Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279100 | RHN39945.1 | 51.916 | 287 | 74 | 9 | 243 | 513 | 16 | 254 | 3.30e-48 | 181 |
| Msa1279100 | RHN39945.1 | 68.548 | 248 | 54 | 3 | 1 | 248 | 3 | 226 | 5.27e-84 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279100 | sp|P52581|IFRH_LUPAL | 67.416 | 89 | 29 | 0 | 469 | 557 | 224 | 312 | 4.13e-34 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279100 | A0A396GMP0 | 51.916 | 287 | 74 | 9 | 243 | 513 | 16 | 254 | 1.58e-48 | 181 |
| Msa1279100 | A0A396GMP0 | 68.548 | 248 | 54 | 3 | 1 | 248 | 3 | 226 | 2.51e-84 | 275 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001830 | Msa1279100 | 0.804815 | 1.802107e-49 | -8.615850e-47 |
| Msa0077370 | Msa1279100 | 0.800179 | 1.626914e-48 | -8.615850e-47 |
| Msa0713060 | Msa1279100 | 0.841171 | 5.585221e-58 | -8.615850e-47 |
| Msa0732050 | Msa1279100 | 0.807694 | 4.460463e-50 | -8.615850e-47 |
| Msa0832620 | Msa1279100 | 0.803956 | 2.721701e-49 | -8.615850e-47 |
| Msa0196670 | Msa1279100 | 0.801746 | 7.787137e-49 | -8.615850e-47 |
| Msa1252810 | Msa1279100 | 0.846705 | 1.836671e-59 | -8.615850e-47 |
| Msa1272010 | Msa1279100 | 0.807844 | 4.145051e-50 | -8.615850e-47 |
| Msa1279100 | Msa1358090 | 0.807762 | 4.314325e-50 | -8.615850e-47 |
| Msa1023310 | Msa1279100 | 0.805683 | 1.185891e-49 | -8.615850e-47 |
| Msa1062040 | Msa1279100 | 0.813099 | 3.037578e-51 | -8.615850e-47 |
| Msa0276100 | Msa1279100 | 0.827988 | 1.154349e-54 | -8.615850e-47 |
| Msa1107200 | Msa1279100 | 0.802463 | 5.543769e-49 | -8.615850e-47 |
| Msa1199870 | Msa1279100 | 0.814671 | 1.368477e-51 | -8.615850e-47 |
| Msa0574930 | Msa1279100 | 0.827406 | 1.592112e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279100 | MtrunA17_Chr8g0349411 | 68.548 | 248 | 54 | 3 | 1 | 248 | 3 | 226 | 4.84e-88 | 275 |
| Msa1279100 | MtrunA17_Chr8g0349411 | 51.916 | 287 | 74 | 9 | 243 | 513 | 16 | 254 | 3.03e-52 | 181 |
| Msa1279100 | MtrunA17_Chr7g0273841 | 54.365 | 252 | 69 | 12 | 1 | 246 | 3 | 214 | 1.90e-47 | 170 |
| Msa1279100 | MtrunA17_Chr7g0273841 | 52.632 | 247 | 61 | 10 | 243 | 481 | 16 | 214 | 5.08e-44 | 160 |
| Msa1279100 | MtrunA17_Chr8g0369391 | 97.403 | 77 | 2 | 0 | 481 | 557 | 236 | 312 | 2.09e-47 | 167 |
| Msa1279100 | MtrunA17_Chr5g0409641 | 62.500 | 88 | 32 | 1 | 469 | 556 | 224 | 310 | 5.81e-31 | 122 |
| Msa1279100 | MtrunA17_Chr5g0409651 | 63.636 | 88 | 31 | 1 | 469 | 556 | 224 | 310 | 6.67e-31 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279100 | AT1G32100.1 | 59.740 | 77 | 30 | 1 | 481 | 557 | 242 | 317 | 2.02e-24 | 104 |
| Msa1279100 | AT4G13660.1 | 59.740 | 77 | 30 | 1 | 481 | 557 | 242 | 317 | 2.27e-24 | 104 |
| Msa1279100 | AT4G13660.2 | 59.740 | 77 | 30 | 1 | 481 | 557 | 242 | 317 | 2.27e-24 | 104 |
Find 142 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTTGAATTTCAATTTAA+TGG | 0.167973 | 8_3:-15877605 | None:intergenic |
| CCACAGTATGGAACACATTT+TGG | 0.169169 | 8_3:+15879708 | Msa1279100:CDS |
| GGAATTTGGGAGAAACTTAT+TGG | 0.188551 | 8_3:+15880371 | Msa1279100:intron |
| AGAGATTCTAACAGGGATTT+TGG | 0.198586 | 8_3:-15879680 | None:intergenic |
| TGTTTGACAAACTTTGAAAT+AGG | 0.209168 | 8_3:+15880649 | Msa1279100:CDS |
| TGCTGAGCCTTCTCCGTTTA+GGG | 0.214356 | 8_3:+15878002 | Msa1279100:CDS |
| TGCTGAGCCTTCTCCGTTTA+GGG | 0.214356 | 8_3:+15880042 | Msa1279100:CDS |
| TTGAATTGGAATTGTGATTT+TGG | 0.218222 | 8_3:-15877636 | None:intergenic |
| GCAGACACGCAGTTATAATT+TGG | 0.218419 | 8_3:+15880926 | Msa1279100:three_prime_UTR |
| CTGCTGAGCCTTCTCCGTTT+AGG | 0.231438 | 8_3:+15878001 | Msa1279100:CDS |
| CTGCTGAGCCTTCTCCGTTT+AGG | 0.231438 | 8_3:+15880041 | Msa1279100:CDS |
| AAAAGCACAAAATCTCTTAA+AGG | 0.238987 | 8_3:-15880821 | None:intergenic |
| CGTCTTCGTCTTCGTCTTCA+TGG | 0.242292 | 8_3:+15877923 | Msa1279100:CDS |
| TGGTTGCAAGAGATTCTAAT+AGG | 0.276776 | 8_3:-15877681 | None:intergenic |
| AGAGATTCTAATAGGGGTTT+TGG | 0.279754 | 8_3:-15877673 | None:intergenic |
| GTTTGACAAACTTTGAAATA+GGG | 0.285880 | 8_3:+15880650 | Msa1279100:CDS |
| AGCCTTCGTCTTCGTCTTCA+TGG | 0.288923 | 8_3:+15879963 | Msa1279100:CDS |
| GAAAGAAAGCGATAAATTAA+TGG | 0.293794 | 8_3:-15880163 | None:intergenic |
| TTCATCGTCCAGGAGTTATT+CGG | 0.334483 | 8_3:+15877894 | Msa1279100:CDS |
| TAGTTCAATTGGGAATAAAC+TGG | 0.349423 | 8_3:+15880843 | Msa1279100:three_prime_UTR |
| TTCATCGTCCAGGAGTTATT+CGG | 0.352299 | 8_3:+15879895 | Msa1279100:CDS |
| AATCTCTTGCAACCACAATA+TGG | 0.360194 | 8_3:+15877689 | Msa1279100:CDS |
| CGAAGACGAAGGCTCATAAT+AGG | 0.365793 | 8_3:-15879954 | None:intergenic |
