AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0301250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0301250 MtrunA17_Chr3g0118291 100.000 204 0 0 1 204 1 204 6.78e-150 414
Msa0301250 MtrunA17_Chr2g0282541 99.510 204 1 0 1 204 49 252 1.89e-149 415
Msa0301250 MtrunA17_Chr7g0224171 90.323 62 6 0 1 62 1 62 1.93e-35 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0301250 AT4G16720.1 88.235 204 24 0 1 204 1 204 9.00e-122 343
Msa0301250 AT4G17390.1 87.745 204 25 0 1 204 1 204 1.88e-121 342

Find 95 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATAGTTTGAGAATTCTTT+AGG 0.240913 2_3:+57111890 Msa0301250:three_prime_UTR
CGTGAGACAAACCGAGAAAA+TGG 0.255682 2_3:+57110399 Msa0301250:exon
GGAGGAAGCTTGGTGGCCTT+AGG 0.282780 2_3:+57111068 Msa0301250:CDS
GTTTCCAAGGGTATTGTATA+CGG 0.297546 2_3:+57110971 Msa0301250:CDS
TTGGTAAGCCAGTTGATTCT+TGG 0.325346 2_3:-57111184 None:intergenic
TCCTGACAAAGCTCGCCGTT+TGG 0.353079 2_3:+57110643 Msa0301250:CDS
GATAGTTTGAGAATTCTTTA+GGG 0.355332 2_3:+57111891 Msa0301250:three_prime_UTR
ACAAGTATGTTTCTGAGTTA+TGG 0.369598 2_3:+57110522 Msa0301250:CDS
TTAGGGTTCTCAATTCCTAC+TGG 0.369741 2_3:+57111086 Msa0301250:CDS
CCTGACAAAGCTCGCCGTTT+GGG 0.382164 2_3:+57110644 Msa0301250:CDS
GTCCATCTCGCAGGGCAAAC+TGG 0.382984 2_3:+57111302 Msa0301250:CDS
AGGTTCTTATCTCTGGTGTC+TGG 0.388442 2_3:+57111797 Msa0301250:three_prime_UTR
ATAATTTAATTATCAAGTTA+TGG 0.389735 2_3:+57111430 Msa0301250:three_prime_UTR
TGCGAGATGGACGGGCTTTG+TGG 0.391277 2_3:-57111291 None:intergenic
GAGGAAGCTTGGTGGCCTTA+GGG 0.392690 2_3:+57111069 Msa0301250:CDS
AATGATGAGGTTCTTATCTC+TGG 0.417708 2_3:+57111790 Msa0301250:three_prime_UTR
AATGACCTCAAAATACTTGA+AGG 0.426532 2_3:-57111125 None:intergenic
AGCTCGCCGTTTGGGTTACA+AGG 0.427870 2_3:+57110652 Msa0301250:CDS
TCTGTTGCCGAGGAGCGTGC+TGG 0.428375 2_3:+57111046 Msa0301250:CDS
CCCAAACGGCGAGCTTTGTC+AGG 0.428600 2_3:-57110644 None:intergenic
GTTTGCCCTGCGAGATGGAC+GGG 0.443094 2_3:-57111299 None:intergenic
TCGGTTTGTCTCACGCTGGC+AGG 0.454772 2_3:-57110391 None:intergenic
AGTGCATTAGATCTAGACTT+TGG 0.460728 2_3:+57111407 Msa0301250:three_prime_UTR
TTTGTCAGGACGAGTGGGTC+TGG 0.461552 2_3:-57110630 None:intergenic
CAGTAACACCTGCTCTCATT+TGG 0.466095 2_3:+57111672 Msa0301250:three_prime_UTR
TATACAATACCCTTGGAAAC+CGG 0.467374 2_3:-57110968 None:intergenic
CTGTTGCCGAGGAGCGTGCT+GGG 0.471029 2_3:+57111047 Msa0301250:CDS
GAGCGTGCTGGGAGGAAGCT+TGG 0.477629 2_3:+57111058 Msa0301250:CDS
CCAATCCTGTCCACAAGCAT+AGG 0.488032 2_3:+57111203 Msa0301250:CDS
TTCCAGTTTGCCCTGCGAGA+TGG 0.489110 2_3:-57111304 None:intergenic
TTACTCAACTTAAGTTTCAA+AGG 0.490055 2_3:+57111014 Msa0301250:CDS
TACGTAGAGGTGGGAGAAAG+AGG 0.490900 2_3:+57110945 Msa0301250:CDS
ACAAAGCCCGTCCATCTCGC+AGG 0.495488 2_3:+57111293 Msa0301250:CDS
CTTCGTGGTCTCACTTCTGC+TGG 0.495517 2_3:+57111229 Msa0301250:CDS
TTGAGTAACTCCCTGGTTAG+TGG 0.499501 2_3:-57110999 None:intergenic
TCATGCAGCGTGTGAGGTGT+TGG 0.501162 2_3:+57110573 Msa0301250:CDS
CATGCAGCGTGTGAGGTGTT+GGG 0.510206 2_3:+57110574 Msa0301250:CDS
AGTTTGCCCTGCGAGATGGA+CGG 0.510514 2_3:-57111300 None:intergenic
GAGAAAGAGGCCGGTTTCCA+AGG 0.516642 2_3:+57110958 Msa0301250:CDS
TGAGTAACTCCCTGGTTAGT+GGG 0.518159 2_3:-57110998 None:intergenic
GTGAGACAAACCGAGAAAAT+GGG 0.520353 2_3:+57110400 Msa0301250:exon
CCTATGCTTGTGGACAGGAT+TGG 0.520921 2_3:-57111203 None:intergenic
CAATAATTCCAAACTATGCT+AGG 0.528127 2_3:-57111972 None:intergenic
