AlfalfaGEDB | Msa0732050

M. sativa cultivar zhongmu-4 / Msa0732050

KEGG: K02991|K14498
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0080167 GO:0090351 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0732050	XP_003615157.1	88.919	370	10	1	1	370	1	339	0.0	662

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0732050	sp\|A2YNT8\|SAPK2_ORYSI	74.571	350	55	3	1	347	1	319	0.0	533

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0732050	G7KAG1	88.919	370	10	1	1	370	1	339	0.0	662

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0196670	Msa0732050	0.804978	1.666195e-49	-8.615850e-47
Msa0276100	Msa0732050	0.807182	5.726761e-50	-8.615850e-47
Msa0542560	Msa0732050	0.837409	5.287079e-57	-8.615850e-47
Msa0566350	Msa0732050	0.805691	1.181313e-49	-8.615850e-47
Msa0604290	Msa0732050	0.816085	6.631211e-52	-8.615850e-47
Msa0732050	Msa0750850	0.810304	1.231790e-50	-8.615850e-47
Msa0732050	Msa0769970	0.813580	2.381731e-51	-8.615850e-47
Msa0732050	Msa0773040	0.812592	3.924206e-51	-8.615850e-47
Msa0732050	Msa0810320	0.825551	4.406463e-54	-8.615850e-47
Msa0732050	Msa0829220	0.801233	9.919950e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0732050	MtrunA17_Chr5g0426521	88.919	370	10	1	1	370	1	339	0.0	662
Msa0732050	MtrunA17_Chr8g0381821	70.845	367	75	2	1	366	1	336	0.0	519
Msa0732050	MtrunA17_Chr4g0055451	63.661	366	94	4	2	359	3	337	1.42e-173	486
Msa0732050	MtrunA17_Chr4g0045371	66.574	359	84	3	2	355	21	348	4.90e-173	486
Msa0732050	MtrunA17_Chr3g0123791	69.706	340	67	2	2	336	3	311	7.01e-173	485
Msa0732050	MtrunA17_Chr8g0385281	67.568	333	74	2	1	330	2	303	2.04e-167	471
Msa0732050	MtrunA17_Chr3g0131061	67.868	333	73	2	1	330	1	302	1.08e-166	469
Msa0732050	MtrunA17_Chr1g0162301	67.674	331	74	2	2	330	22	321	1.59e-166	469
Msa0732050	MtrunA17_Chr2g0277501	64.773	352	89	3	1	348	1	321	8.61e-166	467
Msa0732050	MtrunA17_Chr8g0374571	61.475	366	103	3	2	365	21	350	1.22e-161	457

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0732050	AT1G78290.3	74.474	333	49	3	1	332	1	298	8.27e-180	503
Msa0732050	AT1G78290.2	74.474	333	49	3	1	332	1	298	8.27e-180	503
Msa0732050	AT4G33950.1	66.000	350	86	2	2	349	19	337	1.94e-169	477
Msa0732050	AT4G33950.2	68.580	331	71	2	2	330	19	318	2.05e-168	474
Msa0732050	AT5G66880.1	67.976	331	73	2	2	330	20	319	7.71e-166	468
Msa0732050	AT5G66880.2	67.976	331	73	2	2	330	20	319	7.71e-166	468
Msa0732050	AT5G08590.1	64.162	346	89	3	1	344	1	313	2.40e-163	461
Msa0732050	AT1G10940.1	66.667	333	77	2	1	330	1	302	3.74e-163	461
Msa0732050	AT1G60940.1	64.265	347	90	2	1	344	1	316	8.96e-162	457
Msa0732050	AT1G60940.2	64.265	347	90	2	1	344	1	316	8.96e-162	457

