Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358090 | AES94086.2 | 100.000 | 270 | 0 | 0 | 1 | 270 | 33 | 302 | 0.0 | 556 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358090 | sp|Q54KJ8|T2EB_DICDI | 26.442 | 208 | 139 | 6 | 56 | 260 | 63 | 259 | 1.76e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358090 | G7KDE8 | 100.000 | 270 | 0 | 0 | 1 | 270 | 33 | 302 | 0.0 | 556 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0693520 | Msa1358090 | 0.802864 | 4.581472e-49 | -8.615850e-47 |
| Msa0708600 | Msa1358090 | 0.807913 | 4.006808e-50 | -8.615850e-47 |
| Msa0713060 | Msa1358090 | 0.826405 | 2.762483e-54 | -8.615850e-47 |
| Msa0732050 | Msa1358090 | 0.850890 | 1.266871e-60 | -8.615850e-47 |
| Msa0753400 | Msa1358090 | 0.879067 | 1.685992e-69 | -8.615850e-47 |
| Msa0795340 | Msa1358090 | 0.836339 | 9.918618e-57 | -8.615850e-47 |
| Msa0810440 | Msa1358090 | 0.813514 | 2.463463e-51 | -8.615850e-47 |
| Msa0832620 | Msa1358090 | 0.998558 | 1.023334e-268 | -8.615850e-47 |
| Msa0174100 | Msa1358090 | 0.847588 | 1.051862e-59 | -8.615850e-47 |
| Msa0182020 | Msa1358090 | 0.844355 | 7.957843e-59 | -8.615850e-47 |
| Msa1252810 | Msa1358090 | 0.831009 | 2.127420e-55 | -8.615850e-47 |
| Msa1272010 | Msa1358090 | 0.819548 | 1.096451e-52 | -8.615850e-47 |
| Msa1279100 | Msa1358090 | 0.807762 | 4.314325e-50 | -8.615850e-47 |
| Msa1070540 | Msa1358090 | 0.803403 | 3.545424e-49 | -8.615850e-47 |
| Msa1101240 | Msa1358090 | 0.802656 | 5.057921e-49 | -8.615850e-47 |
| Msa1109810 | Msa1358090 | 0.802705 | 4.941496e-49 | -8.615850e-47 |
| Msa1199870 | Msa1358090 | 0.812918 | 3.329098e-51 | -8.615850e-47 |
| Msa0528990 | Msa1358090 | 0.802555 | 5.307620e-49 | -8.615850e-47 |
| Msa0574930 | Msa1358090 | 0.817730 | 2.833638e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358090 | MtrunA17_Chr5g0397801 | 100.000 | 270 | 0 | 0 | 1 | 270 | 1 | 270 | 0.0 | 555 |
| Msa1358090 | MtrunA17_Chr8g0386401 | 80.392 | 204 | 39 | 1 | 65 | 267 | 1 | 204 | 3.20e-121 | 344 |
| Msa1358090 | MtrunA17_Chr8g0386391 | 57.576 | 66 | 15 | 1 | 1 | 53 | 1 | 66 | 1.54e-14 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1358090 | AT4G20330.1 | 64.912 | 285 | 82 | 4 | 1 | 270 | 1 | 282 | 9.90e-122 | 349 |
| Msa1358090 | AT4G21010.1 | 55.036 | 278 | 110 | 6 | 1 | 266 | 1 | 275 | 1.26e-93 | 277 |
Find 94 sgRNAs with CRISPR-Local
Find 299 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGCTGTTATTGACTTAA+AGG | 0.158931 | tig0016220:-274549 | Msa1358090:CDS |
| AAACAAGATTCTTAAGTAAA+AGG | 0.159439 | tig0016220:-272829 | Msa1358090:three_prime_UTR |
| TCCCCATCGTATCTTACTTT+TGG | 0.237589 | tig0016220:+274775 | None:intergenic |
| TAGCTTACTGCCTCAGGTTT+TGG | 0.239321 | tig0016220:-272929 | Msa1358090:three_prime_UTR |
| CTTCTGGAAATTTGCGTATC+AGG | 0.239866 | tig0016220:+274573 | None:intergenic |
| AACTGTAATGGAGGACTTAC+AGG | 0.272992 | tig0016220:-274516 | Msa1358090:intron |
| ATGGGCACTTTAGGATCATT+AGG | 0.284072 | tig0016220:+273322 | None:intergenic |
| AATTCTCGTAGTTTATTTAC+TGG | 0.285031 | tig0016220:-273019 | Msa1358090:three_prime_UTR |
| GGATGACACATTGCAAATTC+AGG | 0.289384 | tig0016220:-272869 | Msa1358090:three_prime_UTR |
| TTCAGGACCATAAAATTATA+TGG | 0.311862 | tig0016220:+272598 | None:intergenic |
| TCAATAACAGCAATGCCTTC+TGG | 0.315673 | tig0016220:+274557 | None:intergenic |
| AGGTCATCATCCACCTTAAT+GGG | 0.315953 | tig0016220:+273304 | None:intergenic |
| ATTACATCACTCTGAAATTC+AGG | 0.316206 | tig0016220:+272581 | None:intergenic |
| TCATTCTTAGGTCCTACTTC+TGG | 0.318907 | tig0016220:-272675 | Msa1358090:three_prime_UTR |
| ACATTGTCCCTCTCATTCTT+AGG | 0.322233 | tig0016220:-272687 | Msa1358090:three_prime_UTR |
| TGAAAGGTGGCAGGGAGATT+TGG | 0.323843 | tig0016220:-273384 | Msa1358090:CDS |
| AACCACCAGAAGAGGGGTTC+TGG | 0.326570 | tig0016220:+272796 | None:intergenic |
| TAGGTCATCATCCACCTTAA+TGG | 0.327997 | tig0016220:+273303 | None:intergenic |
| TCCACCTTAATGGGCACTTT+AGG | 0.329618 | tig0016220:+273313 | None:intergenic |
| AATGACTAAGTTGGCTATCT+TGG | 0.349953 | tig0016220:+272723 | None:intergenic |
| TTTAAATCAAGGGCAGAAAA+TGG | 0.358497 | tig0016220:-272750 | Msa1358090:three_prime_UTR |
| ATAATAAAGATATATCCTTC+TGG | 0.363335 | tig0016220:+272957 | None:intergenic |
| TGATCCTAAAGTGCCCATTA+AGG | 0.368344 | tig0016220:-273317 | Msa1358090:CDS |
| AAATTCAGGGTATTCCTTCC+AGG | 0.368853 | tig0016220:-272855 | Msa1358090:three_prime_UTR |
| TTGACCGGAGCAAGAGCATT+TGG | 0.376765 | tig0016220:+276418 | None:intergenic |
| CTCTTTGCAGTGTTAGTAGC+AGG | 0.378308 | tig0016220:+273202 | None:intergenic |
| AACAAGATTCTTAAGTAAAA+GGG | 0.380183 | tig0016220:-272828 | Msa1358090:three_prime_UTR |
| CGCTTCATTTGAGCTCCAAC+AGG | 0.397843 | tig0016220:+276343 | None:intergenic |
| GCTGACTAATGCCCATCTTC+CGG | 0.401133 | tig0016220:-273098 | Msa1358090:CDS |