CACGAAGTTCCCTATGCTTG+TGG 0.529755 2_3:-57111213 None:intergenic
GAAATGATCCAAGAATCAAC+TGG 0.530060 2_3:+57111176 Msa0301250:CDS
AACAGAGGTTTGAGTGGCAA+AGG 0.530737 2_3:+57111259 Msa0301250:CDS
TTTCCAAGGGTATTGTATAC+GGG 0.532253 2_3:+57110972 Msa0301250:CDS
TTTGGGTTACAAGGCCAAGC+AGG 0.540516 2_3:+57110661 Msa0301250:CDS
AGTTCCCTATGCTTGTGGAC+AGG 0.542094 2_3:-57111208 None:intergenic
CGTGCTGGGAGGAAGCTTGG+TGG 0.543008 2_3:+57111061 Msa0301250:CDS
ATACGGGAAGCCCACTAACC+AGG 0.546286 2_3:+57110988 Msa0301250:CDS
GCGAGCTTTGTCAGGACGAG+TGG 0.547527 2_3:-57110636 None:intergenic
GATTACTATAATGAAGCCAA+TGG 0.547885 2_3:+57111931 Msa0301250:three_prime_UTR
TAGGGTTCTCAATTCCTACT+GGG 0.548434 2_3:+57111087 Msa0301250:CDS
CTTCCTCCCAGCACGCTCCT+CGG 0.550992 2_3:-57111053 None:intergenic
CACCTCTACGTACCCTCACT+CGG 0.553002 2_3:-57110934 None:intergenic
TTGTTATTAGTAGAGGTGGA+TGG 0.554620 2_3:+57111869 Msa0301250:three_prime_UTR
AAGAATAGATGATACCTGCT+TGG 0.559188 2_3:-57110675 None:intergenic
CAATCCTGTCCACAAGCATA+GGG 0.561253 2_3:+57111204 Msa0301250:CDS
ACTTAAGTTGAGTAACTCCC+TGG 0.562594 2_3:-57111006 None:intergenic
CTTCCCGTATACAATACCCT+TGG 0.574843 2_3:-57110975 None:intergenic
TTCTAGGCAAAGACACAGAT+CGG 0.576700 2_3:-57111458 None:intergenic
CAATTCCTACTGGGTCAATG+AGG 0.583661 2_3:+57111096 Msa0301250:CDS
AGAAAGAGGCCGGTTTCCAA+GGG 0.585417 2_3:+57110959 Msa0301250:CDS
TTTGACAGCCAAATGAGAGC+AGG 0.586910 2_3:-57111680 None:intergenic
CGAGTGAGGGTACGTAGAGG+TGG 0.590318 2_3:+57110935 Msa0301250:CDS
ACAGAGGTTTGAGTGGCAAA+GGG 0.593708 2_3:+57111260 Msa0301250:CDS
GCTTGGCCTTGTAACCCAAA+CGG 0.594502 2_3:-57110658 None:intergenic
TAGAGGTGGGAGAAAGAGGC+CGG 0.597426 2_3:+57110949 Msa0301250:CDS
CAAAGCCCGTCCATCTCGCA+GGG 0.599732 2_3:+57111294 Msa0301250:CDS
CACAAGCATAGGGAACTTCG+TGG 0.602517 2_3:+57111214 Msa0301250:CDS
GAGTAAGAGATCTGTTGCCG+AGG 0.608981 2_3:+57111036 Msa0301250:CDS
TACGGGAAGCCCACTAACCA+GGG 0.619308 2_3:+57110989 Msa0301250:CDS
GTTATGTTGTGTACCGAGTG+AGG 0.619671 2_3:+57110921 Msa0301250:CDS
AGAATCCTCATTGACCCAGT+AGG 0.619890 2_3:-57111101 None:intergenic
AAAACGGTAAACTATGCTCA+AGG 0.622386 2_3:+57111757 Msa0301250:three_prime_UTR
CGAGCTTTGTCAGGACGAGT+GGG 0.623786 2_3:-57110635 None:intergenic
TACTATAATGAAGCCAATGG+TGG 0.624740 2_3:+57111934 Msa0301250:three_prime_UTR
GGGTCTGGTGAGACGAACAA+TGG 0.629081 2_3:-57110615 None:intergenic
AGGCACATTGATGAATGATG+AGG 0.635465 2_3:+57111777 Msa0301250:three_prime_UTR
TGAGATTCATGCAGCGTGTG+AGG 0.638236 2_3:+57110567 Msa0301250:CDS
AAAGAAAACAGAGGTTTGAG+TGG 0.638472 2_3:+57111253 Msa0301250:CDS
AGTATGTTTCTGAGTTATGG+CGG 0.642445 2_3:+57110525 Msa0301250:CDS
AGTAGGAATTGAGAACCCTA+AGG 0.644888 2_3:-57111084 None:intergenic
AAAGAACAGATGATCAAACA+AGG 0.644897 2_3:-57111524 None:intergenic
TTATGTTGTGTACCGAGTGA+GGG 0.645103 2_3:+57110922 Msa0301250:CDS
TTTCTCGGTTTGTCTCACGC+TGG 0.649311 2_3:-57110395 None:intergenic
TTGCCGAGGAGCGTGCTGGG+AGG 0.662735 2_3:+57111050 Msa0301250:CDS
GTTATGGCGGAAGAAGCAAT+CGG 0.676275 2_3:+57110538 Msa0301250:CDS
TCTGCTGGTAAAGAAAACAG+AGG 0.678817 2_3:+57111244 Msa0301250:CDS
TGTCATGTAGCTACAAGTGA+TGG 0.680446 2_3:+57111719 Msa0301250:three_prime_UTR
AAGAACAGATGATCAAACAA+GGG 0.681166 2_3:-57111523 None:intergenic
GAGTGAGGGTACGTAGAGGT+GGG 0.682033 2_3:+57110936 Msa0301250:CDS
AGTAAAATCAACGATAACGA+CGG 0.699472 2_3:-57111348 None:intergenic
TACCGAGTGAGGGTACGTAG+AGG 0.717794 2_3:+57110932 Msa0301250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTTAATTATCAAGTTA+TGG + chr2_3:57111430-57111449 Msa0301250:three_prime_UTR 10.0%
