Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390020 | XP_013455198.1 | 99.206 | 378 | 3 | 0 | 1 | 378 | 1 | 378 | 0.0 | 775 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390020 | sp|Q3E875|RGAPX_ARATH | 71.164 | 378 | 107 | 1 | 1 | 378 | 1 | 376 | 0.0 | 557 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390020 | A0A072UHJ4 | 99.206 | 378 | 3 | 0 | 1 | 378 | 1 | 378 | 0.0 | 775 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026630 | Msa1390020 | 0.802544 | 5.333846e-49 | -8.615850e-47 |
| Msa0032080 | Msa1390020 | 0.886190 | 4.241122e-72 | -8.615850e-47 |
| Msa0032100 | Msa1390020 | 0.846169 | 2.571852e-59 | -8.615850e-47 |
| Msa0045790 | Msa1390020 | 0.804551 | 2.045921e-49 | -8.615850e-47 |
| Msa0046160 | Msa1390020 | 0.806530 | 7.867202e-50 | -8.615850e-47 |
| Msa0079070 | Msa1390020 | 0.806996 | 6.271421e-50 | -8.615850e-47 |
| Msa0079370 | Msa1390020 | 0.834405 | 3.054346e-56 | -8.615850e-47 |
| Msa0079390 | Msa1390020 | 0.803661 | 3.134262e-49 | -8.615850e-47 |
| Msa1355180 | Msa1390020 | 0.812162 | 4.870281e-51 | -8.615850e-47 |
| Msa1355890 | Msa1390020 | 0.814188 | 1.749327e-51 | -8.615850e-47 |
| Msa1363390 | Msa1390020 | 0.801226 | 9.950364e-49 | -8.615850e-47 |
| Msa1390020 | Msa1419840 | 0.833505 | 5.132135e-56 | -8.615850e-47 |
| Msa1390020 | Msa1442920 | 0.815922 | 7.213490e-52 | -8.615850e-47 |
| Msa1390020 | Msa1458680 | 0.808419 | 3.126166e-50 | -8.615850e-47 |
| Msa0623070 | Msa1390020 | 0.801027 | 1.092685e-48 | -8.615850e-47 |
| Msa0641130 | Msa1390020 | 0.826220 | 3.057608e-54 | -8.615850e-47 |
| Msa0672760 | Msa1390020 | 0.995237 | 2.641144e-214 | -8.615850e-47 |
| Msa0818060 | Msa1390020 | 0.817331 | 3.486297e-52 | -8.615850e-47 |
| Msa0830230 | Msa1390020 | 0.809622 | 1.727593e-50 | -8.615850e-47 |
| Msa0831850 | Msa1390020 | 0.801602 | 8.335179e-49 | -8.615850e-47 |
| Msa0124320 | Msa1390020 | 0.804826 | 1.792984e-49 | -8.615850e-47 |
| Msa0138020 | Msa1390020 | 0.815560 | 8.683871e-52 | -8.615850e-47 |
| Msa0172080 | Msa1390020 | 0.854610 | 1.097923e-61 | -8.615850e-47 |
| Msa0189030 | Msa1390020 | 0.806260 | 8.966894e-50 | -8.615850e-47 |
| Msa0200850 | Msa1390020 | 0.843000 | 1.833634e-58 | -8.615850e-47 |
| Msa0206010 | Msa1390020 | 0.808586 | 2.879112e-50 | -8.615850e-47 |
| Msa0218370 | Msa1390020 | 0.845006 | 5.313931e-59 | -8.615850e-47 |
| Msa0219590 | Msa1390020 | 0.803311 | 3.704383e-49 | -8.615850e-47 |
| Msa0236420 | Msa1390020 | 0.810277 | 1.248860e-50 | -8.615850e-47 |
| Msa1238330 | Msa1390020 | 0.818272 | 2.137469e-52 | -8.615850e-47 |
| Msa1239620 | Msa1390020 | 0.826348 | 2.849813e-54 | -8.615850e-47 |
| Msa1291450 | Msa1390020 | 0.803002 | 4.290582e-49 | -8.615850e-47 |
| Msa1329200 | Msa1390020 | 0.813911 | 2.014267e-51 | -8.615850e-47 |
| Msa0371950 | Msa1390020 | 0.802899 | 4.507154e-49 | -8.615850e-47 |
| Msa0388730 | Msa1390020 | 0.800957 | 1.129557e-48 | -8.615850e-47 |
| Msa0411390 | Msa1390020 | 0.807193 | 5.697984e-50 | -8.615850e-47 |
| Msa0434540 | Msa1390020 | 0.825807 | 3.832325e-54 | -8.615850e-47 |
| Msa0455760 | Msa1390020 | 0.836617 | 8.425586e-57 | -8.615850e-47 |
| Msa0475600 | Msa1390020 | 0.807303 | 5.398739e-50 | -8.615850e-47 |
| Msa0999680 | Msa1390020 | 0.813890 | 2.035222e-51 | -8.615850e-47 |
| Msa1063400 | Msa1390020 | 0.811232 | 7.761713e-51 | -8.615850e-47 |
| Msa1075650 | Msa1390020 | 0.810069 | 1.384553e-50 | -8.615850e-47 |
| Msa0243480 | Msa1390020 | 0.858287 | 9.136151e-63 | -8.615850e-47 |
| Msa0270960 | Msa1390020 | 0.815995 | 6.947713e-52 | -8.615850e-47 |
| Msa0271550 | Msa1390020 | 0.812535 | 4.037794e-51 | -8.615850e-47 |
| Msa0281930 | Msa1390020 | 0.859193 | 4.900654e-63 | -8.615850e-47 |
| Msa0287870 | Msa1390020 | 0.812291 | 4.565845e-51 | -8.615850e-47 |
| Msa0306610 | Msa1390020 | 0.807487 | 4.934938e-50 | -8.615850e-47 |
| Msa0309270 | Msa1390020 | 0.804543 | 2.053730e-49 | -8.615850e-47 |
| Msa0319290 | Msa1390020 | 0.807646 | 4.566811e-50 | -8.615850e-47 |
| Msa0321080 | Msa1390020 | 0.843756 | 1.152406e-58 | -8.615850e-47 |
| Msa0326110 | Msa1390020 | 0.803528 | 3.338612e-49 | -8.615850e-47 |
| Msa0363790 | Msa1390020 | 0.838070 | 3.576510e-57 | -8.615850e-47 |
| Msa1107260 | Msa1390020 | 0.806945 | 6.427138e-50 | -8.615850e-47 |
| Msa1122150 | Msa1390020 | 0.856292 | 3.550221e-62 | -8.615850e-47 |
| Msa1129730 | Msa1390020 | 0.805433 | 1.338239e-49 | -8.615850e-47 |
| Msa1138550 | Msa1390020 | 0.804966 | 1.676130e-49 | -8.615850e-47 |
| Msa1140630 | Msa1390020 | 0.807943 | 3.948523e-50 | -8.615850e-47 |
| Msa1150900 | Msa1390020 | 0.800939 | 1.139243e-48 | -8.615850e-47 |
| Msa1160560 | Msa1390020 | 0.865953 | 4.060281e-65 | -8.615850e-47 |
| Msa1185620 | Msa1390020 | 0.828164 | 1.046775e-54 | -8.615850e-47 |
| Msa1212050 | Msa1390020 | 0.802792 | 4.743028e-49 | -8.615850e-47 |
| Msa0538670 | Msa1390020 | 0.950379 | 1.861577e-108 | -8.615850e-47 |
| Msa0545050 | Msa1390020 | 0.822619 | 2.150571e-53 | -8.615850e-47 |
| Msa0594560 | Msa1390020 | 0.842939 | 1.903268e-58 | -8.615850e-47 |
| Msa0600590 | Msa1390020 | 0.814941 | 1.191954e-51 | -8.615850e-47 |
| Msa0888260 | Msa1390020 | 0.843325 | 1.501831e-58 | -8.615850e-47 |
| Msa0915610 | Msa1390020 | 0.801956 | 7.048828e-49 | -8.615850e-47 |
| Msa0936060 | Msa1390020 | 0.803116 | 4.065126e-49 | -8.615850e-47 |
| Msa0965080 | Msa1390020 | 0.803250 | 3.812703e-49 | -8.615850e-47 |
