AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0313060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0313060 MtrunA17_Chr3g0118291 100.000 204 0 0 1 204 1 204 6.78e-150 414
Msa0313060 MtrunA17_Chr2g0282541 99.510 204 1 0 1 204 49 252 1.89e-149 415
Msa0313060 MtrunA17_Chr7g0224171 90.323 62 6 0 1 62 1 62 1.93e-35 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0313060 AT4G16720.1 88.235 204 24 0 1 204 1 204 9.00e-122 343
Msa0313060 AT4G17390.1 87.745 204 25 0 1 204 1 204 1.88e-121 342

Find 90 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGAGACAAACCGAGAAAA+TGG 0.255682 2_4:-8330203 Msa0313060:exon
GGAGGAAGCTTGGTGGCCTT+AGG 0.282780 2_4:-8329534 Msa0313060:CDS
GTTTCCAAGGGTATTGTATA+CGG 0.297546 2_4:-8329631 Msa0313060:CDS
TTGGTAAGCCAGTTGATTCT+TGG 0.325346 2_4:+8329418 None:intergenic
TCCTGACAAAGCTCGCCGTT+TGG 0.353079 2_4:-8329959 Msa0313060:CDS
ACAAGTATGTTTCTGAGTTA+TGG 0.369598 2_4:-8330080 Msa0313060:CDS
TTAGGGTTCTCAATTCCTAC+TGG 0.369741 2_4:-8329516 Msa0313060:CDS
CCTGACAAAGCTCGCCGTTT+GGG 0.382164 2_4:-8329958 Msa0313060:CDS
GTCCATCTCGCAGGGCAAAC+TGG 0.382984 2_4:-8329300 Msa0313060:CDS
AGGTTCTTATCTCTGGTGTC+TGG 0.388442 2_4:-8328804 Msa0313060:three_prime_UTR
ATAATTTAATTATCAAGTTA+TGG 0.389735 2_4:-8329172 Msa0313060:three_prime_UTR
TGCGAGATGGACGGGCTTTG+TGG 0.391277 2_4:+8329311 None:intergenic
GAGGAAGCTTGGTGGCCTTA+GGG 0.392690 2_4:-8329533 Msa0313060:CDS
AATGATGAGGTTCTTATCTC+TGG 0.417708 2_4:-8328811 Msa0313060:three_prime_UTR
AATGACCTCAAAATACTTGA+AGG 0.426532 2_4:+8329477 None:intergenic
AGCTCGCCGTTTGGGTTACA+AGG 0.427870 2_4:-8329950 Msa0313060:CDS
TCTGTTGCCGAGGAGCGTGC+TGG 0.428375 2_4:-8329556 Msa0313060:CDS
CCCAAACGGCGAGCTTTGTC+AGG 0.428600 2_4:+8329958 None:intergenic
AGTGCATTATATCTAGACTT+TGG 0.433133 2_4:-8329195 Msa0313060:three_prime_UTR
GTTTGCCCTGCGAGATGGAC+GGG 0.443094 2_4:+8329303 None:intergenic
TCGGTTTGTCTCACGCTGGC+AGG 0.454772 2_4:+8330211 None:intergenic
TTTGTCAGGACGAGTGGGTC+TGG 0.461552 2_4:+8329972 None:intergenic
CAGTAACACCTGCTCTCATT+TGG 0.466095 2_4:-8328930 Msa0313060:three_prime_UTR
TATACAATACCCTTGGAAAC+CGG 0.467374 2_4:+8329634 None:intergenic
CTGTTGCCGAGGAGCGTGCT+GGG 0.471029 2_4:-8329555 Msa0313060:CDS
GAGCGTGCTGGGAGGAAGCT+TGG 0.477629 2_4:-8329544 Msa0313060:CDS
CCAATCCTGTCCACAAGCAT+AGG 0.488032 2_4:-8329399 Msa0313060:CDS
TTCCAGTTTGCCCTGCGAGA+TGG 0.489110 2_4:+8329298 None:intergenic
TTACTCAACTTAAGTTTCAA+AGG 0.490055 2_4:-8329588 Msa0313060:CDS
TACGTAGAGGTGGGAGAAAG+AGG 0.490900 2_4:-8329657 Msa0313060:CDS
ACAAAGCCCGTCCATCTCGC+AGG 0.495488 2_4:-8329309 Msa0313060:CDS
CTTCGTGGTCTCACTTCTGC+TGG 0.495517 2_4:-8329373 Msa0313060:CDS
TTGAGTAACTCCCTGGTTAG+TGG 0.499501 2_4:+8329603 None:intergenic
TCATGCAGCGTGTGAGGTGT+TGG 0.501162 2_4:-8330029 Msa0313060:CDS
CATGCAGCGTGTGAGGTGTT+GGG 0.510206 2_4:-8330028 Msa0313060:CDS
AGTTTGCCCTGCGAGATGGA+CGG 0.510514 2_4:+8329302 None:intergenic
GAGAAAGAGGCCGGTTTCCA+AGG 0.516642 2_4:-8329644 Msa0313060:CDS
TGAGTAACTCCCTGGTTAGT+GGG 0.518159 2_4:+8329604 None:intergenic
GTGAGACAAACCGAGAAAAT+GGG 0.520353 2_4:-8330202 Msa0313060:intron