!! ATAATTTAATTATCAAGTTA+TGG + chr2_3:57111430-57111449 Msa0301250:three_prime_UTR 10.0%
!!! TTTATTTTTGTTATTAGTAG+AGG + chr2_3:57111862-57111881 Msa0301250:three_prime_UTR 15.0%
!!! TTTATTTTTGTTATTAGTAG+AGG + chr2_3:57111862-57111881 Msa0301250:three_prime_UTR 15.0%
!!! GTTATTTGTGAATTTTGAAT+AGG + chr2_3:57110494-57110513 Msa0301250:intron 20.0%
!! AAACAAGCTTATTATTGATA+AGG - chr2_3:57110718-57110737 None:intergenic 20.0%
!! CATCAATATAAGTTCTATTA+AGG - chr2_3:57110853-57110872 None:intergenic 20.0%
!!! ATTTGAACTTCATTGATTTT+AGG + chr2_3:57110898-57110917 Msa0301250:intron 20.0%
!!! TTTGAACTTCATTGATTTTA+GGG + chr2_3:57110899-57110918 Msa0301250:intron 20.0%
!!! GTTATTTGTGAATTTTGAAT+AGG + chr2_3:57110494-57110513 Msa0301250:intron 20.0%
!! AAACAAGCTTATTATTGATA+AGG - chr2_3:57110718-57110737 None:intergenic 20.0%
!! CATCAATATAAGTTCTATTA+AGG - chr2_3:57110853-57110872 None:intergenic 20.0%
!!! ATTTGAACTTCATTGATTTT+AGG + chr2_3:57110898-57110917 Msa0301250:intron 20.0%
!!! TTTGAACTTCATTGATTTTA+GGG + chr2_3:57110899-57110918 Msa0301250:intron 20.0%
! AGAAAGAATTAAAGCATGTT+TGG - chr2_3:57110783-57110802 None:intergenic 25.0%
! TTACTCAACTTAAGTTTCAA+AGG + chr2_3:57111014-57111033 Msa0301250:CDS 25.0%
! AACAACAAAAATGAGTTTCT+AGG - chr2_3:57111477-57111496 None:intergenic 25.0%
!!! CTATGTTTTGCTTTGTTTTT+TGG + chr2_3:57111583-57111602 Msa0301250:three_prime_UTR 25.0%
!!! ATTTTTGTTATTAGTAGAGG+TGG + chr2_3:57111865-57111884 Msa0301250:three_prime_UTR 25.0%
! GATAGTTTGAGAATTCTTTA+GGG + chr2_3:57111891-57111910 Msa0301250:three_prime_UTR 25.0%
! AGAAAGAATTAAAGCATGTT+TGG - chr2_3:57110783-57110802 None:intergenic 25.0%
! TTACTCAACTTAAGTTTCAA+AGG + chr2_3:57111014-57111033 Msa0301250:CDS 25.0%
! AACAACAAAAATGAGTTTCT+AGG - chr2_3:57111477-57111496 None:intergenic 25.0%
!!! CTATGTTTTGCTTTGTTTTT+TGG + chr2_3:57111583-57111602 Msa0301250:three_prime_UTR 25.0%
!!! ATTTTTGTTATTAGTAGAGG+TGG + chr2_3:57111865-57111884 Msa0301250:three_prime_UTR 25.0%
! GATAGTTTGAGAATTCTTTA+GGG + chr2_3:57111891-57111910 Msa0301250:three_prime_UTR 25.0%
!!! CTGTTTCTATTCATTTTCTC+TGG + chr2_3:57110446-57110465 Msa0301250:intron 30.0%
! ACAAGTATGTTTCTGAGTTA+TGG + chr2_3:57110522-57110541 Msa0301250:CDS 30.0%
GAATTAAAGCATGTTTGGAT+TGG - chr2_3:57110778-57110797 None:intergenic 30.0%
! TTCTACCTTCAAGTATTTTG+AGG + chr2_3:57111120-57111139 Msa0301250:CDS 30.0%
AATGACCTCAAAATACTTGA+AGG - chr2_3:57111128-57111147 None:intergenic 30.0%
!!! CAAGTATTTTGAGGTCATTT+TGG + chr2_3:57111129-57111148 Msa0301250:CDS 30.0%
AGTAAAATCAACGATAACGA+CGG - chr2_3:57111351-57111370 None:intergenic 30.0%
AAGAACAGATGATCAAACAA+GGG - chr2_3:57111526-57111545 None:intergenic 30.0%
AAAGAACAGATGATCAAACA+AGG - chr2_3:57111527-57111546 None:intergenic 30.0%
!!! CTTTGTTTTTTGGATTGACA+CGG + chr2_3:57111593-57111612 Msa0301250:three_prime_UTR 30.0%
! GTTCTTTTGTAGCTTCAAAA+CGG + chr2_3:57111741-57111760 Msa0301250:three_prime_UTR 30.0%
GGATAGTTTGAGAATTCTTT+AGG + chr2_3:57111890-57111909 Msa0301250:three_prime_UTR 30.0%
GATTACTATAATGAAGCCAA+TGG + chr2_3:57111931-57111950 Msa0301250:three_prime_UTR 30.0%
AAAAATTGCCTAGCATAGTT+TGG + chr2_3:57111964-57111983 Msa0301250:three_prime_UTR 30.0%
CAATAATTCCAAACTATGCT+AGG - chr2_3:57111975-57111994 None:intergenic 30.0%
!!! CTGTTTCTATTCATTTTCTC+TGG + chr2_3:57110446-57110465 Msa0301250:intron 30.0%