| ATAGTCGAAACATGCTCTTC+GGG | 0.403328 | tig0016220:-274615 | Msa1358090:intron |
| GAGGAGGAGTGCAGCACAAA+TGG | 0.404625 | tig0016220:-273182 | Msa1358090:CDS |
| GACTCGGCAGGCTTTAACAT+TGG | 0.404721 | tig0016220:-274869 | Msa1358090:CDS |
| TTATATTGTTTGTTGCCTAT+TGG | 0.409041 | tig0016220:-272638 | Msa1358090:three_prime_UTR |
| ATTAGTCAGCTTGGTCCTCT+TGG | 0.410191 | tig0016220:+273111 | None:intergenic |
| TTGTATTAGCTTACTGCCTC+AGG | 0.411602 | tig0016220:-272935 | Msa1358090:three_prime_UTR |
| TTAAGAATCTTGTTTAATCC+TGG | 0.415946 | tig0016220:+272837 | None:intergenic |
| TATAGTCGAAACATGCTCTT+CGG | 0.434439 | tig0016220:-274616 | Msa1358090:intron |
| CACGCTGAGTTACTTAAATC+AGG | 0.434820 | tig0016220:+273051 | None:intergenic |
| TGGGCACTTTAGGATCATTA+GGG | 0.444208 | tig0016220:+273323 | None:intergenic |
| GATATATCCTTCTGGACAAT+GGG | 0.445314 | tig0016220:+272965 | None:intergenic |
| AGGTCGTATCATTTAAATCA+AGG | 0.462906 | tig0016220:-272761 | Msa1358090:three_prime_UTR |
| TAAGTAACTCAGCGTGTGTT+GGG | 0.463094 | tig0016220:-273044 | Msa1358090:three_prime_UTR |
| GTCTCTTTATTCTCACCAAT+AGG | 0.465310 | tig0016220:+272623 | None:intergenic |
| CATTATTCATTTCCAGAAGT+AGG | 0.468259 | tig0016220:+272663 | None:intergenic |
| TATAGGCTTTGAAAGGTGGC+AGG | 0.480454 | tig0016220:-273393 | Msa1358090:intron |
| GCTGTCCAACTTTGATTCAC+AGG | 0.485843 | tig0016220:-273359 | Msa1358090:CDS |
| GTCTTCCTGTGAATCAAAGT+TGG | 0.504653 | tig0016220:+273354 | None:intergenic |
| GAAATTCAGATGGCGTTACA+AGG | 0.505735 | tig0016220:-276529 | Msa1358090:intron |
| GGATTCATACCCAACTGTAA+TGG | 0.506042 | tig0016220:-274528 | Msa1358090:CDS |
| GGCCAGAACCCCTCTTCTGG+TGG | 0.510290 | tig0016220:-272798 | Msa1358090:three_prime_UTR |
| TTCAGTTTATAGGCTTTGAA+AGG | 0.517712 | tig0016220:-273400 | Msa1358090:intron |
| AGATATATCCTTCTGGACAA+TGG | 0.524958 | tig0016220:+272964 | None:intergenic |
| GATGACACATTGCAAATTCA+GGG | 0.531180 | tig0016220:-272868 | Msa1358090:three_prime_UTR |
| TGTGCCAAATGCTCTTGCTC+CGG | 0.535916 | tig0016220:-276422 | Msa1358090:CDS |
| GAGATTTCCCATTGTCCAGA+AGG | 0.536634 | tig0016220:-272972 | Msa1358090:three_prime_UTR |
| GAATCTTGTTTAATCCTGGA+AGG | 0.542161 | tig0016220:+272841 | None:intergenic |
| TTAAGTAACTCAGCGTGTGT+TGG | 0.543699 | tig0016220:-273045 | Msa1358090:three_prime_UTR |
| TGTAAGTCCTCCATTACAGT+TGG | 0.544872 | tig0016220:+274518 | None:intergenic |
| ATCCAAAAGTAAGATACGAT+GGG | 0.545740 | tig0016220:-274777 | Msa1358090:CDS |
| GGTCGTATCATTTAAATCAA+GGG | 0.554513 | tig0016220:-272760 | Msa1358090:three_prime_UTR |
| TTGCAATGTGTCATCCACTC+TGG | 0.556144 | tig0016220:+272876 | None:intergenic |
| AATCCAAAAGTAAGATACGA+TGG | 0.561739 | tig0016220:-274778 | Msa1358090:CDS |
| ATGTTGAAGTCTCTCTGTAT+CGG | 0.571558 | tig0016220:+276387 | None:intergenic |
| ACTCTGCTAAATGACTAAGT+TGG | 0.574081 | tig0016220:+272714 | None:intergenic |
| GTGATATGATTGATATAGAG+AGG | 0.575017 | tig0016220:-273249 | Msa1358090:CDS |
| AGTATTCGTAAAGCTCCTGT+TGG | 0.575171 | tig0016220:-276358 | Msa1358090:CDS |
| AAGTAGGACCTAAGAATGAG+AGG | 0.577350 | tig0016220:+272679 | None:intergenic |
| AAGATGGGCATTAGTCAGCT+TGG | 0.579562 | tig0016220:+273102 | None:intergenic |
| CTTAAGTAAAAGGGCAAAGG+TGG | 0.580077 | tig0016220:-272819 | Msa1358090:three_prime_UTR |
| CTGATACGCAAATTTCCAGA+AGG | 0.581325 | tig0016220:-274572 | Msa1358090:CDS |
| ATCGAGCATAGCAGCAAACA+AGG | 0.582292 | tig0016220:-276458 | Msa1358090:CDS |
| AGTTTATAGGCTTTGAAAGG+TGG | 0.583829 | tig0016220:-273397 | Msa1358090:intron |
| ATTCTTAAGTAAAAGGGCAA+AGG | 0.590714 | tig0016220:-272822 | Msa1358090:three_prime_UTR |
| TCCTAAAGTGCCCATTAAGG+TGG | 0.592622 | tig0016220:-273314 | Msa1358090:CDS |
| AGTAGGACCTAAGAATGAGA+GGG | 0.596404 | tig0016220:+272680 | None:intergenic |
| TGTTAGCTTTCATGTCCACA+TGG | 0.600643 | tig0016220:+274827 | None:intergenic |
| GTAAGTCCTCCATTACAGTT+GGG | 0.602392 | tig0016220:+274519 | None:intergenic |
| AGGAGTGCAGCACAAATGGA+AGG | 0.606142 | tig0016220:-273178 | Msa1358090:CDS |
| GTATCGGTCGAAAATTTGAC+CGG | 0.607296 | tig0016220:+276403 | None:intergenic |
| CACTTTAGGATCATTAGGGT+AGG | 0.617730 | tig0016220:+273327 | None:intergenic |
| TGGGGAAAGATTCTCTTACA+AGG | 0.617929 | tig0016220:-274758 | Msa1358090:intron |
| TTCATACCCAACTGTAATGG+AGG | 0.622275 | tig0016220:-274525 | Msa1358090:CDS |
| AATCTGTGACGAACTCATCA+CGG | 0.630301 | tig0016220:-276900 | Msa1358090:intron |
| TGATATGATTGATATAGAGA+GGG | 0.634684 | tig0016220:-273248 | Msa1358090:CDS |
| ATAGGCTTTGAAAGGTGGCA+GGG | 0.637475 | tig0016220:-273392 | Msa1358090:intron |
| ACAAATATGTCCAAAACCTG+AGG | 0.646913 | tig0016220:+272919 | None:intergenic |
| CTACTAACACTGCAAAGAGG+AGG | 0.649367 | tig0016220:-273198 | Msa1358090:CDS |
| AATAAATGAAACATGCCATG+TGG | 0.663478 | tig0016220:-274842 | Msa1358090:CDS |
| TCCAAAAGTAAGATACGATG+GGG | 0.666787 | tig0016220:-274776 | Msa1358090:CDS |
