Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337900 | RHN64847.1 | 98.596 | 356 | 4 | 1 | 1 | 355 | 1 | 356 | 0.0 | 728 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337900 | sp|Q94AN4|AP2L1_ARATH | 54.416 | 351 | 122 | 6 | 7 | 346 | 16 | 339 | 7.39e-106 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337900 | A0A396IPM2 | 98.596 | 356 | 4 | 1 | 1 | 355 | 1 | 356 | 0.0 | 728 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1337900 | TF | AP2/ERF-AP2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0081520 | Msa1337900 | 0.812081 | 5.071420e-51 | -8.615850e-47 |
| Msa0092670 | Msa1337900 | -0.800708 | 1.269682e-48 | -8.615850e-47 |
| Msa0626450 | Msa1337900 | 0.807634 | 4.592274e-50 | -8.615850e-47 |
| Msa0626490 | Msa1337900 | 0.810848 | 9.399239e-51 | -8.615850e-47 |
| Msa0638480 | Msa1337900 | 0.800849 | 1.188175e-48 | -8.615850e-47 |
| Msa0664600 | Msa1337900 | 0.806000 | 1.017261e-49 | -8.615850e-47 |
| Msa0683570 | Msa1337900 | 0.806989 | 6.290973e-50 | -8.615850e-47 |
| Msa0173890 | Msa1337900 | 0.801434 | 9.020558e-49 | -8.615850e-47 |
| Msa1264710 | Msa1337900 | 0.884170 | 2.409752e-71 | -8.615850e-47 |
| Msa1318170 | Msa1337900 | 0.808371 | 3.201278e-50 | -8.615850e-47 |
| Msa1337900 | Msa1388600 | 0.806034 | 1.000478e-49 | -8.615850e-47 |
| Msa1337900 | Msa1445190 | 0.801148 | 1.032155e-48 | -8.615850e-47 |
| Msa1217210 | Msa1337900 | 0.800867 | 1.178137e-48 | -8.615850e-47 |
| Msa1222350 | Msa1337900 | 0.908991 | 9.327135e-82 | -8.615850e-47 |
| Msa0513160 | Msa1337900 | 0.803635 | 3.172566e-49 | -8.615850e-47 |
| Msa0582480 | Msa1337900 | 0.808093 | 3.669319e-50 | -8.615850e-47 |
| Msa0586220 | Msa1337900 | 0.804442 | 2.156088e-49 | -8.615850e-47 |
| Msa0881090 | Msa1337900 | 0.916617 | 1.436635e-85 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337900 | MtrunA17_Chr4g0073521 | 98.596 | 356 | 4 | 1 | 1 | 355 | 1 | 356 | 0.0 | 728 |
| Msa1337900 | MtrunA17_Chr4g0002011 | 61.656 | 326 | 85 | 7 | 38 | 350 | 28 | 326 | 9.33e-128 | 369 |
| Msa1337900 | MtrunA17_Chr7g0216601 | 70.833 | 192 | 52 | 2 | 41 | 229 | 60 | 250 | 4.00e-98 | 296 |
| Msa1337900 | MtrunA17_Chr8g0355191 | 48.949 | 333 | 151 | 6 | 9 | 334 | 23 | 343 | 6.96e-98 | 296 |
| Msa1337900 | MtrunA17_Chr8g0362541 | 52.038 | 319 | 115 | 10 | 45 | 335 | 68 | 376 | 7.42e-94 | 286 |
| Msa1337900 | MtrunA17_Chr6g0452911 | 48.534 | 307 | 121 | 6 | 50 | 325 | 65 | 365 | 1.35e-93 | 284 |
| Msa1337900 | MtrunA17_Chr8g0355181 | 76.437 | 174 | 41 | 0 | 45 | 218 | 55 | 228 | 3.16e-92 | 281 |
| Msa1337900 | MtrunA17_Chr4g0072291 | 71.598 | 169 | 45 | 1 | 45 | 210 | 158 | 326 | 3.38e-87 | 272 |
| Msa1337900 | MtrunA17_Chr8g0343851 | 69.832 | 179 | 51 | 1 | 35 | 210 | 234 | 412 | 1.13e-85 | 270 |
| Msa1337900 | MtrunA17_Chr2g0328971 | 70.482 | 166 | 49 | 0 | 45 | 210 | 166 | 331 | 9.09e-85 | 266 |
| Msa1337900 | MtrunA17_Chr7g0249621 | 65.803 | 193 | 61 | 2 | 21 | 210 | 236 | 426 | 1.88e-84 | 269 |
| Msa1337900 | MtrunA17_Chr7g0249621 | 40.000 | 85 | 43 | 1 | 136 | 212 | 250 | 334 | 3.49e-11 | 64.7 |
| Msa1337900 | MtrunA17_Chr4g0032631 | 64.249 | 193 | 60 | 3 | 22 | 210 | 143 | 330 | 3.65e-84 | 265 |
| Msa1337900 | MtrunA17_Chr3g0135161 | 71.084 | 166 | 48 | 0 | 45 | 210 | 309 | 474 | 6.82e-83 | 265 |
| Msa1337900 | MtrunA17_Chr4g0054351 | 60.829 | 217 | 72 | 3 | 45 | 248 | 309 | 525 | 8.25e-83 | 264 |
| Msa1337900 | MtrunA17_Chr1g0152161 | 62.255 | 204 | 65 | 2 | 19 | 210 | 273 | 476 | 9.57e-83 | 264 |
| Msa1337900 | MtrunA17_Chr5g0400871 | 69.822 | 169 | 48 | 1 | 45 | 210 | 248 | 416 | 1.36e-81 | 258 |
| Msa1337900 | MtrunA17_Chr2g0305821 | 82.166 | 157 | 25 | 2 | 1 | 155 | 1 | 156 | 1.88e-75 | 230 |
| Msa1337900 | MtrunA17_Chr5g0412151 | 69.822 | 169 | 48 | 1 | 45 | 210 | 223 | 391 | 1.94e-71 | 231 |
| Msa1337900 | MtrunA17_Chr5g0412151 | 41.463 | 82 | 40 | 1 | 142 | 215 | 221 | 302 | 9.13e-11 | 63.2 |
| Msa1337900 | MtrunA17_Chr2g0305831 | 58.049 | 205 | 65 | 7 | 152 | 343 | 1 | 197 | 6.42e-66 | 207 |
| Msa1337900 | MtrunA17_Chr8g0367311 | 67.188 | 128 | 42 | 0 | 83 | 210 | 22 | 149 | 1.19e-57 | 187 |
| Msa1337900 | MtrunA17_Chr7g0257361 | 48.472 | 229 | 99 | 5 | 4 | 223 | 10 | 228 | 6.93e-53 | 180 |
| Msa1337900 | MtrunA17_Chr4g0053181 | 46.970 | 198 | 94 | 4 | 50 | 247 | 177 | 363 | 3.87e-40 | 148 |
| Msa1337900 | MtrunA17_Chr7g0263581 | 46.703 | 182 | 87 | 4 | 50 | 231 | 140 | 311 | 3.18e-39 | 145 |
| Msa1337900 | MtrunA17_Chr5g0401891 | 47.802 | 182 | 83 | 4 | 50 | 231 | 153 | 322 | 1.87e-38 | 143 |
| Msa1337900 | MtrunA17_Chr4g0030191 | 49.689 | 161 | 73 | 3 | 50 | 210 | 132 | 284 | 1.66e-37 | 140 |
| Msa1337900 | MtrunA17_Chr2g0325911 | 42.857 | 182 | 81 | 4 | 50 | 231 | 135 | 293 | 1.03e-30 | 121 |