! ACAAGTATGTTTCTGAGTTA+TGG + chr2_3:57110522-57110541 Msa0301250:CDS 30.0%
GAATTAAAGCATGTTTGGAT+TGG - chr2_3:57110778-57110797 None:intergenic 30.0%
! TTCTACCTTCAAGTATTTTG+AGG + chr2_3:57111120-57111139 Msa0301250:CDS 30.0%
AATGACCTCAAAATACTTGA+AGG - chr2_3:57111128-57111147 None:intergenic 30.0%
!!! CAAGTATTTTGAGGTCATTT+TGG + chr2_3:57111129-57111148 Msa0301250:CDS 30.0%
AGTAAAATCAACGATAACGA+CGG - chr2_3:57111351-57111370 None:intergenic 30.0%
AAGAACAGATGATCAAACAA+GGG - chr2_3:57111526-57111545 None:intergenic 30.0%
AAAGAACAGATGATCAAACA+AGG - chr2_3:57111527-57111546 None:intergenic 30.0%
!!! CTTTGTTTTTTGGATTGACA+CGG + chr2_3:57111593-57111612 Msa0301250:three_prime_UTR 30.0%
! GTTCTTTTGTAGCTTCAAAA+CGG + chr2_3:57111741-57111760 Msa0301250:three_prime_UTR 30.0%
GGATAGTTTGAGAATTCTTT+AGG + chr2_3:57111890-57111909 Msa0301250:three_prime_UTR 30.0%
GATTACTATAATGAAGCCAA+TGG + chr2_3:57111931-57111950 Msa0301250:three_prime_UTR 30.0%
AAAAATTGCCTAGCATAGTT+TGG + chr2_3:57111964-57111983 Msa0301250:three_prime_UTR 30.0%
CAATAATTCCAAACTATGCT+AGG - chr2_3:57111975-57111994 None:intergenic 30.0%
! AGTATGTTTCTGAGTTATGG+CGG + chr2_3:57110525-57110544 Msa0301250:CDS 35.0%
AAGAATAGATGATACCTGCT+TGG - chr2_3:57110678-57110697 None:intergenic 35.0%
TATACAATACCCTTGGAAAC+CGG - chr2_3:57110971-57110990 None:intergenic 35.0%
!! GTTTCCAAGGGTATTGTATA+CGG + chr2_3:57110971-57110990 Msa0301250:CDS 35.0%
!! TTTCCAAGGGTATTGTATAC+GGG + chr2_3:57110972-57110991 Msa0301250:CDS 35.0%
GAAATGATCCAAGAATCAAC+TGG + chr2_3:57111176-57111195 Msa0301250:CDS 35.0%
AAAGAAAACAGAGGTTTGAG+TGG + chr2_3:57111253-57111272 Msa0301250:CDS 35.0%
! TATTGTCTTGCTTCGTTTTC+TGG + chr2_3:57111378-57111397 Msa0301250:three_prime_UTR 35.0%
AGTGCATTAGATCTAGACTT+TGG + chr2_3:57111407-57111426 Msa0301250:three_prime_UTR 35.0%
CTTGAAAACCCAAAAACAGT+GGG - chr2_3:57111624-57111643 None:intergenic 35.0%
ACTTGAAAACCCAAAAACAG+TGG - chr2_3:57111625-57111644 None:intergenic 35.0%
AAAACGGTAAACTATGCTCA+AGG + chr2_3:57111757-57111776 Msa0301250:three_prime_UTR 35.0%
AATGATGAGGTTCTTATCTC+TGG + chr2_3:57111790-57111809 Msa0301250:three_prime_UTR 35.0%
! TTGTTATTAGTAGAGGTGGA+TGG + chr2_3:57111869-57111888 Msa0301250:three_prime_UTR 35.0%
TACTATAATGAAGCCAATGG+TGG + chr2_3:57111934-57111953 Msa0301250:three_prime_UTR 35.0%
! ATTTTTGCATTAGCCACCAT+TGG - chr2_3:57111950-57111969 None:intergenic 35.0%
! AGTATGTTTCTGAGTTATGG+CGG + chr2_3:57110525-57110544 Msa0301250:CDS 35.0%
AAGAATAGATGATACCTGCT+TGG - chr2_3:57110678-57110697 None:intergenic 35.0%
TATACAATACCCTTGGAAAC+CGG - chr2_3:57110971-57110990 None:intergenic 35.0%
!! GTTTCCAAGGGTATTGTATA+CGG + chr2_3:57110971-57110990 Msa0301250:CDS 35.0%
!! TTTCCAAGGGTATTGTATAC+GGG + chr2_3:57110972-57110991 Msa0301250:CDS 35.0%
GAAATGATCCAAGAATCAAC+TGG + chr2_3:57111176-57111195 Msa0301250:CDS 35.0%
AAAGAAAACAGAGGTTTGAG+TGG + chr2_3:57111253-57111272 Msa0301250:CDS 35.0%
! TATTGTCTTGCTTCGTTTTC+TGG + chr2_3:57111378-57111397 Msa0301250:three_prime_UTR 35.0%
AGTGCATTAGATCTAGACTT+TGG + chr2_3:57111407-57111426 Msa0301250:three_prime_UTR 35.0%
CTTGAAAACCCAAAAACAGT+GGG - chr2_3:57111624-57111643 None:intergenic 35.0%
ACTTGAAAACCCAAAAACAG+TGG - chr2_3:57111625-57111644 None:intergenic 35.0%
AAAACGGTAAACTATGCTCA+AGG + chr2_3:57111757-57111776 Msa0301250:three_prime_UTR 35.0%
AATGATGAGGTTCTTATCTC+TGG + chr2_3:57111790-57111809 Msa0301250:three_prime_UTR 35.0%