| Msa0965290 | Msa1390020 | 0.811787 | 5.879367e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390020 | MtrunA17_Chr4g0013351 | 99.206 | 378 | 3 | 0 | 1 | 378 | 1 | 378 | 0.0 | 775 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390020 | AT5G61530.1 | 71.164 | 378 | 107 | 1 | 1 | 378 | 1 | 376 | 0.0 | 557 |
| Msa1390020 | AT5G61530.5 | 69.048 | 378 | 106 | 2 | 1 | 378 | 1 | 367 | 0.0 | 535 |
| Msa1390020 | AT5G61530.2 | 69.048 | 378 | 106 | 2 | 1 | 378 | 1 | 367 | 0.0 | 535 |
| Msa1390020 | AT5G61530.3 | 70.950 | 358 | 102 | 1 | 21 | 378 | 21 | 376 | 0.0 | 522 |
| Msa1390020 | AT5G61530.4 | 73.285 | 277 | 74 | 0 | 1 | 277 | 1 | 277 | 8.95e-150 | 424 |
Find 115 sgRNAs with CRISPR-Local
Find 399 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTTGGATATATTGGATT+TGG | 0.230100 | tig0021307:+57170 | Msa1390020:three_prime_UTR |
| TCGAAATACCTTGGTTGTAT+AGG | 0.242849 | tig0021307:-53924 | None:intergenic |
| GCAGATTACCTTATAGTTTC+AGG | 0.250957 | tig0021307:+53725 | Msa1390020:CDS |
| CAGTATTGACGATAAATTTC+AGG | 0.256557 | tig0021307:-55907 | None:intergenic |
| CAAATCCAATATATCCAAAT+TGG | 0.269962 | tig0021307:-57169 | None:intergenic |
| TGCATCTTCTCTTATTCCTT+TGG | 0.272162 | tig0021307:+56976 | Msa1390020:CDS |
| AAGTCGGTGGGCACGTCTTC+AGG | 0.278314 | tig0021307:+52911 | Msa1390020:CDS |
| CGAAATACCTTGGTTGTATA+GGG | 0.288605 | tig0021307:-53923 | None:intergenic |
| GATATACCTTTCACTAAAAC+TGG | 0.308224 | tig0021307:-57272 | None:intergenic |
| TAAATCTGAAGGGGACAAAA+AGG | 0.312157 | tig0021307:+53882 | Msa1390020:CDS |
| CAAGTAGTTGAACCAGGTTC+TGG | 0.316941 | tig0021307:-55970 | None:intergenic |
| AAGAAGAGTTTAGAGAGATA+TGG | 0.324615 | tig0021307:-51398 | None:intergenic |
| ATTCTTTGACTTGGATGTAT+TGG | 0.329262 | tig0021307:+57129 | Msa1390020:three_prime_UTR |
| TCAGAAGTCACTTCTCAATA+AGG | 0.338907 | tig0021307:+54248 | Msa1390020:CDS |
| TGACTTGGATGTATTGGATT+TGG | 0.341216 | tig0021307:+57135 | Msa1390020:three_prime_UTR |
| CTGAAATTTATCGTCAATAC+TGG | 0.352388 | tig0021307:+55908 | Msa1390020:CDS |
| AAAAGCTACCTGAAACTATA+AGG | 0.355497 | tig0021307:-53733 | None:intergenic |
| ACAAGAGCTGCTACATCAAC+TGG | 0.363894 | tig0021307:-54057 | None:intergenic |
| GAGAGATATGGATTGAGAAT+AGG | 0.364756 | tig0021307:-51386 | None:intergenic |
| TCCAATGTGGTCAGTGGCTC+AGG | 0.371441 | tig0021307:-54102 | None:intergenic |
| CAGAACCTGGTTCAACTACT+TGG | 0.372001 | tig0021307:+55971 | Msa1390020:CDS |
| TCAACTGGATTTGAGCCTTC+TGG | 0.372040 | tig0021307:-54042 | None:intergenic |
| TTCTGGATTCAAGCTCTGTT+TGG | 0.372743 | tig0021307:-55953 | None:intergenic |
| CCTTTATTGATTCTTTGACT+TGG | 0.375766 | tig0021307:+57120 | Msa1390020:three_prime_UTR |
| GAATCAGCGGGAACGTTTGT+TGG | 0.388056 | tig0021307:+52822 | Msa1390020:CDS |
| CCACATTACCTCTTCAACCT+TGG | 0.389178 | tig0021307:-53048 | None:intergenic |
| TCTCTTATTCCTTTGGATGA+AGG | 0.409750 | tig0021307:+56983 | Msa1390020:CDS |
| ACCTGTTATCATGTGGCAAA+AGG | 0.410592 | tig0021307:+55876 | Msa1390020:CDS |
| TTGACTAGTATCTGAGGAAT+AGG | 0.414328 | tig0021307:-53698 | None:intergenic |
| GACAAAAGAGAAGGTGGTTG+TGG | 0.420557 | tig0021307:+53019 | Msa1390020:CDS |
| CCATGAGAAACATACTTAAG+AGG | 0.422179 | tig0021307:+54166 | Msa1390020:CDS |
| CCAAGTCAAAGAATCAATAA+AGG | 0.427250 | tig0021307:-57120 | None:intergenic |
| GCTGAAGTGGCGGGAAAAGT+TGG | 0.432879 | tig0021307:+52876 | Msa1390020:CDS |
| TATAGCAGCTATGTTTATGC+TGG | 0.434797 | tig0021307:+57228 | Msa1390020:three_prime_UTR |
| ACTTTGTTCAGATGGATTCT+CGG | 0.437283 | tig0021307:+55833 | Msa1390020:intron |
| TTCCTGAGGAGAGGTTTGTC+AGG | 0.437700 | tig0021307:+52996 | Msa1390020:CDS |
| ACAAAAGAGAAGGTGGTTGT+GGG | 0.439320 | tig0021307:+53020 | Msa1390020:CDS |
| TCGATTGCACCGAAGTCAAC+TGG | 0.452453 | tig0021307:-57010 | None:intergenic |
| CCTCTTAAGTATGTTTCTCA+TGG | 0.456228 | tig0021307:-54166 | None:intergenic |
| TCGGAGCCTTGCAATGGAAA+TGG | 0.458451 | tig0021307:+55852 | Msa1390020:CDS |
| CTGAAGTGGCGGGAAAAGTT+GGG | 0.470673 | tig0021307:+52877 | Msa1390020:CDS |
| CTCTGTACAGTAATCTCAAT+CGG | 0.472832 | tig0021307:-53659 | None:intergenic |
| AATGATCGTCACGTCCAGAT+TGG | 0.476710 | tig0021307:-57204 | None:intergenic |
| TGTACAGGATCGAATGATAT+CGG | 0.477600 | tig0021307:+52953 | Msa1390020:CDS |
| TGGGGAAACATGTTGGGTAC+TGG | 0.483946 | tig0021307:+57248 | Msa1390020:three_prime_UTR |
| CTATACCTTGTTCGATTCAG+TGG | 0.487225 | tig0021307:-51459 | None:intergenic |
| GTTTCTCATGGAATATATGT+TGG | 0.487803 | tig0021307:-54154 | None:intergenic |
| CTCACCTCAGTGGCAAGATA+AGG | 0.488288 | tig0021307:+52665 | Msa1390020:CDS |
| CAGATGCCAACGAGACAGTC+TGG | 0.491595 | tig0021307:+57074 | Msa1390020:CDS |
| ATAGCAGCTATGTTTATGCT+GGG | 0.496784 | tig0021307:+57229 | Msa1390020:three_prime_UTR |
| CCTGTTATCATGTGGCAAAA+GGG | 0.504737 | tig0021307:+55877 | Msa1390020:CDS |
| AGACATTGAAAGATGGCAAA+AGG | 0.507271 | tig0021307:+53259 | Msa1390020:CDS |
| GGATTCAAGCTCTGTTTGGA+AGG | 0.507953 | tig0021307:-55949 | None:intergenic |
| AGCGGGAACGTTTGTTGGCG+AGG | 0.509352 | tig0021307:+52827 | Msa1390020:CDS |
| TCCCTGACAAACCTCTCCTC+AGG | 0.510117 | tig0021307:-52998 | None:intergenic |
| GTCTACAAGACATGCTGTAC+AGG | 0.511268 | tig0021307:+52938 | Msa1390020:CDS |
| ATATCGGCTGCTGCTACGAC+TGG | 0.522526 | tig0021307:+52969 | Msa1390020:CDS |
| GGTCAAGCTTAAAGAAGCTA+AGG | 0.542829 | tig0021307:+52800 | Msa1390020:CDS |
| TCATTTCCAGACTGTCTCGT+TGG | 0.544319 | tig0021307:-57080 | None:intergenic |
| TTATGCTGGGGAAACATGTT+GGG | 0.545272 | tig0021307:+57242 | Msa1390020:three_prime_UTR |