| Msa1337900 | MtrunA17_Chr3g0126151 | 48.387 | 93 | 47 | 1 | 94 | 186 | 47 | 138 | 1.63e-22 | 92.0 |
| Msa1337900 | MtrunA17_Chr8g0367321 | 61.702 | 47 | 18 | 0 | 36 | 82 | 145 | 191 | 1.15e-14 | 72.0 |
| Msa1337900 | MtrunA17_Chr1g0170761 | 35.393 | 178 | 103 | 6 | 22 | 198 | 112 | 278 | 1.42e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337900 | AT1G16060.1 | 54.416 | 351 | 122 | 6 | 7 | 346 | 16 | 339 | 7.52e-107 | 317 |
| Msa1337900 | AT1G79700.2 | 51.791 | 363 | 109 | 8 | 1 | 350 | 1 | 310 | 2.54e-99 | 296 |
| Msa1337900 | AT3G54320.3 | 74.242 | 198 | 39 | 3 | 30 | 215 | 37 | 234 | 1.56e-92 | 283 |
| Msa1337900 | AT3G54320.1 | 74.242 | 198 | 39 | 3 | 30 | 215 | 37 | 234 | 1.85e-92 | 283 |
| Msa1337900 | AT1G79700.1 | 49.036 | 363 | 109 | 9 | 1 | 350 | 1 | 300 | 9.98e-88 | 266 |
| Msa1337900 | AT5G57390.2 | 71.598 | 169 | 45 | 1 | 45 | 210 | 81 | 249 | 1.08e-86 | 268 |
| Msa1337900 | AT5G57390.1 | 71.598 | 169 | 45 | 1 | 45 | 210 | 199 | 367 | 7.37e-86 | 270 |
| Msa1337900 | AT1G51190.1 | 59.906 | 212 | 76 | 3 | 2 | 210 | 149 | 354 | 1.90e-84 | 266 |
| Msa1337900 | AT5G17430.2 | 66.667 | 189 | 55 | 2 | 25 | 210 | 129 | 312 | 1.62e-83 | 263 |
| Msa1337900 | AT5G17430.1 | 66.667 | 189 | 55 | 2 | 25 | 210 | 191 | 374 | 2.90e-83 | 264 |
| Msa1337900 | AT1G72570.1 | 66.304 | 184 | 56 | 2 | 33 | 210 | 204 | 387 | 3.33e-83 | 259 |
| Msa1337900 | AT3G20840.1 | 67.456 | 169 | 52 | 1 | 45 | 210 | 177 | 345 | 3.06e-81 | 258 |
| Msa1337900 | AT4G37750.1 | 68.047 | 169 | 51 | 1 | 45 | 210 | 279 | 447 | 2.35e-77 | 248 |
| Msa1337900 | AT5G65510.4 | 69.231 | 169 | 49 | 1 | 45 | 210 | 169 | 337 | 1.75e-72 | 232 |
| Msa1337900 | AT5G10510.2 | 69.277 | 166 | 51 | 0 | 45 | 210 | 226 | 391 | 2.26e-72 | 234 |
| Msa1337900 | AT5G65510.2 | 69.231 | 169 | 49 | 1 | 45 | 210 | 227 | 395 | 3.12e-72 | 233 |
| Msa1337900 | AT5G65510.1 | 69.231 | 169 | 49 | 1 | 45 | 210 | 227 | 395 | 3.12e-72 | 233 |
| Msa1337900 | AT5G10510.7 | 68.047 | 169 | 51 | 1 | 45 | 210 | 226 | 394 | 3.47e-70 | 229 |
| Msa1337900 | AT5G10510.5 | 68.047 | 169 | 51 | 1 | 45 | 210 | 226 | 394 | 3.47e-70 | 229 |
| Msa1337900 | AT5G10510.1 | 68.047 | 169 | 51 | 1 | 45 | 210 | 249 | 417 | 6.58e-70 | 229 |
| Msa1337900 | AT5G10510.6 | 68.047 | 169 | 51 | 1 | 45 | 210 | 264 | 432 | 7.01e-70 | 229 |
| Msa1337900 | AT5G10510.4 | 68.047 | 169 | 51 | 1 | 45 | 210 | 264 | 432 | 7.01e-70 | 229 |
| Msa1337900 | AT1G16060.3 | 52.941 | 272 | 93 | 5 | 83 | 346 | 25 | 269 | 2.17e-67 | 214 |
| Msa1337900 | AT1G79700.4 | 50.545 | 275 | 76 | 6 | 83 | 350 | 7 | 228 | 9.03e-66 | 208 |
| Msa1337900 | AT1G79700.3 | 50.545 | 275 | 76 | 6 | 83 | 350 | 13 | 234 | 1.18e-65 | 208 |
| Msa1337900 | AT3G54320.4 | 80.451 | 133 | 26 | 0 | 83 | 215 | 36 | 168 | 1.79e-65 | 211 |
| Msa1337900 | AT3G54320.5 | 80.451 | 133 | 26 | 0 | 83 | 215 | 36 | 168 | 1.79e-65 | 211 |
| Msa1337900 | AT5G10510.3 | 60.317 | 189 | 52 | 1 | 45 | 210 | 264 | 452 | 1.86e-65 | 218 |
| Msa1337900 | AT5G65510.3 | 68.345 | 139 | 41 | 1 | 45 | 180 | 169 | 307 | 4.57e-65 | 209 |
| Msa1337900 | AT1G16060.2 | 50.000 | 232 | 81 | 5 | 123 | 346 | 1 | 205 | 7.20e-53 | 174 |
| Msa1337900 | AT1G16060.4 | 50.000 | 232 | 81 | 5 | 123 | 346 | 1 | 205 | 7.20e-53 | 174 |
| Msa1337900 | AT1G16060.6 | 50.000 | 232 | 81 | 5 | 123 | 346 | 1 | 205 | 7.20e-53 | 174 |
| Msa1337900 | AT1G16060.5 | 50.000 | 232 | 81 | 5 | 123 | 346 | 1 | 205 | 7.20e-53 | 174 |
| Msa1337900 | AT2G41710.1 | 52.083 | 192 | 80 | 3 | 31 | 219 | 52 | 234 | 1.91e-52 | 179 |
| Msa1337900 | AT2G41710.4 | 52.083 | 192 | 80 | 3 | 31 | 219 | 52 | 234 | 2.53e-52 | 180 |
| Msa1337900 | AT2G41710.2 | 50.761 | 197 | 80 | 4 | 31 | 219 | 52 | 239 | 6.88e-50 | 172 |
| Msa1337900 | AT2G41710.3 | 44.053 | 227 | 80 | 4 | 31 | 219 | 52 | 269 | 1.78e-45 | 162 |
| Msa1337900 | AT3G54320.2 | 82.796 | 93 | 16 | 0 | 123 | 215 | 1 | 93 | 1.69e-42 | 149 |
| Msa1337900 | AT2G28550.3 | 46.000 | 200 | 94 | 4 | 50 | 249 | 154 | 339 | 3.31e-40 | 147 |
| Msa1337900 | AT4G36920.1 | 43.721 | 215 | 107 | 5 | 50 | 258 | 132 | 338 | 2.21e-39 | 145 |
| Msa1337900 | AT4G36920.2 | 43.721 | 215 | 107 | 5 | 50 | 258 | 132 | 338 | 2.21e-39 | 145 |
| Msa1337900 | AT5G67180.2 | 45.946 | 185 | 83 | 4 | 35 | 210 | 73 | 249 | 4.19e-38 | 138 |
| Msa1337900 | AT5G67180.3 | 45.946 | 185 | 83 | 4 | 35 | 210 | 73 | 249 | 7.62e-38 | 137 |
| Msa1337900 | AT5G67180.1 | 45.946 | 185 | 83 | 4 | 35 | 210 | 73 | 249 | 2.26e-37 | 137 |
| Msa1337900 | AT2G28550.4 | 48.905 | 137 | 62 | 3 | 50 | 186 | 154 | 282 | 1.33e-31 | 122 |
| Msa1337900 | AT2G28550.1 | 42.500 | 200 | 86 | 5 | 50 | 249 | 154 | 324 | 5.34e-31 | 122 |
| Msa1337900 | AT1G16060.7 | 43.069 | 202 | 80 | 5 | 153 | 346 | 9 | 183 | 5.25e-30 | 114 |
| Msa1337900 | AT5G67180.4 | 43.293 | 164 | 76 | 4 | 35 | 189 | 73 | 228 | 1.35e-28 | 112 |