! TTGTTATTAGTAGAGGTGGA+TGG + chr2_3:57111869-57111888 Msa0301250:three_prime_UTR 35.0%
TACTATAATGAAGCCAATGG+TGG + chr2_3:57111934-57111953 Msa0301250:three_prime_UTR 35.0%
! ATTTTTGCATTAGCCACCAT+TGG - chr2_3:57111950-57111969 None:intergenic 35.0%
GTGAGACAAACCGAGAAAAT+GGG + chr2_3:57110400-57110419 Msa0301250:exon 40.0%
! TGGATGCATACCCATTTTCT+CGG - chr2_3:57110413-57110432 None:intergenic 40.0%
TTATGTTGTGTACCGAGTGA+GGG + chr2_3:57110922-57110941 Msa0301250:CDS 40.0%
!! ACTTAAGTTGAGTAACTCCC+TGG - chr2_3:57111009-57111028 None:intergenic 40.0%
AGTAGGAATTGAGAACCCTA+AGG - chr2_3:57111087-57111106 None:intergenic 40.0%
TTAGGGTTCTCAATTCCTAC+TGG + chr2_3:57111086-57111105 Msa0301250:CDS 40.0%
TAGGGTTCTCAATTCCTACT+GGG + chr2_3:57111087-57111106 Msa0301250:CDS 40.0%
! TTGGTAAGCCAGTTGATTCT+TGG - chr2_3:57111187-57111206 None:intergenic 40.0%
TCTGCTGGTAAAGAAAACAG+AGG + chr2_3:57111244-57111263 Msa0301250:CDS 40.0%
TTCTAGGCAAAGACACAGAT+CGG - chr2_3:57111461-57111480 None:intergenic 40.0%
TGTCATGTAGCTACAAGTGA+TGG + chr2_3:57111719-57111738 Msa0301250:three_prime_UTR 40.0%
AGGCACATTGATGAATGATG+AGG + chr2_3:57111777-57111796 Msa0301250:three_prime_UTR 40.0%
GTGAGACAAACCGAGAAAAT+GGG + chr2_3:57110400-57110419 Msa0301250:exon 40.0%
! TGGATGCATACCCATTTTCT+CGG - chr2_3:57110413-57110432 None:intergenic 40.0%
TTATGTTGTGTACCGAGTGA+GGG + chr2_3:57110922-57110941 Msa0301250:CDS 40.0%
!! ACTTAAGTTGAGTAACTCCC+TGG - chr2_3:57111009-57111028 None:intergenic 40.0%
AGTAGGAATTGAGAACCCTA+AGG - chr2_3:57111087-57111106 None:intergenic 40.0%
TTAGGGTTCTCAATTCCTAC+TGG + chr2_3:57111086-57111105 Msa0301250:CDS 40.0%
TAGGGTTCTCAATTCCTACT+GGG + chr2_3:57111087-57111106 Msa0301250:CDS 40.0%
! TTGGTAAGCCAGTTGATTCT+TGG - chr2_3:57111187-57111206 None:intergenic 40.0%
TCTGCTGGTAAAGAAAACAG+AGG + chr2_3:57111244-57111263 Msa0301250:CDS 40.0%
TTCTAGGCAAAGACACAGAT+CGG - chr2_3:57111461-57111480 None:intergenic 40.0%
TGTCATGTAGCTACAAGTGA+TGG + chr2_3:57111719-57111738 Msa0301250:three_prime_UTR 40.0%
AGGCACATTGATGAATGATG+AGG + chr2_3:57111777-57111796 Msa0301250:three_prime_UTR 40.0%
CGTGAGACAAACCGAGAAAA+TGG + chr2_3:57110399-57110418 Msa0301250:exon 45.0%
GAAACAGCAGCTGCAATAGA+TGG - chr2_3:57110433-57110452 None:intergenic 45.0%
! GTTATGGCGGAAGAAGCAAT+CGG + chr2_3:57110538-57110557 Msa0301250:CDS 45.0%
GTTATGTTGTGTACCGAGTG+AGG + chr2_3:57110921-57110940 Msa0301250:CDS 45.0%
CTTCCCGTATACAATACCCT+TGG - chr2_3:57110978-57110997 None:intergenic 45.0%
TGAGTAACTCCCTGGTTAGT+GGG - chr2_3:57111001-57111020 None:intergenic 45.0%
TTGAGTAACTCCCTGGTTAG+TGG - chr2_3:57111002-57111021 None:intergenic 45.0%
CAATTCCTACTGGGTCAATG+AGG + chr2_3:57111096-57111115 Msa0301250:CDS 45.0%
AGAATCCTCATTGACCCAGT+AGG - chr2_3:57111104-57111123 None:intergenic 45.0%
CAATCCTGTCCACAAGCATA+GGG + chr2_3:57111204-57111223 Msa0301250:CDS 45.0%
AACAGAGGTTTGAGTGGCAA+AGG + chr2_3:57111259-57111278 Msa0301250:CDS 45.0%
ACAGAGGTTTGAGTGGCAAA+GGG + chr2_3:57111260-57111279 Msa0301250:CDS 45.0%
! ACGGTATCACCCACTGTTTT+TGG + chr2_3:57111612-57111631 Msa0301250:three_prime_UTR 45.0%
!! CGGTATCACCCACTGTTTTT+GGG + chr2_3:57111613-57111632 Msa0301250:three_prime_UTR 45.0%
CAGTAACACCTGCTCTCATT+TGG + chr2_3:57111672-57111691 Msa0301250:three_prime_UTR 45.0%
TTTGACAGCCAAATGAGAGC+AGG - chr2_3:57111683-57111702 None:intergenic 45.0%
AGGTTCTTATCTCTGGTGTC+TGG + chr2_3:57111797-57111816 Msa0301250:three_prime_UTR 45.0%