| AAGTAACAACAAAATTATAA+CGG | 0.546617 | tig0021307:-51333 | None:intergenic |
| TCATGATTGCATATATATGA+AGG | 0.549002 | tig0021307:+57473 | Msa1390020:three_prime_UTR |
| CAGCGTGAACTATATGACTC+TGG | 0.554197 | tig0021307:+54194 | Msa1390020:CDS |
| CAGAGCTTGAATCCAGAACC+TGG | 0.554738 | tig0021307:+55958 | Msa1390020:CDS |
| CTCTTCCACTGAATCGAACA+AGG | 0.558633 | tig0021307:+51454 | Msa1390020:five_prime_UTR |
| AATAAGAGAAGATGCATCCA+TGG | 0.561442 | tig0021307:-56969 | None:intergenic |
| ACTACTTGGGACATGCTCGC+TGG | 0.561653 | tig0021307:+55985 | Msa1390020:CDS |
| GAGCTTTATAATGAGATCAA+AGG | 0.565606 | tig0021307:+54123 | Msa1390020:CDS |
| AAAGAGTAATGTAGCTGAAG+TGG | 0.566162 | tig0021307:+52863 | Msa1390020:CDS |
| TTTATGCTGGGGAAACATGT+TGG | 0.566531 | tig0021307:+57241 | Msa1390020:three_prime_UTR |
| TCAACTGCTGCAGTGCCAGA+AGG | 0.567311 | tig0021307:+54027 | Msa1390020:CDS |
| CAAAAGAGAAGGTGGTTGTG+GGG | 0.567728 | tig0021307:+53021 | Msa1390020:CDS |
| CAGGTGCCATTTCCATTGCA+AGG | 0.570190 | tig0021307:-55858 | None:intergenic |
| AAAGAAGCTAAGGAATCAGC+GGG | 0.570777 | tig0021307:+52810 | Msa1390020:CDS |
| ACTGGCATGCCTTCATCCAA+AGG | 0.571508 | tig0021307:-56992 | None:intergenic |
| TCCTGAGCCACTGACCACAT+TGG | 0.580818 | tig0021307:+54101 | Msa1390020:CDS |
| GGATTCTCGGAGCCTTGCAA+TGG | 0.586088 | tig0021307:+55846 | Msa1390020:CDS |
| CAGGGAGTTGCTAAAACTGA+CGG | 0.591352 | tig0021307:+53366 | Msa1390020:intron |
| AGAACCTGGTTCAACTACTT+GGG | 0.591658 | tig0021307:+55972 | Msa1390020:CDS |
| AGTAATGTAGCTGAAGTGGC+GGG | 0.592358 | tig0021307:+52867 | Msa1390020:CDS |
| GAAGGCATGCCAGTTGACTT+CGG | 0.597065 | tig0021307:+57001 | Msa1390020:CDS |
| TCCTGAGGAGAGGTTTGTCA+GGG | 0.599140 | tig0021307:+52997 | Msa1390020:CDS |
| TCTTGACAGACATTGAAAGA+TGG | 0.604203 | tig0021307:+53252 | Msa1390020:CDS |
| GTCAGGGACAAAAGAGAAGG+TGG | 0.606025 | tig0021307:+53013 | Msa1390020:CDS |
| CACTGAGGTGAGATAACAGA+AGG | 0.606186 | tig0021307:-52654 | None:intergenic |
| GGACGGTATTCAAAAGTCGG+TGG | 0.609947 | tig0021307:+52898 | Msa1390020:CDS |
| TTAGTGATGAGAGTTTCTGC+AGG | 0.619157 | tig0021307:-57376 | None:intergenic |
| CTACGACTGGTGCATTCCTG+AGG | 0.619975 | tig0021307:+52982 | Msa1390020:CDS |
| GGTGGTTGTGGGGAAATCCA+AGG | 0.621706 | tig0021307:+53031 | Msa1390020:CDS |
| TAAAGCTCCAATGTGGTCAG+TGG | 0.623875 | tig0021307:-54108 | None:intergenic |
| TTGGGACGGTATTCAAAAGT+CGG | 0.624690 | tig0021307:+52895 | Msa1390020:CDS |
| GACGGTATTCAAAAGTCGGT+GGG | 0.626060 | tig0021307:+52899 | Msa1390020:CDS |
| GAGTAATGTAGCTGAAGTGG+CGG | 0.626295 | tig0021307:+52866 | Msa1390020:CDS |
| ATGTCCCAAGTAGTTGAACC+AGG | 0.630070 | tig0021307:-55976 | None:intergenic |
| GGGGAAATCCAAGGTTGAAG+AGG | 0.631245 | tig0021307:+53040 | Msa1390020:CDS |
| GCACAATTGACTAGTATCTG+AGG | 0.633991 | tig0021307:-53704 | None:intergenic |
| ACTGGTGCATTCCTGAGGAG+AGG | 0.636539 | tig0021307:+52987 | Msa1390020:CDS |
| TGCAGACGAGAGTGAAGCCA+TGG | 0.637614 | tig0021307:+56952 | Msa1390020:intron |
| TGTACAGCATGTCTTGTAGA+CGG | 0.639114 | tig0021307:-52936 | None:intergenic |
| CAGAGTCATATAGTTCACGC+TGG | 0.642929 | tig0021307:-54193 | None:intergenic |
| TTTGTCAGGGACAAAAGAGA+AGG | 0.643608 | tig0021307:+53010 | Msa1390020:CDS |
| ATGTGGTCAGTGGCTCAGGA+AGG | 0.645915 | tig0021307:-54098 | None:intergenic |
| TAAAGAAGCTAAGGAATCAG+CGG | 0.649713 | tig0021307:+52809 | Msa1390020:CDS |
| GTTTGTTGGCGAGGTCACAA+AGG | 0.656145 | tig0021307:+52836 | Msa1390020:CDS |
| CTCGCCTTATCTTGCCACTG+AGG | 0.661591 | tig0021307:-52669 | None:intergenic |
| TAGCAGCTATGTTTATGCTG+GGG | 0.665487 | tig0021307:+57230 | Msa1390020:three_prime_UTR |
| CGATTGAGATTACTGTACAG+AGG | 0.667858 | tig0021307:+53660 | Msa1390020:CDS |
| CAGTGGCAAGATAAGGCGAG+TGG | 0.672268 | tig0021307:+52672 | Msa1390020:CDS |
| ACTAGCACGGAGCAAAAGTG+CGG | 0.688718 | tig0021307:-54226 | None:intergenic |
| AGTGGCGGGAAAAGTTGGGA+CGG | 0.689419 | tig0021307:+52881 | Msa1390020:CDS |
| GAAGTGACTTCTGACTAGCA+CGG | 0.698389 | tig0021307:-54239 | None:intergenic |
| CTCATTATAAAGCTCCAATG+TGG | 0.698623 | tig0021307:-54115 | None:intergenic |
| TTGGTTGCCCTATACAACCA+AGG | 0.705842 | tig0021307:+53916 | Msa1390020:CDS |
| CTTCTGTTATCTCACCTCAG+TGG | 0.723347 | tig0021307:+52655 | Msa1390020:CDS |
| AAATGGCACCTGTTATCATG+TGG | 0.743338 | tig0021307:+55869 | Msa1390020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTATAGTTTTTTTTTTTTAT+CGG | + | tig0021307:51476-51495 | Msa1390020:intron | 10.0% |
| !! | TAACTTAAATGAAAATAATT+TGG | + | tig0021307:52153-52172 | Msa1390020:intron | 10.0% |
| !! | TATAAAATTCGTAAAATAAA+AGG | - | tig0021307:52468-52487 | None:intergenic | 10.0% |
| !! | TATATATAAATTTAATGTAG+GGG | + | tig0021307:52779-52798 | Msa1390020:intron | 10.0% |
| !! | TACTATTTAATAAATTTGTA+TGG | + | tig0021307:54352-54371 | Msa1390020:intron | 10.0% |
| !! | AATTATAAAAATTCAAAAGT+GGG | + | tig0021307:56465-56484 | Msa1390020:intron | 10.0% |
| !! | AAGTAACAACAAAATTATAA+CGG | - | tig0021307:51336-51355 | None:intergenic | 15.0% |
| !!! | TATTGATTAATTAGAGATTA+TGG | + | tig0021307:51732-51751 | Msa1390020:intron | 15.0% |
| !! | ATTAAATAGTTTATTTGAAC+AGG | + | tig0021307:52256-52275 | Msa1390020:intron | 15.0% |
| !! | ATTATATCATTAAAGTTAGA+CGG | + | tig0021307:53969-53988 | Msa1390020:intron | 15.0% |
| !! | TATTTAATAAATTTGTATGG+TGG | + | tig0021307:54355-54374 | Msa1390020:intron | 15.0% |