| TGGTTGCTAGAGATTCTAAC+AGG | 0.368287 | 8_3:-15879688 | None:intergenic |
| ATCTTCATCGCCGAGTTCTT+CGG | 0.370035 | 8_3:+15877843 | Msa1279100:CDS |
| ATTGCTTCTTCCACTTCAAA+TGG | 0.401943 | 8_3:-15877507 | None:intergenic |
| GGTTGCAAGAGATTCTAATA+GGG | 0.405053 | 8_3:-15877680 | None:intergenic |
| CTGCTTCGTCTTCATCGTCC+AGG | 0.406611 | 8_3:+15877884 | Msa1279100:CDS |
| TTTGAATTTGATGGTGTTGT+TGG | 0.409406 | 8_3:-15879600 | None:intergenic |
| GGGTTCTAGTGACAAAGTTC+TGG | 0.410306 | 8_3:-15877476 | None:intergenic |
| AACCACCGTACTCAAGCTTC+AGG | 0.415007 | 8_3:+15878188 | Msa1279100:CDS |
| TAAGTGACATTTGAATTTGA+TGG | 0.418035 | 8_3:-15879609 | None:intergenic |
| TATAAACTTCAAGTAGCAAT+TGG | 0.419438 | 8_3:+15880598 | Msa1279100:CDS |
| AATCTCTAGCAACCACAGTA+TGG | 0.423842 | 8_3:+15879696 | Msa1279100:CDS |
| AATACTAAAAGAAAATATAA+AGG | 0.426629 | 8_3:-15880136 | None:intergenic |
| AACCACCGTACTCAAGCTTC+AGG | 0.427212 | 8_3:+15880231 | Msa1279100:CDS |
| GCCGCGATGATATTATTAAT+AGG | 0.429999 | 8_3:+15877736 | Msa1279100:CDS |
| CGTCTTCGTCTTCATGGTCC+AGG | 0.438561 | 8_3:+15877929 | Msa1279100:CDS |
| CGTCTTCGTCTTCATGGTCC+AGG | 0.438561 | 8_3:+15879969 | Msa1279100:CDS |
| AGCACCATCTGGAGGTAGAA+TGG | 0.440367 | 8_3:+15877798 | Msa1279100:CDS |
| AGCACCATCTGGAGGTAGAA+TGG | 0.440367 | 8_3:+15879802 | Msa1279100:CDS |
| TGTTACCTTTCAATGTTGTA+AGG | 0.444547 | 8_3:-15880433 | None:intergenic |
| GAAGCAGAGTAAGAAAAGTC+TGG | 0.444551 | 8_3:-15879932 | None:intergenic |
| GTTCTTACTAATACTGCTGC+TGG | 0.448580 | 8_3:+15880205 | Msa1279100:CDS |
| GGTGCTGCTAAGGACGTGTT+TGG | 0.453036 | 8_3:-15877781 | None:intergenic |
| GGTGCTGCTAAGGACGTGTT+TGG | 0.453036 | 8_3:-15879785 | None:intergenic |
| CCACTTCAAATGGAAGGTAC+AGG | 0.454815 | 8_3:-15877497 | None:intergenic |
| CACAAAATCTCTTAAAGGTA+AGG | 0.456487 | 8_3:-15880816 | None:intergenic |
| TTTCTTTCTGATCGTGATGA+TGG | 0.457257 | 8_3:+15880178 | Msa1279100:CDS |
| ACGTCCTTAGCAGCACCATC+TGG | 0.461262 | 8_3:+15877787 | Msa1279100:CDS |
| ACGTCCTTAGCAGCACCATC+TGG | 0.461262 | 8_3:+15879791 | Msa1279100:CDS |
| AACTCTGGACTCGGTGGCGA+TGG | 0.464199 | 8_3:-15877970 | None:intergenic |
| TAGCAGAGAAACACGTTAAG+AGG | 0.464335 | 8_3:-15878062 | None:intergenic |
| AACTTTGAAATAGGGGAAGA+TGG | 0.469119 | 8_3:+15880658 | Msa1279100:CDS |
| ACGGCAGGCTCAACCCTAAA+CGG | 0.472295 | 8_3:-15880055 | None:intergenic |
| ACTCGGTGGCGATGGAACTC+TGG | 0.473224 | 8_3:-15877962 | None:intergenic |
| GGAAGTTATTGAGGAGGAGG+GGG | 0.474600 | 8_3:-15879648 | None:intergenic |
| ACGGCAGGCTCAACCCTAAA+CGG | 0.477845 | 8_3:-15878015 | None:intergenic |
| ATGCGTGTGTAATTCACCTC+AGG | 0.480231 | 8_3:-15880703 | None:intergenic |
| TTGAATTTGATGGTGTTGTT+GGG | 0.482748 | 8_3:-15879599 | None:intergenic |
| CATCTTCGTCTTCATCGTCC+AGG | 0.495096 | 8_3:+15879885 | Msa1279100:CDS |
| AACTCTGGAATAACTCCTCC+TGG | 0.497068 | 8_3:-15877947 | None:intergenic |
| AACTCTGGAATAACTCCTCC+TGG | 0.497068 | 8_3:-15879987 | None:intergenic |
| TTCTTCATTAGCATCTTAGC+GGG | 0.497711 | 8_3:+15880106 | Msa1279100:CDS |
| GCACCATCTGGAGGTAGAAT+GGG | 0.500779 | 8_3:+15877799 | Msa1279100:CDS |
| GCACCATCTGGAGGTAGAAT+GGG | 0.500779 | 8_3:+15879803 | Msa1279100:CDS |
| AATATCATCGCGGCTACCAC+GGG | 0.500895 | 8_3:-15877727 | None:intergenic |
| ACCTCCAGATGGTGCTGCTA+AGG | 0.502704 | 8_3:-15877791 | None:intergenic |
| ACCTCCAGATGGTGCTGCTA+AGG | 0.502704 | 8_3:-15879795 | None:intergenic |
| ACTCGGTGGCGATGAAACTC+TGG | 0.503638 | 8_3:-15880002 | None:intergenic |
| TCGAAGTGTGTTCCATATTG+TGG | 0.508234 | 8_3:-15877701 | None:intergenic |
| GAAACTTATTGGAAAGGAGC+TGG | 0.511447 | 8_3:+15880382 | Msa1279100:intron |
| TTGGGAGAAACTTATTGGAA+AGG | 0.516008 | 8_3:+15880376 | Msa1279100:intron |
| TGGAAGTTATTGAGGAGGAG+GGG | 0.521459 | 8_3:-15879649 | None:intergenic |
| TAATATCATCGCGGCTACCA+CGG | 0.525240 | 8_3:-15877728 | None:intergenic |
| TTTGACAAACTTTGAAATAG+GGG | 0.526655 | 8_3:+15880651 | Msa1279100:CDS |
| TTGGAAGTTATTGAGGAGGA+GGG | 0.528316 | 8_3:-15879650 | None:intergenic |
| CGATGGAACCGAATAACTCC+TGG | 0.529083 | 8_3:-15879903 | None:intergenic |
| ATTGGAAGTTATTGAGGAGG+AGG | 0.530571 | 8_3:-15879651 | None:intergenic |
| CCTGTACCTTCCATTTGAAG+TGG | 0.531246 | 8_3:+15877497 | Msa1279100:CDS |
| CTTCTTCCACTTCAAATGGA+AGG | 0.535549 | 8_3:-15877503 | None:intergenic |
| CGATGGAGCCGAATAACTCC+TGG | 0.535737 | 8_3:-15877902 | None:intergenic |
| GGCTTCCTTACAACATTGAA+AGG | 0.541729 | 8_3:+15880428 | Msa1279100:CDS |
| TCAAACACAGACATGTTGGT+TGG | 0.542642 | 8_3:+15880784 | Msa1279100:three_prime_UTR |