CCTATGCTTGTGGACAGGAT+TGG 0.520921 2_4:+8329399 None:intergenic
ATAATATCATAACAAAATCA+AGG 0.527913 2_4:+8328742 None:intergenic
CACGAAGTTCCCTATGCTTG+TGG 0.529755 2_4:+8329389 None:intergenic
GAAATGATCCAAGAATCAAC+TGG 0.530060 2_4:-8329426 Msa0313060:CDS
AACAGAGGTTTGAGTGGCAA+AGG 0.530737 2_4:-8329343 Msa0313060:CDS
TTTCCAAGGGTATTGTATAC+GGG 0.532253 2_4:-8329630 Msa0313060:CDS
TTTGGGTTACAAGGCCAAGC+AGG 0.540516 2_4:-8329941 Msa0313060:intron
AGTTCCCTATGCTTGTGGAC+AGG 0.542094 2_4:+8329394 None:intergenic
CGTGCTGGGAGGAAGCTTGG+TGG 0.543008 2_4:-8329541 Msa0313060:CDS
ATACGGGAAGCCCACTAACC+AGG 0.546286 2_4:-8329614 Msa0313060:CDS
GCGAGCTTTGTCAGGACGAG+TGG 0.547527 2_4:+8329966 None:intergenic
TAGGGTTCTCAATTCCTACT+GGG 0.548434 2_4:-8329515 Msa0313060:CDS
CTTCCTCCCAGCACGCTCCT+CGG 0.550992 2_4:+8329549 None:intergenic
CACCTCTACGTACCCTCACT+CGG 0.553002 2_4:+8329668 None:intergenic
AAGAATAGATGATACCTGCT+TGG 0.559188 2_4:+8329927 None:intergenic
CAATCCTGTCCACAAGCATA+GGG 0.561253 2_4:-8329398 Msa0313060:CDS
ACTTAAGTTGAGTAACTCCC+TGG 0.562594 2_4:+8329596 None:intergenic
CTTCCCGTATACAATACCCT+TGG 0.574843 2_4:+8329627 None:intergenic
TTCTAGGCAAAGACACAGAT+CGG 0.576700 2_4:+8329144 None:intergenic
CAATTCCTACTGGGTCAATG+AGG 0.583661 2_4:-8329506 Msa0313060:CDS
AGAAAGAGGCCGGTTTCCAA+GGG 0.585417 2_4:-8329643 Msa0313060:CDS
TTTGACAGCCAAATGAGAGC+AGG 0.586910 2_4:+8328922 None:intergenic
CGAGTGAGGGTACGTAGAGG+TGG 0.590318 2_4:-8329667 Msa0313060:CDS
ACAGAGGTTTGAGTGGCAAA+GGG 0.593708 2_4:-8329342 Msa0313060:CDS
GCTTGGCCTTGTAACCCAAA+CGG 0.594502 2_4:+8329944 None:intergenic
TAGAGGTGGGAGAAAGAGGC+CGG 0.597426 2_4:-8329653 Msa0313060:CDS
CAAAGCCCGTCCATCTCGCA+GGG 0.599732 2_4:-8329308 Msa0313060:CDS
CACAAGCATAGGGAACTTCG+TGG 0.602517 2_4:-8329388 Msa0313060:CDS
GAGTAAGAGATCTGTTGCCG+AGG 0.608981 2_4:-8329566 Msa0313060:CDS
TACGGGAAGCCCACTAACCA+GGG 0.619308 2_4:-8329613 Msa0313060:CDS
GTTATGTTGTGTACCGAGTG+AGG 0.619671 2_4:-8329681 Msa0313060:CDS
AGAATCCTCATTGACCCAGT+AGG 0.619890 2_4:+8329501 None:intergenic
AAAGAACAAATGATCAAACA+AGG 0.621326 2_4:+8329078 None:intergenic
AAAACGGTAAACTATGCTCA+AGG 0.622386 2_4:-8328844 Msa0313060:three_prime_UTR
CGAGCTTTGTCAGGACGAGT+GGG 0.623786 2_4:+8329967 None:intergenic
GGGTCTGGTGAGACGAACAA+TGG 0.629081 2_4:+8329987 None:intergenic
AGGCACATTGATGAATGATG+AGG 0.635465 2_4:-8328824 Msa0313060:three_prime_UTR
TGAGATTCATGCAGCGTGTG+AGG 0.638236 2_4:-8330035 Msa0313060:CDS
AAAGAAAACAGAGGTTTGAG+TGG 0.638472 2_4:-8329349 Msa0313060:CDS
AGTATGTTTCTGAGTTATGG+CGG 0.642445 2_4:-8330077 Msa0313060:CDS
AGTAGGAATTGAGAACCCTA+AGG 0.644888 2_4:+8329518 None:intergenic
TTATGTTGTGTACCGAGTGA+GGG 0.645103 2_4:-8329680 Msa0313060:CDS
TTTCTCGGTTTGTCTCACGC+TGG 0.649311 2_4:+8330207 None:intergenic
GTCATGTAGCTATCAAGTGA+TGG 0.658852 2_4:-8328882 Msa0313060:three_prime_UTR
TTGCCGAGGAGCGTGCTGGG+AGG 0.662735 2_4:-8329552 Msa0313060:CDS
AAGAACAAATGATCAAACAA+GGG 0.666938 2_4:+8329079 None:intergenic
GTTATGGCGGAAGAAGCAAT+CGG 0.676275 2_4:-8330064 Msa0313060:CDS
TCTGCTGGTAAAGAAAACAG+AGG 0.678817 2_4:-8329358 Msa0313060:CDS
GAGTGAGGGTACGTAGAGGT+GGG 0.682033 2_4:-8329666 Msa0313060:CDS