| Msa1337900 | AT2G28550.2 | 48.780 | 123 | 55 | 3 | 50 | 172 | 154 | 268 | 1.10e-25 | 104 |
| Msa1337900 | AT2G28550.6 | 48.780 | 123 | 55 | 3 | 50 | 172 | 154 | 268 | 1.10e-25 | 104 |
| Msa1337900 | AT2G28550.5 | 41.916 | 167 | 75 | 3 | 83 | 249 | 14 | 158 | 1.26e-23 | 99.4 |
| Msa1337900 | AT5G60120.4 | 37.017 | 181 | 89 | 5 | 23 | 203 | 136 | 291 | 2.30e-21 | 94.7 |
| Msa1337900 | AT5G60120.3 | 37.017 | 181 | 89 | 5 | 23 | 203 | 136 | 291 | 2.30e-21 | 94.7 |
| Msa1337900 | AT5G60120.5 | 37.017 | 181 | 89 | 5 | 23 | 203 | 136 | 291 | 2.30e-21 | 94.7 |
| Msa1337900 | AT5G60120.6 | 37.017 | 181 | 89 | 5 | 23 | 203 | 136 | 291 | 4.59e-21 | 94.4 |
| Msa1337900 | AT5G60120.1 | 37.017 | 181 | 89 | 5 | 23 | 203 | 136 | 291 | 4.60e-21 | 94.4 |
| Msa1337900 | AT5G60120.2 | 37.017 | 181 | 89 | 5 | 23 | 203 | 136 | 291 | 4.92e-21 | 94.7 |
| Msa1337900 | AT2G39250.2 | 43.564 | 101 | 50 | 2 | 50 | 150 | 109 | 202 | 5.30e-20 | 88.2 |
| Msa1337900 | AT2G39250.1 | 43.564 | 101 | 50 | 2 | 50 | 150 | 109 | 202 | 1.41e-19 | 88.6 |
| Msa1337900 | AT3G54990.2 | 43.269 | 104 | 52 | 2 | 50 | 153 | 123 | 219 | 1.07e-15 | 76.3 |
| Msa1337900 | AT3G54990.1 | 43.269 | 104 | 52 | 2 | 50 | 153 | 123 | 219 | 3.59e-15 | 76.3 |
Find 100 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTATAATTTAGCTAAT+TGG | 0.083122 | tig0001530:-31342 | Msa1337900:three_prime_UTR |
| GCTTCAGTCATCTAAGTTTA+AGG | 0.098001 | tig0001530:-31645 | Msa1337900:CDS |
| GCTCAATTCAAAAGGGAATT+TGG | 0.170320 | tig0001530:-31429 | Msa1337900:three_prime_UTR |
| ATATTTATATATAGTATTAA+TGG | 0.232581 | tig0001530:+34742 | None:intergenic |
| ATCTAGCAGCATTGAAATAT+TGG | 0.269149 | tig0001530:-34018 | Msa1337900:CDS |
| AAGCTGTAGCTGCTTCTTCT+TGG | 0.308304 | tig0001530:+31954 | None:intergenic |
| ATAACGGCTGAGATCGAAAT+TGG | 0.311170 | tig0001530:+31889 | None:intergenic |
| TCTTTATAATTTAGCTAATT+GGG | 0.314207 | tig0001530:-31341 | Msa1337900:three_prime_UTR |
| CGTTGAGGTGGAGAAGTTCT+AGG | 0.318274 | tig0001530:+34558 | None:intergenic |
| TTGGGTGAAGAAGAATTTAA+AGG | 0.321665 | tig0001530:+34823 | None:intergenic |
| CATTAAGCTTACAAATAAAA+AGG | 0.328490 | tig0001530:-35024 | Msa1337900:five_prime_UTR |
| GTCATCGTTGCTATTATTGT+TGG | 0.330644 | tig0001530:+31850 | None:intergenic |
| GATTAATACTCACCTTCTTA+AGG | 0.332089 | tig0001530:+33816 | None:intergenic |
| ATGAATTATAGTATAGTGTT+TGG | 0.332488 | tig0001530:+34804 | None:intergenic |
| AAAGGGATGGGCTAAGGAAT+GGG | 0.338837 | tig0001530:+34841 | None:intergenic |
| GTCATCTAAGTTTAAGGAAA+TGG | 0.343211 | tig0001530:-31639 | Msa1337900:CDS |
| TCTAGCAGCATTGAAATATT+GGG | 0.363825 | tig0001530:-34017 | Msa1337900:CDS |
| AGCTGTAGCTGCTTCTTCTT+GGG | 0.378837 | tig0001530:+31955 | None:intergenic |
| AATGTCACAAAGATTAATAT+TGG | 0.380390 | tig0001530:+31817 | None:intergenic |
| CAATCAAGGGAGGAGTATAT+TGG | 0.384836 | tig0001530:-33841 | Msa1337900:CDS |
| ATCTCAGCCGTTATATTAAG+TGG | 0.390059 | tig0001530:-31880 | Msa1337900:CDS |
| ACAGTCAAATTCAATACAAT+TGG | 0.396468 | tig0001530:+31265 | None:intergenic |
| CTCAAACTCTAATGAAGAAC+TGG | 0.396693 | tig0001530:-31771 | Msa1337900:CDS |
| GTTTAAGGAAATGGTGGAAA+TGG | 0.403137 | tig0001530:-31630 | Msa1337900:CDS |
| TGAATTATAGTATAGTGTTT+GGG | 0.403305 | tig0001530:+34805 | None:intergenic |
| AATTACCGGAAAATTAATAA+TGG | 0.409895 | tig0001530:+33985 | None:intergenic |
| GGCAATAAGTATCTTTATCT+CGG | 0.416691 | tig0001530:-33443 | Msa1337900:CDS |
| TATCTTTATCTCGGAACATA+TGG | 0.418592 | tig0001530:-33434 | Msa1337900:intron |
| TACGTTTCATTATGACTTTG+AGG | 0.425712 | tig0001530:-31468 | Msa1337900:CDS |
| TTTGTGGCCGTCTGTAAAAT+CGG | 0.425770 | tig0001530:+34916 | None:intergenic |
| TCATCGTTGCTATTATTGTT+GGG | 0.426434 | tig0001530:+31851 | None:intergenic |
| TGGGTGAAGAAGAATTTAAA+GGG | 0.432032 | tig0001530:+34824 | None:intergenic |
| TTCATTAGAGTTTGAGTCGT+TGG | 0.432547 | tig0001530:+31778 | None:intergenic |
| ATTTGTGGGACAAGAATTGT+TGG | 0.438001 | tig0001530:-34350 | Msa1337900:CDS |
| GTTTAAGCCACTTAATATAA+CGG | 0.455696 | tig0001530:+31873 | None:intergenic |
| TAAAGGGATGGGCTAAGGAA+TGG | 0.457937 | tig0001530:+34840 | None:intergenic |
| ATAATGAAACGTAGGCATAA+TGG | 0.458894 | tig0001530:+31478 | None:intergenic |
| GTCGATATGAAGCTCATTTG+TGG | 0.463814 | tig0001530:-34365 | Msa1337900:CDS |
| ACGTTTCATTATGACTTTGA+GGG | 0.471905 | tig0001530:-31467 | Msa1337900:CDS |
| AGGGCTGATGTGGCACTAGT+TGG | 0.472897 | tig0001530:+31677 | None:intergenic |
| CAATATACAGAGGAGTTACT+AGG | 0.479847 | tig0001530:-34530 | Msa1337900:intron |
| TAATGGTGCATTAATTTGAA+AGG | 0.481532 | tig0001530:+34759 | None:intergenic |
| TCGATATGAAGCTCATTTGT+GGG | 0.483951 | tig0001530:-34364 | Msa1337900:CDS |
| AAGTACGTTTGAATGTCATC+AGG | 0.487256 | tig0001530:+31545 | None:intergenic |
