AlfalfaGEDB | Msa1337900

M. sativa cultivar zhongmu-4 / Msa1337900

KEGG: K09285
GO: -
PFAM: PF00847.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1337900	RHN64847.1	98.596	356	4	1	1	355	1	356	0.0	728

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1337900	sp\|Q94AN4\|AP2L1_ARATH	54.416	351	122	6	7	346	16	339	7.39e-106	317

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1337900	A0A396IPM2	98.596	356	4	1	1	355	1	356	0.0	728

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TFs/TRs:

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Gene ID	Type	Classification
Msa1337900	TF	AP2/ERF-AP2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0081520	Msa1337900	0.812081	5.071420e-51	-8.615850e-47
Msa0092670	Msa1337900	-0.800708	1.269682e-48	-8.615850e-47
Msa0173890	Msa1337900	0.801434	9.020558e-49	-8.615850e-47
Msa0513160	Msa1337900	0.803635	3.172566e-49	-8.615850e-47
Msa0582480	Msa1337900	0.808093	3.669319e-50	-8.615850e-47
Msa0586220	Msa1337900	0.804442	2.156088e-49	-8.615850e-47
Msa0626450	Msa1337900	0.807634	4.592274e-50	-8.615850e-47
Msa0626490	Msa1337900	0.810848	9.399239e-51	-8.615850e-47
Msa0638480	Msa1337900	0.800849	1.188175e-48	-8.615850e-47
Msa0664600	Msa1337900	0.806000	1.017261e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1337900	MtrunA17_Chr4g0073521	98.596	356	4	1	1	355	1	356	0.0	728
Msa1337900	MtrunA17_Chr4g0002011	61.656	326	85	7	38	350	28	326	9.33e-128	369
Msa1337900	MtrunA17_Chr7g0216601	70.833	192	52	2	41	229	60	250	4.00e-98	296
Msa1337900	MtrunA17_Chr8g0355191	48.949	333	151	6	9	334	23	343	6.96e-98	296
Msa1337900	MtrunA17_Chr8g0362541	52.038	319	115	10	45	335	68	376	7.42e-94	286
Msa1337900	MtrunA17_Chr6g0452911	48.534	307	121	6	50	325	65	365	1.35e-93	284
Msa1337900	MtrunA17_Chr8g0355181	76.437	174	41	0	45	218	55	228	3.16e-92	281
Msa1337900	MtrunA17_Chr4g0072291	71.598	169	45	1	45	210	158	326	3.38e-87	272
Msa1337900	MtrunA17_Chr8g0343851	69.832	179	51	1	35	210	234	412	1.13e-85	270
Msa1337900	MtrunA17_Chr2g0328971	70.482	166	49	0	45	210	166	331	9.09e-85	266

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1337900	AT1G16060.1	54.416	351	122	6	7	346	16	339	7.52e-107	317
Msa1337900	AT1G79700.2	51.791	363	109	8	1	350	1	310	2.54e-99	296
Msa1337900	AT3G54320.3	74.242	198	39	3	30	215	37	234	1.56e-92	283
Msa1337900	AT3G54320.1	74.242	198	39	3	30	215	37	234	1.85e-92	283
Msa1337900	AT1G79700.1	49.036	363	109	9	1	350	1	300	9.98e-88	266
Msa1337900	AT5G57390.2	71.598	169	45	1	45	210	81	249	1.08e-86	268
Msa1337900	AT5G57390.1	71.598	169	45	1	45	210	199	367	7.37e-86	270
Msa1337900	AT1G51190.1	59.906	212	76	3	2	210	149	354	1.90e-84	266
Msa1337900	AT5G17430.2	66.667	189	55	2	25	210	129	312	1.62e-83	263
Msa1337900	AT5G17430.1	66.667	189	55	2	25	210	191	374	2.90e-83	264