AGTAAAATCAACGATAACGA+CGG 0.699472 2_4:+8329254 None:intergenic
TACCGAGTGAGGGTACGTAG+AGG 0.717794 2_4:-8329670 Msa0313060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTTAATTATCAAGTTA+TGG - chr2_4:8329795-8329814 Msa0313060:intron 10.0%
!! ATAATTTAATTATCAAGTTA+TGG - chr2_4:8329795-8329814 Msa0313060:intron 10.0%
!!! GTTATTTGTGAATTTTGAAT+AGG - chr2_4:8328859-8328878 Msa0313060:three_prime_UTR 20.0%
!! AAACAAGCTTATTATTGATA+AGG + chr2_4:8329083-8329102 None:intergenic 20.0%
!! CATCAATATAAGTTCTATTA+AGG + chr2_4:8329218-8329237 None:intergenic 20.0%
!!! ATTTGAACTTCATTGATTTT+AGG - chr2_4:8329263-8329282 Msa0313060:CDS 20.0%
!!! TTTGAACTTCATTGATTTTA+GGG - chr2_4:8329264-8329283 Msa0313060:CDS 20.0%
!!! GTTATTTGTGAATTTTGAAT+AGG - chr2_4:8328859-8328878 Msa0313060:three_prime_UTR 20.0%
!! AAACAAGCTTATTATTGATA+AGG + chr2_4:8329083-8329102 None:intergenic 20.0%
!! CATCAATATAAGTTCTATTA+AGG + chr2_4:8329218-8329237 None:intergenic 20.0%
!!! ATTTGAACTTCATTGATTTT+AGG - chr2_4:8329263-8329282 Msa0313060:CDS 20.0%
!!! TTTGAACTTCATTGATTTTA+GGG - chr2_4:8329264-8329283 Msa0313060:CDS 20.0%
! AGAAAGAATTAAAGCATGTT+TGG + chr2_4:8329148-8329167 None:intergenic 25.0%
! TTACTCAACTTAAGTTTCAA+AGG - chr2_4:8329379-8329398 Msa0313060:CDS 25.0%
! AACAACAAAAATGAGTTTCT+AGG + chr2_4:8329842-8329861 None:intergenic 25.0%
! AAGAACAAATGATCAAACAA+GGG + chr2_4:8329891-8329910 None:intergenic 25.0%
! AAAGAACAAATGATCAAACA+AGG + chr2_4:8329892-8329911 None:intergenic 25.0%
!!! CTATGTTTTGCTTTGTTTTT+TGG - chr2_4:8329948-8329967 Msa0313060:CDS 25.0%
! AGAAAGAATTAAAGCATGTT+TGG + chr2_4:8329148-8329167 None:intergenic 25.0%
! TTACTCAACTTAAGTTTCAA+AGG - chr2_4:8329379-8329398 Msa0313060:CDS 25.0%
! AACAACAAAAATGAGTTTCT+AGG + chr2_4:8329842-8329861 None:intergenic 25.0%
! AAGAACAAATGATCAAACAA+GGG + chr2_4:8329891-8329910 None:intergenic 25.0%
! AAAGAACAAATGATCAAACA+AGG + chr2_4:8329892-8329911 None:intergenic 25.0%
!!! CTATGTTTTGCTTTGTTTTT+TGG - chr2_4:8329948-8329967 Msa0313060:CDS 25.0%
! ACAAGTATGTTTCTGAGTTA+TGG - chr2_4:8328887-8328906 Msa0313060:three_prime_UTR 30.0%
GAATTAAAGCATGTTTGGAT+TGG + chr2_4:8329143-8329162 None:intergenic 30.0%
! TTCTACCTTCAAGTATTTTG+AGG - chr2_4:8329485-8329504 Msa0313060:CDS 30.0%
AATGACCTCAAAATACTTGA+AGG + chr2_4:8329493-8329512 None:intergenic 30.0%
!!! CAAGTATTTTGAGGTCATTT+TGG - chr2_4:8329494-8329513 Msa0313060:CDS 30.0%
AGTAAAATCAACGATAACGA+CGG + chr2_4:8329716-8329735 None:intergenic 30.0%
AGTGCATTATATCTAGACTT+TGG - chr2_4:8329772-8329791 Msa0313060:intron 30.0%
!!! CTTTGTTTTTTGGATTGACA+CGG - chr2_4:8329958-8329977 Msa0313060:CDS 30.0%
! GTTCTTTTGTAGCTTCAAAA+CGG - chr2_4:8330107-8330126 Msa0313060:intron 30.0%
! ACAAGTATGTTTCTGAGTTA+TGG - chr2_4:8328887-8328906 Msa0313060:three_prime_UTR 30.0%
GAATTAAAGCATGTTTGGAT+TGG + chr2_4:8329143-8329162 None:intergenic 30.0%
! TTCTACCTTCAAGTATTTTG+AGG - chr2_4:8329485-8329504 Msa0313060:CDS 30.0%
AATGACCTCAAAATACTTGA+AGG + chr2_4:8329493-8329512 None:intergenic 30.0%
!!! CAAGTATTTTGAGGTCATTT+TGG - chr2_4:8329494-8329513 Msa0313060:CDS 30.0%