| AATACTTCCACGTGAGGTAG+TGG | 0.545465 | 8_3:+15880760 | Msa1279100:three_prime_UTR |
| CACTTCAAATGGAAGGTACA+GGG | 0.551942 | 8_3:-15877496 | None:intergenic |
| GACGAAGATGAAGAAAACTC+TGG | 0.554821 | 8_3:-15879872 | None:intergenic |
| TTTCTTTCTGATCGTGATGA+GGG | 0.556035 | 8_3:+15878135 | Msa1279100:CDS |
| ATTCACCTCAGGGTAAAGCT+TGG | 0.558374 | 8_3:-15880692 | None:intergenic |
| GTTGCAAGAGATTCTAATAG+GGG | 0.560446 | 8_3:-15877679 | None:intergenic |
| TGAATTGGAAGTTATTGAGG+AGG | 0.561439 | 8_3:-15879654 | None:intergenic |
| AGAATCAACTTCAGCATCAA+CGG | 0.564451 | 8_3:-15880074 | None:intergenic |
| AATATCATCGCGGCTACCGT+GGG | 0.565443 | 8_3:-15879734 | None:intergenic |
| GAGTAAGAAAAGTCTGGACT+CGG | 0.565928 | 8_3:-15879926 | None:intergenic |
| CCTCCCATTCTACCTCCAGA+TGG | 0.568412 | 8_3:-15877802 | None:intergenic |
| CCTCCCATTCTACCTCCAGA+TGG | 0.568412 | 8_3:-15879806 | None:intergenic |
| GGCGATGGAGCCGAAGAACT+CGG | 0.572951 | 8_3:-15877853 | None:intergenic |
| AATGTTGTAAGGAAGCCCTC+AGG | 0.573144 | 8_3:-15880422 | None:intergenic |
| GGCTCAACCCTAAACGGAGA+AGG | 0.576211 | 8_3:-15878009 | None:intergenic |
| GGCTCAACCCTAAACGGAGA+AGG | 0.576211 | 8_3:-15880049 | None:intergenic |
| GAGTAAGAAAACTCTGGACT+CGG | 0.576984 | 8_3:-15877979 | None:intergenic |
| GAGTAAGAAAACTCTGGACT+CGG | 0.576984 | 8_3:-15880019 | None:intergenic |
| TTTCTTCATTAGCATCTTAG+CGG | 0.577112 | 8_3:+15880105 | Msa1279100:CDS |
| GCCGCGATGATATTATTAGT+AGG | 0.580266 | 8_3:+15879743 | Msa1279100:CDS |
| AATTACCTGAAGCTTGAGTA+CGG | 0.580346 | 8_3:-15878193 | None:intergenic |
| AATTACCTGAAGCTTGAGTA+CGG | 0.580346 | 8_3:-15880236 | None:intergenic |
| TCAACTTCAGCATCAACGGC+AGG | 0.583568 | 8_3:-15880070 | None:intergenic |
| GCAGAGATCGAAACAAGAAA+CGG | 0.584991 | 8_3:-15878034 | None:intergenic |
| AGATCGAAACAAGAAACGGC+AGG | 0.592909 | 8_3:-15878030 | None:intergenic |
| TTTGAATTTCAATTTAATGG+CGG | 0.596082 | 8_3:-15877602 | None:intergenic |
| TGAGGTGAATTACACACGCA+TGG | 0.597960 | 8_3:+15880705 | Msa1279100:CDS |
| CCAAAATGTGTTCCATACTG+TGG | 0.603683 | 8_3:-15879708 | None:intergenic |
| TGCGTGTGTAATTCACCTCA+GGG | 0.611857 | 8_3:-15880702 | None:intergenic |
| TCAGCAGAGTAAGAAAACTC+TGG | 0.616367 | 8_3:-15877985 | None:intergenic |
| TCAGCAGAGTAAGAAAACTC+TGG | 0.616367 | 8_3:-15880025 | None:intergenic |
| CCATCTGGAGGTAGAATGGG+AGG | 0.622273 | 8_3:+15877802 | Msa1279100:CDS |
| CCATCTGGAGGTAGAATGGG+AGG | 0.622273 | 8_3:+15879806 | Msa1279100:CDS |
| TGGTTCAAACACAGACATGT+TGG | 0.624528 | 8_3:+15880780 | Msa1279100:three_prime_UTR |
| GTTGTGAAGGTGTGAGTGCG+AGG | 0.630964 | 8_3:-15879563 | None:intergenic |
| TATTGATATTGAAGTTGTGA+AGG | 0.636338 | 8_3:-15877551 | None:intergenic |
| TATTGATATTGAAGTTGTGA+AGG | 0.636338 | 8_3:-15879576 | None:intergenic |
| AAATGAAATACTTCCACGTG+AGG | 0.644142 | 8_3:+15880754 | Msa1279100:three_prime_UTR |
| GTTGTGAAGGTGCGAGTGCG+AGG | 0.644246 | 8_3:-15877538 | None:intergenic |
| AAGACATACATTCCTCCTGA+GGG | 0.654898 | 8_3:+15880407 | Msa1279100:CDS |
| GTTTGAACCACTACCTCACG+TGG | 0.655274 | 8_3:-15880767 | None:intergenic |
| GTTGTAAGGAAGCCCTCAGG+AGG | 0.661067 | 8_3:-15880419 | None:intergenic |
| TAAGAAAACTCTGGACTCGG+TGG | 0.671186 | 8_3:-15877976 | None:intergenic |
| TAAGAAAACTCTGGACTCGG+TGG | 0.671186 | 8_3:-15880016 | None:intergenic |
| GAAGACATACATTCCTCCTG+AGG | 0.674555 | 8_3:+15880406 | Msa1279100:CDS |
| GAAGACGAAGACGAAGACGA+TGG | 0.676584 | 8_3:-15877919 | None:intergenic |
| TCCTTAGCAGCACCATCTGG+AGG | 0.678749 | 8_3:+15877790 | Msa1279100:CDS |
| TCCTTAGCAGCACCATCTGG+AGG | 0.678749 | 8_3:+15879794 | Msa1279100:CDS |
| GACCATGAAGACGAAGACGA+AGG | 0.684903 | 8_3:-15879965 | None:intergenic |
| CTTCGTCTTCATGGTCCAGG+AGG | 0.687902 | 8_3:+15877932 | Msa1279100:CDS |
| CTTCGTCTTCATGGTCCAGG+AGG | 0.687902 | 8_3:+15879972 | Msa1279100:CDS |
| TCCTATTAATAATATCATCG+CGG | 0.697702 | 8_3:-15877737 | None:intergenic |
| GGTTGCTAGAGATTCTAACA+GGG | 0.697964 | 8_3:-15879687 | None:intergenic |
| AGCATCCAAGCTTTACCCTG+AGG | 0.701976 | 8_3:+15880687 | Msa1279100:CDS |
| TCCTACTAATAATATCATCG+CGG | 0.706083 | 8_3:-15879744 | None:intergenic |
| GAACACACTTCGAAAACCCG+TGG | 0.707626 | 8_3:+15877711 | Msa1279100:CDS |
| TACCTGAAGCTTGAGTACGG+TGG | 0.724017 | 8_3:-15878190 | None:intergenic |
| TACCTGAAGCTTGAGTACGG+TGG | 0.724017 | 8_3:-15880233 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+GGG | - | chr8_3:15878755-15878774 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | - | chr8_3:15878756-15878775 | None:intergenic | 0.0% |