| AAATCAAGGGCAGAAAATGG+CGG | 0.672302 | tig0016220:-272747 | Msa1358090:three_prime_UTR |
| GAAGAAACAACTTTCCAGAG+TGG | 0.674984 | tig0016220:-272890 | Msa1358090:three_prime_UTR |
| AGAAGAATGAAATCACCAAG+AGG | 0.680362 | tig0016220:-273126 | Msa1358090:CDS |
| CTGCTACTAACACTGCAAAG+AGG | 0.683295 | tig0016220:-273201 | Msa1358090:CDS |
| TCTATATCAATCATATCACG+AGG | 0.737039 | tig0016220:+273253 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATACTTTTTATTATAAC+CGG | + | tig0016220:274226-274245 | None:intergenic | 10.0% |
| !!! | GTTATAATAAAAAGTATTAA+TGG | - | tig0016220:274226-274245 | Msa1358090:intron | 10.0% |
| !! | TTCTAATAATATTTATAAGA+TGG | + | tig0016220:274290-274309 | None:intergenic | 10.0% |
| !! | TAAAATATAATAGACAAATA+TGG | - | tig0016220:275248-275267 | Msa1358090:intron | 10.0% |
| !! | TTTATATTTGTTTAGTTATA+GGG | + | tig0016220:275602-275621 | None:intergenic | 10.0% |
| !! | ATTTATATTTGTTTAGTTAT+AGG | + | tig0016220:275603-275622 | None:intergenic | 10.0% |
| !! | TAAAAATAATATCAACTTGT+GGG | + | tig0016220:273207-273226 | None:intergenic | 15.0% |
| !! | ATAAAAATAATATCAACTTG+TGG | + | tig0016220:273208-273227 | None:intergenic | 15.0% |
| !!! | TTTTATGATTATGAATACTT+TGG | - | tig0016220:273222-273241 | Msa1358090:CDS | 15.0% |
| !! | TTTATGATTATGAATACTTT+GGG | - | tig0016220:273223-273242 | Msa1358090:CDS | 15.0% |
| !!! | ATATTAAAGAGCATAAAATT+AGG | + | tig0016220:273251-273270 | None:intergenic | 15.0% |
| !!! | TAATACTTTTTATTATAACC+GGG | + | tig0016220:274225-274244 | None:intergenic | 15.0% |
| !! | TTGTATATGATGTATAAATA+TGG | - | tig0016220:274411-274430 | Msa1358090:intron | 15.0% |
| !! | AACTTATATTTATATTGTTG+TGG | + | tig0016220:275309-275328 | None:intergenic | 15.0% |
| !!! | TTATTGGTTAATATTTATGT+TGG | + | tig0016220:275816-275835 | None:intergenic | 15.0% |
| !! | TCAAAATTTAGGTATATAAT+TGG | - | tig0016220:276015-276034 | Msa1358090:intron | 15.0% |
| !! | ATCGAGAAAGTAATAATAAT+CGG | + | tig0016220:272653-272672 | None:intergenic | 20.0% |
| !!! | TTTTATATGCAAAATCAATG+GGG | + | tig0016220:272864-272883 | None:intergenic | 20.0% |
| !!! | CTTTTATATGCAAAATCAAT+GGG | + | tig0016220:272865-272884 | None:intergenic | 20.0% |
| !!! | ACTTTTATATGCAAAATCAA+TGG | + | tig0016220:272866-272885 | None:intergenic | 20.0% |
| !!! | TCAAAATGATCAATTTTTCT+AGG | + | tig0016220:272894-272913 | None:intergenic | 20.0% |
| !! | TCAAATCAATTCAATTTCTA+GGG | + | tig0016220:272921-272940 | None:intergenic | 20.0% |
| !! | TTCAAATCAATTCAATTTCT+AGG | + | tig0016220:272922-272941 | None:intergenic | 20.0% |
| !! | TATCAAAAACCTAGATATTA+AGG | - | tig0016220:273424-273443 | Msa1358090:intron | 20.0% |
| !! | TAATATTTATAAGATGGCAT+GGG | + | tig0016220:274284-274303 | None:intergenic | 20.0% |
| !! | ATAATATTTATAAGATGGCA+TGG | + | tig0016220:274285-274304 | None:intergenic | 20.0% |
| !!! | TTGTATTTTCTTAATAGACT+CGG | - | tig0016220:274583-274602 | Msa1358090:CDS | 20.0% |
| !! | AAATAGTAGTATAAAAGAAG+AGG | + | tig0016220:274801-274820 | None:intergenic | 20.0% |
| !!! | CTTCTTTTATACTACTATTT+TGG | - | tig0016220:274801-274820 | Msa1358090:CDS | 20.0% |
| !!! | ATTTCATTCTTCTTTTTCTT+AGG | + | tig0016220:276335-276354 | None:intergenic | 20.0% |
| !! | ATAATAAAGATATATCCTTC+TGG | + | tig0016220:276514-276533 | None:intergenic | 20.0% |
| !! | AAACAAGATTCTTAAGTAAA+AGG | - | tig0016220:276639-276658 | Msa1358090:intron | 20.0% |
| !! | AACAAGATTCTTAAGTAAAA+GGG | - | tig0016220:276640-276659 | Msa1358090:intron | 20.0% |
| !!! | CGAAATTTGATTTTTGTGAT+CGG | + | tig0016220:272738-272757 | None:intergenic | 25.0% |
| !!! | GAATTGATTTGAAATTCAGA+TGG | - | tig0016220:272929-272948 | Msa1358090:three_prime_UTR | 25.0% |
| ! | AAAACAATCACAGTTAAAAG+TGG | - | tig0016220:273299-273318 | Msa1358090:CDS | 25.0% |
| ! | CTGAAATTGTAATTACGTTA+TGG | - | tig0016220:273386-273405 | Msa1358090:CDS | 25.0% |
| !!! | TATACAACTTAGGCTTTTTT+TGG | + | tig0016220:273559-273578 | None:intergenic | 25.0% |
| ! | AAAAAGCCTAAGTTGTATAT+AGG | - | tig0016220:273560-273579 | Msa1358090:intron | 25.0% |
| !!! | CTTATTTTCATAAACTCTTC+TGG | + | tig0016220:273720-273739 | None:intergenic | 25.0% |
| ! | TCAAATAAGTCTATCTAAAG+AGG | - | tig0016220:273825-273844 | Msa1358090:intron | 25.0% |
| !!! | CTTATTTTCATAAACTCTTC+TGG | + | tig0016220:273720-273739 | None:intergenic | 25.0% |
| ! | TCAAATAAGTCTATCTAAAG+AGG | - | tig0016220:273825-273844 | Msa1358090:intron | 25.0% |
| ! | GTTTAATTGGACTAATTTGA+TGG | - | tig0016220:274156-274175 | Msa1358090:intron | 25.0% |
| !! | TTTTATTATAACCGGGTTAA+TGG | + | tig0016220:274218-274237 | None:intergenic | 25.0% |
| ! | TTGTATAAAGTATAACCCAT+GGG | + | tig0016220:274341-274360 | None:intergenic | 25.0% |
| ! | ATTAGGAACAAAATAGCTTA+TGG | + | tig0016220:274451-274470 | None:intergenic | 25.0% |
| !!! | ATAAGCTATTTTGTTCCTAA+TGG | - | tig0016220:274450-274469 | Msa1358090:intron | 25.0% |