AGTAAAATCAACGATAACGA+CGG + chr2_4:8329716-8329735 None:intergenic 30.0%
AGTGCATTATATCTAGACTT+TGG - chr2_4:8329772-8329791 Msa0313060:intron 30.0%
!!! CTTTGTTTTTTGGATTGACA+CGG - chr2_4:8329958-8329977 Msa0313060:CDS 30.0%
! GTTCTTTTGTAGCTTCAAAA+CGG - chr2_4:8330107-8330126 Msa0313060:intron 30.0%
!! CTGTTTCTATTCATTCTCTC+TGG - chr2_4:8328811-8328830 Msa0313060:three_prime_UTR 35.0%
! AGTATGTTTCTGAGTTATGG+CGG - chr2_4:8328890-8328909 Msa0313060:three_prime_UTR 35.0%
AAGAATAGATGATACCTGCT+TGG + chr2_4:8329043-8329062 None:intergenic 35.0%
TATACAATACCCTTGGAAAC+CGG + chr2_4:8329336-8329355 None:intergenic 35.0%
!! GTTTCCAAGGGTATTGTATA+CGG - chr2_4:8329336-8329355 Msa0313060:CDS 35.0%
!! TTTCCAAGGGTATTGTATAC+GGG - chr2_4:8329337-8329356 Msa0313060:CDS 35.0%
GAAATGATCCAAGAATCAAC+TGG - chr2_4:8329541-8329560 Msa0313060:CDS 35.0%
AAAGAAAACAGAGGTTTGAG+TGG - chr2_4:8329618-8329637 Msa0313060:CDS 35.0%
! TATTGTCTTGCTTCGTTTTC+TGG - chr2_4:8329743-8329762 Msa0313060:intron 35.0%
CTTGAAAACCCAAAAACAGT+GGG + chr2_4:8329989-8330008 None:intergenic 35.0%
ACTTGAAAACCCAAAAACAG+TGG + chr2_4:8329990-8330009 None:intergenic 35.0%
AAAACGGTAAACTATGCTCA+AGG - chr2_4:8330123-8330142 Msa0313060:intron 35.0%
AATGATGAGGTTCTTATCTC+TGG - chr2_4:8330156-8330175 Msa0313060:intron 35.0%
!! CTGTTTCTATTCATTCTCTC+TGG - chr2_4:8328811-8328830 Msa0313060:three_prime_UTR 35.0%
! AGTATGTTTCTGAGTTATGG+CGG - chr2_4:8328890-8328909 Msa0313060:three_prime_UTR 35.0%
AAGAATAGATGATACCTGCT+TGG + chr2_4:8329043-8329062 None:intergenic 35.0%
TATACAATACCCTTGGAAAC+CGG + chr2_4:8329336-8329355 None:intergenic 35.0%
!! GTTTCCAAGGGTATTGTATA+CGG - chr2_4:8329336-8329355 Msa0313060:CDS 35.0%
!! TTTCCAAGGGTATTGTATAC+GGG - chr2_4:8329337-8329356 Msa0313060:CDS 35.0%
GAAATGATCCAAGAATCAAC+TGG - chr2_4:8329541-8329560 Msa0313060:CDS 35.0%
AAAGAAAACAGAGGTTTGAG+TGG - chr2_4:8329618-8329637 Msa0313060:CDS 35.0%
! TATTGTCTTGCTTCGTTTTC+TGG - chr2_4:8329743-8329762 Msa0313060:intron 35.0%
CTTGAAAACCCAAAAACAGT+GGG + chr2_4:8329989-8330008 None:intergenic 35.0%
ACTTGAAAACCCAAAAACAG+TGG + chr2_4:8329990-8330009 None:intergenic 35.0%
AAAACGGTAAACTATGCTCA+AGG - chr2_4:8330123-8330142 Msa0313060:intron 35.0%
AATGATGAGGTTCTTATCTC+TGG - chr2_4:8330156-8330175 Msa0313060:intron 35.0%
GTGAGACAAACCGAGAAAAT+GGG - chr2_4:8328765-8328784 Msa0313060:three_prime_UTR 40.0%
! TGGATGCATACCCATTTTCT+CGG + chr2_4:8328778-8328797 None:intergenic 40.0%
TTATGTTGTGTACCGAGTGA+GGG - chr2_4:8329287-8329306 Msa0313060:CDS 40.0%
!! ACTTAAGTTGAGTAACTCCC+TGG + chr2_4:8329374-8329393 None:intergenic 40.0%
AGTAGGAATTGAGAACCCTA+AGG + chr2_4:8329452-8329471 None:intergenic 40.0%
TTAGGGTTCTCAATTCCTAC+TGG - chr2_4:8329451-8329470 Msa0313060:CDS 40.0%
TAGGGTTCTCAATTCCTACT+GGG - chr2_4:8329452-8329471 Msa0313060:CDS 40.0%
! TTGGTAAGCCAGTTGATTCT+TGG + chr2_4:8329552-8329571 None:intergenic 40.0%
TCTGCTGGTAAAGAAAACAG+AGG - chr2_4:8329609-8329628 Msa0313060:CDS 40.0%
TTCTAGGCAAAGACACAGAT+CGG + chr2_4:8329826-8329845 None:intergenic 40.0%
GTCATGTAGCTATCAAGTGA+TGG - chr2_4:8330085-8330104 Msa0313060:CDS 40.0%