| TCGATCAGGCACCGTTGGAC+AGG | 0.490675 | tig0001530:-34387 | Msa1337900:intron |
| CTCTTGAAAATTCTGTGATG+TGG | 0.491082 | tig0001530:+34969 | None:intergenic |
| ATGACTGAAGCAAAAGCTCT+AGG | 0.492154 | tig0001530:+31657 | None:intergenic |
| AATGAGTCTCAGAACAAGAA+AGG | 0.503226 | tig0001530:-34327 | Msa1337900:CDS |
| GGAAGGTGGGAGGCACGGAT+TGG | 0.503282 | tig0001530:-33476 | Msa1337900:CDS |
| TTCAGGTGCTTATGATAATG+AGG | 0.506979 | tig0001530:-34062 | Msa1337900:intron |
| TTCTATTGACGAAGCTACAT+TGG | 0.508550 | tig0001530:-31711 | Msa1337900:CDS |
| ATATCATATTGCTATTGTAA+AGG | 0.514934 | tig0001530:+31228 | None:intergenic |
| GAATTTAAAGGGATGGGCTA+AGG | 0.517366 | tig0001530:+34835 | None:intergenic |
| ATGAGTCTCAGAACAAGAAA+GGG | 0.517662 | tig0001530:-34326 | Msa1337900:CDS |
| TGACTGAAGCAAAAGCTCTA+GGG | 0.520622 | tig0001530:+31658 | None:intergenic |
| GGCTAAAAGATGGTTGTTTG+TGG | 0.524439 | tig0001530:+34900 | None:intergenic |
| TGAAGAAGAATTTAAAGGGA+TGG | 0.528945 | tig0001530:+34828 | None:intergenic |
| CAAAAGCTCTAGGGCTGATG+TGG | 0.531124 | tig0001530:+31667 | None:intergenic |
| TTGAAATGGAGAGTCAATCA+AGG | 0.532530 | tig0001530:-33855 | Msa1337900:CDS |
| AAGGGATGGGCTAAGGAATG+GGG | 0.543605 | tig0001530:+34842 | None:intergenic |
| GACATCATCATAACGGAAGG+TGG | 0.545087 | tig0001530:-33490 | Msa1337900:CDS |
| TTATGACTTTGAGGGTGCTG+AGG | 0.550831 | tig0001530:-31459 | Msa1337900:CDS |
| GAAGAAGAATTTAAAGGGAT+GGG | 0.551603 | tig0001530:+34829 | None:intergenic |
| TGTGATAGCCGGCTAAAAGA+TGG | 0.557449 | tig0001530:+34890 | None:intergenic |
| AGCTAAATTATAAAGAGTAT+CGG | 0.558781 | tig0001530:+31348 | None:intergenic |
| AGTATATTGGATCCTTAAGA+AGG | 0.558908 | tig0001530:-33828 | Msa1337900:intron |
| ATCTAAGTTTAAGGAAATGG+TGG | 0.564662 | tig0001530:-31636 | Msa1337900:CDS |
| TGCTTATGATAATGAGGAGA+CGG | 0.567000 | tig0001530:-34056 | Msa1337900:CDS |
| TATCATCGATCAGGCACCGT+TGG | 0.570700 | tig0001530:-34392 | Msa1337900:intron |
| AAATTTCAATGATACCATGT+TGG | 0.588011 | tig0001530:-31513 | Msa1337900:CDS |
| GTTGAGGTGGAGAAGTTCTA+GGG | 0.592000 | tig0001530:+34559 | None:intergenic |
| TGAAATGGAGAGTCAATCAA+GGG | 0.593771 | tig0001530:-33854 | Msa1337900:CDS |
| CTGTATATTGAGCTGCGTTG+AGG | 0.594111 | tig0001530:+34543 | None:intergenic |
| CTCCAACGTTGTTGACACAT+TGG | 0.595590 | tig0001530:+31595 | None:intergenic |
| TGTTCTAGACATCATCATAA+CGG | 0.603537 | tig0001530:-33497 | Msa1337900:intron |
| ATAACGGAAGGTGGGAGGCA+CGG | 0.604592 | tig0001530:-33481 | Msa1337900:CDS |
| TATATTGAGCTGCGTTGAGG+TGG | 0.606937 | tig0001530:+34546 | None:intergenic |
| ACGTAGGCATAATGGAGTTG+AGG | 0.611927 | tig0001530:+31486 | None:intergenic |
| CAGAACAAGAAAGGGAGACA+AGG | 0.613931 | tig0001530:-34318 | Msa1337900:intron |
| ACATCATCATAACGGAAGGT+GGG | 0.615401 | tig0001530:-33489 | Msa1337900:CDS |
| TGGTAACAGCATTAAGTCCA+CGG | 0.621825 | tig0001530:+31909 | None:intergenic |
| CTAGACATCATCATAACGGA+AGG | 0.629308 | tig0001530:-33493 | Msa1337900:intron |
| TTCCAATGTGTCAACAACGT+TGG | 0.630167 | tig0001530:-31597 | Msa1337900:CDS |
| CTAAATACAGAGGTGTAGCA+AGG | 0.631468 | tig0001530:-33681 | Msa1337900:intron |
| CTAGCAGCATTGAAATATTG+GGG | 0.632471 | tig0001530:-34016 | Msa1337900:CDS |
| GCTGGCAGAATTGTGATAGC+CGG | 0.635318 | tig0001530:+34879 | None:intergenic |
| CTTCATATCGACCTGTCCAA+CGG | 0.639587 | tig0001530:+34376 | None:intergenic |
| GATGTGGCACTAGTTGGTCG+AGG | 0.640586 | tig0001530:+31683 | None:intergenic |
| CCACCAAGGCAAAACGAACG+AGG | 0.646874 | tig0001530:-34590 | Msa1337900:CDS |
| TCAAAGTCATAATGAAACGT+AGG | 0.648931 | tig0001530:+31470 | None:intergenic |
| GGAGTTGAGGTCTTCCAACA+TGG | 0.661453 | tig0001530:+31499 | None:intergenic |
| AGCAGCTACAGCTTATGACA+TGG | 0.665369 | tig0001530:-31945 | Msa1337900:CDS |
| TCATCATAACGGAAGGTGGG+AGG | 0.671171 | tig0001530:-33486 | Msa1337900:CDS |
| GTGATATTTCATTGTCCACG+AGG | 0.678307 | tig0001530:+31741 | None:intergenic |
| CGGGGAGTATCTAAATACAG+AGG | 0.707462 | tig0001530:-33691 | Msa1337900:CDS |
| ATGGCAGCTATTGAATACCG+TGG | 0.709584 | tig0001530:-31926 | Msa1337900:CDS |
| AATGGAGAGTCAATCAAGGG+AGG | 0.710747 | tig0001530:-33851 | Msa1337900:CDS |
| AGAACTGGAATTTAGCCTCG+TGG | 0.711966 | tig0001530:-31756 | Msa1337900:CDS |
| AAGTAACACTGTCACCACCA+AGG | 0.725020 | tig0001530:-34604 | Msa1337900:CDS |
| CAACGCAGCTCAATATACAG+AGG | 0.725894 | tig0001530:-34540 | Msa1337900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCTTAAAATAAGTTTTAT+AGG | + | tig0001530:33630-33649 | None:intergenic | 10.0% |
| !! | TATATATATATATAAAGAAG+AGG | - | tig0001530:33819-33838 | Msa1337900:intron | 10.0% |
| !! | TTAGCTATATATATTAATAT+TGG | + | tig0001530:34118-34137 | None:intergenic | 10.0% |