CGTGAGACAAACCGAGAAAA+TGG + chr2_3:57110399-57110418 Msa0301250:exon 45.0%
GAAACAGCAGCTGCAATAGA+TGG - chr2_3:57110433-57110452 None:intergenic 45.0%
! GTTATGGCGGAAGAAGCAAT+CGG + chr2_3:57110538-57110557 Msa0301250:CDS 45.0%
GTTATGTTGTGTACCGAGTG+AGG + chr2_3:57110921-57110940 Msa0301250:CDS 45.0%
CTTCCCGTATACAATACCCT+TGG - chr2_3:57110978-57110997 None:intergenic 45.0%
TGAGTAACTCCCTGGTTAGT+GGG - chr2_3:57111001-57111020 None:intergenic 45.0%
TTGAGTAACTCCCTGGTTAG+TGG - chr2_3:57111002-57111021 None:intergenic 45.0%
CAATTCCTACTGGGTCAATG+AGG + chr2_3:57111096-57111115 Msa0301250:CDS 45.0%
AGAATCCTCATTGACCCAGT+AGG - chr2_3:57111104-57111123 None:intergenic 45.0%
CAATCCTGTCCACAAGCATA+GGG + chr2_3:57111204-57111223 Msa0301250:CDS 45.0%
AACAGAGGTTTGAGTGGCAA+AGG + chr2_3:57111259-57111278 Msa0301250:CDS 45.0%
ACAGAGGTTTGAGTGGCAAA+GGG + chr2_3:57111260-57111279 Msa0301250:CDS 45.0%
! ACGGTATCACCCACTGTTTT+TGG + chr2_3:57111612-57111631 Msa0301250:three_prime_UTR 45.0%
!! CGGTATCACCCACTGTTTTT+GGG + chr2_3:57111613-57111632 Msa0301250:three_prime_UTR 45.0%
CAGTAACACCTGCTCTCATT+TGG + chr2_3:57111672-57111691 Msa0301250:three_prime_UTR 45.0%
TTTGACAGCCAAATGAGAGC+AGG - chr2_3:57111683-57111702 None:intergenic 45.0%
AGGTTCTTATCTCTGGTGTC+TGG + chr2_3:57111797-57111816 Msa0301250:three_prime_UTR 45.0%
! TTTCTCGGTTTGTCTCACGC+TGG - chr2_3:57110398-57110417 None:intergenic 50.0%
TGAGATTCATGCAGCGTGTG+AGG + chr2_3:57110567-57110586 Msa0301250:CDS 50.0%
!! GCTTGGCCTTGTAACCCAAA+CGG - chr2_3:57110661-57110680 None:intergenic 50.0%
! TTTGGGTTACAAGGCCAAGC+AGG + chr2_3:57110661-57110680 Msa0301250:CDS 50.0%
TACGTAGAGGTGGGAGAAAG+AGG + chr2_3:57110945-57110964 Msa0301250:CDS 50.0%
! AGAAAGAGGCCGGTTTCCAA+GGG + chr2_3:57110959-57110978 Msa0301250:CDS 50.0%
GAGTAAGAGATCTGTTGCCG+AGG + chr2_3:57111036-57111055 Msa0301250:CDS 50.0%
CCTATGCTTGTGGACAGGAT+TGG - chr2_3:57111206-57111225 None:intergenic 50.0%
CCAATCCTGTCCACAAGCAT+AGG + chr2_3:57111203-57111222 Msa0301250:CDS 50.0%
AGTTCCCTATGCTTGTGGAC+AGG - chr2_3:57111211-57111230 None:intergenic 50.0%
CACGAAGTTCCCTATGCTTG+TGG - chr2_3:57111216-57111235 None:intergenic 50.0%
CACAAGCATAGGGAACTTCG+TGG + chr2_3:57111214-57111233 Msa0301250:CDS 50.0%
! TTTCTCGGTTTGTCTCACGC+TGG - chr2_3:57110398-57110417 None:intergenic 50.0%
TGAGATTCATGCAGCGTGTG+AGG + chr2_3:57110567-57110586 Msa0301250:CDS 50.0%
!! GCTTGGCCTTGTAACCCAAA+CGG - chr2_3:57110661-57110680 None:intergenic 50.0%
! TTTGGGTTACAAGGCCAAGC+AGG + chr2_3:57110661-57110680 Msa0301250:CDS 50.0%
TACGTAGAGGTGGGAGAAAG+AGG + chr2_3:57110945-57110964 Msa0301250:CDS 50.0%
! AGAAAGAGGCCGGTTTCCAA+GGG + chr2_3:57110959-57110978 Msa0301250:CDS 50.0%
GAGTAAGAGATCTGTTGCCG+AGG + chr2_3:57111036-57111055 Msa0301250:CDS 50.0%
CCTATGCTTGTGGACAGGAT+TGG - chr2_3:57111206-57111225 None:intergenic 50.0%
CCAATCCTGTCCACAAGCAT+AGG + chr2_3:57111203-57111222 Msa0301250:CDS 50.0%
AGTTCCCTATGCTTGTGGAC+AGG - chr2_3:57111211-57111230 None:intergenic 50.0%
CACGAAGTTCCCTATGCTTG+TGG - chr2_3:57111216-57111235 None:intergenic 50.0%
CACAAGCATAGGGAACTTCG+TGG + chr2_3:57111214-57111233 Msa0301250:CDS 50.0%
TCATGCAGCGTGTGAGGTGT+TGG + chr2_3:57110573-57110592 Msa0301250:CDS 55.0%
! CATGCAGCGTGTGAGGTGTT+GGG + chr2_3:57110574-57110593 Msa0301250:CDS 55.0%
GGGTCTGGTGAGACGAACAA+TGG - chr2_3:57110618-57110637 None:intergenic 55.0%
TTTGTCAGGACGAGTGGGTC+TGG - chr2_3:57110633-57110652 None:intergenic 55.0%
! CGAGCTTTGTCAGGACGAGT+GGG - chr2_3:57110638-57110657 None:intergenic 55.0%
