 45.0%
GTTATGTTGTGTACCGAGTG+AGG - chr2_1:8049408-8049427 Msa0192300:three_prime_UTR 45.0%
CTTCCCGTATACAATACCCT+TGG + chr2_1:8049465-8049484 None:intergenic 45.0%
TGAGTAACTCCCTGGTTAGT+GGG + chr2_1:8049488-8049507 None:intergenic 45.0%
TTGAGTAACTCCCTGGTTAG+TGG + chr2_1:8049489-8049508 None:intergenic 45.0%
CAATTCCTACTGGGTCAATG+AGG - chr2_1:8049583-8049602 Msa0192300:CDS 45.0%
AGAATCCTCATTGACCCAGT+AGG + chr2_1:8049591-8049610 None:intergenic 45.0%
CAATCCTGTCCACAAGCATA+GGG - chr2_1:8049691-8049710 Msa0192300:CDS 45.0%
AACAGAGGTTTGAGTGGCAA+AGG - chr2_1:8049746-8049765 Msa0192300:CDS 45.0%
ACAGAGGTTTGAGTGGCAAA+GGG - chr2_1:8049747-8049766 Msa0192300:CDS 45.0%
! ACGGTATCACCCACTGTTTT+TGG - chr2_1:8050099-8050118 Msa0192300:intron 45.0%
!! CGGTATCACCCACTGTTTTT+GGG - chr2_1:8050100-8050119 Msa0192300:intron 45.0%
CAGTAACACCTGCTCTCATT+TGG - chr2_1:8050159-8050178 Msa0192300:intron 45.0%
TTTGACAGCCAAATGAGAGC+AGG + chr2_1:8050170-8050189 None:intergenic 45.0%
AGGTTCTTATCTCTGGTGTC+TGG - chr2_1:8050285-8050304 Msa0192300:CDS 45.0%
! TTTCTCGGTTTGTCTCACGC+TGG + chr2_1:8048882-8048901 None:intergenic 50.0%
TGAGATTCATGCAGCGTGTG+AGG - chr2_1:8049054-8049073 Msa0192300:three_prime_UTR 50.0%
!! GCTTGGCCTTGTAACCCAAA+CGG + chr2_1:8049148-8049167 None:intergenic 50.0%
! TTTGGGTTACAAGGCCAAGC+AGG - chr2_1:8049148-8049167 Msa0192300:three_prime_UTR 50.0%
TACGTAGAGGTGGGAGAAAG+AGG - chr2_1:8049432-8049451 Msa0192300:three_prime_UTR 50.0%
! AGAAAGAGGCCGGTTTCCAA+GGG - chr2_1:8049446-8049465 Msa0192300:three_prime_UTR 50.0%
GAGTAAGAGATCTGTTGCCG+AGG - chr2_1:8049523-8049542 Msa0192300:three_prime_UTR 50.0%
CCTATGCTTGTGGACAGGAT+TGG + chr2_1:8049693-8049712 None:intergenic 50.0%
CCAATCCTGTCCACAAGCAT+AGG - chr2_1:8049690-8049709 Msa0192300:CDS 50.0%
AGTTCCCTATGCTTGTGGAC+AGG + chr2_1:8049698-8049717 None:intergenic 50.0%
CACGAAGTTCCCTATGCTTG+TGG + chr2_1:8049703-8049722 None:intergenic 50.0%
CACAAGCATAGGGAACTTCG+TGG - chr2_1:8049701-8049720 Msa0192300:CDS 50.0%
! TTTCTCGGTTTGTCTCACGC+TGG + chr2_1:8048882-8048901 None:intergenic 50.0%
TGAGATTCATGCAGCGTGTG+AGG - chr2_1:8049054-8049073 Msa0192300:three_prime_UTR 50.0%
!! GCTTGGCCTTGTAACCCAAA+CGG + chr2_1:8049148-8049167 None:intergenic 50.0%
! TTTGGGTTACAAGGCCAAGC+AGG - chr2_1:8049148-8049167 Msa0192300:three_prime_UTR 50.0%
TACGTAGAGGTGGGAGAAAG+AGG - chr2_1:8049432-8049451 Msa0192300:three_prime_UTR 50.0%
! AGAAAGAGGCCGGTTTCCAA+GGG - chr2_1:8049446-8049465 Msa0192300:three_prime_UTR 50.0%
GAGTAAGAGATCTGTTGCCG+AGG - chr2_1:8049523-8049542 Msa0192300:three_prime_UTR 50.0%