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Find 102 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACACATCTAGCCATTGTAA+TGG	0.551949	5_1:-43954240	Msa0732050:CDS
AAGAACAAAAGTAGGTTCTA+GGG	0.472606	5_1:+43955582	None:intergenic
AATTAATGGAAGGTGGAAGC+TGG	0.532014	5_1:-43952435	Msa0732050:CDS
ACCTCAGGTGCAATGTAAGC+TGG	0.485377	5_1:+43953376	None:intergenic
ACCTTATATGTGATGTTAGT+CGG	0.549973	5_1:-43953077	Msa0732050:CDS
ACTTCATCAACACTTTGTGA+TGG	0.536898	5_1:+43952391	None:intergenic
ACTTCTTAGTGTAGGCAGCA+TGG	0.590867	5_1:-43952314	Msa0732050:CDS
AGAACAAAAGTAGGTTCTAG+GGG	0.613840	5_1:+43955583	None:intergenic
AGATTGATGAGCATGTCCAA+AGG	0.639475	5_1:-43955227	Msa0732050:CDS
AGCGGCATACTCCATTACAA+TGG	0.672380	5_1:+43954229	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAACAAAAGTAGGTTCTA+GGG	+	chr5_1:43951997-43952016	None:intergenic	30.0%
TATGAGGTTGTCAAAGATAT+TGG	-	chr5_1:43952166-43952185	Msa0732050:three_prime_UTR	30.0%
GCTGTTAAGTTTATAGAAAG+AGG	-	chr5_1:43952247-43952266	Msa0732050:CDS	30.0%
TAAAGGTCCTAATCATTGAA+GGG	-	chr5_1:43952440-43952459	Msa0732050:CDS	30.0%
CACCTACTATCGAAAATTAT+TGG	-	chr5_1:43952631-43952650	Msa0732050:intron	30.0%
ACTATCGAAAATTATTGGAC+CGG	-	chr5_1:43952636-43952655	Msa0732050:intron	30.0%
TGGTTTAACTCAATGTCTTA+TGG	-	chr5_1:43952708-43952727	Msa0732050:intron	30.0%
TAACTCAATGTCTTATGGAT+TGG	-	chr5_1:43952713-43952732	Msa0732050:intron	30.0%
AACTCAATGTCTTATGGATT+GGG	-	chr5_1:43952714-43952733	Msa0732050:intron	30.0%
AGTGTTAGTGATACATAGAT+TGG	+	chr5_1:43952841-43952860	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	43951973	43955625	43951973	ID=Msa0732050;Name=Msa0732050
chr5_1	mRNA	43951973	43955625	43951973	ID=Msa0732050-mRNA-1;Parent=Msa0732050;Name=Msa0732050-mRNA-1;_AED=0.15;_eAED=0.15;_QI=184\|0.87\|0.88\|1\|1\|1\|9\|264\|370
chr5_1	exon	43951973	43952515	43951973	ID=Msa0732050-mRNA-1:exon:12506;Parent=Msa0732050-mRNA-1
chr5_1	exon	43952796	43952894	43952796	ID=Msa0732050-mRNA-1:exon:12505;Parent=Msa0732050-mRNA-1
chr5_1	exon	43953022	43953126	43953022	ID=Msa0732050-mRNA-1:exon:12504;Parent=Msa0732050-mRNA-1
chr5_1	exon	43953255	43953440	43953255	ID=Msa0732050-mRNA-1:exon:12503;Parent=Msa0732050-mRNA-1
chr5_1	exon	43953519	43953611	43953519	ID=Msa0732050-mRNA-1:exon:12502;Parent=Msa0732050-mRNA-1
chr5_1	exon	43953702	43953755	43953702	ID=Msa0732050-mRNA-1:exon:12501;Parent=Msa0732050-mRNA-1
chr5_1	exon	43954175	43954276	43954175	ID=Msa0732050-mRNA-1:exon:12500;Parent=Msa0732050-mRNA-1
chr5_1	exon	43955173	43955247	43955173	ID=Msa0732050-mRNA-1:exon:12499;Parent=Msa0732050-mRNA-1
chr5_1	exon	43955322	43955625	43955322	ID=Msa0732050-mRNA-1:exon:12498;Parent=Msa0732050-mRNA-1
chr5_1	five_prime_UTR	43955442	43955625	43955442	ID=Msa0732050-mRNA-1:five_prime_utr;Parent=Msa0732050-mRNA-1
chr5_1	CDS	43955322	43955441	43955322	ID=Msa0732050-mRNA-1:cds;Parent=Msa0732050-mRNA-1
chr5_1	CDS	43955173	43955247	43955173	ID=Msa0732050-mRNA-1:cds;Parent=Msa0732050-mRNA-1
chr5_1	CDS	43954175	43954276	43954175	ID=Msa0732050-mRNA-1:cds;Parent=Msa0732050-mRNA-1
chr5_1	CDS	43953702	43953755	43953702	ID=Msa0732050-mRNA-1:cds;Parent=Msa0732050-mRNA-1
chr5_1	CDS	43953519	43953611	43953519	ID=Msa0732050-mRNA-1:cds;Parent=Msa0732050-mRNA-1
chr5_1	CDS	43953255	43953440	43953255	ID=Msa0732050-mRNA-1:cds;Parent=Msa0732050-mRNA-1
chr5_1	CDS	43953022	43953126	43953022	ID=Msa0732050-mRNA-1:cds;Parent=Msa0732050-mRNA-1
chr5_1	CDS	43952796	43952894	43952796	ID=Msa0732050-mRNA-1:cds;Parent=Msa0732050-mRNA-1
chr5_1	CDS	43952237	43952515	43952237	ID=Msa0732050-mRNA-1:cds;Parent=Msa0732050-mRNA-1
chr5_1	three_prime_UTR	43951973	43952236	43951973	ID=Msa0732050-mRNA-1:three_prime_utr;Parent=Msa0732050-mRNA-1