AGGCACATTGATGAATGATG+AGG - chr2_4:8330143-8330162 Msa0313060:intron 40.0%
GTGAGACAAACCGAGAAAAT+GGG - chr2_4:8328765-8328784 Msa0313060:three_prime_UTR 40.0%
! TGGATGCATACCCATTTTCT+CGG + chr2_4:8328778-8328797 None:intergenic 40.0%
TTATGTTGTGTACCGAGTGA+GGG - chr2_4:8329287-8329306 Msa0313060:CDS 40.0%
!! ACTTAAGTTGAGTAACTCCC+TGG + chr2_4:8329374-8329393 None:intergenic 40.0%
AGTAGGAATTGAGAACCCTA+AGG + chr2_4:8329452-8329471 None:intergenic 40.0%
TTAGGGTTCTCAATTCCTAC+TGG - chr2_4:8329451-8329470 Msa0313060:CDS 40.0%
TAGGGTTCTCAATTCCTACT+GGG - chr2_4:8329452-8329471 Msa0313060:CDS 40.0%
! TTGGTAAGCCAGTTGATTCT+TGG + chr2_4:8329552-8329571 None:intergenic 40.0%
TCTGCTGGTAAAGAAAACAG+AGG - chr2_4:8329609-8329628 Msa0313060:CDS 40.0%
TTCTAGGCAAAGACACAGAT+CGG + chr2_4:8329826-8329845 None:intergenic 40.0%
GTCATGTAGCTATCAAGTGA+TGG - chr2_4:8330085-8330104 Msa0313060:CDS 40.0%
AGGCACATTGATGAATGATG+AGG - chr2_4:8330143-8330162 Msa0313060:intron 40.0%
CGTGAGACAAACCGAGAAAA+TGG - chr2_4:8328764-8328783 Msa0313060:three_prime_UTR 45.0%
GAAACAGCAGCTGCAATAGA+TGG + chr2_4:8328798-8328817 None:intergenic 45.0%
! GTTATGGCGGAAGAAGCAAT+CGG - chr2_4:8328903-8328922 Msa0313060:three_prime_UTR 45.0%
GTTATGTTGTGTACCGAGTG+AGG - chr2_4:8329286-8329305 Msa0313060:CDS 45.0%
CTTCCCGTATACAATACCCT+TGG + chr2_4:8329343-8329362 None:intergenic 45.0%
TGAGTAACTCCCTGGTTAGT+GGG + chr2_4:8329366-8329385 None:intergenic 45.0%
TTGAGTAACTCCCTGGTTAG+TGG + chr2_4:8329367-8329386 None:intergenic 45.0%
CAATTCCTACTGGGTCAATG+AGG - chr2_4:8329461-8329480 Msa0313060:CDS 45.0%
AGAATCCTCATTGACCCAGT+AGG + chr2_4:8329469-8329488 None:intergenic 45.0%
CAATCCTGTCCACAAGCATA+GGG - chr2_4:8329569-8329588 Msa0313060:CDS 45.0%
AACAGAGGTTTGAGTGGCAA+AGG - chr2_4:8329624-8329643 Msa0313060:CDS 45.0%
ACAGAGGTTTGAGTGGCAAA+GGG - chr2_4:8329625-8329644 Msa0313060:CDS 45.0%
! ACGGTATCACCCACTGTTTT+TGG - chr2_4:8329977-8329996 Msa0313060:CDS 45.0%
!! CGGTATCACCCACTGTTTTT+GGG - chr2_4:8329978-8329997 Msa0313060:CDS 45.0%
CAGTAACACCTGCTCTCATT+TGG - chr2_4:8330037-8330056 Msa0313060:CDS 45.0%
TTTGACAGCCAAATGAGAGC+AGG + chr2_4:8330048-8330067 None:intergenic 45.0%
AGGTTCTTATCTCTGGTGTC+TGG - chr2_4:8330163-8330182 Msa0313060:intron 45.0%
CGTGAGACAAACCGAGAAAA+TGG - chr2_4:8328764-8328783 Msa0313060:three_prime_UTR 45.0%
GAAACAGCAGCTGCAATAGA+TGG + chr2_4:8328798-8328817 None:intergenic 45.0%
! GTTATGGCGGAAGAAGCAAT+CGG - chr2_4:8328903-8328922 Msa0313060:three_prime_UTR 45.0%
GTTATGTTGTGTACCGAGTG+AGG - chr2_4:8329286-8329305 Msa0313060:CDS 45.0%
CTTCCCGTATACAATACCCT+TGG + chr2_4:8329343-8329362 None:intergenic 45.0%
TGAGTAACTCCCTGGTTAGT+GGG + chr2_4:8329366-8329385 None:intergenic 45.0%
TTGAGTAACTCCCTGGTTAG+TGG + chr2_4:8329367-8329386 None:intergenic 45.0%
CAATTCCTACTGGGTCAATG+AGG - chr2_4:8329461-8329480 Msa0313060:CDS 45.0%
AGAATCCTCATTGACCCAGT+AGG + chr2_4:8329469-8329488 None:intergenic 45.0%
CAATCCTGTCCACAAGCATA+GGG - chr2_4:8329569-8329588 Msa0313060:CDS 45.0%
AACAGAGGTTTGAGTGGCAA+AGG - chr2_4:8329624-8329643 Msa0313060:CDS 45.0%
ACAGAGGTTTGAGTGGCAAA+GGG - chr2_4:8329625-8329644 Msa0313060:CDS 45.0%