| !!! | AAGATGTTTTTGACAATATG+AGG | - | tig0016220:274664-274683 | Msa1358090:intron | 25.0% |
| ! | GGTAAATTAGATTTAGTAGT+TGG | - | tig0016220:274973-274992 | Msa1358090:intron | 25.0% |
| !!! | CATTCATTTTTCTGAAACAT+TGG | - | tig0016220:275013-275032 | Msa1358090:intron | 25.0% |
| ! | ACTATTTAAGCTTCTTTCAT+AGG | + | tig0016220:275187-275206 | None:intergenic | 25.0% |
| ! | TAAATAGTCAACACAATTGA+TGG | - | tig0016220:275199-275218 | Msa1358090:intron | 25.0% |
| ! | GATACCATATTGAAGTTATA+GGG | + | tig0016220:275379-275398 | None:intergenic | 25.0% |
| ! | ATATTTGGGAATAATAAGCT+GGG | + | tig0016220:275446-275465 | None:intergenic | 25.0% |
| ! | TATATTTGGGAATAATAAGC+TGG | + | tig0016220:275447-275466 | None:intergenic | 25.0% |
| ! | GTTATTCTTATAAATGCATG+GGG | + | tig0016220:275580-275599 | None:intergenic | 25.0% |
| ! | GGTTATTCTTATAAATGCAT+GGG | + | tig0016220:275581-275600 | None:intergenic | 25.0% |
| !!! | CTGTTTAAGCATGTTTTTAT+TGG | - | tig0016220:275907-275926 | Msa1358090:intron | 25.0% |
| ! | TCATAAAGCTTTCAGTTTAT+AGG | - | tig0016220:276058-276077 | Msa1358090:intron | 25.0% |
| ! | TGATATGATTGATATAGAGA+GGG | - | tig0016220:276220-276239 | Msa1358090:intron | 25.0% |
| !! | TTCTTCTTTTTCTTAGGTTT+AGG | + | tig0016220:276329-276348 | None:intergenic | 25.0% |
| ! | AATTCTCGTAGTTTATTTAC+TGG | - | tig0016220:276449-276468 | Msa1358090:CDS | 25.0% |
| !! | TTAAGAATCTTGTTTAATCC+TGG | + | tig0016220:276634-276653 | None:intergenic | 25.0% |
| !! | TTATATTGTTTGTTGCCTAT+TGG | - | tig0016220:276830-276849 | Msa1358090:intron | 25.0% |
| !! | GAGACTTCCATATAATTTTA+TGG | - | tig0016220:276863-276882 | Msa1358090:intron | 25.0% |
| ! | TTCAGGACCATAAAATTATA+TGG | + | tig0016220:276873-276892 | None:intergenic | 25.0% |
| ATGCAGAAAAAGAAAGTCTT+TGG | + | tig0016220:272529-272548 | None:intergenic | 30.0% | |
| !! | AGATTTTTCGATATGGAAGA+AGG | + | tig0016220:272553-272572 | None:intergenic | 30.0% |
| ! | TTGATTTTTGTGATCGGAAA+TGG | + | tig0016220:272732-272751 | None:intergenic | 30.0% |
| GAACAATTCAATCAAAGAGA+GGG | + | tig0016220:272765-272784 | None:intergenic | 30.0% | |
| AGAACAATTCAATCAAAGAG+AGG | + | tig0016220:272766-272785 | None:intergenic | 30.0% | |
| CTAATGCATTGAAACTTTCT+TGG | + | tig0016220:272823-272842 | None:intergenic | 30.0% | |
| ! | CGTTATTGATCTTCTTTTTG+AGG | - | tig0016220:273148-273167 | Msa1358090:CDS | 30.0% |
| TTGTAATTACGTTATGGTCA+TGG | - | tig0016220:273392-273411 | Msa1358090:intron | 30.0% | |
| GTATTCTGACCTTAATATCT+AGG | + | tig0016220:273436-273455 | None:intergenic | 30.0% | |
| GACAATGCATAAAATATGCA+TGG | - | tig0016220:273509-273528 | Msa1358090:intron | 30.0% | |
| ATGCATAAAATATGCATGGT+CGG | - | tig0016220:273513-273532 | Msa1358090:intron | 30.0% | |
| ! | TTAAGTTGCTTATCCATACA+GGG | + | tig0016220:273586-273605 | None:intergenic | 30.0% |
| ! | ATTAAGTTGCTTATCCATAC+AGG | + | tig0016220:273587-273606 | None:intergenic | 30.0% |
| AATAAGCTGAAAACACCTTA+TGG | - | tig0016220:273734-273753 | Msa1358090:intron | 30.0% | |
| AAGTACTAGTGAAACTGTTT+GGG | + | tig0016220:273789-273808 | None:intergenic | 30.0% | |
| TAAGTACTAGTGAAACTGTT+TGG | + | tig0016220:273790-273809 | None:intergenic | 30.0% | |
| AATAAGCTGAAAACACCTTA+TGG | - | tig0016220:273734-273753 | Msa1358090:intron | 30.0% | |
| AAGTACTAGTGAAACTGTTT+GGG | + | tig0016220:273789-273808 | None:intergenic | 30.0% | |
| TAAGTACTAGTGAAACTGTT+TGG | + | tig0016220:273790-273809 | None:intergenic | 30.0% | |
| AGAAGAAACAATCTCAGTAT+AGG | + | tig0016220:274118-274137 | None:intergenic | 30.0% | |
| ! | ACTAATTTGATGGATGACTT+TGG | - | tig0016220:274166-274185 | Msa1358090:intron | 30.0% |
| GAAGAAACTACTTGTACTTT+AGG | - | tig0016220:274307-274326 | Msa1358090:intron | 30.0% | |
| CTTGTATAAAGTATAACCCA+TGG | + | tig0016220:274342-274361 | None:intergenic | 30.0% | |
| TGTTGCCATATATACTTACT+TGG | - | tig0016220:274551-274570 | Msa1358090:CDS | 30.0% | |
| AAGCACCAAGTAAGTATATA+TGG | + | tig0016220:274559-274578 | None:intergenic | 30.0% | |
| AATAAATGAAACATGCCATG+TGG | - | tig0016220:274626-274645 | Msa1358090:intron | 30.0% | |
| AATCCAAAAGTAAGATACGA+TGG | - | tig0016220:274690-274709 | Msa1358090:intron | 30.0% | |
| ATCCAAAAGTAAGATACGAT+GGG | - | tig0016220:274691-274710 | Msa1358090:intron | 30.0% | |
| TGAACAAAATTGAAAGACGA+AGG | + | tig0016220:274763-274782 | None:intergenic | 30.0% | |
| !! | CATTGCTGTTATTGACTTAA+AGG | - | tig0016220:274919-274938 | Msa1358090:intron | 30.0% |
| ATAGTTGCTCAATAAGATCA+AGG | + | tig0016220:275078-275097 | None:intergenic | 30.0% | |
| !! | ATAGTGACTGGTTAGTATTT+TGG | + | tig0016220:275163-275182 | None:intergenic | 30.0% |
| TATATGCATAAGATGTTGCA+AGG | - | tig0016220:275223-275242 | Msa1358090:intron | 30.0% | |
| ATATGCATAAGATGTTGCAA+GGG | - | tig0016220:275224-275243 | Msa1358090:intron | 30.0% | |