| !!! | AGTAATTAATTTTTTTTGGT+TGG | + | tig0021307:54439-54458 | Msa1390020:intron | 15.0% |
| !! | AATCAAACAACAAAATAATA+AGG | - | tig0021307:54948-54967 | None:intergenic | 15.0% |
| !! | TTACATAAAATTCATTATGT+AGG | + | tig0021307:56039-56058 | Msa1390020:intron | 15.0% |
| !!! | TCTTTTAAATGTTTTCTATT+GGG | - | tig0021307:56275-56294 | None:intergenic | 15.0% |
| !! | CAATTATAAAAATTCAAAAG+TGG | + | tig0021307:56464-56483 | Msa1390020:intron | 15.0% |
| !! | AAACAAGAAAATAAGATATA+TGG | - | tig0021307:56926-56945 | None:intergenic | 15.0% |
| !!! | TTCACGTAGAATATTTTTTA+TGG | + | tig0021307:51593-51612 | Msa1390020:intron | 20.0% |
| !!! | TAGAATATTTTTTATGGTCA+AGG | + | tig0021307:51599-51618 | Msa1390020:intron | 20.0% |
| !! | TTAGTTATCAATTATCATGA+AGG | - | tig0021307:51709-51728 | None:intergenic | 20.0% |
| !! | AAATATAATTAGTGCTAACT+TGG | - | tig0021307:53124-53143 | None:intergenic | 20.0% |
| !!! | CATTTTTTCTTTGTTTTAGT+TGG | + | tig0021307:53174-53193 | Msa1390020:intron | 20.0% |
| !!! | TTTTTTAGAATGATCTATAC+TGG | - | tig0021307:53321-53340 | None:intergenic | 20.0% |
| !!! | CATATCTTTTTAAATCTGAA+GGG | + | tig0021307:53872-53891 | Msa1390020:CDS | 20.0% |
| !!! | ATATCTTTTTAAATCTGAAG+GGG | + | tig0021307:53873-53892 | Msa1390020:CDS | 20.0% |
| !!! | TAATTACTTAATTGCGTTTT+AGG | - | tig0021307:54427-54446 | None:intergenic | 20.0% |
| !!! | ATTCAATTTACTTTTGACAT+GGG | - | tig0021307:54479-54498 | None:intergenic | 20.0% |
| !!! | TCTATGTTTCTTTTTTTGTT+TGG | + | tig0021307:54498-54517 | Msa1390020:intron | 20.0% |
| !!! | TTGATTTGTTTTCATATGTT+AGG | + | tig0021307:54564-54583 | Msa1390020:intron | 20.0% |
| !! | TTTAACAAAATTGGATTTGA+CGG | + | tig0021307:54594-54613 | Msa1390020:intron | 20.0% |
| !! | AGAAAATTAAGTCTACAAAA+CGG | - | tig0021307:54634-54653 | None:intergenic | 20.0% |
| !!! | TTTTTCAAATGTTTTACAAG+TGG | - | tig0021307:55006-55025 | None:intergenic | 20.0% |
| !!! | TCTTATACTATTTGAAATGT+AGG | + | tig0021307:55028-55047 | Msa1390020:intron | 20.0% |
| !!! | CTTATACTATTTGAAATGTA+GGG | + | tig0021307:55029-55048 | Msa1390020:intron | 20.0% |
| !!! | GTTTCTTTTATAGTTTTTCT+AGG | - | tig0021307:55293-55312 | None:intergenic | 20.0% |
| !! | ACTTTCTTCTAAATTTCTAA+TGG | + | tig0021307:55473-55492 | Msa1390020:intron | 20.0% |
| !!! | ATTTTGTTTTAACTTCTTGA+AGG | + | tig0021307:55554-55573 | Msa1390020:intron | 20.0% |
| !! | ATGTAAATAATCACATGTTT+AGG | - | tig0021307:56025-56044 | None:intergenic | 20.0% |
| !! | ATTTCTATATTGACAATTTG+AGG | + | tig0021307:56175-56194 | Msa1390020:intron | 20.0% |
| !!! | CTCTTTTAAATGTTTTCTAT+TGG | - | tig0021307:56276-56295 | None:intergenic | 20.0% |
| !! | TAGTCAATATAGAAATATTC+TGG | + | tig0021307:56633-56652 | Msa1390020:intron | 20.0% |
| !!! | AAAGTGCAATTGAAATATTT+TGG | + | tig0021307:56666-56685 | Msa1390020:intron | 20.0% |
| !!! | AAAGGTATATCTTCTTTTTT+AGG | + | tig0021307:57284-57303 | Msa1390020:three_prime_UTR | 20.0% |
| !!! | TTTATTTCTGTTAATTCTCC+AGG | + | tig0021307:51856-51875 | Msa1390020:intron | 25.0% |
| ! | ATAAGCACTTATCATGATAA+GGG | + | tig0021307:51943-51962 | Msa1390020:intron | 25.0% |
| ! | TTATTTGAACAGGAACTTAA+TGG | + | tig0021307:52266-52285 | Msa1390020:intron | 25.0% |
| !!! | TAAGGGTATTTTGAAATTCA+TGG | - | tig0021307:52366-52385 | None:intergenic | 25.0% |
| ! | AAAATACCCTTACAAAAGTT+GGG | + | tig0021307:52374-52393 | Msa1390020:intron | 25.0% |
| ! | TAACTACTTCACTTCTATAT+AGG | + | tig0021307:52572-52591 | Msa1390020:intron | 25.0% |
| !! | ATAAACAAACAAAGAGCATA+CGG | - | tig0021307:52762-52781 | None:intergenic | 25.0% |
| !!! | TATTTCCCTTTTTTTTTGCA+GGG | + | tig0021307:53348-53367 | Msa1390020:intron | 25.0% |
| ! | ACAAGTGAGTATTTATTTGA+CGG | + | tig0021307:53414-53433 | Msa1390020:intron | 25.0% |
| ! | AGTATTTATTTGACGGAAAT+GGG | + | tig0021307:53421-53440 | Msa1390020:intron | 25.0% |
| ! | CCTTCAGATTTAAAAAGATA+TGG | - | tig0021307:53874-53893 | None:intergenic | 25.0% |
| !! | CCATATCTTTTTAAATCTGA+AGG | + | tig0021307:53871-53890 | Msa1390020:CDS | 25.0% |
| ! | AAAGAATAATCGAAATACCT+TGG | - | tig0021307:53936-53955 | None:intergenic | 25.0% |
| !!! | GATTCAATTTACTTTTGACA+TGG | - | tig0021307:54480-54499 | None:intergenic | 25.0% |
| ! | GGTCATGTATTTAACAAAAT+TGG | + | tig0021307:54585-54604 | Msa1390020:intron | 25.0% |
| !!! | ATGTTGTTTTCTCTAATTTG+AGG | + | tig0021307:54682-54701 | Msa1390020:intron | 25.0% |
| !!! | TGTTGTTTTCTCTAATTTGA+GGG | + | tig0021307:54683-54702 | Msa1390020:intron | 25.0% |
| ! | TATGAAGTCATACATATGAT+TGG | + | tig0021307:55076-55095 | Msa1390020:intron | 25.0% |
| ! | AAATGACAACATTAGAGAAT+TGG | + | tig0021307:55131-55150 | Msa1390020:intron | 25.0% |
| ! | AATGACAACATTAGAGAATT+GGG | + | tig0021307:55132-55151 | Msa1390020:intron | 25.0% |
| !! | TATACCATCTTTTCTACTAT+AGG | - | tig0021307:55164-55183 | None:intergenic | 25.0% |
| !! | TGGTTTTTAATAGAACACTA+TGG | + | tig0021307:55351-55370 | Msa1390020:intron | 25.0% |
| ! | GAAGAAAGTCTAAATAAACT+AGG | - | tig0021307:55462-55481 | None:intergenic | 25.0% |
| !!! | AATTTCTAATGGTCTTATTG+TGG | + | tig0021307:55484-55503 | Msa1390020:intron | 25.0% |
| !!! | ATTTCTAATGGTCTTATTGT+GGG | + | tig0021307:55485-55504 | Msa1390020:intron | 25.0% |
| ! | CAAAAGTTTGATTGTTCTTA+AGG | - | tig0021307:55757-55776 | None:intergenic | 25.0% |
| !!! | AAAAAAACCACTTTTTGGAA+GGG | - | tig0021307:56313-56332 | None:intergenic | 25.0% |
| !!! | AAAAAAAACCACTTTTTGGA+AGG | - | tig0021307:56314-56333 | None:intergenic | 25.0% |