| !!! | AGTATTATTGATTTTAATTT+TGG | + | chr8_3:15878098-15878117 | Msa1279100:CDS | 10.0% |
| !!! | GTATTATTGATTTTAATTTT+GGG | + | chr8_3:15878099-15878118 | Msa1279100:CDS | 10.0% |
| !! | AATACTAAAAGAAAATATAA+AGG | - | chr8_3:15880139-15880158 | None:intergenic | 10.0% |
| !! | NNNNNNNNNNTATTGGAATT+TGG | + | chr8_3:15880357-15880376 | Msa1279100:intron | 10.0% |
| !! | NNNNNNNNNTATTGGAATTT+GGG | + | chr8_3:15880358-15880377 | Msa1279100:intron | 10.0% |
| !!! | ATTTTTACACATAAATTTTT+AGG | - | chr8_3:15880738-15880757 | None:intergenic | 10.0% |
| !! | ACATTTGAATTTCAATTTAA+TGG | - | chr8_3:15877608-15877627 | None:intergenic | 15.0% |
| !! | GTAATTAATGTTATTGAAAA+TGG | + | chr8_3:15878348-15878367 | Msa1279100:intron | 15.0% |
| !! | GCATTTCATTAATTAAAATT+TGG | + | chr8_3:15878520-15878539 | Msa1279100:intron | 15.0% |
| !! | ATAAAAAATACCTTCATAAA+AGG | - | chr8_3:15878587-15878606 | None:intergenic | 15.0% |
| !!! | TTTTTCTTTATGAGAAAAAA+AGG | - | chr8_3:15878979-15878998 | None:intergenic | 15.0% |
| !! | TTTGAATTTCAATTTAATGG+CGG | - | chr8_3:15877605-15877624 | None:intergenic | 20.0% |
| !!! | ATTGATTTTAATTTTGGGTT+CGG | + | chr8_3:15878104-15878123 | Msa1279100:CDS | 20.0% |
| !! | AAATACTATCCATCATATAT+TGG | + | chr8_3:15878269-15878288 | Msa1279100:intron | 20.0% |
| !!! | CATTTGCATTATTACTTTTA+TGG | - | chr8_3:15878312-15878331 | None:intergenic | 20.0% |
| !! | CAAATGATATAACTATGAAA+AGG | + | chr8_3:15878326-15878345 | Msa1279100:intron | 20.0% |
| !! | AACAAAAATTCCTTAGTTTA+TGG | + | chr8_3:15878899-15878918 | Msa1279100:intron | 20.0% |
| !!! | GATCTTATTTTCTGATTAAA+AGG | - | chr8_3:15879092-15879111 | None:intergenic | 20.0% |
| !!! | TTTGATGATGATATAATTGA+TGG | - | chr8_3:15879469-15879488 | None:intergenic | 20.0% |
| !!! | TTCTATCATATTTTCTATGA+GGG | + | chr8_3:15880625-15880644 | Msa1279100:CDS | 20.0% |
| ! | TATTGATATTGAAGTTGTGA+AGG | - | chr8_3:15877554-15877573 | None:intergenic | 25.0% |
| !! | TTGTGTGATTTTATGTTGTT+AGG | - | chr8_3:15877577-15877596 | None:intergenic | 25.0% |
| !! | TTGAATTGGAATTGTGATTT+TGG | - | chr8_3:15877639-15877658 | None:intergenic | 25.0% |
| !!! | TTTTGGTTTTGGTTTTGAAT+TGG | - | chr8_3:15877653-15877672 | None:intergenic | 25.0% |
| ! | TCCTATTAATAATATCATCG+CGG | - | chr8_3:15877740-15877759 | None:intergenic | 25.0% |
| ! | AATACAGTACCAATATATGA+TGG | - | chr8_3:15878281-15878300 | None:intergenic | 25.0% |
| ! | TGTTATTGAAAATGGAATAG+AGG | + | chr8_3:15878356-15878375 | Msa1279100:intron | 25.0% |
| !! | ATGTTTGTTAAACCTAATGA+AGG | + | chr8_3:15878810-15878829 | Msa1279100:intron | 25.0% |
| ! | TTAAACCTAATGAAGGAAAA+AGG | + | chr8_3:15878817-15878836 | Msa1279100:intron | 25.0% |
| ! | AAAAAGGTTAGATGTAAAGA+AGG | + | chr8_3:15878833-15878852 | Msa1279100:intron | 25.0% |
| ! | CAAATGTTAACCATAAACTA+AGG | - | chr8_3:15878912-15878931 | None:intergenic | 25.0% |
| !!! | TGTTTTTTTAGGAAAAGGAA+AGG | - | chr8_3:15879058-15879077 | None:intergenic | 25.0% |
| !!! | TTGGTTGTTTTTTTAGGAAA+AGG | - | chr8_3:15879063-15879082 | None:intergenic | 25.0% |
| ! | TTCCTAAAAAAACAACCAAT+TGG | + | chr8_3:15879064-15879083 | Msa1279100:intron | 25.0% |
| !!! | TTCCAATTGGTTGTTTTTTT+AGG | - | chr8_3:15879069-15879088 | None:intergenic | 25.0% |
| ! | GAGCAATAATCTATAAAGTA+AGG | - | chr8_3:15879286-15879305 | None:intergenic | 25.0% |
| ! | ATGATGATATAATTGATGGA+GGG | - | chr8_3:15879465-15879484 | None:intergenic | 25.0% |
| ! | TATTGATATTGAAGTTGTGA+AGG | - | chr8_3:15877554-15877573 | None:intergenic | 25.0% |
| ! | TAAGTGACATTTGAATTTGA+TGG | - | chr8_3:15879612-15879631 | None:intergenic | 25.0% |
| !! | TTTTGAATTGGAAGTTATTG+AGG | - | chr8_3:15879660-15879679 | None:intergenic | 25.0% |
| ! | GAAAGAAAGCGATAAATTAA+TGG | - | chr8_3:15880166-15880185 | None:intergenic | 25.0% |
| ! | TTACTTTCCTAATACATGTA+AGG | - | chr8_3:15880509-15880528 | None:intergenic | 25.0% |
| !!! | TTTATGTGAAATTGATTTGC+AGG | + | chr8_3:15880568-15880587 | Msa1279100:intron | 25.0% |
| ! | TATAAACTTCAAGTAGCAAT+TGG | + | chr8_3:15880598-15880617 | Msa1279100:CDS | 25.0% |
| !! | CTTCTATCATATTTTCTATG+AGG | + | chr8_3:15880624-15880643 | Msa1279100:CDS | 25.0% |
| !!! | TGTTTGACAAACTTTGAAAT+AGG | + | chr8_3:15880649-15880668 | Msa1279100:CDS | 25.0% |
| !!! | GTTTGACAAACTTTGAAATA+GGG | + | chr8_3:15880650-15880669 | Msa1279100:CDS | 25.0% |
| !!! | TTTGACAAACTTTGAAATAG+GGG | + | chr8_3:15880651-15880670 | Msa1279100:CDS | 25.0% |
| !! | AAAAGCACAAAATCTCTTAA+AGG | - | chr8_3:15880824-15880843 | None:intergenic | 25.0% |