CCTATGCTTGTGGACAGGAT+TGG + chr2_1:8049693-8049712 None:intergenic 50.0%
CCAATCCTGTCCACAAGCAT+AGG - chr2_1:8049690-8049709 Msa0192300:CDS 50.0%
AGTTCCCTATGCTTGTGGAC+AGG + chr2_1:8049698-8049717 None:intergenic 50.0%
CACGAAGTTCCCTATGCTTG+TGG + chr2_1:8049703-8049722 None:intergenic 50.0%
CACAAGCATAGGGAACTTCG+TGG - chr2_1:8049701-8049720 Msa0192300:CDS 50.0%
TCATGCAGCGTGTGAGGTGT+TGG - chr2_1:8049060-8049079 Msa0192300:three_prime_UTR 55.0%
! CATGCAGCGTGTGAGGTGTT+GGG - chr2_1:8049061-8049080 Msa0192300:three_prime_UTR 55.0%
GGGTCTGGTGAGACGAACAA+TGG + chr2_1:8049105-8049124 None:intergenic 55.0%
TTTGTCAGGACGAGTGGGTC+TGG + chr2_1:8049120-8049139 None:intergenic 55.0%
! CGAGCTTTGTCAGGACGAGT+GGG + chr2_1:8049125-8049144 None:intergenic 55.0%
TCCTGACAAAGCTCGCCGTT+TGG - chr2_1:8049130-8049149 Msa0192300:three_prime_UTR 55.0%
CCTGACAAAGCTCGCCGTTT+GGG - chr2_1:8049131-8049150 Msa0192300:three_prime_UTR 55.0%
! AGCTCGCCGTTTGGGTTACA+AGG - chr2_1:8049139-8049158 Msa0192300:three_prime_UTR 55.0%
! TACCGAGTGAGGGTACGTAG+AGG - chr2_1:8049419-8049438 Msa0192300:three_prime_UTR 55.0%
CACCTCTACGTACCCTCACT+CGG + chr2_1:8049424-8049443 None:intergenic 55.0%
! GAGTGAGGGTACGTAGAGGT+GGG - chr2_1:8049423-8049442 Msa0192300:three_prime_UTR 55.0%
TAGAGGTGGGAGAAAGAGGC+CGG - chr2_1:8049436-8049455 Msa0192300:three_prime_UTR 55.0%
! GAGAAAGAGGCCGGTTTCCA+AGG - chr2_1:8049445-8049464 Msa0192300:three_prime_UTR 55.0%
ATACGGGAAGCCCACTAACC+AGG - chr2_1:8049475-8049494 Msa0192300:three_prime_UTR 55.0%
TACGGGAAGCCCACTAACCA+GGG - chr2_1:8049476-8049495 Msa0192300:three_prime_UTR 55.0%
! GAGGAAGCTTGGTGGCCTTA+GGG - chr2_1:8049556-8049575 Msa0192300:exon 55.0%
CTTCGTGGTCTCACTTCTGC+TGG - chr2_1:8049716-8049735 Msa0192300:CDS 55.0%
AGTTTGCCCTGCGAGATGGA+CGG + chr2_1:8049790-8049809 None:intergenic 55.0%
TTCCAGTTTGCCCTGCGAGA+TGG + chr2_1:8049794-8049813 None:intergenic 55.0%
TCATGCAGCGTGTGAGGTGT+TGG - chr2_1:8049060-8049079 Msa0192300:three_prime_UTR 55.0%
! CATGCAGCGTGTGAGGTGTT+GGG - chr2_1:8049061-8049080 Msa0192300:three_prime_UTR 55.0%
GGGTCTGGTGAGACGAACAA+TGG + chr2_1:8049105-8049124 None:intergenic 55.0%
TTTGTCAGGACGAGTGGGTC+TGG + chr2_1:8049120-8049139 None:intergenic 55.0%
! CGAGCTTTGTCAGGACGAGT+GGG + chr2_1:8049125-8049144 None:intergenic 55.0%
TCCTGACAAAGCTCGCCGTT+TGG - chr2_1:8049130-8049149 Msa0192300:three_prime_UTR 55.0%
CCTGACAAAGCTCGCCGTTT+GGG - chr2_1:8049131-8049150 Msa0192300:three_prime_UTR 55.0%
! AGCTCGCCGTTTGGGTTACA+AGG - chr2_1:8049139-8049158 Msa0192300:three_prime_UTR 55.0%
! TACCGAGTGAGGGTACGTAG+AGG - chr2_1:8049419-8049438 Msa0192300:three_prime_UTR 55.0%