TCCTGACAAAGCTCGCCGTT+TGG + chr2_3:57110643-57110662 Msa0301250:CDS 55.0%
CCTGACAAAGCTCGCCGTTT+GGG + chr2_3:57110644-57110663 Msa0301250:CDS 55.0%
! AGCTCGCCGTTTGGGTTACA+AGG + chr2_3:57110652-57110671 Msa0301250:CDS 55.0%
! TACCGAGTGAGGGTACGTAG+AGG + chr2_3:57110932-57110951 Msa0301250:CDS 55.0%
CACCTCTACGTACCCTCACT+CGG - chr2_3:57110937-57110956 None:intergenic 55.0%
! GAGTGAGGGTACGTAGAGGT+GGG + chr2_3:57110936-57110955 Msa0301250:CDS 55.0%
TAGAGGTGGGAGAAAGAGGC+CGG + chr2_3:57110949-57110968 Msa0301250:CDS 55.0%
! GAGAAAGAGGCCGGTTTCCA+AGG + chr2_3:57110958-57110977 Msa0301250:CDS 55.0%
ATACGGGAAGCCCACTAACC+AGG + chr2_3:57110988-57111007 Msa0301250:CDS 55.0%
TACGGGAAGCCCACTAACCA+GGG + chr2_3:57110989-57111008 Msa0301250:CDS 55.0%
! GAGGAAGCTTGGTGGCCTTA+GGG + chr2_3:57111069-57111088 Msa0301250:CDS 55.0%
CTTCGTGGTCTCACTTCTGC+TGG + chr2_3:57111229-57111248 Msa0301250:CDS 55.0%
AGTTTGCCCTGCGAGATGGA+CGG - chr2_3:57111303-57111322 None:intergenic 55.0%
TTCCAGTTTGCCCTGCGAGA+TGG - chr2_3:57111307-57111326 None:intergenic 55.0%
TCATGCAGCGTGTGAGGTGT+TGG + chr2_3:57110573-57110592 Msa0301250:CDS 55.0%
! CATGCAGCGTGTGAGGTGTT+GGG + chr2_3:57110574-57110593 Msa0301250:CDS 55.0%
GGGTCTGGTGAGACGAACAA+TGG - chr2_3:57110618-57110637 None:intergenic 55.0%
TTTGTCAGGACGAGTGGGTC+TGG - chr2_3:57110633-57110652 None:intergenic 55.0%
! CGAGCTTTGTCAGGACGAGT+GGG - chr2_3:57110638-57110657 None:intergenic 55.0%
TCCTGACAAAGCTCGCCGTT+TGG + chr2_3:57110643-57110662 Msa0301250:CDS 55.0%
CCTGACAAAGCTCGCCGTTT+GGG + chr2_3:57110644-57110663 Msa0301250:CDS 55.0%
! AGCTCGCCGTTTGGGTTACA+AGG + chr2_3:57110652-57110671 Msa0301250:CDS 55.0%
! TACCGAGTGAGGGTACGTAG+AGG + chr2_3:57110932-57110951 Msa0301250:CDS 55.0%
CACCTCTACGTACCCTCACT+CGG - chr2_3:57110937-57110956 None:intergenic 55.0%
! GAGTGAGGGTACGTAGAGGT+GGG + chr2_3:57110936-57110955 Msa0301250:CDS 55.0%
TAGAGGTGGGAGAAAGAGGC+CGG + chr2_3:57110949-57110968 Msa0301250:CDS 55.0%
! GAGAAAGAGGCCGGTTTCCA+AGG + chr2_3:57110958-57110977 Msa0301250:CDS 55.0%
ATACGGGAAGCCCACTAACC+AGG + chr2_3:57110988-57111007 Msa0301250:CDS 55.0%
TACGGGAAGCCCACTAACCA+GGG + chr2_3:57110989-57111008 Msa0301250:CDS 55.0%
! GAGGAAGCTTGGTGGCCTTA+GGG + chr2_3:57111069-57111088 Msa0301250:CDS 55.0%
CTTCGTGGTCTCACTTCTGC+TGG + chr2_3:57111229-57111248 Msa0301250:CDS 55.0%
AGTTTGCCCTGCGAGATGGA+CGG - chr2_3:57111303-57111322 None:intergenic 55.0%
TTCCAGTTTGCCCTGCGAGA+TGG - chr2_3:57111307-57111326 None:intergenic 55.0%
! TCGGTTTGTCTCACGCTGGC+AGG - chr2_3:57110394-57110413 None:intergenic 60.0%
! GCGAGCTTTGTCAGGACGAG+TGG - chr2_3:57110639-57110658 None:intergenic 60.0%
! CCCAAACGGCGAGCTTTGTC+AGG - chr2_3:57110647-57110666 None:intergenic 60.0%
! CGAGTGAGGGTACGTAGAGG+TGG + chr2_3:57110935-57110954 Msa0301250:CDS 60.0%
! GGAGGAAGCTTGGTGGCCTT+AGG + chr2_3:57111068-57111087 Msa0301250:CDS 60.0%
! TGCGAGATGGACGGGCTTTG+TGG - chr2_3:57111294-57111313 None:intergenic 60.0%
ACAAAGCCCGTCCATCTCGC+AGG + chr2_3:57111293-57111312 Msa0301250:CDS 60.0%
CAAAGCCCGTCCATCTCGCA+GGG + chr2_3:57111294-57111313 Msa0301250:CDS 60.0%
GTTTGCCCTGCGAGATGGAC+GGG - chr2_3:57111302-57111321 None:intergenic 60.0%
GTCCATCTCGCAGGGCAAAC+TGG + chr2_3:57111302-57111321 Msa0301250:CDS 60.0%
! TCGGTTTGTCTCACGCTGGC+AGG - chr2_3:57110394-57110413 None:intergenic 60.0%
! GCGAGCTTTGTCAGGACGAG+TGG - chr2_3:57110639-57110658 None:intergenic 60.0%