| !!! | AATTTCTTTTTACTCAATTA+AGG | - | tig0001530:32691-32710 | Msa1337900:intron | 15.0% |
| !! | TAATTAAATACGATAAAAGT+TGG | + | tig0001530:33493-33512 | None:intergenic | 15.0% |
| !!! | TAAAAATTTATCTTTTCCAA+AGG | - | tig0001530:33521-33540 | Msa1337900:intron | 15.0% |
| !!! | AAAAATTTGATAATATGCAT+GGG | - | tig0001530:33984-34003 | Msa1337900:intron | 15.0% |
| !! | TCTTTATAATTTAGCTAATT+GGG | - | tig0001530:34907-34926 | Msa1337900:five_prime_UTR | 15.0% |
| !! | CATTAAGCTTACAAATAAAA+AGG | - | tig0001530:31224-31243 | Msa1337900:three_prime_UTR | 20.0% |
| !! | TGAATTATAGTATAGTGTTT+GGG | + | tig0001530:31446-31465 | None:intergenic | 20.0% |
| !! | ATGAATTATAGTATAGTGTT+TGG | + | tig0001530:31447-31466 | None:intergenic | 20.0% |
| !!! | AAGTACTTAAATGATTCTTT+TGG | + | tig0001530:32143-32162 | None:intergenic | 20.0% |
| !!! | AGATACCATTATTAATTTTC+CGG | - | tig0001530:32258-32277 | Msa1337900:intron | 20.0% |
| !! | AATTACCGGAAAATTAATAA+TGG | + | tig0001530:32266-32285 | None:intergenic | 20.0% |
| !! | TCAAAAAGAACTAATTGAAA+TGG | - | tig0001530:32379-32398 | Msa1337900:intron | 20.0% |
| !!! | TCATTTTGTAGTAAAAGAAA+AGG | + | tig0001530:32891-32910 | None:intergenic | 20.0% |
| !!! | TCATTTTGTAGTAAAAGAAA+AGG | + | tig0001530:32891-32910 | None:intergenic | 20.0% |
| !!! | TTTTTCCTTATAATTTGAGA+CGG | + | tig0001530:33433-33452 | None:intergenic | 20.0% |
| !!! | GGTCTTTTTCTTTATAATTT+GGG | + | tig0001530:33472-33491 | None:intergenic | 20.0% |
| !!! | TGGTCTTTTTCTTTATAATT+TGG | + | tig0001530:33473-33492 | None:intergenic | 20.0% |
| !!! | TTTTGCATTTAATTTTCCTT+TGG | + | tig0001530:33540-33559 | None:intergenic | 20.0% |
| !!! | AAACAATTTTCATTGGTTAT+GGG | + | tig0001530:33598-33617 | None:intergenic | 20.0% |
| !!! | AAAACAATTTTCATTGGTTA+TGG | + | tig0001530:33599-33618 | None:intergenic | 20.0% |
| !!! | GATGTAAAAACAATTTTCAT+TGG | + | tig0001530:33605-33624 | None:intergenic | 20.0% |
| !! | AAAATCACACTTATTAAGAA+AGG | + | tig0001530:33692-33711 | None:intergenic | 20.0% |
| !!! | TTTTTCCCTTTCTTATAATA+TGG | - | tig0001530:33710-33729 | Msa1337900:CDS | 20.0% |
| !!! | TTTTCCCTTTCTTATAATAT+GGG | - | tig0001530:33711-33730 | Msa1337900:CDS | 20.0% |
| !!! | GAAAAATTTGATAATATGCA+TGG | - | tig0001530:33983-34002 | Msa1337900:intron | 20.0% |
| !! | ATCTTATCTGACATTAAAAT+TGG | - | tig0001530:34227-34246 | Msa1337900:intron | 20.0% |
| !! | AATGTCACAAAGATTAATAT+TGG | + | tig0001530:34434-34453 | None:intergenic | 20.0% |
| !!! | TTTTATAGCTCAATTCAAAA+GGG | - | tig0001530:34812-34831 | Msa1337900:five_prime_UTR | 20.0% |
| !!! | AGCTAAATTATAAAGAGTAT+CGG | + | tig0001530:34903-34922 | None:intergenic | 20.0% |
| !! | CTCTTTATAATTTAGCTAAT+TGG | - | tig0001530:34906-34925 | Msa1337900:five_prime_UTR | 20.0% |
| !!! | ATATCATATTGCTATTGTAA+AGG | + | tig0001530:35023-35042 | None:intergenic | 20.0% |
| !! | TAATGGTGCATTAATTTGAA+AGG | + | tig0001530:31492-31511 | None:intergenic | 25.0% |
| !! | AACACTTCTTTTTATTCCAA+TGG | - | tig0001530:31557-31576 | Msa1337900:CDS | 25.0% |
| ! | AGAGAGGAAATAAATTATCA+AGG | + | tig0001530:31764-31783 | None:intergenic | 25.0% |
| ! | AAAAAATGTTATCATCGATC+AGG | - | tig0001530:31847-31866 | Msa1337900:CDS | 25.0% |
| !!! | TGTTTTAACTTCTTTTCATG+TGG | - | tig0001530:32017-32036 | Msa1337900:intron | 25.0% |
| ! | TATATTTAAACTACGTACCA+AGG | + | tig0001530:32091-32110 | None:intergenic | 25.0% |
| ! | AAAAAGTGGTTAGAAATTAC+CGG | + | tig0001530:32280-32299 | None:intergenic | 25.0% |
| ! | TGGATGCATATTAAAAAAAG+TGG | + | tig0001530:32294-32313 | None:intergenic | 25.0% |
| !!! | ACTTTTTTTAATATGCATCC+AGG | - | tig0001530:32293-32312 | Msa1337900:intron | 25.0% |
| ! | CTGAACTAATTAATAAATCC+TGG | + | tig0001530:32314-32333 | None:intergenic | 25.0% |
| ! | TCAAAGTAGTTTGATGTATA+TGG | + | tig0001530:32620-32639 | None:intergenic | 25.0% |
| ! | TTCTTAATTACACTCTTGTT+TGG | + | tig0001530:32669-32688 | None:intergenic | 25.0% |
| ! | CTCAATTAAGGATCAATTTA+AGG | - | tig0001530:32703-32722 | Msa1337900:intron | 25.0% |
| ! | ATATGGTAAGTTCAAAATCT+TGG | - | tig0001530:32831-32850 | Msa1337900:intron | 25.0% |
| ! | TAAATTTAGATTGTTGTACC+TGG | + | tig0001530:33120-33139 | None:intergenic | 25.0% |
| ! | AGGTACAACAATCTAAATTT+AGG | - | tig0001530:33119-33138 | Msa1337900:intron | 25.0% |
| ! | ACAACAATCTAAATTTAGGT+AGG | - | tig0001530:33123-33142 | Msa1337900:intron | 25.0% |
| ! | ATAGAAGCAATGAATTGAAT+GGG | + | tig0001530:33223-33242 | None:intergenic | 25.0% |
| ! | AATAGAAGCAATGAATTGAA+TGG | + | tig0001530:33224-33243 | None:intergenic | 25.0% |
| !! | CAGCATAAACATTAGTTTAT+TGG | + | tig0001530:33362-33381 | None:intergenic | 25.0% |
| ! | ATATAAAGAAGAGGATTCTT+TGG | - | tig0001530:33828-33847 | Msa1337900:intron | 25.0% |
| ! | TTCTTTGGTATCTATGAAAT+CGG | - | tig0001530:33843-33862 | Msa1337900:CDS | 25.0% |