| ! | GTTAGTCTATCAGATACAAA+GGG | + | tig0016220:275357-275376 | None:intergenic | 30.0% |
| CTAACCCTATAACTTCAATA+TGG | - | tig0016220:275372-275391 | Msa1358090:intron | 30.0% | |
| CGATACCATATTGAAGTTAT+AGG | + | tig0016220:275380-275399 | None:intergenic | 30.0% | |
| GTATATGGGATAAATAACAC+TGG | + | tig0016220:275415-275434 | None:intergenic | 30.0% | |
| ATTGTCTATAGGATAAGTCA+GGG | + | tig0016220:275476-275495 | None:intergenic | 30.0% | |
| TTAGAGCTTAGATTGTCTAT+AGG | + | tig0016220:275487-275506 | None:intergenic | 30.0% | |
| ! | GACATTTCAATCATGTTTTG+TGG | - | tig0016220:275521-275540 | Msa1358090:intron | 30.0% |
| GGGTTATTCTTATAAATGCA+TGG | + | tig0016220:275582-275601 | None:intergenic | 30.0% | |
| !! | ACCAATAAAAGAGTGTGTTT+TGG | - | tig0016220:275828-275847 | Msa1358090:intron | 30.0% |
| ! | TCCAAAACACACTCTTTTAT+TGG | + | tig0016220:275832-275851 | None:intergenic | 30.0% |
| !!! | TGGTGAGTGATATTTTTTAG+AGG | - | tig0016220:275982-276001 | Msa1358090:intron | 30.0% |
| !!! | TGAGTGATATTTTTTAGAGG+TGG | - | tig0016220:275985-276004 | Msa1358090:intron | 30.0% |
| GTGGTCAATAGTCAAAATTT+AGG | - | tig0016220:276004-276023 | Msa1358090:intron | 30.0% | |
| !! | TTCAGTTTATAGGCTTTGAA+AGG | - | tig0016220:276068-276087 | Msa1358090:intron | 30.0% |
| TCTATATCAATCATATCACG+AGG | + | tig0016220:276218-276237 | None:intergenic | 30.0% | |
| GTGATATGATTGATATAGAG+AGG | - | tig0016220:276219-276238 | Msa1358090:intron | 30.0% | |
| ATTCTTAAGTAAAAGGGCAA+AGG | - | tig0016220:276646-276665 | Msa1358090:intron | 30.0% | |
| AGGTCGTATCATTTAAATCA+AGG | - | tig0016220:276707-276726 | Msa1358090:intron | 30.0% | |
| GGTCGTATCATTTAAATCAA+GGG | - | tig0016220:276708-276727 | Msa1358090:intron | 30.0% | |
| TTTAAATCAAGGGCAGAAAA+TGG | - | tig0016220:276718-276737 | Msa1358090:intron | 30.0% | |
| CATTATTCATTTCCAGAAGT+AGG | + | tig0016220:276808-276827 | None:intergenic | 30.0% | |
| !! | ATTACATCACTCTGAAATTC+AGG | + | tig0016220:276890-276909 | None:intergenic | 30.0% |
| !! | TCGTCACAGATTTTTCGATA+TGG | + | tig0016220:272560-272579 | None:intergenic | 35.0% |
| ATGTTGAAGTCTCTCTGTAT+CGG | + | tig0016220:273084-273103 | None:intergenic | 35.0% | |
| ! | CTTAGTGTTGCTGAAAATTG+TGG | - | tig0016220:273342-273361 | Msa1358090:CDS | 35.0% |
| TGCATAAAATATGCATGGTC+GGG | - | tig0016220:273514-273533 | Msa1358090:intron | 35.0% | |
| !!! | ACTTAGGCTTTTTTTGGTAG+TGG | + | tig0016220:273553-273572 | None:intergenic | 35.0% |
| ACACCTTATGGACATATCAT+TGG | - | tig0016220:273746-273765 | Msa1358090:intron | 35.0% | |
| ACACCTTATGGACATATCAT+TGG | - | tig0016220:273746-273765 | Msa1358090:intron | 35.0% | |
| TGGTCATATTATTTCCTCAC+AGG | - | tig0016220:274186-274205 | Msa1358090:intron | 35.0% | |
| GGTCATATTATTTCCTCACA+GGG | - | tig0016220:274187-274206 | Msa1358090:intron | 35.0% | |
| TATTATAACCGGGTTAATGG+TGG | + | tig0016220:274215-274234 | None:intergenic | 35.0% | |
| CATGGGACTATAAATTTGCA+CGG | + | tig0016220:274267-274286 | None:intergenic | 35.0% | |
| TCAAAATCACGTTGCAGTTT+AGG | - | tig0016220:274369-274388 | Msa1358090:intron | 35.0% | |
| TTCCTAATGGTTATTCTGAG+TGG | - | tig0016220:274463-274482 | Msa1358090:intron | 35.0% | |
| ! | ATTTTCTTAATAGACTCGGC+AGG | - | tig0016220:274587-274606 | Msa1358090:CDS | 35.0% |
| TCCAAAAGTAAGATACGATG+GGG | - | tig0016220:274692-274711 | Msa1358090:intron | 35.0% | |
| TATAGTCGAAACATGCTCTT+CGG | - | tig0016220:274852-274871 | Msa1358090:CDS | 35.0% | |
| CAATAAGATCAAGGTGGTAT+GGG | + | tig0016220:275069-275088 | None:intergenic | 35.0% | |
| TCAATAAGATCAAGGTGGTA+TGG | + | tig0016220:275070-275089 | None:intergenic | 35.0% | |
| AAATTCATCGTGCACATGAA+AGG | + | tig0016220:275122-275141 | None:intergenic | 35.0% | |
| ! | TCATGTGCACGATGAATTTT+TGG | - | tig0016220:275123-275142 | Msa1358090:intron | 35.0% |
| ! | CATGTGCACGATGAATTTTT+GGG | - | tig0016220:275124-275143 | Msa1358090:intron | 35.0% |
| TATTGTTGTGGATGATGAGT+TGG | + | tig0016220:275297-275316 | None:intergenic | 35.0% | |
| !! | GGTTAGTCTATCAGATACAA+AGG | + | tig0016220:275358-275377 | None:intergenic | 35.0% |
| ! | ACTTCAATATGGTATCGAAG+TGG | - | tig0016220:275383-275402 | Msa1358090:intron | 35.0% |
| GATTGTCTATAGGATAAGTC+AGG | + | tig0016220:275477-275496 | None:intergenic | 35.0% | |
| ATTCTTATAAATGCATGGGG+AGG | + | tig0016220:275577-275596 | None:intergenic | 35.0% | |
| ATTATTCCTACCCAAAGTCT+CGG | - | tig0016220:275643-275662 | Msa1358090:intron | 35.0% | |
| AGAGTGTAACTACAAAGAGA+GGG | + | tig0016220:275707-275726 | None:intergenic | 35.0% | |
| TGGTCCCACTAAATTCATAT+GGG | + | tig0016220:275796-275815 | None:intergenic | 35.0% | |
| TTGGTCCCACTAAATTCATA+TGG | + | tig0016220:275797-275816 | None:intergenic | 35.0% | |
| !! | AGTTTATAGGCTTTGAAAGG+TGG | - | tig0016220:276071-276090 | Msa1358090:intron | 35.0% |
| !!! | ACCTAAAACAGCTTTTTCGT+GGG | - | tig0016220:276183-276202 | Msa1358090:intron | 35.0% |