| !!! | TAGGAAAAAAAACCACTTTT+TGG | - | tig0021307:56318-56337 | None:intergenic | 25.0% |
| !! | AAAAGTCTTTTCTCATTACT+TGG | - | tig0021307:56373-56392 | None:intergenic | 25.0% |
| ! | ACTCTAATCACAAAATATTC+TGG | + | tig0021307:56809-56828 | Msa1390020:intron | 25.0% |
| !! | AAAAAAGTTAGTTTAACTGC+TGG | + | tig0021307:56839-56858 | Msa1390020:intron | 25.0% |
| ! | ACTTCTATTGAACTAAAACT+TGG | + | tig0021307:56869-56888 | Msa1390020:intron | 25.0% |
| !! | TGGAATAATGTTTTCCAATT+TGG | + | tig0021307:57155-57174 | Msa1390020:three_prime_UTR | 25.0% |
| !! | GTTTTCCAATTTGGATATAT+TGG | + | tig0021307:57164-57183 | Msa1390020:three_prime_UTR | 25.0% |
| ! | CAAATCCAATATATCCAAAT+TGG | - | tig0021307:57172-57191 | None:intergenic | 25.0% |
| ! | CAATTTGGATATATTGGATT+TGG | + | tig0021307:57170-57189 | Msa1390020:three_prime_UTR | 25.0% |
| !!! | TATTTTATTTTTTGGGTTGC+AGG | + | tig0021307:57315-57334 | Msa1390020:three_prime_UTR | 25.0% |
| !!! | ATTTTATTTTTTGGGTTGCA+GGG | + | tig0021307:57316-57335 | Msa1390020:three_prime_UTR | 25.0% |
| !! | TCACTAATGTACTTTTATTG+TGG | + | tig0021307:57392-57411 | Msa1390020:three_prime_UTR | 25.0% |
| !!! | TTGTGGTGTGATATTTTTTT+TGG | + | tig0021307:57409-57428 | Msa1390020:three_prime_UTR | 25.0% |
| ! | TCATGATTGCATATATATGA+AGG | + | tig0021307:57473-57492 | Msa1390020:three_prime_UTR | 25.0% |
| AAGAAGAGTTTAGAGAGATA+TGG | - | tig0021307:51401-51420 | None:intergenic | 30.0% | |
| CATAAGCACTTATCATGATA+AGG | + | tig0021307:51942-51961 | Msa1390020:intron | 30.0% | |
| ! | TTAAGTTGTTTATCCAAACG+TGG | + | tig0021307:51986-52005 | Msa1390020:intron | 30.0% |
| AATTATGCGAGCTTATCTAT+AGG | + | tig0021307:52023-52042 | Msa1390020:intron | 30.0% | |
| TTACACAGACAGTGTATTAT+TGG | - | tig0021307:52292-52311 | None:intergenic | 30.0% | |
| AAAAAATGGTGGTCTCTTAT+TGG | - | tig0021307:52334-52353 | None:intergenic | 30.0% | |
| !!! | GGTATTTTGAAATTCATGGT+AGG | - | tig0021307:52362-52381 | None:intergenic | 30.0% |
| CAAAATACCCTTACAAAAGT+TGG | + | tig0021307:52373-52392 | Msa1390020:intron | 30.0% | |
| ! | GGATTTTCATTAGATGTTAC+TGG | + | tig0021307:52414-52433 | Msa1390020:intron | 30.0% |
| TTGTTTAAGTGAATGCATGA+TGG | + | tig0021307:52497-52516 | Msa1390020:intron | 30.0% | |
| ! | TTGACTAACTTGTCTTTGAT+GGG | + | tig0021307:52547-52566 | Msa1390020:intron | 30.0% |
| TTACAAAAACAACTTGACGA+CGG | - | tig0021307:52616-52635 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTGTAAGTAGCTTC+TGG | + | tig0021307:52624-52643 | Msa1390020:five_prime_UTR | 30.0% |
| !! | TGTTTTTGTAAGTAGCTTCT+GGG | + | tig0021307:52625-52644 | Msa1390020:five_prime_UTR | 30.0% |
| ATACGGTAGTAATCAAGAAA+AGG | - | tig0021307:52745-52764 | None:intergenic | 30.0% | |
| ! | GTGGTTGTGTAAATGATTTT+TGG | + | tig0021307:53067-53086 | Msa1390020:intron | 30.0% |
| GTCTCATTATCATTTGTTTC+AGG | + | tig0021307:53196-53215 | Msa1390020:intron | 30.0% | |
| TCATTATCATTTGTTTCAGG+TGG | + | tig0021307:53199-53218 | Msa1390020:intron | 30.0% | |
| !!! | CTATTTCCCTTTTTTTTTGC+AGG | + | tig0021307:53347-53366 | Msa1390020:intron | 30.0% |
| TACTCACTTGTTCAATTATG+TGG | - | tig0021307:53405-53424 | None:intergenic | 30.0% | |
| GAGTATTTATTTGACGGAAA+TGG | + | tig0021307:53420-53439 | Msa1390020:intron | 30.0% | |
| ACATAGATAACAAAAGACTC+TGG | - | tig0021307:53466-53485 | None:intergenic | 30.0% | |
| AAAAGCTACCTGAAACTATA+AGG | - | tig0021307:53736-53755 | None:intergenic | 30.0% | |
| !!! | AGGTAGCTTTTTTTAGAGTA+AGG | + | tig0021307:53745-53764 | Msa1390020:intron | 30.0% |
| AAGAAACATAGACTGATACA+TGG | - | tig0021307:53779-53798 | None:intergenic | 30.0% | |
| CCTACATATAATTACAACTG+TGG | - | tig0021307:53841-53860 | None:intergenic | 30.0% | |
| CCACAGTTGTAATTATATGT+AGG | + | tig0021307:53838-53857 | Msa1390020:intron | 30.0% | |
| GGTATTTCGATTATTCTTTC+AGG | + | tig0021307:53937-53956 | Msa1390020:intron | 30.0% | |
| ! | GAGCTTTATAATGAGATCAA+AGG | + | tig0021307:54123-54142 | Msa1390020:CDS | 30.0% |
| GTTTCTCATGGAATATATGT+TGG | - | tig0021307:54157-54176 | None:intergenic | 30.0% | |
| AGTGAGTGTGAATAATTGTT+TGG | + | tig0021307:54286-54305 | Msa1390020:intron | 30.0% | |
| ! | AATAATTGTTTGGTGGAAGT+GGG | + | tig0021307:54296-54315 | Msa1390020:intron | 30.0% |
| !!! | ATTTGTATGGTGGATTCTTT+TGG | + | tig0021307:54365-54384 | Msa1390020:intron | 30.0% |
| ATAAGAGAGTGAAGAGATTT+GGG | - | tig0021307:54391-54410 | None:intergenic | 30.0% | |
| TATAAGAGAGTGAAGAGATT+TGG | - | tig0021307:54392-54411 | None:intergenic | 30.0% | |
| !!! | ACTTAATTGCGTTTTAGGAA+AGG | - | tig0021307:54422-54441 | None:intergenic | 30.0% |
| AAAGAAATGAGCAATTCAGA+TGG | - | tig0021307:54536-54555 | None:intergenic | 30.0% | |
| AAAATTGGATTTGACGGTTA+TGG | + | tig0021307:54600-54619 | Msa1390020:intron | 30.0% | |
| !! | GTTGTTTTCTCTAATTTGAG+GGG | + | tig0021307:54684-54703 | Msa1390020:intron | 30.0% |
| AACCTCTTGTGTAAAAAACA+AGG | + | tig0021307:54775-54794 | Msa1390020:intron | 30.0% | |
| !!! | TACCTTGTTTTTTACACAAG+AGG | - | tig0021307:54780-54799 | None:intergenic | 30.0% |
| CTTGTGTAAAAAACAAGGTA+CGG | + | tig0021307:54780-54799 | Msa1390020:intron | 30.0% | |
| GAATGTTGTGAAGAATATGA+AGG | - | tig0021307:54905-54924 | None:intergenic | 30.0% | |
| GTTTGATTAGAGACTTGAAA+CGG | + | tig0021307:54960-54979 | Msa1390020:intron | 30.0% | |
| ATGACAACATTAGAGAATTG+GGG | + | tig0021307:55133-55152 | Msa1390020:intron | 30.0% | |
| AGAACCTATAGTAGAAAAGA+TGG | + | tig0021307:55157-55176 | Msa1390020:intron | 30.0% | |