| ! | ATTTAAACACAACTCACTTA+AGG | + | tig0001530:34022-34041 | None:intergenic | 25.0% |
| !!! | TGTTTGTTGTTGAGAAAAAT+TGG | + | tig0001530:34177-34196 | None:intergenic | 25.0% |
| !! | CAGATAAGATATTGATTAGT+CGG | + | tig0001530:34217-34236 | None:intergenic | 25.0% |
| ! | GTTTAAGCCACTTAATATAA+CGG | + | tig0001530:34378-34397 | None:intergenic | 25.0% |
| ! | AAATTTCAATGATACCATGT+TGG | - | tig0001530:34735-34754 | Msa1337900:five_prime_UTR | 25.0% |
| !! | GTTTTATAGCTCAATTCAAA+AGG | - | tig0001530:34811-34830 | Msa1337900:five_prime_UTR | 25.0% |
| ! | ACAGTCAAATTCAATACAAT+TGG | + | tig0001530:34986-35005 | None:intergenic | 25.0% |
| GAAGAAGAATTTAAAGGGAT+GGG | + | tig0001530:31422-31441 | None:intergenic | 30.0% | |
| TGAAGAAGAATTTAAAGGGA+TGG | + | tig0001530:31423-31442 | None:intergenic | 30.0% | |
| TGGGTGAAGAAGAATTTAAA+GGG | + | tig0001530:31427-31446 | None:intergenic | 30.0% | |
| TTGGGTGAAGAAGAATTTAA+AGG | + | tig0001530:31428-31447 | None:intergenic | 30.0% | |
| CAGATAAACATATACAAGAG+AGG | + | tig0001530:31780-31799 | None:intergenic | 30.0% | |
| GAGCTTGATGTTAAAATTTC+AGG | - | tig0001530:32169-32188 | Msa1337900:intron | 30.0% | |
| ! | ATCTAGCAGCATTGAAATAT+TGG | - | tig0001530:32230-32249 | Msa1337900:intron | 30.0% |
| ! | TCTAGCAGCATTGAAATATT+GGG | - | tig0001530:32231-32250 | Msa1337900:intron | 30.0% |
| AGTATATTGGATCCTTAAGA+AGG | - | tig0001530:32420-32439 | Msa1337900:intron | 30.0% | |
| GATTAATACTCACCTTCTTA+AGG | + | tig0001530:32435-32454 | None:intergenic | 30.0% | |
| AAAAATTGCAGAAAAAGCAG+TGG | - | tig0001530:32527-32546 | Msa1337900:intron | 30.0% | |
| AAAATTGCAGAAAAAGCAGT+GGG | - | tig0001530:32528-32547 | Msa1337900:intron | 30.0% | |
| ! | GATGATGTCTAGAACATTAA+TGG | + | tig0001530:32747-32766 | None:intergenic | 30.0% |
| ! | TGTTCTAGACATCATCATAA+CGG | - | tig0001530:32751-32770 | Msa1337900:intron | 30.0% |
| GGCAATAAGTATCTTTATCT+CGG | - | tig0001530:32805-32824 | Msa1337900:intron | 30.0% | |
| TATCTTTATCTCGGAACATA+TGG | - | tig0001530:32814-32833 | Msa1337900:intron | 30.0% | |
| ACACTAGTGATTCAAAATCT+TGG | - | tig0001530:32930-32949 | Msa1337900:intron | 30.0% | |
| TGTACGTATAAATGATCGTA+TGG | - | tig0001530:33039-33058 | Msa1337900:intron | 30.0% | |
| ! | AATTGAATGGGACTTTTCTA+AGG | + | tig0001530:33211-33230 | None:intergenic | 30.0% |
| CTATGGAGTAATAACTGAAT+TGG | + | tig0001530:33253-33272 | None:intergenic | 30.0% | |
| !!! | TTCTCTTGCTATTTTTTTCG+TGG | + | tig0001530:33388-33407 | None:intergenic | 30.0% |
| CCTTCCCATATTATAAGAAA+GGG | + | tig0001530:33718-33737 | None:intergenic | 30.0% | |
| TCCTTCCCATATTATAAGAA+AGG | + | tig0001530:33719-33738 | None:intergenic | 30.0% | |
| TTTCTTATAATATGGGAAGG+AGG | - | tig0001530:33718-33737 | Msa1337900:intron | 30.0% | |
| TTCTTATAATATGGGAAGGA+GGG | - | tig0001530:33719-33738 | Msa1337900:intron | 30.0% | |
| TAATATGCATGGGTGTATAT+TGG | - | tig0001530:33994-34013 | Msa1337900:CDS | 30.0% | |
| ! | TCATCGTTGCTATTATTGTT+GGG | + | tig0001530:34400-34419 | None:intergenic | 30.0% |
| GTCATCTAAGTTTAAGGAAA+TGG | - | tig0001530:34609-34628 | Msa1337900:CDS | 30.0% | |
| ATCTAAGTTTAAGGAAATGG+TGG | - | tig0001530:34612-34631 | Msa1337900:CDS | 30.0% | |
| ATAATGAAACGTAGGCATAA+TGG | + | tig0001530:34773-34792 | None:intergenic | 30.0% | |
| TCAAAGTCATAATGAAACGT+AGG | + | tig0001530:34781-34800 | None:intergenic | 30.0% | |
| TACGTTTCATTATGACTTTG+AGG | - | tig0001530:34780-34799 | Msa1337900:five_prime_UTR | 30.0% | |
| ACGTTTCATTATGACTTTGA+GGG | - | tig0001530:34781-34800 | Msa1337900:five_prime_UTR | 30.0% | |
| ! | ATTGGGATTTAAGCTTTTAG+AGG | - | tig0001530:34924-34943 | Msa1337900:five_prime_UTR | 30.0% |
| CTCTTGAAAATTCTGTGATG+TGG | + | tig0001530:31282-31301 | None:intergenic | 35.0% | |
| ! | ACAAACAACCATCTTTTAGC+CGG | - | tig0001530:31350-31369 | Msa1337900:three_prime_UTR | 35.0% |
| CAATATACAGAGGAGTTACT+AGG | - | tig0001530:31718-31737 | Msa1337900:CDS | 35.0% | |
| AGAGGAGTTACTAGGTAATT+TGG | - | tig0001530:31726-31745 | Msa1337900:CDS | 35.0% | |
| TCGATATGAAGCTCATTTGT+GGG | - | tig0001530:31884-31903 | Msa1337900:CDS | 35.0% | |
| ATTTGTGGGACAAGAATTGT+TGG | - | tig0001530:31898-31917 | Msa1337900:CDS | 35.0% | |
| AATGAGTCTCAGAACAAGAA+AGG | - | tig0001530:31921-31940 | Msa1337900:CDS | 35.0% | |
| ATGAGTCTCAGAACAAGAAA+GGG | - | tig0001530:31922-31941 | Msa1337900:CDS | 35.0% | |
| CATGTGGCATTTCAATTCTA+TGG | - | tig0001530:32033-32052 | Msa1337900:intron | 35.0% | |
| ! | TTCAGGTGCTTATGATAATG+AGG | - | tig0001530:32186-32205 | Msa1337900:intron | 35.0% |
| ! | TGCTTATGATAATGAGGAGA+CGG | - | tig0001530:32192-32211 | Msa1337900:intron | 35.0% |
| ! | CTAGCAGCATTGAAATATTG+GGG | - | tig0001530:32232-32251 | Msa1337900:intron | 35.0% |