CACCTCTACGTACCCTCACT+CGG + chr2_1:8049424-8049443 None:intergenic 55.0%
! GAGTGAGGGTACGTAGAGGT+GGG - chr2_1:8049423-8049442 Msa0192300:three_prime_UTR 55.0%
TAGAGGTGGGAGAAAGAGGC+CGG - chr2_1:8049436-8049455 Msa0192300:three_prime_UTR 55.0%
! GAGAAAGAGGCCGGTTTCCA+AGG - chr2_1:8049445-8049464 Msa0192300:three_prime_UTR 55.0%
ATACGGGAAGCCCACTAACC+AGG - chr2_1:8049475-8049494 Msa0192300:three_prime_UTR 55.0%
TACGGGAAGCCCACTAACCA+GGG - chr2_1:8049476-8049495 Msa0192300:three_prime_UTR 55.0%
! GAGGAAGCTTGGTGGCCTTA+GGG - chr2_1:8049556-8049575 Msa0192300:exon 55.0%
CTTCGTGGTCTCACTTCTGC+TGG - chr2_1:8049716-8049735 Msa0192300:CDS 55.0%
AGTTTGCCCTGCGAGATGGA+CGG + chr2_1:8049790-8049809 None:intergenic 55.0%
TTCCAGTTTGCCCTGCGAGA+TGG + chr2_1:8049794-8049813 None:intergenic 55.0%
! TCGGTTTGTCTCACGCTGGC+AGG + chr2_1:8048878-8048897 None:intergenic 60.0%
! GCGAGCTTTGTCAGGACGAG+TGG + chr2_1:8049126-8049145 None:intergenic 60.0%
! CCCAAACGGCGAGCTTTGTC+AGG + chr2_1:8049134-8049153 None:intergenic 60.0%
! CGAGTGAGGGTACGTAGAGG+TGG - chr2_1:8049422-8049441 Msa0192300:three_prime_UTR 60.0%
! GGAGGAAGCTTGGTGGCCTT+AGG - chr2_1:8049555-8049574 Msa0192300:exon 60.0%
! TGCGAGATGGACGGGCTTTG+TGG + chr2_1:8049781-8049800 None:intergenic 60.0%
ACAAAGCCCGTCCATCTCGC+AGG - chr2_1:8049780-8049799 Msa0192300:CDS 60.0%
CAAAGCCCGTCCATCTCGCA+GGG - chr2_1:8049781-8049800 Msa0192300:CDS 60.0%
GTTTGCCCTGCGAGATGGAC+GGG + chr2_1:8049789-8049808 None:intergenic 60.0%
GTCCATCTCGCAGGGCAAAC+TGG - chr2_1:8049789-8049808 Msa0192300:CDS 60.0%
! TCGGTTTGTCTCACGCTGGC+AGG + chr2_1:8048878-8048897 None:intergenic 60.0%
! GCGAGCTTTGTCAGGACGAG+TGG + chr2_1:8049126-8049145 None:intergenic 60.0%
! CCCAAACGGCGAGCTTTGTC+AGG + chr2_1:8049134-8049153 None:intergenic 60.0%
! CGAGTGAGGGTACGTAGAGG+TGG - chr2_1:8049422-8049441 Msa0192300:three_prime_UTR 60.0%
! GGAGGAAGCTTGGTGGCCTT+AGG - chr2_1:8049555-8049574 Msa0192300:exon 60.0%
! TGCGAGATGGACGGGCTTTG+TGG + chr2_1:8049781-8049800 None:intergenic 60.0%
ACAAAGCCCGTCCATCTCGC+AGG - chr2_1:8049780-8049799 Msa0192300:CDS 60.0%
CAAAGCCCGTCCATCTCGCA+GGG - chr2_1:8049781-8049800 Msa0192300:CDS 60.0%
GTTTGCCCTGCGAGATGGAC+GGG + chr2_1:8049789-8049808 None:intergenic 60.0%
GTCCATCTCGCAGGGCAAAC+TGG - chr2_1:8049789-8049808 Msa0192300:CDS 60.0%
! TCTGTTGCCGAGGAGCGTGC+TGG - chr2_1:8049533-8049552 Msa0192300:three_prime_UTR 65.0%
! CTGTTGCCGAGGAGCGTGCT+GGG - chr2_1:8049534-8049553 Msa0192300:three_prime_UTR 65.0%
CTTCCTCCCAGCACGCTCCT+CGG + chr2_1:8049543-8049562 None:intergenic 65.0%