| !!! | CAGGCTTCATTCCATTTTTT+TGG | + | tig0016220:276250-276269 | None:intergenic | 35.0% |
| ! | CTTTTTCTTAGGTTTAGGCT+TGG | + | tig0016220:276324-276343 | None:intergenic | 35.0% |
| AGAAGAATGAAATCACCAAG+AGG | - | tig0016220:276342-276361 | Msa1358090:CDS | 35.0% | |
| !! | TTCAAGTTCTGAAAAAGCTC+CGG | + | tig0016220:276392-276411 | None:intergenic | 35.0% |
| GATATATCCTTCTGGACAAT+GGG | + | tig0016220:276506-276525 | None:intergenic | 35.0% | |
| AGATATATCCTTCTGGACAA+TGG | + | tig0016220:276507-276526 | None:intergenic | 35.0% | |
| ACAAATATGTCCAAAACCTG+AGG | + | tig0016220:276552-276571 | None:intergenic | 35.0% | |
| GATGACACATTGCAAATTCA+GGG | - | tig0016220:276600-276619 | Msa1358090:intron | 35.0% | |
| ! | GAATCTTGTTTAATCCTGGA+AGG | + | tig0016220:276630-276649 | None:intergenic | 35.0% |
| TTAGAAAAACCACCAGAAGA+GGG | + | tig0016220:276682-276701 | None:intergenic | 35.0% | |
| TTTAGAAAAACCACCAGAAG+AGG | + | tig0016220:276683-276702 | None:intergenic | 35.0% | |
| ! | TGGTGGTTTTTCTAAACTCA+AGG | - | tig0016220:276687-276706 | Msa1358090:intron | 35.0% |
| ! | AATGACTAAGTTGGCTATCT+TGG | + | tig0016220:276748-276767 | None:intergenic | 35.0% |
| ACTCTGCTAAATGACTAAGT+TGG | + | tig0016220:276757-276776 | None:intergenic | 35.0% | |
| GTCTCTTTATTCTCACCAAT+AGG | + | tig0016220:276848-276867 | None:intergenic | 35.0% | |
| AATCTGTGACGAACTCATCA+CGG | - | tig0016220:272568-272587 | Msa1358090:three_prime_UTR | 40.0% | |
| TGATCGGAAATGGTGAAAAG+GGG | + | tig0016220:272722-272741 | None:intergenic | 40.0% | |
| GTGATCGGAAATGGTGAAAA+GGG | + | tig0016220:272723-272742 | None:intergenic | 40.0% | |
| TGTGATCGGAAATGGTGAAA+AGG | + | tig0016220:272724-272743 | None:intergenic | 40.0% | |
| GAAATTCAGATGGCGTTACA+AGG | - | tig0016220:272939-272958 | Msa1358090:three_prime_UTR | 40.0% | |
| ! | GTATCGGTCGAAAATTTGAC+CGG | + | tig0016220:273068-273087 | None:intergenic | 40.0% |
| AGTATTCGTAAAGCTCCTGT+TGG | - | tig0016220:273110-273129 | Msa1358090:CDS | 40.0% | |
| GCATAAAATATGCATGGTCG+GGG | - | tig0016220:273515-273534 | Msa1358090:intron | 40.0% | |
| ACAGGGCCTATATACAACTT+AGG | + | tig0016220:273569-273588 | None:intergenic | 40.0% | |
| AGTTGTATATAGGCCCTGTA+TGG | - | tig0016220:273570-273589 | Msa1358090:intron | 40.0% | |
| CAGCCAATGATATGTCCATA+AGG | + | tig0016220:273752-273771 | None:intergenic | 40.0% | |
| CAGCCAATGATATGTCCATA+AGG | + | tig0016220:273752-273771 | None:intergenic | 40.0% | |
| GTATAGGTACCTCTTGTCAT+AGG | + | tig0016220:274102-274121 | None:intergenic | 40.0% | |
| GGACTATAAATTTGCACGGA+AGG | + | tig0016220:274263-274282 | None:intergenic | 40.0% | |
| !! | ACTTTAGGTTCTAAAGCCCA+TGG | - | tig0016220:274322-274341 | Msa1358090:intron | 40.0% |
| !! | CTTTAGGTTCTAAAGCCCAT+GGG | - | tig0016220:274323-274342 | Msa1358090:intron | 40.0% |
| CACCACTCAGAATAACCATT+AGG | + | tig0016220:274468-274487 | None:intergenic | 40.0% | |
| ! | ATAAACCTTTTCAGCCAACC+CGG | - | tig0016220:274499-274518 | Msa1358090:intron | 40.0% |
| !! | TGTTAGCTTTCATGTCCACA+TGG | + | tig0016220:274644-274663 | None:intergenic | 40.0% |
| ! | TCCCCATCGTATCTTACTTT+TGG | + | tig0016220:274696-274715 | None:intergenic | 40.0% |
| TGGGGAAAGATTCTCTTACA+AGG | - | tig0016220:274710-274729 | Msa1358090:intron | 40.0% | |
| ATAGTCGAAACATGCTCTTC+GGG | - | tig0016220:274853-274872 | Msa1358090:CDS | 40.0% | |
| ! | CTTCTGGAAATTTGCGTATC+AGG | + | tig0016220:274898-274917 | None:intergenic | 40.0% |
| CTGATACGCAAATTTCCAGA+AGG | - | tig0016220:274896-274915 | Msa1358090:intron | 40.0% | |
| TCAATAACAGCAATGCCTTC+TGG | + | tig0016220:274914-274933 | None:intergenic | 40.0% | |
| GGATTCATACCCAACTGTAA+TGG | - | tig0016220:274940-274959 | Msa1358090:intron | 40.0% | |
| TTCATACCCAACTGTAATGG+AGG | - | tig0016220:274943-274962 | Msa1358090:intron | 40.0% | |
| GTAAGTCCTCCATTACAGTT+GGG | + | tig0016220:274952-274971 | None:intergenic | 40.0% | |
| TGTAAGTCCTCCATTACAGT+TGG | + | tig0016220:274953-274972 | None:intergenic | 40.0% | |
| ! | AACTGTAATGGAGGACTTAC+AGG | - | tig0016220:274952-274971 | Msa1358090:intron | 40.0% |
| GTTGCTCAATAAGATCAAGG+TGG | + | tig0016220:275075-275094 | None:intergenic | 40.0% | |
| GCACATGAAAGGAATCAAGT+TGG | + | tig0016220:275111-275130 | None:intergenic | 40.0% | |
| TCTTTCATAGGCATAGTGAC+TGG | + | tig0016220:275175-275194 | None:intergenic | 40.0% | |
| AGTCTATCAGATACAAAGGG+AGG | + | tig0016220:275354-275373 | None:intergenic | 40.0% | |
| GCTGGGACAAGATTGTATAT+GGG | + | tig0016220:275429-275448 | None:intergenic | 40.0% | |
| AGCTGGGACAAGATTGTATA+TGG | + | tig0016220:275430-275449 | None:intergenic | 40.0% | |
| GTCAGGGACAGACTATATTT+GGG | + | tig0016220:275460-275479 | None:intergenic | 40.0% | |
| AGTCAGGGACAGACTATATT+TGG | + | tig0016220:275461-275480 | None:intergenic | 40.0% | |
| ! | GAGAGTGTAACTACAAAGAG+AGG | + | tig0016220:275708-275727 | None:intergenic | 40.0% |