| TTGAAATGGAGAGTCAATCA+AGG | - | tig0001530:32393-32412 | Msa1337900:intron | 35.0% | |
| TGAAATGGAGAGTCAATCAA+GGG | - | tig0001530:32394-32413 | Msa1337900:intron | 35.0% | |
| TCAGTTATTACTCCATAGTG+TGG | - | tig0001530:33255-33274 | Msa1337900:intron | 35.0% | |
| TCACATGTACTCACATTCAA+TGG | - | tig0001530:33312-33331 | Msa1337900:intron | 35.0% | |
| CACATGTACTCACATTCAAT+GGG | - | tig0001530:33313-33332 | Msa1337900:intron | 35.0% | |
| ! | TTCCTTATAATTTGAGACGG+AGG | + | tig0001530:33430-33449 | None:intergenic | 35.0% |
| CCCTTTCTTATAATATGGGA+AGG | - | tig0001530:33715-33734 | Msa1337900:intron | 35.0% | |
| ACAACAAACACAGCTAAATC+TGG | - | tig0001530:34187-34206 | Msa1337900:intron | 35.0% | |
| ATCTCAGCCGTTATATTAAG+TGG | - | tig0001530:34368-34387 | Msa1337900:CDS | 35.0% | |
| ! | GTCATCGTTGCTATTATTGT+TGG | + | tig0001530:34401-34420 | None:intergenic | 35.0% |
| TTCATTAGAGTTTGAGTCGT+TGG | + | tig0001530:34473-34492 | None:intergenic | 35.0% | |
| CTCAAACTCTAATGAAGAAC+TGG | - | tig0001530:34477-34496 | Msa1337900:intron | 35.0% | |
| TTCTATTGACGAAGCTACAT+TGG | - | tig0001530:34537-34556 | Msa1337900:CDS | 35.0% | |
| GCTTCAGTCATCTAAGTTTA+AGG | - | tig0001530:34603-34622 | Msa1337900:CDS | 35.0% | |
| ! | GTTTAAGGAAATGGTGGAAA+TGG | - | tig0001530:34618-34637 | Msa1337900:CDS | 35.0% |
| AAGTACGTTTGAATGTCATC+AGG | + | tig0001530:34706-34725 | None:intergenic | 35.0% | |
| GCTCAATTCAAAAGGGAATT+TGG | - | tig0001530:34819-34838 | Msa1337900:five_prime_UTR | 35.0% | |
| !! | CATAGAGCCGATTTTACAGA+CGG | - | tig0001530:31325-31344 | Msa1337900:three_prime_UTR | 40.0% |
| TTTGTGGCCGTCTGTAAAAT+CGG | + | tig0001530:31335-31354 | None:intergenic | 40.0% | |
| GGCTAAAAGATGGTTGTTTG+TGG | + | tig0001530:31351-31370 | None:intergenic | 40.0% | |
| GGGGTTAGAAAAATTTGTGC+TGG | + | tig0001530:31390-31409 | None:intergenic | 40.0% | |
| !! | GAATTTAAAGGGATGGGCTA+AGG | + | tig0001530:31416-31435 | None:intergenic | 40.0% |
| !!! | TTCTGCGATTTTTTCGCCAT+TGG | + | tig0001530:31576-31595 | None:intergenic | 40.0% |
| GTCGATATGAAGCTCATTTG+TGG | - | tig0001530:31883-31902 | Msa1337900:CDS | 40.0% | |
| GTGGCATTTCAATTCTATGG+TGG | - | tig0001530:32036-32055 | Msa1337900:intron | 40.0% | |
| ! | CAATCAAGGGAGGAGTATAT+TGG | - | tig0001530:32407-32426 | Msa1337900:intron | 40.0% |
| !! | GAAAAAGCAGTGGGTTTTCA+CGG | - | tig0001530:32537-32556 | Msa1337900:intron | 40.0% |
| !! | AAAAAGCAGTGGGTTTTCAC+GGG | - | tig0001530:32538-32557 | Msa1337900:intron | 40.0% |
| ! | CTAAATACAGAGGTGTAGCA+AGG | - | tig0001530:32567-32586 | Msa1337900:intron | 40.0% |
| ! | CTAGACATCATCATAACGGA+AGG | - | tig0001530:32755-32774 | Msa1337900:intron | 40.0% |
| ! | ACATCATCATAACGGAAGGT+GGG | - | tig0001530:32759-32778 | Msa1337900:intron | 40.0% |
| AAGTAGTTAAGTAGCTAGCC+AGG | - | tig0001530:33099-33118 | Msa1337900:intron | 40.0% | |
| CTCCTCCGTCTCAAATTATA+AGG | - | tig0001530:33425-33444 | Msa1337900:intron | 40.0% | |
| TGGTAACAGCATTAAGTCCA+CGG | + | tig0001530:34342-34361 | None:intergenic | 40.0% | |
| ATAACGGCTGAGATCGAAAT+TGG | + | tig0001530:34362-34381 | None:intergenic | 40.0% | |
| GTGATATTTCATTGTCCACG+AGG | + | tig0001530:34510-34529 | None:intergenic | 40.0% | |
| TGACTGAAGCAAAAGCTCTA+GGG | + | tig0001530:34593-34612 | None:intergenic | 40.0% | |
| ATGACTGAAGCAAAAGCTCT+AGG | + | tig0001530:34594-34613 | None:intergenic | 40.0% | |
| TTCCAATGTGTCAACAACGT+TGG | - | tig0001530:34651-34670 | Msa1337900:CDS | 40.0% | |
| TGTGATAGCCGGCTAAAAGA+TGG | + | tig0001530:31361-31380 | None:intergenic | 45.0% | |
| !! | AAAGGGATGGGCTAAGGAAT+GGG | + | tig0001530:31410-31429 | None:intergenic | 45.0% |
| !! | TAAAGGGATGGGCTAAGGAA+TGG | + | tig0001530:31411-31430 | None:intergenic | 45.0% |
| AAGTAACACTGTCACCACCA+AGG | - | tig0001530:31644-31663 | Msa1337900:CDS | 45.0% | |
| ! | TTTCCTCGTTCGTTTTGCCT+TGG | + | tig0001530:31664-31683 | None:intergenic | 45.0% |
| GTTGAGGTGGAGAAGTTCTA+GGG | + | tig0001530:31692-31711 | None:intergenic | 45.0% | |
| TATATTGAGCTGCGTTGAGG+TGG | + | tig0001530:31705-31724 | None:intergenic | 45.0% | |
| CTGTATATTGAGCTGCGTTG+AGG | + | tig0001530:31708-31727 | None:intergenic | 45.0% | |
| CAACGCAGCTCAATATACAG+AGG | - | tig0001530:31708-31727 | Msa1337900:CDS | 45.0% | |
| TGTTTATCTGTCTCTCGCGT+TGG | - | tig0001530:31790-31809 | Msa1337900:CDS | 45.0% | |
| CTTCATATCGACCTGTCCAA+CGG | + | tig0001530:31875-31894 | None:intergenic | 45.0% | |
| CAGAACAAGAAAGGGAGACA+AGG | - | tig0001530:31930-31949 | Msa1337900:CDS | 45.0% | |
| CTGATTGTTGCAGTCTACCT+TGG | - | tig0001530:32071-32090 | Msa1337900:intron | 45.0% | |
| AATGGAGAGTCAATCAAGGG+AGG | - | tig0001530:32397-32416 | Msa1337900:intron | 45.0% | |
| !! | AAAAGCAGTGGGTTTTCACG+GGG | - | tig0001530:32539-32558 | Msa1337900:intron | 45.0% |