| GACCTATGAATTATGTAGTA+AGG | + | tig0021307:55219-55238 | Msa1390020:intron | 30.0% | |
| CTCCTTACTACATAATTCAT+AGG | - | tig0021307:55224-55243 | None:intergenic | 30.0% | |
| ! | TGGGTTTTCATTGTTTGATT+TGG | + | tig0021307:55504-55523 | Msa1390020:intron | 30.0% |
| !! | GGGTTTTCATTGTTTGATTT+GGG | + | tig0021307:55505-55524 | Msa1390020:intron | 30.0% |
| GAGAGAAAAAGACTAATAGA+AGG | - | tig0021307:55608-55627 | None:intergenic | 30.0% | |
| ACAAAGCAAGTTAAACAACT+CGG | - | tig0021307:55654-55673 | None:intergenic | 30.0% | |
| ! | GTTTTTATTCTCCGATCAAA+TGG | + | tig0021307:55727-55746 | Msa1390020:intron | 30.0% |
| GTTAGATTCTACATGCAAAT+TGG | + | tig0021307:55783-55802 | Msa1390020:intron | 30.0% | |
| !! | CAGTATTGACGATAAATTTC+AGG | - | tig0021307:55910-55929 | None:intergenic | 30.0% |
| CTGAAATTTATCGTCAATAC+TGG | + | tig0021307:55908-55927 | Msa1390020:CDS | 30.0% | |
| CCTCATATATTATGACTTAG+AGG | - | tig0021307:56089-56108 | None:intergenic | 30.0% | |
| CCTCTAAGTCATAATATATG+AGG | + | tig0021307:56086-56105 | Msa1390020:intron | 30.0% | |
| AGTCATAATATATGAGGTAG+AGG | + | tig0021307:56092-56111 | Msa1390020:intron | 30.0% | |
| ATATTGACAATTTGAGGAGA+AGG | + | tig0021307:56181-56200 | Msa1390020:intron | 30.0% | |
| CATATGATCAGATCCTATAT+GGG | - | tig0021307:56217-56236 | None:intergenic | 30.0% | |
| ATCATATGGAGGATAACTTT+GGG | + | tig0021307:56229-56248 | Msa1390020:intron | 30.0% | |
| GATCAATTGAAGCTATCATT+AGG | - | tig0021307:56337-56356 | None:intergenic | 30.0% | |
| AAATTCAAAAGTGGGATATC+AGG | + | tig0021307:56473-56492 | Msa1390020:intron | 30.0% | |
| AATTCAAAAGTGGGATATCA+GGG | + | tig0021307:56474-56493 | Msa1390020:intron | 30.0% | |
| ! | CAAATCCTTTTAGACAACTT+TGG | - | tig0021307:56505-56524 | None:intergenic | 30.0% |
| TTGAACAGTTAAACTTCAGT+AGG | - | tig0021307:56541-56560 | None:intergenic | 30.0% | |
| CCAAGTCAAAGAATCAATAA+AGG | - | tig0021307:57123-57142 | None:intergenic | 30.0% | |
| !! | CCTTTATTGATTCTTTGACT+TGG | + | tig0021307:57120-57139 | Msa1390020:three_prime_UTR | 30.0% |
| !! | ATTCTTTGACTTGGATGTAT+TGG | + | tig0021307:57129-57148 | Msa1390020:three_prime_UTR | 30.0% |
| ! | TGGAATAATGTTTTCCAATC+TGG | + | tig0021307:57190-57209 | Msa1390020:three_prime_UTR | 30.0% |
| GATATACCTTTCACTAAAAC+TGG | - | tig0021307:57275-57294 | None:intergenic | 30.0% | |
| !!! | TGGTGTGATATTTTTTTTGG+TGG | + | tig0021307:57412-57431 | Msa1390020:three_prime_UTR | 30.0% |
| ! | GAGAGATATGGATTGAGAAT+AGG | - | tig0021307:51389-51408 | None:intergenic | 35.0% |
| TAATTCTCCAGGATAGCTTA+CGG | + | tig0021307:51867-51886 | Msa1390020:intron | 35.0% | |
| AATCAAACAATGACCACGTT+TGG | - | tig0021307:52002-52021 | None:intergenic | 35.0% | |
| CATGGTAGGACTTGAAAAAA+TGG | - | tig0021307:52348-52367 | None:intergenic | 35.0% | |
| ! | ACATCACCCAACTTTTGTAA+GGG | - | tig0021307:52383-52402 | None:intergenic | 35.0% |
| ! | CTTGACTAACTTGTCTTTGA+TGG | + | tig0021307:52546-52565 | Msa1390020:intron | 35.0% |
| CTTCACTTCTATATAGGATC+AGG | + | tig0021307:52578-52597 | Msa1390020:intron | 35.0% | |
| TACAAAAACAACTTGACGAC+GGG | - | tig0021307:52615-52634 | None:intergenic | 35.0% | |
| AAGTGCACAGATTTAGTGAA+AGG | - | tig0021307:52718-52737 | None:intergenic | 35.0% | |
| TAAAGAAGCTAAGGAATCAG+CGG | + | tig0021307:52809-52828 | Msa1390020:CDS | 35.0% | |
| AAAGAGTAATGTAGCTGAAG+TGG | + | tig0021307:52863-52882 | Msa1390020:CDS | 35.0% | |
| TGTACAGGATCGAATGATAT+CGG | + | tig0021307:52953-52972 | Msa1390020:CDS | 35.0% | |
| GAAGAATCTGAGCATCAAAT+TGG | - | tig0021307:53155-53174 | None:intergenic | 35.0% | |
| ! | GTTTCAGGTGGCAAAAATAA+CGG | + | tig0021307:53211-53230 | Msa1390020:intron | 35.0% |
| TCTTGACAGACATTGAAAGA+TGG | + | tig0021307:53252-53271 | Msa1390020:CDS | 35.0% | |
| AGACATTGAAAGATGGCAAA+AGG | + | tig0021307:53259-53278 | Msa1390020:CDS | 35.0% | |
| ! | GGCAAAAGGTATATGACATT+TGG | + | tig0021307:53273-53292 | Msa1390020:intron | 35.0% |
| CAACTCCCTGCAAAAAAAAA+GGG | - | tig0021307:53356-53375 | None:intergenic | 35.0% | |
| TAGTTCCGTTGATCTAACAA+GGG | + | tig0021307:53491-53510 | Msa1390020:intron | 35.0% | |
| AAGATCCCTTGTTAGATCAA+CGG | - | tig0021307:53499-53518 | None:intergenic | 35.0% | |
| ACGATTAACTACTAGAATGC+AGG | - | tig0021307:53608-53627 | None:intergenic | 35.0% | |
| CTCTGTACAGTAATCTCAAT+CGG | - | tig0021307:53662-53681 | None:intergenic | 35.0% | |
| TTGACTAGTATCTGAGGAAT+AGG | - | tig0021307:53701-53720 | None:intergenic | 35.0% | |
| GCAGATTACCTTATAGTTTC+AGG | + | tig0021307:53725-53744 | Msa1390020:CDS | 35.0% | |
| TAAATCTGAAGGGGACAAAA+AGG | + | tig0021307:53882-53901 | Msa1390020:CDS | 35.0% | |
| CAAAAAGGTTATTCAGCAGT+TGG | + | tig0021307:53897-53916 | Msa1390020:CDS | 35.0% | |
| CGAAATACCTTGGTTGTATA+GGG | - | tig0021307:53926-53945 | None:intergenic | 35.0% | |
| TCGAAATACCTTGGTTGTAT+AGG | - | tig0021307:53927-53946 | None:intergenic | 35.0% | |
| CTCATTATAAAGCTCCAATG+TGG | - | tig0021307:54118-54137 | None:intergenic | 35.0% | |
| CCTCTTAAGTATGTTTCTCA+TGG | - | tig0021307:54169-54188 | None:intergenic | 35.0% | |
| CCATGAGAAACATACTTAAG+AGG | + | tig0021307:54166-54185 | Msa1390020:CDS | 35.0% | |
| TCAGAAGTCACTTCTCAATA+AGG | + | tig0021307:54248-54267 | Msa1390020:CDS | 35.0% | |
| GAGTGTGAATAATTGTTTGG+TGG | + | tig0021307:54289-54308 | Msa1390020:intron | 35.0% | |
| ! | GAATAATTGTTTGGTGGAAG+TGG | + | tig0021307:54295-54314 | Msa1390020:intron | 35.0% |
| TAAAGTTGTTGTCATGTGAC+TGG | + | tig0021307:54725-54744 | Msa1390020:intron | 35.0% | |