| !!! | TTTTGTGCTTTTAGTTCAAT+TGG | + | chr8_3:15880832-15880851 | Msa1279100:three_prime_UTR | 25.0% |
| !!! | TTTGTGCTTTTAGTTCAATT+GGG | + | chr8_3:15880833-15880852 | Msa1279100:three_prime_UTR | 25.0% |
| TATTGAAAATGGAATAGAGG+AGG | + | chr8_3:15878359-15878378 | Msa1279100:intron | 30.0% | |
| ATTGAAAATGGAATAGAGGA+GGG | + | chr8_3:15878360-15878379 | Msa1279100:intron | 30.0% | |
| ! | TTTTTACGCAAGCAAAATCA+AGG | + | chr8_3:15878498-15878517 | Msa1279100:intron | 30.0% |
| ! | ATAGAAGACACCTTTTATGA+AGG | + | chr8_3:15878574-15878593 | Msa1279100:intron | 30.0% |
| !!! | ACACCAACTACTTTTTATGA+AGG | + | chr8_3:15878636-15878655 | Msa1279100:intron | 30.0% |
| ACACCTTCATAAAAAGTAGT+TGG | - | chr8_3:15878642-15878661 | None:intergenic | 30.0% | |
| ! | TCTAACCTTTTTCCTTCATT+AGG | - | chr8_3:15878825-15878844 | None:intergenic | 30.0% |
| !! | TCACATATTTTGAGCACAAA+CGG | - | chr8_3:15878869-15878888 | None:intergenic | 30.0% |
| TCTGATTAAAAGGTTCCAAT+TGG | - | chr8_3:15879082-15879101 | None:intergenic | 30.0% | |
| GATGATGATATAATTGATGG+AGG | - | chr8_3:15879466-15879485 | None:intergenic | 30.0% | |
| ATTGCTTCTTCCATTTCAAA+TGG | - | chr8_3:15879535-15879554 | None:intergenic | 30.0% | |
| !! | TTGAATTTGATGGTGTTGTT+GGG | - | chr8_3:15879602-15879621 | None:intergenic | 30.0% |
| !! | TTTGAATTTGATGGTGTTGT+TGG | - | chr8_3:15879603-15879622 | None:intergenic | 30.0% |
| TCCTACTAATAATATCATCG+CGG | - | chr8_3:15879747-15879766 | None:intergenic | 30.0% | |
| TTTCTTCATTAGCATCTTAG+CGG | + | chr8_3:15880105-15880124 | Msa1279100:CDS | 30.0% | |
| TGTTACCTTTCAATGTTGTA+AGG | - | chr8_3:15880436-15880455 | None:intergenic | 30.0% | |
| TTATGCACCTTACATGTATT+AGG | + | chr8_3:15880499-15880518 | Msa1279100:intron | 30.0% | |
| CAGTTAGTGTAAGTGATTTA+TGG | + | chr8_3:15880544-15880563 | Msa1279100:intron | 30.0% | |
| CACAAAATCTCTTAAAGGTA+AGG | - | chr8_3:15880819-15880838 | None:intergenic | 30.0% | |
| TAGTTCAATTGGGAATAAAC+TGG | + | chr8_3:15880843-15880862 | Msa1279100:three_prime_UTR | 30.0% | |
| ATTGCTTCTTCCACTTCAAA+TGG | - | chr8_3:15877510-15877529 | None:intergenic | 35.0% | |
| !!! | TCTAATAGGGGTTTTGGTTT+TGG | - | chr8_3:15877670-15877689 | None:intergenic | 35.0% |
| ! | AGAGATTCTAATAGGGGTTT+TGG | - | chr8_3:15877676-15877695 | None:intergenic | 35.0% |
| GTTGCAAGAGATTCTAATAG+GGG | - | chr8_3:15877682-15877701 | None:intergenic | 35.0% | |
| GGTTGCAAGAGATTCTAATA+GGG | - | chr8_3:15877683-15877702 | None:intergenic | 35.0% | |
| TGGTTGCAAGAGATTCTAAT+AGG | - | chr8_3:15877684-15877703 | None:intergenic | 35.0% | |
| AATCTCTTGCAACCACAATA+TGG | + | chr8_3:15877689-15877708 | Msa1279100:CDS | 35.0% | |
| GCCGCGATGATATTATTAAT+AGG | + | chr8_3:15877736-15877755 | Msa1279100:CDS | 35.0% | |
| ! | TTTTCTTTCTGATCGTGATG+AGG | + | chr8_3:15878134-15878153 | Msa1279100:CDS | 35.0% |
| TTTCTTTCTGATCGTGATGA+GGG | + | chr8_3:15878135-15878154 | Msa1279100:CDS | 35.0% | |
| AATTACCTGAAGCTTGAGTA+CGG | - | chr8_3:15878196-15878215 | None:intergenic | 35.0% | |
| CAACAGAAAAACATGAAGCA+TGG | - | chr8_3:15878420-15878439 | None:intergenic | 35.0% | |
| ! | CATGCTTCATGTTTTTCTGT+TGG | + | chr8_3:15878418-15878437 | Msa1279100:intron | 35.0% |
| AAAGTGAAAATCACACCTTG+AGG | + | chr8_3:15878684-15878703 | Msa1279100:intron | 35.0% | |
| TTGATAAAAGACACCACCAA+AGG | + | chr8_3:15878713-15878732 | Msa1279100:intron | 35.0% | |
| TTATGTTACAAGCCATCCTT+TGG | - | chr8_3:15878732-15878751 | None:intergenic | 35.0% | |
| ! | CATTTCAAATGGAAGGTACA+GGG | - | chr8_3:15879524-15879543 | None:intergenic | 35.0% |
| CTTCTTCCATTTCAAATGGA+AGG | - | chr8_3:15879531-15879550 | None:intergenic | 35.0% | |
| TGAATTGGAAGTTATTGAGG+AGG | - | chr8_3:15879657-15879676 | None:intergenic | 35.0% | |
| !!! | CAGGGATTTTGGTTTTGAAT+TGG | - | chr8_3:15879672-15879691 | None:intergenic | 35.0% |
| ! | AGAGATTCTAACAGGGATTT+TGG | - | chr8_3:15879683-15879702 | None:intergenic | 35.0% |
| AGAATCAACTTCAGCATCAA+CGG | - | chr8_3:15880077-15880096 | None:intergenic | 35.0% | |
| TTCTTCATTAGCATCTTAGC+GGG | + | chr8_3:15880106-15880125 | Msa1279100:CDS | 35.0% | |
| TTTCTTTCTGATCGTGATGA+TGG | + | chr8_3:15878135-15878154 | Msa1279100:CDS | 35.0% | |
| AATTACCTGAAGCTTGAGTA+CGG | - | chr8_3:15878196-15878215 | None:intergenic | 35.0% | |
| GGAATTTGGGAGAAACTTAT+TGG | + | chr8_3:15880371-15880390 | Msa1279100:intron | 35.0% | |
| TTGGGAGAAACTTATTGGAA+AGG | + | chr8_3:15880376-15880395 | Msa1279100:intron | 35.0% | |
| !! | GTGAAATTGATTTGCAGGAT+TGG | + | chr8_3:15880573-15880592 | Msa1279100:intron | 35.0% |