! ACGGTATCACCCACTGTTTT+TGG - chr2_4:8329977-8329996 Msa0313060:CDS 45.0%
!! CGGTATCACCCACTGTTTTT+GGG - chr2_4:8329978-8329997 Msa0313060:CDS 45.0%
CAGTAACACCTGCTCTCATT+TGG - chr2_4:8330037-8330056 Msa0313060:CDS 45.0%
TTTGACAGCCAAATGAGAGC+AGG + chr2_4:8330048-8330067 None:intergenic 45.0%
AGGTTCTTATCTCTGGTGTC+TGG - chr2_4:8330163-8330182 Msa0313060:intron 45.0%
! TTTCTCGGTTTGTCTCACGC+TGG + chr2_4:8328763-8328782 None:intergenic 50.0%
TGAGATTCATGCAGCGTGTG+AGG - chr2_4:8328932-8328951 Msa0313060:three_prime_UTR 50.0%
!! GCTTGGCCTTGTAACCCAAA+CGG + chr2_4:8329026-8329045 None:intergenic 50.0%
! TTTGGGTTACAAGGCCAAGC+AGG - chr2_4:8329026-8329045 Msa0313060:three_prime_UTR 50.0%
TACGTAGAGGTGGGAGAAAG+AGG - chr2_4:8329310-8329329 Msa0313060:CDS 50.0%
! AGAAAGAGGCCGGTTTCCAA+GGG - chr2_4:8329324-8329343 Msa0313060:CDS 50.0%
GAGTAAGAGATCTGTTGCCG+AGG - chr2_4:8329401-8329420 Msa0313060:CDS 50.0%
CCTATGCTTGTGGACAGGAT+TGG + chr2_4:8329571-8329590 None:intergenic 50.0%
CCAATCCTGTCCACAAGCAT+AGG - chr2_4:8329568-8329587 Msa0313060:CDS 50.0%
AGTTCCCTATGCTTGTGGAC+AGG + chr2_4:8329576-8329595 None:intergenic 50.0%
CACGAAGTTCCCTATGCTTG+TGG + chr2_4:8329581-8329600 None:intergenic 50.0%
CACAAGCATAGGGAACTTCG+TGG - chr2_4:8329579-8329598 Msa0313060:CDS 50.0%
! TTTCTCGGTTTGTCTCACGC+TGG + chr2_4:8328763-8328782 None:intergenic 50.0%
TGAGATTCATGCAGCGTGTG+AGG - chr2_4:8328932-8328951 Msa0313060:three_prime_UTR 50.0%
!! GCTTGGCCTTGTAACCCAAA+CGG + chr2_4:8329026-8329045 None:intergenic 50.0%
! TTTGGGTTACAAGGCCAAGC+AGG - chr2_4:8329026-8329045 Msa0313060:three_prime_UTR 50.0%
TACGTAGAGGTGGGAGAAAG+AGG - chr2_4:8329310-8329329 Msa0313060:CDS 50.0%
! AGAAAGAGGCCGGTTTCCAA+GGG - chr2_4:8329324-8329343 Msa0313060:CDS 50.0%
GAGTAAGAGATCTGTTGCCG+AGG - chr2_4:8329401-8329420 Msa0313060:CDS 50.0%
CCTATGCTTGTGGACAGGAT+TGG + chr2_4:8329571-8329590 None:intergenic 50.0%
CCAATCCTGTCCACAAGCAT+AGG - chr2_4:8329568-8329587 Msa0313060:CDS 50.0%
AGTTCCCTATGCTTGTGGAC+AGG + chr2_4:8329576-8329595 None:intergenic 50.0%
CACGAAGTTCCCTATGCTTG+TGG + chr2_4:8329581-8329600 None:intergenic 50.0%
CACAAGCATAGGGAACTTCG+TGG - chr2_4:8329579-8329598 Msa0313060:CDS 50.0%
TCATGCAGCGTGTGAGGTGT+TGG - chr2_4:8328938-8328957 Msa0313060:three_prime_UTR 55.0%
! CATGCAGCGTGTGAGGTGTT+GGG - chr2_4:8328939-8328958 Msa0313060:three_prime_UTR 55.0%
GGGTCTGGTGAGACGAACAA+TGG + chr2_4:8328983-8329002 None:intergenic 55.0%
TTTGTCAGGACGAGTGGGTC+TGG + chr2_4:8328998-8329017 None:intergenic 55.0%
! CGAGCTTTGTCAGGACGAGT+GGG + chr2_4:8329003-8329022 None:intergenic 55.0%
TCCTGACAAAGCTCGCCGTT+TGG - chr2_4:8329008-8329027 Msa0313060:three_prime_UTR 55.0%
CCTGACAAAGCTCGCCGTTT+GGG - chr2_4:8329009-8329028 Msa0313060:three_prime_UTR 55.0%
! AGCTCGCCGTTTGGGTTACA+AGG - chr2_4:8329017-8329036 Msa0313060:three_prime_UTR 55.0%
! TACCGAGTGAGGGTACGTAG+AGG - chr2_4:8329297-8329316 Msa0313060:CDS 55.0%
CACCTCTACGTACCCTCACT+CGG + chr2_4:8329302-8329321 None:intergenic 55.0%
! GAGTGAGGGTACGTAGAGGT+GGG - chr2_4:8329301-8329320 Msa0313060:CDS 55.0%
TAGAGGTGGGAGAAAGAGGC+CGG - chr2_4:8329314-8329333 Msa0313060:CDS 55.0%