| AGAATATGAAGGTAAGCTGA+TGG | - | tig0021307:54894-54913 | None:intergenic | 35.0% | |
| TAGAGACTTGAAACGGTAAA+TGG | + | tig0021307:54967-54986 | Msa1390020:intron | 35.0% | |
| CATACATATGATTGGATGTG+TGG | + | tig0021307:55084-55103 | Msa1390020:intron | 35.0% | |
| TGGTATAAGCTAGACTTAGT+TGG | + | tig0021307:55177-55196 | Msa1390020:intron | 35.0% | |
| TAAGCTAGACTTAGTTGGTT+TGG | + | tig0021307:55182-55201 | Msa1390020:intron | 35.0% | |
| ! | AAGCTAGACTTAGTTGGTTT+GGG | + | tig0021307:55183-55202 | Msa1390020:intron | 35.0% |
| GGATCTAGAGATTAATGAGT+TGG | + | tig0021307:55319-55338 | Msa1390020:intron | 35.0% | |
| ! | TAATGAGTTGGAGAAAGACA+TGG | + | tig0021307:55331-55350 | Msa1390020:intron | 35.0% |
| ! | TGTTGTTGTTGTATCTTCTC+TGG | + | tig0021307:55423-55442 | Msa1390020:intron | 35.0% |
| ! | GTTGTTGTTGTATCTTCTCT+GGG | + | tig0021307:55424-55443 | Msa1390020:intron | 35.0% |
| CAAAGCAAGTTAAACAACTC+GGG | - | tig0021307:55653-55672 | None:intergenic | 35.0% | |
| !! | CATTGTTGACTTTGTTCAGA+TGG | + | tig0021307:55825-55844 | Msa1390020:intron | 35.0% |
| ! | ACTTTGTTCAGATGGATTCT+CGG | + | tig0021307:55833-55852 | Msa1390020:intron | 35.0% |
| CCATATGATCAGATCCTATA+TGG | - | tig0021307:56218-56237 | None:intergenic | 35.0% | |
| CCATATAGGATCTGATCATA+TGG | + | tig0021307:56215-56234 | Msa1390020:intron | 35.0% | |
| TATAGGATCTGATCATATGG+AGG | + | tig0021307:56218-56237 | Msa1390020:intron | 35.0% | |
| GATCATATGGAGGATAACTT+TGG | + | tig0021307:56228-56247 | Msa1390020:intron | 35.0% | |
| TTATTTGCCCTTCCAAAAAG+TGG | + | tig0021307:56303-56322 | Msa1390020:intron | 35.0% | |
| !! | TTGCTATTGTTGTTTAGTGC+TGG | + | tig0021307:56397-56416 | Msa1390020:intron | 35.0% |
| !! | TGCTATTGTTGTTTAGTGCT+GGG | + | tig0021307:56398-56417 | Msa1390020:intron | 35.0% |
| GTTAAACTTCAGTAGGTGTA+TGG | - | tig0021307:56534-56553 | None:intergenic | 35.0% | |
| ! | TCTTAGTGCATTTTCATGTC+AGG | - | tig0021307:56586-56605 | None:intergenic | 35.0% |
| GACATGAAAATGCACTAAGA+AGG | + | tig0021307:56586-56605 | Msa1390020:intron | 35.0% | |
| ! | ATTAACTGATGTTAGCCTCT+TGG | + | tig0021307:56707-56726 | Msa1390020:intron | 35.0% |
| ! | TTAACTGATGTTAGCCTCTT+GGG | + | tig0021307:56708-56727 | Msa1390020:intron | 35.0% |
| AATAAGAGAAGATGCATCCA+TGG | - | tig0021307:56972-56991 | None:intergenic | 35.0% | |
| TGCATCTTCTCTTATTCCTT+TGG | + | tig0021307:56976-56995 | Msa1390020:CDS | 35.0% | |
| TCTCTTATTCCTTTGGATGA+AGG | + | tig0021307:56983-57002 | Msa1390020:CDS | 35.0% | |
| ! | TGACTTGGATGTATTGGATT+TGG | + | tig0021307:57135-57154 | Msa1390020:three_prime_UTR | 35.0% |
| TATAGCAGCTATGTTTATGC+TGG | + | tig0021307:57228-57247 | Msa1390020:three_prime_UTR | 35.0% | |
| ATAGCAGCTATGTTTATGCT+GGG | + | tig0021307:57229-57248 | Msa1390020:three_prime_UTR | 35.0% | |
| CTATACCTTGTTCGATTCAG+TGG | - | tig0021307:51462-51481 | None:intergenic | 40.0% | |
| ! | AGAGTGTTTGAGAGAGCTTA+TGG | + | tig0021307:52060-52079 | Msa1390020:intron | 40.0% |
| GAGTGTTTGAGAGAGCTTAT+GGG | + | tig0021307:52061-52080 | Msa1390020:intron | 40.0% | |
| GGTAGGACTTGAAAAAATGG+TGG | - | tig0021307:52345-52364 | None:intergenic | 40.0% | |
| ! | CACATCACCCAACTTTTGTA+AGG | - | tig0021307:52384-52403 | None:intergenic | 40.0% |
| CTTACAAAAGTTGGGTGATG+TGG | + | tig0021307:52382-52401 | Msa1390020:intron | 40.0% | |
| ! | AGTGGTTTCTTTTCTTCCTC+AGG | + | tig0021307:52690-52709 | Msa1390020:CDS | 40.0% |
| !! | GATTTAGTGAAAGGTACCTG+AGG | - | tig0021307:52709-52728 | None:intergenic | 40.0% |
| GGTCAAGCTTAAAGAAGCTA+AGG | + | tig0021307:52800-52819 | Msa1390020:CDS | 40.0% | |
| AAAGAAGCTAAGGAATCAGC+GGG | + | tig0021307:52810-52829 | Msa1390020:CDS | 40.0% | |
| TTGGGACGGTATTCAAAAGT+CGG | + | tig0021307:52895-52914 | Msa1390020:CDS | 40.0% | |
| TGTACAGCATGTCTTGTAGA+CGG | - | tig0021307:52939-52958 | None:intergenic | 40.0% | |
| TTTGTCAGGGACAAAAGAGA+AGG | + | tig0021307:53010-53029 | Msa1390020:CDS | 40.0% | |
| ACAAAAGAGAAGGTGGTTGT+GGG | + | tig0021307:53020-53039 | Msa1390020:CDS | 40.0% | |
| GCAACTCCCTGCAAAAAAAA+AGG | - | tig0021307:53357-53376 | None:intergenic | 40.0% | |
| GTAGTTCCGTTGATCTAACA+AGG | + | tig0021307:53490-53509 | Msa1390020:intron | 40.0% | |
| TGCATAGCAGTGTGTCAAAA+TGG | - | tig0021307:53532-53551 | None:intergenic | 40.0% | |
| CAATCGGAACTCCAAATACT+GGG | - | tig0021307:53646-53665 | None:intergenic | 40.0% | |
| TCAATCGGAACTCCAAATAC+TGG | - | tig0021307:53647-53666 | None:intergenic | 40.0% | |
| CGATTGAGATTACTGTACAG+AGG | + | tig0021307:53660-53679 | Msa1390020:CDS | 40.0% | |
| GCACAATTGACTAGTATCTG+AGG | - | tig0021307:53707-53726 | None:intergenic | 40.0% | |
| TCTAATTTGAGGGGTAACCT+TGG | + | tig0021307:54693-54712 | Msa1390020:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | + | tig0021307:54806-54825 | Msa1390020:intron | 40.0% | |
| ATACCTTATCCCACTATGTG+GGG | - | tig0021307:55400-55419 | None:intergenic | 40.0% | |
| CATACCTTATCCCACTATGT+GGG | - | tig0021307:55401-55420 | None:intergenic | 40.0% | |
| TCATATTCAGGGAGTGAAGA+AGG | - | tig0021307:55689-55708 | None:intergenic | 40.0% | |
| CTCCCTGAATATGATCATCA+CGG | + | tig0021307:55695-55714 | Msa1390020:intron | 40.0% | |
| CACCGTGATGATCATATTCA+GGG | - | tig0021307:55700-55719 | None:intergenic | 40.0% | |
| TCACCGTGATGATCATATTC+AGG | - | tig0021307:55701-55720 | None:intergenic | 40.0% | |
| CTTAAGGTCAGCCATTTGAT+CGG | - | tig0021307:55741-55760 | None:intergenic | 40.0% | |