| !! | AACTTTGAAATAGGGGAAGA+TGG | + | chr8_3:15880658-15880677 | Msa1279100:CDS | 35.0% |
| AAATGAAATACTTCCACGTG+AGG | + | chr8_3:15880754-15880773 | Msa1279100:three_prime_UTR | 35.0% | |
| ! | CACTTCAAATGGAAGGTACA+GGG | - | chr8_3:15877499-15877518 | None:intergenic | 40.0% |
| CTTCTTCCACTTCAAATGGA+AGG | - | chr8_3:15877506-15877525 | None:intergenic | 40.0% | |
| !!! | AGGGGTTTTGGTTTTGGTTT+TGG | - | chr8_3:15877664-15877683 | None:intergenic | 40.0% |
| TCGAAGTGTGTTCCATATTG+TGG | - | chr8_3:15877704-15877723 | None:intergenic | 40.0% | |
| GAAGACGAAGCAGAAAAACT+CGG | - | chr8_3:15877877-15877896 | None:intergenic | 40.0% | |
| TTCATCGTCCAGGAGTTATT+CGG | + | chr8_3:15877894-15877913 | Msa1279100:CDS | 40.0% | |
| GAGTAAGAAAACTCTGGACT+CGG | - | chr8_3:15877982-15878001 | None:intergenic | 40.0% | |
| TCAGCAGAGTAAGAAAACTC+TGG | - | chr8_3:15877988-15878007 | None:intergenic | 40.0% | |
| GCAGAGATCGAAACAAGAAA+CGG | - | chr8_3:15878037-15878056 | None:intergenic | 40.0% | |
| TAGCAGAGAAACACGTTAAG+AGG | - | chr8_3:15878065-15878084 | None:intergenic | 40.0% | |
| ! | TTTTATCAAGTCGCACCTCA+AGG | - | chr8_3:15878702-15878721 | None:intergenic | 40.0% |
| TAAAAGACACCACCAAAGGA+TGG | + | chr8_3:15878717-15878736 | Msa1279100:intron | 40.0% | |
| ! | GTATTTTCGGAATGACTGCA+GGG | - | chr8_3:15879333-15879352 | None:intergenic | 40.0% |
| ! | GTTTAGAGTTTACGGTGGAA+TGG | - | chr8_3:15879443-15879462 | None:intergenic | 40.0% |
| ! | GATGGAGGGTTTAGAGTTTA+CGG | - | chr8_3:15879451-15879470 | None:intergenic | 40.0% |
| CAAACTTGTGGACATAGTCA+TGG | - | chr8_3:15879492-15879511 | None:intergenic | 40.0% | |
| ! | GGGTTCTAGTAACAAACTTG+TGG | - | chr8_3:15879504-15879523 | None:intergenic | 40.0% |
| ! | CCATTTCAAATGGAAGGTAC+AGG | - | chr8_3:15879525-15879544 | None:intergenic | 40.0% |
| CCTGTACCTTCCATTTGAAA+TGG | + | chr8_3:15879522-15879541 | Msa1279100:intron | 40.0% | |
| TTGGAAGTTATTGAGGAGGA+GGG | - | chr8_3:15879653-15879672 | None:intergenic | 40.0% | |
| ATTGGAAGTTATTGAGGAGG+AGG | - | chr8_3:15879654-15879673 | None:intergenic | 40.0% | |
| GGTTGCTAGAGATTCTAACA+GGG | - | chr8_3:15879690-15879709 | None:intergenic | 40.0% | |
| TGGTTGCTAGAGATTCTAAC+AGG | - | chr8_3:15879691-15879710 | None:intergenic | 40.0% | |
| AATCTCTAGCAACCACAGTA+TGG | + | chr8_3:15879696-15879715 | Msa1279100:CDS | 40.0% | |
| CCAAAATGTGTTCCATACTG+TGG | - | chr8_3:15879711-15879730 | None:intergenic | 40.0% | |
| ! | CCACAGTATGGAACACATTT+TGG | + | chr8_3:15879708-15879727 | Msa1279100:CDS | 40.0% |
| !! | GAACACATTTTGGAAACCCA+CGG | + | chr8_3:15879718-15879737 | Msa1279100:CDS | 40.0% |
| GCCGCGATGATATTATTAGT+AGG | + | chr8_3:15879743-15879762 | Msa1279100:CDS | 40.0% | |
| GACGAAGATGAAGAAAACTC+TGG | - | chr8_3:15879875-15879894 | None:intergenic | 40.0% | |
| TTCATCGTCCAGGAGTTATT+CGG | + | chr8_3:15877894-15877913 | Msa1279100:CDS | 40.0% | |
| GAGTAAGAAAAGTCTGGACT+CGG | - | chr8_3:15879929-15879948 | None:intergenic | 40.0% | |
| GAAGCAGAGTAAGAAAAGTC+TGG | - | chr8_3:15879935-15879954 | None:intergenic | 40.0% | |
| GAGTAAGAAAACTCTGGACT+CGG | - | chr8_3:15877982-15878001 | None:intergenic | 40.0% | |
| TCAGCAGAGTAAGAAAACTC+TGG | - | chr8_3:15877988-15878007 | None:intergenic | 40.0% | |
| GTTCTTACTAATACTGCTGC+TGG | + | chr8_3:15878162-15878181 | Msa1279100:CDS | 40.0% | |
| GAAACTTATTGGAAAGGAGC+TGG | + | chr8_3:15880382-15880401 | Msa1279100:intron | 40.0% | |
| AAGACATACATTCCTCCTGA+GGG | + | chr8_3:15880407-15880426 | Msa1279100:CDS | 40.0% | |
| GGCTTCCTTACAACATTGAA+AGG | + | chr8_3:15880428-15880447 | Msa1279100:CDS | 40.0% | |
| TGGTTCAAACACAGACATGT+TGG | + | chr8_3:15880780-15880799 | Msa1279100:three_prime_UTR | 40.0% | |
| TCAAACACAGACATGTTGGT+TGG | + | chr8_3:15880784-15880803 | Msa1279100:three_prime_UTR | 40.0% | |
| GCAGACACGCAGTTATAATT+TGG | + | chr8_3:15880926-15880945 | Msa1279100:three_prime_UTR | 40.0% | |
| ! | GGGTTCTAGTGACAAAGTTC+TGG | - | chr8_3:15877479-15877498 | None:intergenic | 45.0% |
| ! | CCACTTCAAATGGAAGGTAC+AGG | - | chr8_3:15877500-15877519 | None:intergenic | 45.0% |
| CCTGTACCTTCCATTTGAAG+TGG | + | chr8_3:15877497-15877516 | Msa1279100:CDS | 45.0% | |
| TAATATCATCGCGGCTACCA+CGG | - | chr8_3:15877731-15877750 | None:intergenic | 45.0% | |
| ATCTTCATCGCCGAGTTCTT+CGG | + | chr8_3:15877843-15877862 | Msa1279100:CDS | 45.0% | |
| !! | AACTCTGGAATAACTCCTCC+TGG | - | chr8_3:15877950-15877969 | None:intergenic | 45.0% |
| TAAGAAAACTCTGGACTCGG+TGG | - | chr8_3:15877979-15877998 | None:intergenic | 45.0% | |