| TGGGTCCCATATGAATTTAG+TGG | - | tig0016220:275788-275807 | Msa1358090:intron | 40.0% | |
| GGGTCCCATATGAATTTAGT+GGG | - | tig0016220:275789-275808 | Msa1358090:intron | 40.0% | |
| GTCTTCCTGTGAATCAAAGT+TGG | + | tig0016220:276117-276136 | None:intergenic | 40.0% | |
| !! | CACTTTAGGATCATTAGGGT+AGG | + | tig0016220:276144-276163 | None:intergenic | 40.0% |
| !! | TGGGCACTTTAGGATCATTA+GGG | + | tig0016220:276148-276167 | None:intergenic | 40.0% |
| !! | ATGGGCACTTTAGGATCATT+AGG | + | tig0016220:276149-276168 | None:intergenic | 40.0% |
| ! | TGATCCTAAAGTGCCCATTA+AGG | - | tig0016220:276151-276170 | Msa1358090:intron | 40.0% |
| AGGTCATCATCCACCTTAAT+GGG | + | tig0016220:276167-276186 | None:intergenic | 40.0% | |
| TAGGTCATCATCCACCTTAA+TGG | + | tig0016220:276168-276187 | None:intergenic | 40.0% | |
| !!! | GACCTAAAACAGCTTTTTCG+TGG | - | tig0016220:276182-276201 | Msa1358090:intron | 40.0% |
| !! | TCCCACGAAAAAGCTGTTTT+AGG | + | tig0016220:276187-276206 | None:intergenic | 40.0% |
| GAGAGGGATCTCCAAAAAAA+TGG | - | tig0016220:276236-276255 | Msa1358090:intron | 40.0% | |
| CACGCTGAGTTACTTAAATC+AGG | + | tig0016220:276420-276439 | None:intergenic | 40.0% | |
| TTAAGTAACTCAGCGTGTGT+TGG | - | tig0016220:276423-276442 | Msa1358090:CDS | 40.0% | |
| TAAGTAACTCAGCGTGTGTT+GGG | - | tig0016220:276424-276443 | Msa1358090:CDS | 40.0% | |
| ! | TTGTATTAGCTTACTGCCTC+AGG | - | tig0016220:276533-276552 | Msa1358090:intron | 40.0% |
| GAAGAAACAACTTTCCAGAG+TGG | - | tig0016220:276578-276597 | Msa1358090:intron | 40.0% | |
| GGATGACACATTGCAAATTC+AGG | - | tig0016220:276599-276618 | Msa1358090:intron | 40.0% | |
| ! | AAATTCAGGGTATTCCTTCC+AGG | - | tig0016220:276613-276632 | Msa1358090:intron | 40.0% |
| CTTAAGTAAAAGGGCAAAGG+TGG | - | tig0016220:276649-276668 | Msa1358090:intron | 40.0% | |
| TAGAAAAACCACCAGAAGAG+GGG | + | tig0016220:276681-276700 | None:intergenic | 40.0% | |
| AAATCAAGGGCAGAAAATGG+CGG | - | tig0016220:276721-276740 | Msa1358090:intron | 40.0% | |
| ACATTGTCCCTCTCATTCTT+AGG | - | tig0016220:276781-276800 | Msa1358090:intron | 40.0% | |
| AGTAGGACCTAAGAATGAGA+GGG | + | tig0016220:276791-276810 | None:intergenic | 40.0% | |
| AAGTAGGACCTAAGAATGAG+AGG | + | tig0016220:276792-276811 | None:intergenic | 40.0% | |
| TCATTCTTAGGTCCTACTTC+TGG | - | tig0016220:276793-276812 | Msa1358090:intron | 40.0% | |
| ATCGAGCATAGCAGCAAACA+AGG | - | tig0016220:273010-273029 | Msa1358090:three_prime_UTR | 45.0% | |
| CTGACGAGGACATACAACTT+AGG | + | tig0016220:273471-273490 | None:intergenic | 45.0% | |
| !!! | AGGCTTTTTTTGGTAGTGGC+CGG | + | tig0016220:273549-273568 | None:intergenic | 45.0% |
| GCAATTCCTCCTATGACAAG+AGG | - | tig0016220:274090-274109 | Msa1358090:intron | 45.0% | |
| TAGGTACCTCTTGTCATAGG+AGG | + | tig0016220:274099-274118 | None:intergenic | 45.0% | |
| ATACCCATCAACCACAAGAG+AGG | + | tig0016220:274526-274545 | None:intergenic | 45.0% | |
| ! | AGAGAGGGTGCATATACACT+TGG | + | tig0016220:275692-275711 | None:intergenic | 45.0% |
| ACGAGTCCTACCAATTCTTG+TGG | - | tig0016220:275768-275787 | Msa1358090:intron | 45.0% | |
| CGAGTCCTACCAATTCTTGT+GGG | - | tig0016220:275769-275788 | Msa1358090:intron | 45.0% | |
| CATATGGGACCCACAAGAAT+TGG | + | tig0016220:275781-275800 | None:intergenic | 45.0% | |
| TATACTCAGATGACTCGCTG+TGG | - | tig0016220:275962-275981 | Msa1358090:intron | 45.0% | |
| !! | TATAGGCTTTGAAAGGTGGC+AGG | - | tig0016220:276075-276094 | Msa1358090:intron | 45.0% |
| !! | ATAGGCTTTGAAAGGTGGCA+GGG | - | tig0016220:276076-276095 | Msa1358090:intron | 45.0% |
| GCTGTCCAACTTTGATTCAC+AGG | - | tig0016220:276109-276128 | Msa1358090:intron | 45.0% | |
| ! | TCCTAAAGTGCCCATTAAGG+TGG | - | tig0016220:276154-276173 | Msa1358090:intron | 45.0% |
| ! | TCCACCTTAATGGGCACTTT+AGG | + | tig0016220:276158-276177 | None:intergenic | 45.0% |
| CTCTTTGCAGTGTTAGTAGC+AGG | + | tig0016220:276269-276288 | None:intergenic | 45.0% | |
| CTGCTACTAACACTGCAAAG+AGG | - | tig0016220:276267-276286 | Msa1358090:intron | 45.0% | |
| CTACTAACACTGCAAAGAGG+AGG | - | tig0016220:276270-276289 | Msa1358090:intron | 45.0% | |
| ATTAGTCAGCTTGGTCCTCT+TGG | + | tig0016220:276360-276379 | None:intergenic | 45.0% | |
| AAGATGGGCATTAGTCAGCT+TGG | + | tig0016220:276369-276388 | None:intergenic | 45.0% | |
| CTGAAAAAGCTCCGGAAGAT+GGG | + | tig0016220:276384-276403 | None:intergenic | 45.0% | |
| TCTGAAAAAGCTCCGGAAGA+TGG | + | tig0016220:276385-276404 | None:intergenic | 45.0% | |
| GAGATTTCCCATTGTCCAGA+AGG | - | tig0016220:276496-276515 | Msa1358090:CDS | 45.0% | |
| ! | TAGCTTACTGCCTCAGGTTT+TGG | - | tig0016220:276539-276558 | Msa1358090:intron | 45.0% |
| TTGCAATGTGTCATCCACTC+TGG | + | tig0016220:276595-276614 | None:intergenic | 45.0% | |
| !! | TTAAACATTATTAATTTATT+GGG | + | tig0016220:274142-274161 | None:intergenic | 5.0% |