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Find 100 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGATGGGCTAAGGAAT+GGG	0.338837	tig0001530:+34841	None:intergenic
AAATTTCAATGATACCATGT+TGG	0.588011	tig0001530:-31513	Msa1337900:CDS
AAGCTGTAGCTGCTTCTTCT+TGG	0.308304	tig0001530:+31954	None:intergenic
AAGGGATGGGCTAAGGAATG+GGG	0.543605	tig0001530:+34842	None:intergenic
AAGTAACACTGTCACCACCA+AGG	0.725020	tig0001530:-34604	Msa1337900:CDS
AAGTACGTTTGAATGTCATC+AGG	0.487256	tig0001530:+31545	None:intergenic
AATGAGTCTCAGAACAAGAA+AGG	0.503226	tig0001530:-34327	Msa1337900:CDS
AATGGAGAGTCAATCAAGGG+AGG	0.710747	tig0001530:-33851	Msa1337900:CDS
AATGTCACAAAGATTAATAT+TGG	0.380390	tig0001530:+31817	None:intergenic
AATTACCGGAAAATTAATAA+TGG	0.409895	tig0001530:+33985	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAGAAGAATTTAAAGGGAT+GGG	+	tig0001530:31422-31441	None:intergenic	30.0%
TGAAGAAGAATTTAAAGGGA+TGG	+	tig0001530:31423-31442	None:intergenic	30.0%
TGGGTGAAGAAGAATTTAAA+GGG	+	tig0001530:31427-31446	None:intergenic	30.0%
TTGGGTGAAGAAGAATTTAA+AGG	+	tig0001530:31428-31447	None:intergenic	30.0%
CAGATAAACATATACAAGAG+AGG	+	tig0001530:31780-31799	None:intergenic	30.0%
GAGCTTGATGTTAAAATTTC+AGG	-	tig0001530:32169-32188	Msa1337900:intron	30.0%
AGTATATTGGATCCTTAAGA+AGG	-	tig0001530:32420-32439	Msa1337900:intron	30.0%
GATTAATACTCACCTTCTTA+AGG	+	tig0001530:32435-32454	None:intergenic	30.0%
AAAAATTGCAGAAAAAGCAG+TGG	-	tig0001530:32527-32546	Msa1337900:intron	30.0%
AAAATTGCAGAAAAAGCAGT+GGG	-	tig0001530:32528-32547	Msa1337900:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0001530	gene	31209	35061	31209	ID=Msa1337900;Name=Msa1337900
tig0001530	mRNA	31209	35061	31209	ID=Msa1337900-mRNA-1;Parent=Msa1337900;Name=Msa1337900-mRNA-1;_AED=0.11;_eAED=0.11;_QI=367\|0.83\|1\|1\|1\|1\|7\|242\|355
tig0001530	exon	31209	31980	31209	ID=Msa1337900-mRNA-1:exon:1445;Parent=Msa1337900-mRNA-1
tig0001530	exon	33435	33511	33435	ID=Msa1337900-mRNA-1:exon:1444;Parent=Msa1337900-mRNA-1
tig0001530	exon	33682	33732	33682	ID=Msa1337900-mRNA-1:exon:1443;Parent=Msa1337900-mRNA-1
tig0001530	exon	33829	33902	33829	ID=Msa1337900-mRNA-1:exon:1442;Parent=Msa1337900-mRNA-1
tig0001530	exon	33991	34079	33991	ID=Msa1337900-mRNA-1:exon:1441;Parent=Msa1337900-mRNA-1
tig0001530	exon	34319	34401	34319	ID=Msa1337900-mRNA-1:exon:1440;Parent=Msa1337900-mRNA-1
tig0001530	exon	34531	35061	34531	ID=Msa1337900-mRNA-1:exon:1439;Parent=Msa1337900-mRNA-1
tig0001530	five_prime_UTR	34695	35061	34695	ID=Msa1337900-mRNA-1:five_prime_utr;Parent=Msa1337900-mRNA-1
tig0001530	CDS	34531	34694	34531	ID=Msa1337900-mRNA-1:cds;Parent=Msa1337900-mRNA-1
tig0001530	CDS	34319	34401	34319	ID=Msa1337900-mRNA-1:cds;Parent=Msa1337900-mRNA-1
tig0001530	CDS	33991	34079	33991	ID=Msa1337900-mRNA-1:cds;Parent=Msa1337900-mRNA-1
tig0001530	CDS	33829	33902	33829	ID=Msa1337900-mRNA-1:cds;Parent=Msa1337900-mRNA-1
tig0001530	CDS	33682	33732	33682	ID=Msa1337900-mRNA-1:cds;Parent=Msa1337900-mRNA-1
tig0001530	CDS	33435	33511	33435	ID=Msa1337900-mRNA-1:cds;Parent=Msa1337900-mRNA-1
tig0001530	CDS	31451	31980	31451	ID=Msa1337900-mRNA-1:cds;Parent=Msa1337900-mRNA-1
tig0001530	three_prime_UTR	31209	31450	31209	ID=Msa1337900-mRNA-1:three_prime_utr;Parent=Msa1337900-mRNA-1