Gene Sequence

>Msa0732050

ATGGATCGCTATGAGGTTGTCAAAGATATTGGTTCTGGGAATTTTGCTGTTGCAAAGCTAGTTAGGGACATCTTTACCAAAGAGCTTTTTGCTGTTAAGTTTATAGAAAGAGGCCAAAAGATTGATGAGCATGTCCAAAGGGAAATCATGAACCATAGATCATTGAAGCATCCTAATATTGTTAGGTTCAAAGAGGTCCTGCTAACACCAACACATCTAGCCATTGTAATGGAGTATGCCGCTGGAGGAGAACTCTTTGAGAGGATATGTAGTGCTGGTAGATTTAGTGAAGATGAGGCAAGGTTTTTCTTTCAGCAATTGATATCCGGAGTCAGTTACTGTCATTCCATGCTAATATGCCATAGAGATCTGAAGCTTGAAAACACACTCTTAGACGGAAGCACTGCGCCACGAGTCAAAATTTGCGACTTTGGTTACTCAAAGTCATCTGTGTTGCACTCGCAACCAAAGTCTACGGTAGGAACTCCAGCTTACATTGCACCTGAGGTTCTGACGATGAAAGAATACGATGGAAAGGTCGAGTCTTATTCTTCCTTATTATGGATTTGGATTATGAGCAGTGTGGCTGCAGTCAACCACATCTGGTCCGTCCTTGAAAGCTGTCAGATGATTGCAGATGTTTGGTCTTGTGGAGTCACCTTATATGTGATGTTAGTCGGCGCTTATCCTTTTGAAGACCCTGCGGATCCAAAGGACTTTAAGAAAACCATTTCCAAGATACTTAGTGTTCAGTACAAAGTTCCTGATTTCGTACGAGTTTCAATGGAATGTATAAATCTTCTATCTCAAATATTTGTGGCTAATCCTGAAAAGAGAATAACAATACCAGAAATAAAAAACCATCCATGGTTTTTGAGGAACTTACCAGTAGAATTAATGGAAGGTGGAAGCTGGCAAAGCAATGATGTAAATAATCCATCACAAAGTGTTGATGAAGTTCTGTCCATTCTACAAGAGGCAAGAAAACCTCTTAACTACCCTAAGATTGGTGGACTTCTTAGTGTAGGCAGCATGGACTTGGATGAGTTTGATCTTGATACAGATCTTGAAGATATAGAAATGTTTAGTGATTTTGTAGGCCCTCCTCTTTAA

Protein sequence

>Msa0732050

MDRYEVVKDIGSGNFAVAKLVRDIFTKELFAVKFIERGQKIDEHVQREIMNHRSLKHPNIVRFKEVLLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARFFFQQLISGVSYCHSMLICHRDLKLENTLLDGSTAPRVKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLTMKEYDGKVESYSSLLWIWIMSSVAAVNHIWSVLESCQMIADVWSCGVTLYVMLVGAYPFEDPADPKDFKKTISKILSVQYKVPDFVRVSMECINLLSQIFVANPEKRITIPEIKNHPWFLRNLPVELMEGGSWQSNDVNNPSQSVDEVLSILQEARKPLNYPKIGGLLSVGSMDLDEFDLDTDLEDIEMFSDFVGPPL*