| AGATCGAAACAAGAAACGGC+AGG | - | chr8_3:15878033-15878052 | None:intergenic | 45.0% | |
| TGTTACAAGCCATCCTTTGG+TGG | - | chr8_3:15878729-15878748 | None:intergenic | 45.0% | |
| ! | GGTATTTTCGGAATGACTGC+AGG | - | chr8_3:15879334-15879353 | None:intergenic | 45.0% |
| !!! | AACTAGCGCAGGGGTATTTT+CGG | - | chr8_3:15879346-15879365 | None:intergenic | 45.0% |
| TGGAAGTTATTGAGGAGGAG+GGG | - | chr8_3:15879652-15879671 | None:intergenic | 45.0% | |
| CGAAGACGAAGGCTCATAAT+AGG | - | chr8_3:15879957-15879976 | None:intergenic | 45.0% | |
| !! | AACTCTGGAATAACTCCTCC+TGG | - | chr8_3:15877950-15877969 | None:intergenic | 45.0% |
| TAAGAAAACTCTGGACTCGG+TGG | - | chr8_3:15877979-15877998 | None:intergenic | 45.0% | |
| GAAGACATACATTCCTCCTG+AGG | + | chr8_3:15880406-15880425 | Msa1279100:CDS | 45.0% | |
| AATGTTGTAAGGAAGCCCTC+AGG | - | chr8_3:15880425-15880444 | None:intergenic | 45.0% | |
| ATTCACCTCAGGGTAAAGCT+TGG | - | chr8_3:15880695-15880714 | None:intergenic | 45.0% | |
| TGCGTGTGTAATTCACCTCA+GGG | - | chr8_3:15880705-15880724 | None:intergenic | 45.0% | |
| ATGCGTGTGTAATTCACCTC+AGG | - | chr8_3:15880706-15880725 | None:intergenic | 45.0% | |
| TGAGGTGAATTACACACGCA+TGG | + | chr8_3:15880705-15880724 | Msa1279100:CDS | 45.0% | |
| AATACTTCCACGTGAGGTAG+TGG | + | chr8_3:15880760-15880779 | Msa1279100:three_prime_UTR | 45.0% | |
| !! | ATGATATATATATATATATA+TGG | + | chr8_3:15878545-15878564 | Msa1279100:intron | 5.0% |
| !! | TGATATATATATATATATAT+GGG | + | chr8_3:15878546-15878565 | Msa1279100:intron | 5.0% |
| !! | AAAATTAATAAAATATTAAG+TGG | + | chr8_3:15879209-15879228 | Msa1279100:intron | 5.0% |
| GAACACACTTCGAAAACCCG+TGG | + | chr8_3:15877711-15877730 | Msa1279100:CDS | 50.0% | |
| AATATCATCGCGGCTACCAC+GGG | - | chr8_3:15877730-15877749 | None:intergenic | 50.0% | |
| AGCACCATCTGGAGGTAGAA+TGG | + | chr8_3:15877798-15877817 | Msa1279100:CDS | 50.0% | |
| GCACCATCTGGAGGTAGAAT+GGG | + | chr8_3:15877799-15877818 | Msa1279100:CDS | 50.0% | |
| GAAGCAGAAAAACTCGGCGA+TGG | - | chr8_3:15877871-15877890 | None:intergenic | 50.0% | |
| GAAGACGAAGACGAAGACGA+TGG | - | chr8_3:15877922-15877941 | None:intergenic | 50.0% | |
| CGTCTTCGTCTTCGTCTTCA+TGG | + | chr8_3:15877923-15877942 | Msa1279100:CDS | 50.0% | |
| TGCTGAGCCTTCTCCGTTTA+GGG | + | chr8_3:15878002-15878021 | Msa1279100:CDS | 50.0% | |
| AACCACCGTACTCAAGCTTC+AGG | + | chr8_3:15878188-15878207 | Msa1279100:CDS | 50.0% | |
| TACCTGAAGCTTGAGTACGG+TGG | - | chr8_3:15878193-15878212 | None:intergenic | 50.0% | |
| ! | GGAGGGTTTAGAGTTTACGG+TGG | - | chr8_3:15879448-15879467 | None:intergenic | 50.0% |
| GGAAGTTATTGAGGAGGAGG+GGG | - | chr8_3:15879651-15879670 | None:intergenic | 50.0% | |
| AATATCATCGCGGCTACCGT+GGG | - | chr8_3:15879737-15879756 | None:intergenic | 50.0% | |
| TAATATCATCGCGGCTACCG+TGG | - | chr8_3:15879738-15879757 | None:intergenic | 50.0% | |
| AGCACCATCTGGAGGTAGAA+TGG | + | chr8_3:15877798-15877817 | Msa1279100:CDS | 50.0% | |
| GCACCATCTGGAGGTAGAAT+GGG | + | chr8_3:15877799-15877818 | Msa1279100:CDS | 50.0% | |
| CATCTTCGTCTTCATCGTCC+AGG | + | chr8_3:15879885-15879904 | Msa1279100:CDS | 50.0% | |
| CGATGGAACCGAATAACTCC+TGG | - | chr8_3:15879906-15879925 | None:intergenic | 50.0% | |
| AGCCTTCGTCTTCGTCTTCA+TGG | + | chr8_3:15879963-15879982 | Msa1279100:CDS | 50.0% | |
| GACCATGAAGACGAAGACGA+AGG | - | chr8_3:15877928-15877947 | None:intergenic | 50.0% | |
| TGCTGAGCCTTCTCCGTTTA+GGG | + | chr8_3:15878002-15878021 | Msa1279100:CDS | 50.0% | |
| TCAACTTCAGCATCAACGGC+AGG | - | chr8_3:15880073-15880092 | None:intergenic | 50.0% | |
| AACCACCGTACTCAAGCTTC+AGG | + | chr8_3:15878188-15878207 | Msa1279100:CDS | 50.0% | |
| TACCTGAAGCTTGAGTACGG+TGG | - | chr8_3:15878193-15878212 | None:intergenic | 50.0% | |
| AGCATCCAAGCTTTACCCTG+AGG | + | chr8_3:15880687-15880706 | Msa1279100:CDS | 50.0% | |
| GTTTGAACCACTACCTCACG+TGG | - | chr8_3:15880770-15880789 | None:intergenic | 50.0% | |
| !! | GGTGCTGCTAAGGACGTGTT+TGG | - | chr8_3:15877784-15877803 | None:intergenic | 55.0% |
| ACGTCCTTAGCAGCACCATC+TGG | + | chr8_3:15877787-15877806 | Msa1279100:CDS | 55.0% | |
| TCCTTAGCAGCACCATCTGG+AGG | + | chr8_3:15877790-15877809 | Msa1279100:CDS | 55.0% | |
| !! | ACCTCCAGATGGTGCTGCTA+AGG | - | chr8_3:15877794-15877813 | None:intergenic | 55.0% |
| CCTCCCATTCTACCTCCAGA+TGG | - | chr8_3:15877805-15877824 | None:intergenic | 55.0% | |
| CCATCTGGAGGTAGAATGGG+AGG | + | chr8_3:15877802-15877821 | Msa1279100:CDS | 55.0% | |
| CTGCTTCGTCTTCATCGTCC+AGG | + | chr8_3:15877884-15877903 | Msa1279100:CDS | 55.0% | |