! GAGAAAGAGGCCGGTTTCCA+AGG - chr2_4:8329323-8329342 Msa0313060:CDS 55.0%
ATACGGGAAGCCCACTAACC+AGG - chr2_4:8329353-8329372 Msa0313060:CDS 55.0%
TACGGGAAGCCCACTAACCA+GGG - chr2_4:8329354-8329373 Msa0313060:CDS 55.0%
! GAGGAAGCTTGGTGGCCTTA+GGG - chr2_4:8329434-8329453 Msa0313060:CDS 55.0%
CTTCGTGGTCTCACTTCTGC+TGG - chr2_4:8329594-8329613 Msa0313060:CDS 55.0%
AGTTTGCCCTGCGAGATGGA+CGG + chr2_4:8329668-8329687 None:intergenic 55.0%
TTCCAGTTTGCCCTGCGAGA+TGG + chr2_4:8329672-8329691 None:intergenic 55.0%
TCATGCAGCGTGTGAGGTGT+TGG - chr2_4:8328938-8328957 Msa0313060:three_prime_UTR 55.0%
! CATGCAGCGTGTGAGGTGTT+GGG - chr2_4:8328939-8328958 Msa0313060:three_prime_UTR 55.0%
GGGTCTGGTGAGACGAACAA+TGG + chr2_4:8328983-8329002 None:intergenic 55.0%
TTTGTCAGGACGAGTGGGTC+TGG + chr2_4:8328998-8329017 None:intergenic 55.0%
! CGAGCTTTGTCAGGACGAGT+GGG + chr2_4:8329003-8329022 None:intergenic 55.0%
TCCTGACAAAGCTCGCCGTT+TGG - chr2_4:8329008-8329027 Msa0313060:three_prime_UTR 55.0%
CCTGACAAAGCTCGCCGTTT+GGG - chr2_4:8329009-8329028 Msa0313060:three_prime_UTR 55.0%
! AGCTCGCCGTTTGGGTTACA+AGG - chr2_4:8329017-8329036 Msa0313060:three_prime_UTR 55.0%
! TACCGAGTGAGGGTACGTAG+AGG - chr2_4:8329297-8329316 Msa0313060:CDS 55.0%
CACCTCTACGTACCCTCACT+CGG + chr2_4:8329302-8329321 None:intergenic 55.0%
! GAGTGAGGGTACGTAGAGGT+GGG - chr2_4:8329301-8329320 Msa0313060:CDS 55.0%
TAGAGGTGGGAGAAAGAGGC+CGG - chr2_4:8329314-8329333 Msa0313060:CDS 55.0%
! GAGAAAGAGGCCGGTTTCCA+AGG - chr2_4:8329323-8329342 Msa0313060:CDS 55.0%
ATACGGGAAGCCCACTAACC+AGG - chr2_4:8329353-8329372 Msa0313060:CDS 55.0%
TACGGGAAGCCCACTAACCA+GGG - chr2_4:8329354-8329373 Msa0313060:CDS 55.0%
! GAGGAAGCTTGGTGGCCTTA+GGG - chr2_4:8329434-8329453 Msa0313060:CDS 55.0%
CTTCGTGGTCTCACTTCTGC+TGG - chr2_4:8329594-8329613 Msa0313060:CDS 55.0%
AGTTTGCCCTGCGAGATGGA+CGG + chr2_4:8329668-8329687 None:intergenic 55.0%
TTCCAGTTTGCCCTGCGAGA+TGG + chr2_4:8329672-8329691 None:intergenic 55.0%
! TCGGTTTGTCTCACGCTGGC+AGG + chr2_4:8328759-8328778 None:intergenic 60.0%
! GCGAGCTTTGTCAGGACGAG+TGG + chr2_4:8329004-8329023 None:intergenic 60.0%
! CCCAAACGGCGAGCTTTGTC+AGG + chr2_4:8329012-8329031 None:intergenic 60.0%
! CGAGTGAGGGTACGTAGAGG+TGG - chr2_4:8329300-8329319 Msa0313060:CDS 60.0%
! GGAGGAAGCTTGGTGGCCTT+AGG - chr2_4:8329433-8329452 Msa0313060:CDS 60.0%
! TGCGAGATGGACGGGCTTTG+TGG + chr2_4:8329659-8329678 None:intergenic 60.0%
ACAAAGCCCGTCCATCTCGC+AGG - chr2_4:8329658-8329677 Msa0313060:CDS 60.0%
CAAAGCCCGTCCATCTCGCA+GGG - chr2_4:8329659-8329678 Msa0313060:CDS 60.0%
GTTTGCCCTGCGAGATGGAC+GGG + chr2_4:8329667-8329686 None:intergenic 60.0%
GTCCATCTCGCAGGGCAAAC+TGG - chr2_4:8329667-8329686 Msa0313060:CDS 60.0%
! TCGGTTTGTCTCACGCTGGC+AGG + chr2_4:8328759-8328778 None:intergenic 60.0%
! GCGAGCTTTGTCAGGACGAG+TGG + chr2_4:8329004-8329023 None:intergenic 60.0%
! CCCAAACGGCGAGCTTTGTC+AGG + chr2_4:8329012-8329031 None:intergenic 60.0%
! CGAGTGAGGGTACGTAGAGG+TGG - chr2_4:8329300-8329319 Msa0313060:CDS 60.0%
! GGAGGAAGCTTGGTGGCCTT+AGG - chr2_4:8329433-8329452 Msa0313060:CDS 60.0%
! TGCGAGATGGACGGGCTTTG+TGG + chr2_4:8329659-8329678 None:intergenic 60.0%