| !! | CGGGGAGTATCTAAATACAG+AGG | - | tig0001530:32557-32576 | Msa1337900:intron | 45.0% |
| ! | GACATCATCATAACGGAAGG+TGG | - | tig0001530:32758-32777 | Msa1337900:intron | 45.0% |
| !!! | GCACGGATTGGCAAAGTTTT+TGG | - | tig0001530:32784-32803 | Msa1337900:intron | 45.0% |
| ! | TCCATAGTGTGGCTTTGCAT+GGG | - | tig0001530:33266-33285 | Msa1337900:intron | 45.0% |
| ! | GGCTTTGCATGGGTTATGTA+TGG | - | tig0001530:33276-33295 | Msa1337900:intron | 45.0% |
| AGCTGTAGCTGCTTCTTCTT+GGG | + | tig0001530:34296-34315 | None:intergenic | 45.0% | |
| AAGCTGTAGCTGCTTCTTCT+TGG | + | tig0001530:34297-34316 | None:intergenic | 45.0% | |
| AGCAGCTACAGCTTATGACA+TGG | - | tig0001530:34303-34322 | Msa1337900:intron | 45.0% | |
| ATGGCAGCTATTGAATACCG+TGG | - | tig0001530:34322-34341 | Msa1337900:CDS | 45.0% | |
| AGAACTGGAATTTAGCCTCG+TGG | - | tig0001530:34492-34511 | Msa1337900:intron | 45.0% | |
| CTCCAACGTTGTTGACACAT+TGG | + | tig0001530:34656-34675 | None:intergenic | 45.0% | |
| ! | ACGTAGGCATAATGGAGTTG+AGG | + | tig0001530:34765-34784 | None:intergenic | 45.0% |
| !! | TTATGACTTTGAGGGTGCTG+AGG | - | tig0001530:34789-34808 | Msa1337900:five_prime_UTR | 45.0% |
| !! | ATATTTATATATAGTATTAA+TGG | + | tig0001530:31509-31528 | None:intergenic | 5.0% |
| !!! | AATTAAATTTTTATATAACA+CGG | + | tig0001530:34061-34080 | None:intergenic | 5.0% |
| GCTGGCAGAATTGTGATAGC+CGG | + | tig0001530:31372-31391 | None:intergenic | 50.0% | |
| !! | AAGGGATGGGCTAAGGAATG+GGG | + | tig0001530:31409-31428 | None:intergenic | 50.0% |
| CGTTGAGGTGGAGAAGTTCT+AGG | + | tig0001530:31693-31712 | None:intergenic | 50.0% | |
| ! | TATCATCGATCAGGCACCGT+TGG | - | tig0001530:31856-31875 | Msa1337900:CDS | 50.0% |
| ! | TCATCATAACGGAAGGTGGG+AGG | - | tig0001530:32762-32781 | Msa1337900:intron | 50.0% |
| ! | CTCCATAGTGTGGCTTTGCA+TGG | - | tig0001530:33265-33284 | Msa1337900:intron | 50.0% |
| ACCCATGCAAAGCCACACTA+TGG | + | tig0001530:33270-33289 | None:intergenic | 50.0% | |
| !! | CAAAAGCTCTAGGGCTGATG+TGG | + | tig0001530:34584-34603 | None:intergenic | 50.0% |
| GGAGTTGAGGTCTTCCAACA+TGG | + | tig0001530:34752-34771 | None:intergenic | 50.0% | |
| ! | CCTCGTTCGTTTTGCCTTGG+TGG | + | tig0001530:31661-31680 | None:intergenic | 55.0% |
| CCACCAAGGCAAAACGAACG+AGG | - | tig0001530:31658-31677 | Msa1337900:CDS | 55.0% | |
| ! | ATAACGGAAGGTGGGAGGCA+CGG | - | tig0001530:32767-32786 | Msa1337900:intron | 55.0% |
| GATGTGGCACTAGTTGGTCG+AGG | + | tig0001530:34568-34587 | None:intergenic | 55.0% | |
| AGGGCTGATGTGGCACTAGT+TGG | + | tig0001530:34574-34593 | None:intergenic | 55.0% | |
| ! | TCGATCAGGCACCGTTGGAC+AGG | - | tig0001530:31861-31880 | Msa1337900:CDS | 60.0% |
| ! | GGAAGGTGGGAGGCACGGAT+TGG | - | tig0001530:32772-32791 | Msa1337900:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0001530 | gene | 31209 | 35061 | 31209 | ID=Msa1337900;Name=Msa1337900 |
| tig0001530 | mRNA | 31209 | 35061 | 31209 | ID=Msa1337900-mRNA-1;Parent=Msa1337900;Name=Msa1337900-mRNA-1;_AED=0.11;_eAED=0.11;_QI=367|0.83|1|1|1|1|7|242|355 |
| tig0001530 | exon | 31209 | 31980 | 31209 | ID=Msa1337900-mRNA-1:exon:1445;Parent=Msa1337900-mRNA-1 |
| tig0001530 | exon | 33435 | 33511 | 33435 | ID=Msa1337900-mRNA-1:exon:1444;Parent=Msa1337900-mRNA-1 |
| tig0001530 | exon | 33682 | 33732 | 33682 | ID=Msa1337900-mRNA-1:exon:1443;Parent=Msa1337900-mRNA-1 |
| tig0001530 | exon | 33829 | 33902 | 33829 | ID=Msa1337900-mRNA-1:exon:1442;Parent=Msa1337900-mRNA-1 |
| tig0001530 | exon | 33991 | 34079 | 33991 | ID=Msa1337900-mRNA-1:exon:1441;Parent=Msa1337900-mRNA-1 |
| tig0001530 | exon | 34319 | 34401 | 34319 | ID=Msa1337900-mRNA-1:exon:1440;Parent=Msa1337900-mRNA-1 |
| tig0001530 | exon | 34531 | 35061 | 34531 | ID=Msa1337900-mRNA-1:exon:1439;Parent=Msa1337900-mRNA-1 |
| tig0001530 | five_prime_UTR | 34695 | 35061 | 34695 | ID=Msa1337900-mRNA-1:five_prime_utr;Parent=Msa1337900-mRNA-1 |
| tig0001530 | CDS | 34531 | 34694 | 34531 | ID=Msa1337900-mRNA-1:cds;Parent=Msa1337900-mRNA-1 |
| tig0001530 | CDS | 34319 | 34401 | 34319 | ID=Msa1337900-mRNA-1:cds;Parent=Msa1337900-mRNA-1 |
| tig0001530 | CDS | 33991 | 34079 | 33991 | ID=Msa1337900-mRNA-1:cds;Parent=Msa1337900-mRNA-1 |
| tig0001530 | CDS | 33829 | 33902 | 33829 | ID=Msa1337900-mRNA-1:cds;Parent=Msa1337900-mRNA-1 |
| tig0001530 | CDS | 33682 | 33732 | 33682 | ID=Msa1337900-mRNA-1:cds;Parent=Msa1337900-mRNA-1 |
| tig0001530 | CDS | 33435 | 33511 | 33435 | ID=Msa1337900-mRNA-1:cds;Parent=Msa1337900-mRNA-1 |
| tig0001530 | CDS | 31451 | 31980 | 31451 | ID=Msa1337900-mRNA-1:cds;Parent=Msa1337900-mRNA-1 |
| tig0001530 | three_prime_UTR | 31209 | 31450 | 31209 | ID=Msa1337900-mRNA-1:three_prime_utr;Parent=Msa1337900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