GAGCGTGCTGGGAGGAAGCT+TGG - chr2_1:8049545-8049564 Msa0192300:exon 65.0%
CGTGCTGGGAGGAAGCTTGG+TGG - chr2_1:8049548-8049567 Msa0192300:exon 65.0%
! TCTGTTGCCGAGGAGCGTGC+TGG - chr2_1:8049533-8049552 Msa0192300:three_prime_UTR 65.0%
! CTGTTGCCGAGGAGCGTGCT+GGG - chr2_1:8049534-8049553 Msa0192300:three_prime_UTR 65.0%
CTTCCTCCCAGCACGCTCCT+CGG + chr2_1:8049543-8049562 None:intergenic 65.0%
GAGCGTGCTGGGAGGAAGCT+TGG - chr2_1:8049545-8049564 Msa0192300:exon 65.0%
CGTGCTGGGAGGAAGCTTGG+TGG - chr2_1:8049548-8049567 Msa0192300:exon 65.0%
! TTGCCGAGGAGCGTGCTGGG+AGG - chr2_1:8049537-8049556 Msa0192300:three_prime_UTR 70.0%
! TTGCCGAGGAGCGTGCTGGG+AGG - chr2_1:8049537-8049556 Msa0192300:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 8048867 8050540 8048867 ID=Msa0192300;Name=Msa0192300
chr2_1 mRNA 8048867 8050540 8048867 ID=Msa0192300-mRNA-1;Parent=Msa0192300;Name=Msa0192300-mRNA-1;_AED=0.03;_eAED=0.03;_QI=35|1|1|1|1|1|3|690|204
chr2_1 exon 8048867 8050000 8048867 ID=Msa0192300-mRNA-1:exon:3731;Parent=Msa0192300-mRNA-1
chr2_1 exon 8050238 8050404 8050238 ID=Msa0192300-mRNA-1:exon:3730;Parent=Msa0192300-mRNA-1
chr2_1 exon 8050502 8050540 8050502 ID=Msa0192300-mRNA-1:exon:3729;Parent=Msa0192300-mRNA-1
chr2_1 five_prime_UTR 8050506 8050540 8050506 ID=Msa0192300-mRNA-1:five_prime_utr;Parent=Msa0192300-mRNA-1
chr2_1 CDS 8050502 8050505 8050502 ID=Msa0192300-mRNA-1:cds;Parent=Msa0192300-mRNA-1
chr2_1 CDS 8050238 8050404 8050238 ID=Msa0192300-mRNA-1:cds;Parent=Msa0192300-mRNA-1
chr2_1 CDS 8049557 8050000 8049557 ID=Msa0192300-mRNA-1:cds;Parent=Msa0192300-mRNA-1
chr2_1 three_prime_UTR 8048867 8049556 8048867 ID=Msa0192300-mRNA-1:three_prime_utr;Parent=Msa0192300-mRNA-1
Gene Sequence

>Msa0192300

ATGGGTGCATACAAGTATGTTTCTGAGTTATGGCGGAAGAAGCAATCGGATGTGATGAGATTCATGCAGCGTGTGAGGTGTTGGGAGTATCGTCAACAATCTTCCATTGTTCGTCTCACCAGACCCACTCGTCCTGACAAAGCTCGCCGTTTGGGTTACAAGGCCAAGCAGGGTTATGTTGTGTACCGAGTGAGGGTACGTAGAGGTGGGAGAAAGAGGCCGGTTTCCAAGGGTATTGTATACGGGAAGCCCACTAACCAGGGAGTTACTCAACTTAAGTTTCAAAGGAGTAAGAGATCTGTTGCCGAGGAGCGTGCTGGGAGGAAGCTTGGTGGCCTTAGGGTTCTCAATTCCTACTGGGTCAATGAGGATTCTACCTTCAAGTATTTTGAGGTCATTTTGGTTGATGTTGCTCATAGTGCTATAAGAAATGATCCAAGAATCAACTGGCTTACCAATCCTGTCCACAAGCATAGGGAACTTCGTGGTCTCACTTCTGCTGGTAAAGAAAACAGAGGTTTGAGTGGCAAAGGGCATCGTTACCACAAAGCCCGTCCATCTCGCAGGGCAAACTGGAAGAGAAACAACACTCTGTCTCTCCGTCGTTATCGTTGA

Protein sequence

>Msa0192300

MGAYKYVSELWRKKQSDVMRFMQRVRCWEYRQQSSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVSKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTFKYFEVILVDVAHSAIRNDPRINWLTNPVHKHRELRGLTSAGKENRGLSGKGHRYHKARPSRRANWKRNNTLSLRRYR*