| !! | ATTAAACATTATTAATTTAT+TGG | + | tig0016220:274143-274162 | None:intergenic | 5.0% |
| !! | ATAAATTAATAATGTTTAAT+TGG | - | tig0016220:274143-274162 | Msa1358090:intron | 5.0% |
| TGTGCCAAATGCTCTTGCTC+CGG | - | tig0016220:273046-273065 | Msa1358090:three_prime_UTR | 50.0% | |
| !! | TTGACCGGAGCAAGAGCATT+TGG | + | tig0016220:273053-273072 | None:intergenic | 50.0% |
| CGCTTCATTTGAGCTCCAAC+AGG | + | tig0016220:273128-273147 | None:intergenic | 50.0% | |
| GTTGTATGTCCTCGTCAGCT+TGG | - | tig0016220:273473-273492 | Msa1358090:intron | 50.0% | |
| TCAGCTTGGCTCAGTTGGTT+GGG | - | tig0016220:273487-273506 | Msa1358090:intron | 50.0% | |
| !!! | GCTTTTTTTGGTAGTGGCCG+GGG | + | tig0016220:273547-273566 | None:intergenic | 50.0% |
| !!! | GGCTTTTTTTGGTAGTGGCC+GGG | + | tig0016220:273548-273567 | None:intergenic | 50.0% |
| !! | GTTAATGGTGGATCCCTGTG+AGG | + | tig0016220:274203-274222 | None:intergenic | 50.0% |
| ACAGGGATCCACCATTAACC+CGG | - | tig0016220:274204-274223 | Msa1358090:intron | 50.0% | |
| ATCAACCACAAGAGAGGTCC+GGG | + | tig0016220:274520-274539 | None:intergenic | 50.0% | |
| CATCAACCACAAGAGAGGTC+CGG | + | tig0016220:274521-274540 | None:intergenic | 50.0% | |
| GGACCTCTCTTGTGGTTGAT+GGG | - | tig0016220:274520-274539 | Msa1358090:CDS | 50.0% | |
| ! | GACTCGGCAGGCTTTAACAT+TGG | - | tig0016220:274599-274618 | Msa1358090:CDS | 50.0% |
| AGGGAGGAACGTGAATACTC+AGG | + | tig0016220:275338-275357 | None:intergenic | 50.0% | |
| CTCAGAGAAGCCGAGACTTT+GGG | + | tig0016220:275656-275675 | None:intergenic | 50.0% | |
| TCTCAGAGAAGCCGAGACTT+TGG | + | tig0016220:275657-275676 | None:intergenic | 50.0% | |
| !! | CTTCTCTGAGACAAGGCACA+AGG | - | tig0016220:275666-275685 | Msa1358090:intron | 50.0% |
| TGGGACCCACAAGAATTGGT+AGG | + | tig0016220:275777-275796 | None:intergenic | 50.0% | |
| TGAAAGGTGGCAGGGAGATT+TGG | - | tig0016220:276084-276103 | Msa1358090:intron | 50.0% | |
| ! | AGGAGTGCAGCACAAATGGA+AGG | - | tig0016220:276290-276309 | Msa1358090:intron | 50.0% |
| GCTGACTAATGCCCATCTTC+CGG | - | tig0016220:276370-276389 | Msa1358090:CDS | 50.0% | |
| GTCAGCTTGGCTCAGTTGGT+TGG | - | tig0016220:273486-273505 | Msa1358090:intron | 55.0% | |
| CGGACCTCTCTTGTGGTTGA+TGG | - | tig0016220:274519-274538 | Msa1358090:CDS | 55.0% | |
| GAGAAGCCGAGACTTTGGGT+AGG | + | tig0016220:275652-275671 | None:intergenic | 55.0% | |
| !! | GTCTCGGCTTCTCTGAGACA+AGG | - | tig0016220:275659-275678 | Msa1358090:intron | 55.0% |
| ! | GAGGAGGAGTGCAGCACAAA+TGG | - | tig0016220:276286-276305 | Msa1358090:intron | 55.0% |
| AACCACCAGAAGAGGGGTTC+TGG | + | tig0016220:276675-276694 | None:intergenic | 55.0% | |
| CCAACTGAGCCAAGCTGACG+AGG | + | tig0016220:273485-273504 | None:intergenic | 60.0% | |
| CCTCGTCAGCTTGGCTCAGT+TGG | - | tig0016220:273482-273501 | Msa1358090:intron | 60.0% | |
| CATGGTCGGGGTTCAAACCC+CGG | - | tig0016220:273527-273546 | Msa1358090:intron | 60.0% | |
| !! | GAGGTCCGGGTTGGCTGAAA+AGG | + | tig0016220:274507-274526 | None:intergenic | 60.0% |
| ACCACAAGAGAGGTCCGGGT+TGG | + | tig0016220:274516-274535 | None:intergenic | 60.0% | |
| GCCAACCCGGACCTCTCTTG+TGG | - | tig0016220:274512-274531 | Msa1358090:intron | 65.0% | |
| GGTGGCCAGAACCCCTCTTC+TGG | - | tig0016220:276667-276686 | Msa1358090:intron | 65.0% | |
| GGCCAGAACCCCTCTTCTGG+TGG | - | tig0016220:276670-276689 | Msa1358090:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0016220 | gene | 272516 | 276974 | 272516 | ID=Msa1358090;Name=Msa1358090 |
| tig0016220 | mRNA | 272516 | 276974 | 272516 | ID=Msa1358090-mRNA-1;Parent=Msa1358090;Name=Msa1358090-mRNA-1;_AED=0.26;_eAED=0.26;_QI=74|1|1|1|0.75|0.8|5|553|270 |
| tig0016220 | exon | 272516 | 273410 | 272516 | ID=Msa1358090-mRNA-1:exon:10647;Parent=Msa1358090-mRNA-1 |
| tig0016220 | exon | 274517 | 274633 | 274517 | ID=Msa1358090-mRNA-1:exon:10646;Parent=Msa1358090-mRNA-1 |
| tig0016220 | exon | 274759 | 274890 | 274759 | ID=Msa1358090-mRNA-1:exon:10645;Parent=Msa1358090-mRNA-1 |
| tig0016220 | exon | 276321 | 276542 | 276321 | ID=Msa1358090-mRNA-1:exon:10644;Parent=Msa1358090-mRNA-1 |
| tig0016220 | exon | 276901 | 276974 | 276901 | ID=Msa1358090-mRNA-1:exon:10643;Parent=Msa1358090-mRNA-1 |
| tig0016220 | five_prime_UTR | 276901 | 276974 | 276901 | ID=Msa1358090-mRNA-1:five_prime_utr;Parent=Msa1358090-mRNA-1 |
| tig0016220 | CDS | 276321 | 276542 | 276321 | ID=Msa1358090-mRNA-1:cds;Parent=Msa1358090-mRNA-1 |
| tig0016220 | CDS | 274759 | 274890 | 274759 | ID=Msa1358090-mRNA-1:cds;Parent=Msa1358090-mRNA-1 |
| tig0016220 | CDS | 274517 | 274633 | 274517 | ID=Msa1358090-mRNA-1:cds;Parent=Msa1358090-mRNA-1 |
| tig0016220 | CDS | 273069 | 273410 | 273069 | ID=Msa1358090-mRNA-1:cds;Parent=Msa1358090-mRNA-1 |
| tig0016220 | three_prime_UTR | 272516 | 273068 | 272516 | ID=Msa1358090-mRNA-1:three_prime_utr;Parent=Msa1358090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