ACAAAGCCCGTCCATCTCGC+AGG - chr2_4:8329658-8329677 Msa0313060:CDS 60.0%
CAAAGCCCGTCCATCTCGCA+GGG - chr2_4:8329659-8329678 Msa0313060:CDS 60.0%
GTTTGCCCTGCGAGATGGAC+GGG + chr2_4:8329667-8329686 None:intergenic 60.0%
GTCCATCTCGCAGGGCAAAC+TGG - chr2_4:8329667-8329686 Msa0313060:CDS 60.0%
! TCTGTTGCCGAGGAGCGTGC+TGG - chr2_4:8329411-8329430 Msa0313060:CDS 65.0%
! CTGTTGCCGAGGAGCGTGCT+GGG - chr2_4:8329412-8329431 Msa0313060:CDS 65.0%
CTTCCTCCCAGCACGCTCCT+CGG + chr2_4:8329421-8329440 None:intergenic 65.0%
GAGCGTGCTGGGAGGAAGCT+TGG - chr2_4:8329423-8329442 Msa0313060:CDS 65.0%
CGTGCTGGGAGGAAGCTTGG+TGG - chr2_4:8329426-8329445 Msa0313060:CDS 65.0%
! TCTGTTGCCGAGGAGCGTGC+TGG - chr2_4:8329411-8329430 Msa0313060:CDS 65.0%
! CTGTTGCCGAGGAGCGTGCT+GGG - chr2_4:8329412-8329431 Msa0313060:CDS 65.0%
CTTCCTCCCAGCACGCTCCT+CGG + chr2_4:8329421-8329440 None:intergenic 65.0%
GAGCGTGCTGGGAGGAAGCT+TGG - chr2_4:8329423-8329442 Msa0313060:CDS 65.0%
CGTGCTGGGAGGAAGCTTGG+TGG - chr2_4:8329426-8329445 Msa0313060:CDS 65.0%
! TTGCCGAGGAGCGTGCTGGG+AGG - chr2_4:8329415-8329434 Msa0313060:CDS 70.0%
! TTGCCGAGGAGCGTGCTGGG+AGG - chr2_4:8329415-8329434 Msa0313060:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 8328748 8330241 8328748 ID=Msa0313060;Name=Msa0313060
chr2_4 mRNA 8328748 8330241 8328748 ID=Msa0313060-mRNA-1;Parent=Msa0313060;Name=Msa0313060-mRNA-1;_AED=0.06;_eAED=0.06;_QI=35|1|1|1|1|1|3|513|204
chr2_4 exon 8328748 8329704 8328748 ID=Msa0313060-mRNA-1:exon:3228;Parent=Msa0313060-mRNA-1
chr2_4 exon 8329942 8330108 8329942 ID=Msa0313060-mRNA-1:exon:3227;Parent=Msa0313060-mRNA-1
chr2_4 exon 8330203 8330241 8330203 ID=Msa0313060-mRNA-1:exon:3226;Parent=Msa0313060-mRNA-1
chr2_4 five_prime_UTR 8330207 8330241 8330207 ID=Msa0313060-mRNA-1:five_prime_utr;Parent=Msa0313060-mRNA-1
chr2_4 CDS 8330203 8330206 8330203 ID=Msa0313060-mRNA-1:cds;Parent=Msa0313060-mRNA-1
chr2_4 CDS 8329942 8330108 8329942 ID=Msa0313060-mRNA-1:cds;Parent=Msa0313060-mRNA-1
chr2_4 CDS 8329261 8329704 8329261 ID=Msa0313060-mRNA-1:cds;Parent=Msa0313060-mRNA-1
chr2_4 three_prime_UTR 8328748 8329260 8328748 ID=Msa0313060-mRNA-1:three_prime_utr;Parent=Msa0313060-mRNA-1
Gene Sequence

>Msa0313060

ATGGGTGCATACAAGTATGTTTCTGAGTTATGGCGGAAGAAGCAATCGGATGTGATGAGATTCATGCAGCGTGTGAGGTGTTGGGAGTATCGTCAACAATCTTCCATTGTTCGTCTCACCAGACCCACTCGTCCTGACAAAGCTCGCCGTTTGGGTTACAAGGCCAAGCAGGGTTATGTTGTGTACCGAGTGAGGGTACGTAGAGGTGGGAGAAAGAGGCCGGTTTCCAAGGGTATTGTATACGGGAAGCCCACTAACCAGGGAGTTACTCAACTTAAGTTTCAAAGGAGTAAGAGATCTGTTGCCGAGGAGCGTGCTGGGAGGAAGCTTGGTGGCCTTAGGGTTCTCAATTCCTACTGGGTCAATGAGGATTCTACCTTCAAGTATTTTGAGGTCATTTTGGTTGATGTTGCTCATAGTGCTATAAGAAATGATCCAAGAATCAACTGGCTTACCAATCCTGTCCACAAGCATAGGGAACTTCGTGGTCTCACTTCTGCTGGTAAAGAAAACAGAGGTTTGAGTGGCAAAGGGCATCGTTACCACAAAGCCCGTCCATCTCGCAGGGCAAACTGGAAGAGAAACAACACTCTGTCTCTCCGTCGTTATCGTTGA

Protein sequence

>Msa0313060

MGAYKYVSELWRKKQSDVMRFMQRVRCWEYRQQSSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVSKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTFKYFEVILVDVAHSAIRNDPRINWLTNPVHKHRELRGLTSAGKENRGLSGKGHRYHKARPSRRANWKRNNTLSLRRYR*