! CCCAAACGGCGAGCTTTGTC+AGG - chr2_3:57110647-57110666 None:intergenic 60.0%
! CGAGTGAGGGTACGTAGAGG+TGG + chr2_3:57110935-57110954 Msa0301250:CDS 60.0%
! GGAGGAAGCTTGGTGGCCTT+AGG + chr2_3:57111068-57111087 Msa0301250:CDS 60.0%
! TGCGAGATGGACGGGCTTTG+TGG - chr2_3:57111294-57111313 None:intergenic 60.0%
ACAAAGCCCGTCCATCTCGC+AGG + chr2_3:57111293-57111312 Msa0301250:CDS 60.0%
CAAAGCCCGTCCATCTCGCA+GGG + chr2_3:57111294-57111313 Msa0301250:CDS 60.0%
GTTTGCCCTGCGAGATGGAC+GGG - chr2_3:57111302-57111321 None:intergenic 60.0%
GTCCATCTCGCAGGGCAAAC+TGG + chr2_3:57111302-57111321 Msa0301250:CDS 60.0%
! TCTGTTGCCGAGGAGCGTGC+TGG + chr2_3:57111046-57111065 Msa0301250:CDS 65.0%
! CTGTTGCCGAGGAGCGTGCT+GGG + chr2_3:57111047-57111066 Msa0301250:CDS 65.0%
CTTCCTCCCAGCACGCTCCT+CGG - chr2_3:57111056-57111075 None:intergenic 65.0%
GAGCGTGCTGGGAGGAAGCT+TGG + chr2_3:57111058-57111077 Msa0301250:CDS 65.0%
CGTGCTGGGAGGAAGCTTGG+TGG + chr2_3:57111061-57111080 Msa0301250:CDS 65.0%
! TCTGTTGCCGAGGAGCGTGC+TGG + chr2_3:57111046-57111065 Msa0301250:CDS 65.0%
! CTGTTGCCGAGGAGCGTGCT+GGG + chr2_3:57111047-57111066 Msa0301250:CDS 65.0%
CTTCCTCCCAGCACGCTCCT+CGG - chr2_3:57111056-57111075 None:intergenic 65.0%
GAGCGTGCTGGGAGGAAGCT+TGG + chr2_3:57111058-57111077 Msa0301250:CDS 65.0%
CGTGCTGGGAGGAAGCTTGG+TGG + chr2_3:57111061-57111080 Msa0301250:CDS 65.0%
! TTGCCGAGGAGCGTGCTGGG+AGG + chr2_3:57111050-57111069 Msa0301250:CDS 70.0%
! TTGCCGAGGAGCGTGCTGGG+AGG + chr2_3:57111050-57111069 Msa0301250:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 57110383 57112052 57110383 ID=Msa0301250;Name=Msa0301250
chr2_3 mRNA 57110383 57112052 57110383 ID=Msa0301250-mRNA-1;Parent=Msa0301250;Name=Msa0301250-mRNA-1;_AED=0.03;_eAED=0.03;_QI=35|1|1|1|1|1|3|689|204
chr2_3 exon 57110383 57110421 57110383 ID=Msa0301250-mRNA-1:exon:18381;Parent=Msa0301250-mRNA-1
chr2_3 exon 57110516 57110682 57110516 ID=Msa0301250-mRNA-1:exon:18382;Parent=Msa0301250-mRNA-1
chr2_3 exon 57110920 57112052 57110920 ID=Msa0301250-mRNA-1:exon:18383;Parent=Msa0301250-mRNA-1
chr2_3 five_prime_UTR 57110383 57110417 57110383 ID=Msa0301250-mRNA-1:five_prime_utr;Parent=Msa0301250-mRNA-1
chr2_3 CDS 57110418 57110421 57110418 ID=Msa0301250-mRNA-1:cds;Parent=Msa0301250-mRNA-1
chr2_3 CDS 57110516 57110682 57110516 ID=Msa0301250-mRNA-1:cds;Parent=Msa0301250-mRNA-1
chr2_3 CDS 57110920 57111363 57110920 ID=Msa0301250-mRNA-1:cds;Parent=Msa0301250-mRNA-1
chr2_3 three_prime_UTR 57111364 57112052 57111364 ID=Msa0301250-mRNA-1:three_prime_utr;Parent=Msa0301250-mRNA-1
Gene Sequence

>Msa0301250

ATGGGTGCATACAAGTATGTTTCTGAGTTATGGCGGAAGAAGCAATCGGATGTGATGAGATTCATGCAGCGTGTGAGGTGTTGGGAGTATCGTCAACAATCTTCCATTGTTCGTCTCACCAGACCCACTCGTCCTGACAAAGCTCGCCGTTTGGGTTACAAGGCCAAGCAGGGTTATGTTGTGTACCGAGTGAGGGTACGTAGAGGTGGGAGAAAGAGGCCGGTTTCCAAGGGTATTGTATACGGGAAGCCCACTAACCAGGGAGTTACTCAACTTAAGTTTCAAAGGAGTAAGAGATCTGTTGCCGAGGAGCGTGCTGGGAGGAAGCTTGGTGGCCTTAGGGTTCTCAATTCCTACTGGGTCAATGAGGATTCTACCTTCAAGTATTTTGAGGTCATTTTGGTTGATGTTGCTCATAGTGCTATAAGAAATGATCCAAGAATCAACTGGCTTACCAATCCTGTCCACAAGCATAGGGAACTTCGTGGTCTCACTTCTGCTGGTAAAGAAAACAGAGGTTTGAGTGGCAAAGGGCATCGTTACCACAAAGCCCGTCCATCTCGCAGGGCAAACTGGAAGAGAAACAACACTCTGTCTCTCCGTCGTTATCGTTGA

Protein sequence

>Msa0301250

MGAYKYVSELWRKKQSDVMRFMQRVRCWEYRQQSSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVSKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTFKYFEVILVDVAHSAIRNDPRINWLTNPVHKHRELRGLTSAGKENRGLSGKGHRYHKARPSRRANWKRNNTLSLRRYR*