Gene Sequence

>Msa1337900

ATGGCGAAAAAATCGCAGAAGCAAACAGAGAAAGATAATGCAAGCAATGATAACAATAATCTGAATGCAAGTAACACTGTCACCACCAAGGCAAAACGAACGAGGAAAAGTGTCCCTAGAACTTCTCCACCTCAACGCAGCTCAATATACAGAGGAGTTACTAGGCACCGTTGGACAGGTCGATATGAAGCTCATTTGTGGGACAAGAATTGTTGGAATGAGTCTCAGAACAAGAAAGGGAGACAAGGTGCTTATGATAATGAGGAGACGGCAGCACATGCTTATGATCTAGCAGCATTGAAATATTGGGGTCAAGATACCATTATTAATTTTCCGCTATCAAACTATCAAAAAGAACTAATTGAAATGGAGAGTCAATCAAGGGAGGAGTATATTGGATCCTTAAGAAGAAAAAGCAGTGGGTTTTCACGGGGAGTATCTAAATACAGAGGTGTAGCAAGACATCATCATAACGGAAGGTGGGAGGCACGGATTGGCAAAGTTTTTGGCAATAAGTATCTTTATCTCGGAACATATGCTACCCAAGAAGAAGCAGCTACAGCTTATGACATGGCAGCTATTGAATACCGTGGACTTAATGCTGTTACCAATTTCGATCTCAGCCGTTATATTAAGTGGCTTAAACCCAACAATAATAGCAACGATGACAATAACAAGTCCAATATTAATCTTTGTGACATTAACTCTAACAGTAGTGCCAACGACTCAAACTCTAATGAAGAACTGGAATTTAGCCTCGTGGACAATGAAATATCACTCAATAATTCTATTGACGAAGCTACATTGGTTCAACCTCGACCAACTAGTGCCACATCAGCCCTAGAGCTTTTGCTTCAGTCATCTAAGTTTAAGGAAATGGTGGAAATGGCATCAATGACTTCCAATGTGTCAACAACGTTGGAGTCTGATCAGTTGTCACAATGTGCATTTCCTGATGACATTCAAACGTACTTTGAATATGAAAATTTCAATGATACCATGTTGGAAGACCTCAACTCCATTATGCCTACGTTTCATTATGACTTTGAGGGTGCTGAGGTTTTATAG

Protein sequence

>Msa1337900

MAKKSQKQTEKDNASNDNNNLNASNTVTTKAKRTRKSVPRTSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDNEETAAHAYDLAALKYWGQDTIINFPLSNYQKELIEMESQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNNNSNDDNNKSNINLCDINSNSSANDSNSNEELEFSLVDNEISLNNSIDEATLVQPRPTSATSALELLLQSSKFKEMVEMASMTSNVSTTLESDQLSQCAFPDDIQTYFEYENFNDTMLEDLNSIMPTFHYDFEGAEVL*