| CGATGGAGCCGAATAACTCC+TGG | - | chr8_3:15877905-15877924 | None:intergenic | 55.0% | |
| CGTCTTCGTCTTCATGGTCC+AGG | + | chr8_3:15877929-15877948 | Msa1279100:CDS | 55.0% | |
| CTTCGTCTTCATGGTCCAGG+AGG | + | chr8_3:15877932-15877951 | Msa1279100:CDS | 55.0% | |
| CTGCTGAGCCTTCTCCGTTT+AGG | + | chr8_3:15878001-15878020 | Msa1279100:CDS | 55.0% | |
| GGCTCAACCCTAAACGGAGA+AGG | - | chr8_3:15878012-15878031 | None:intergenic | 55.0% | |
| ACGGCAGGCTCAACCCTAAA+CGG | - | chr8_3:15878018-15878037 | None:intergenic | 55.0% | |
| ! | TGCGAGCTAAAAGTGCAGGG+CGG | - | chr8_3:15879310-15879329 | None:intergenic | 55.0% |
| ! | GGGTGCGAGCTAAAAGTGCA+GGG | - | chr8_3:15879313-15879332 | None:intergenic | 55.0% |
| ! | AGGGTGCGAGCTAAAAGTGC+AGG | - | chr8_3:15879314-15879333 | None:intergenic | 55.0% |
| AATACCCCTGCGCTAGTTGC+AGG | + | chr8_3:15879348-15879367 | Msa1279100:intron | 55.0% | |
| ATACCCCTGCGCTAGTTGCA+GGG | + | chr8_3:15879349-15879368 | Msa1279100:intron | 55.0% | |
| ! | GTTGTGAAGGTGTGAGTGCG+AGG | - | chr8_3:15879566-15879585 | None:intergenic | 55.0% |
| !! | GGTGCTGCTAAGGACGTGTT+TGG | - | chr8_3:15877784-15877803 | None:intergenic | 55.0% |
| ACGTCCTTAGCAGCACCATC+TGG | + | chr8_3:15877787-15877806 | Msa1279100:CDS | 55.0% | |
| TCCTTAGCAGCACCATCTGG+AGG | + | chr8_3:15877790-15877809 | Msa1279100:CDS | 55.0% | |
| !! | ACCTCCAGATGGTGCTGCTA+AGG | - | chr8_3:15877794-15877813 | None:intergenic | 55.0% |
| CCTCCCATTCTACCTCCAGA+TGG | - | chr8_3:15877805-15877824 | None:intergenic | 55.0% | |
| CCATCTGGAGGTAGAATGGG+AGG | + | chr8_3:15877802-15877821 | Msa1279100:CDS | 55.0% | |
| GAAAAGTCTGGACTCGGCGA+TGG | - | chr8_3:15879923-15879942 | None:intergenic | 55.0% | |
| CGTCTTCGTCTTCATGGTCC+AGG | + | chr8_3:15877929-15877948 | Msa1279100:CDS | 55.0% | |
| CTTCGTCTTCATGGTCCAGG+AGG | + | chr8_3:15877932-15877951 | Msa1279100:CDS | 55.0% | |
| ! | ACTCGGTGGCGATGAAACTC+TGG | - | chr8_3:15880005-15880024 | None:intergenic | 55.0% |
| CTGCTGAGCCTTCTCCGTTT+AGG | + | chr8_3:15878001-15878020 | Msa1279100:CDS | 55.0% | |
| GGCTCAACCCTAAACGGAGA+AGG | - | chr8_3:15878012-15878031 | None:intergenic | 55.0% | |
| ACGGCAGGCTCAACCCTAAA+CGG | - | chr8_3:15878018-15878037 | None:intergenic | 55.0% | |
| GTTGTAAGGAAGCCCTCAGG+AGG | - | chr8_3:15880422-15880441 | None:intergenic | 55.0% | |
| ! | GTTGTGAAGGTGCGAGTGCG+AGG | - | chr8_3:15877541-15877560 | None:intergenic | 60.0% |
| GGCGATGGAGCCGAAGAACT+CGG | - | chr8_3:15877856-15877875 | None:intergenic | 60.0% | |
| ! | ACTCGGTGGCGATGGAACTC+TGG | - | chr8_3:15877965-15877984 | None:intergenic | 60.0% |
| !! | AACTCTGGACTCGGTGGCGA+TGG | - | chr8_3:15877973-15877992 | None:intergenic | 60.0% |
| ! | AGGGCGCGAGCAAAAAGTGC+AGG | + | chr8_3:15879368-15879387 | Msa1279100:intron | 60.0% |
| ! | GGGCGCGAGCAAAAAGTGCA+GGG | + | chr8_3:15879369-15879388 | Msa1279100:intron | 60.0% |
| ! | CGCGAGCAAAAAGTGCAGGG+CGG | + | chr8_3:15879372-15879391 | Msa1279100:intron | 60.0% |
| GCGCCCTGCAACTAGCGCAG+GGG | - | chr8_3:15879355-15879374 | None:intergenic | 70.0% | |
| CGCGCCCTGCAACTAGCGCA+GGG | - | chr8_3:15879356-15879375 | None:intergenic | 70.0% | |
| TCGCGCCCTGCAACTAGCGC+AGG | - | chr8_3:15879357-15879376 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 15877472 | 15880962 | 15877472 | ID=Msa1279100;Name=Msa1279100 |
| chr8_3 | mRNA | 15877472 | 15880962 | 15877472 | ID=Msa1279100-mRNA-1;Parent=Msa1279100;Name=Msa1279100-mRNA-1;_AED=0.02;_eAED=0.10;_QI=0|0.33|0.25|1|1|1|4|209|557 |
| chr8_3 | exon | 15877472 | 15878209 | 15877472 | ID=Msa1279100-mRNA-1:exon:6084;Parent=Msa1279100-mRNA-1 |
| chr8_3 | exon | 15879548 | 15880252 | 15879548 | ID=Msa1279100-mRNA-1:exon:6085;Parent=Msa1279100-mRNA-1 |
| chr8_3 | exon | 15880383 | 15880449 | 15880383 | ID=Msa1279100-mRNA-1:exon:6086;Parent=Msa1279100-mRNA-1 |
| chr8_3 | exon | 15880590 | 15880962 | 15880590 | ID=Msa1279100-mRNA-1:exon:6087;Parent=Msa1279100-mRNA-1 |
| chr8_3 | CDS | 15877472 | 15878209 | 15877472 | ID=Msa1279100-mRNA-1:cds;Parent=Msa1279100-mRNA-1 |
| chr8_3 | CDS | 15879548 | 15880252 | 15879548 | ID=Msa1279100-mRNA-1:cds;Parent=Msa1279100-mRNA-1 |
| chr8_3 | CDS | 15880383 | 15880449 | 15880383 | ID=Msa1279100-mRNA-1:cds;Parent=Msa1279100-mRNA-1 |
| chr8_3 | CDS | 15880590 | 15880753 | 15880590 | ID=Msa1279100-mRNA-1:cds;Parent=Msa1279100-mRNA-1 |
| chr8_3 | three_prime_UTR | 15880754 | 15880962 | 15880754 | ID=Msa1279100-mRNA-1:three_prime_utr;Parent=Msa1279100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