| AAATGGCACCTGTTATCATG+TGG | + | tig0021307:55869-55888 | Msa1390020:CDS | 40.0% | |
| ACCTGTTATCATGTGGCAAA+AGG | + | tig0021307:55876-55895 | Msa1390020:CDS | 40.0% | |
| CCTGTTATCATGTGGCAAAA+GGG | + | tig0021307:55877-55896 | Msa1390020:CDS | 40.0% | |
| TTCTGGATTCAAGCTCTGTT+TGG | - | tig0021307:55956-55975 | None:intergenic | 40.0% | |
| AGAACCTGGTTCAACTACTT+GGG | + | tig0021307:55972-55991 | Msa1390020:CDS | 40.0% | |
| TTTGAGGAGAAGGCCAATAT+AGG | + | tig0021307:56191-56210 | Msa1390020:intron | 40.0% | |
| GATCCTATATGGGCCTATAT+TGG | - | tig0021307:56207-56226 | None:intergenic | 40.0% | |
| AGGATAACTTTGGGTGTAGA+AGG | + | tig0021307:56238-56257 | Msa1390020:intron | 40.0% | |
| AAGCGCCAAAGTTGTCTAAA+AGG | + | tig0021307:56497-56516 | Msa1390020:intron | 40.0% | |
| TTTGGAAAGAAGATCCCAAG+AGG | - | tig0021307:56725-56744 | None:intergenic | 40.0% | |
| TCTTGGGATCTTCTTTCCAA+AGG | + | tig0021307:56724-56743 | Msa1390020:intron | 40.0% | |
| CTTGGGATCTTCTTTCCAAA+GGG | + | tig0021307:56725-56744 | Msa1390020:intron | 40.0% | |
| AAATGTTTAGCCACACCCTT+TGG | - | tig0021307:56743-56762 | None:intergenic | 40.0% | |
| AAACTTGGTCTGCACTGAAA+TGG | + | tig0021307:56884-56903 | Msa1390020:intron | 40.0% | |
| TAGCAGCTATGTTTATGCTG+GGG | + | tig0021307:57230-57249 | Msa1390020:three_prime_UTR | 40.0% | |
| TTTATGCTGGGGAAACATGT+TGG | + | tig0021307:57241-57260 | Msa1390020:three_prime_UTR | 40.0% | |
| TTATGCTGGGGAAACATGTT+GGG | + | tig0021307:57242-57261 | Msa1390020:three_prime_UTR | 40.0% | |
| !! | ACTGGTCCAGTTTTAGTGAA+AGG | + | tig0021307:57266-57285 | Msa1390020:three_prime_UTR | 40.0% |
| !!! | TTATTTTTTGGGTTGCAGGG+AGG | + | tig0021307:57319-57338 | Msa1390020:three_prime_UTR | 40.0% |
| TTAGTGATGAGAGTTTCTGC+AGG | - | tig0021307:57379-57398 | None:intergenic | 40.0% | |
| CTCTTCCACTGAATCGAACA+AGG | + | tig0021307:51454-51473 | Msa1390020:five_prime_UTR | 45.0% | |
| CAATAAGCCGTAAGCTATCC+TGG | - | tig0021307:51877-51896 | None:intergenic | 45.0% | |
| GGTCTCTTATTGGATGTCAG+TGG | - | tig0021307:52324-52343 | None:intergenic | 45.0% | |
| TGGGTGATGTGGCAAATTAG+TGG | + | tig0021307:52393-52412 | Msa1390020:intron | 45.0% | |
| CACTGAGGTGAGATAACAGA+AGG | - | tig0021307:52657-52676 | None:intergenic | 45.0% | |
| CTTCTGTTATCTCACCTCAG+TGG | + | tig0021307:52655-52674 | Msa1390020:CDS | 45.0% | |
| GAGTAATGTAGCTGAAGTGG+CGG | + | tig0021307:52866-52885 | Msa1390020:CDS | 45.0% | |
| AGTAATGTAGCTGAAGTGGC+GGG | + | tig0021307:52867-52886 | Msa1390020:CDS | 45.0% | |
| GACGGTATTCAAAAGTCGGT+GGG | + | tig0021307:52899-52918 | Msa1390020:CDS | 45.0% | |
| GTCTACAAGACATGCTGTAC+AGG | + | tig0021307:52938-52957 | Msa1390020:CDS | 45.0% | |
| GACAAAAGAGAAGGTGGTTG+TGG | + | tig0021307:53019-53038 | Msa1390020:CDS | 45.0% | |
| CAAAAGAGAAGGTGGTTGTG+GGG | + | tig0021307:53021-53040 | Msa1390020:CDS | 45.0% | |
| CCACATTACCTCTTCAACCT+TGG | - | tig0021307:53051-53070 | None:intergenic | 45.0% | |
| CCAAGGTTGAAGAGGTAATG+TGG | + | tig0021307:53048-53067 | Msa1390020:intron | 45.0% | |
| CAGGGAGTTGCTAAAACTGA+CGG | + | tig0021307:53366-53385 | Msa1390020:intron | 45.0% | |
| CATCTTGACCACCCAGTATT+TGG | + | tig0021307:53632-53651 | Msa1390020:intron | 45.0% | |
| TTGGTTGCCCTATACAACCA+AGG | + | tig0021307:53916-53935 | Msa1390020:CDS | 45.0% | |
| TCAACTGGATTTGAGCCTTC+TGG | - | tig0021307:54045-54064 | None:intergenic | 45.0% | |
| ACAAGAGCTGCTACATCAAC+TGG | - | tig0021307:54060-54079 | None:intergenic | 45.0% | |
| TAAAGCTCCAATGTGGTCAG+TGG | - | tig0021307:54111-54130 | None:intergenic | 45.0% | |
| CAGAGTCATATAGTTCACGC+TGG | - | tig0021307:54196-54215 | None:intergenic | 45.0% | |
| CAGCGTGAACTATATGACTC+TGG | + | tig0021307:54194-54213 | Msa1390020:CDS | 45.0% | |
| GAAGTGACTTCTGACTAGCA+CGG | - | tig0021307:54242-54261 | None:intergenic | 45.0% | |
| ! | TTGTTTGGTGGAAGTGGGAT+TGG | + | tig0021307:54301-54320 | Msa1390020:intron | 45.0% |
| ! | TGTTTGGTGGAAGTGGGATT+GGG | + | tig0021307:54302-54321 | Msa1390020:intron | 45.0% |
| GTGGGATTGGGTTTCGTATA+TGG | + | tig0021307:54314-54333 | Msa1390020:intron | 45.0% | |
| GTTGTTGTCATGTGACTGGA+AGG | + | tig0021307:54729-54748 | Msa1390020:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | + | tig0021307:54802-54821 | Msa1390020:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | + | tig0021307:54805-54824 | Msa1390020:intron | 45.0% | |
| GGATGTGTGGTAAGACTAGA+CGG | + | tig0021307:55097-55116 | Msa1390020:intron | 45.0% | |
| GATGTGTGGTAAGACTAGAC+GGG | + | tig0021307:55098-55117 | Msa1390020:intron | 45.0% | |
| AAGGAGAGTAGATCAGATCG+AGG | + | tig0021307:55238-55257 | Msa1390020:intron | 45.0% | |
| AGGAGAGTAGATCAGATCGA+GGG | + | tig0021307:55239-55258 | Msa1390020:intron | 45.0% | |
| GAGTCATGTCACTAGTGGTA+GGG | + | tig0021307:55262-55281 | Msa1390020:intron | 45.0% | |
| AGTCATGTCACTAGTGGTAG+GGG | + | tig0021307:55263-55282 | Msa1390020:intron | 45.0% | |
| GGTCGGCTACATGAATCAAA+CGG | - | tig0021307:55379-55398 | None:intergenic | 45.0% | |
| CCATACCTTATCCCACTATG+TGG | - | tig0021307:55402-55421 | None:intergenic | 45.0% | |
| ! | CCACATAGTGGGATAAGGTA+TGG | + | tig0021307:55399-55418 | Msa1390020:intron | 45.0% |
| !! | TGTTGTATCTTCTCTGGGAC+AGG | + | tig0021307:55429-55448 | Msa1390020:intron | 45.0% |
| ! | CCCTTTTGCCACATGATAAC+AGG | - | tig0021307:55880-55899 | None:intergenic | 45.0% |
| GGATTCAAGCTCTGTTTGGA+AGG | - | tig0021307:55952-55971 | None:intergenic | 45.0% | |
| CAAGTAGTTGAACCAGGTTC+TGG | - | tig0021307:55973-55992 | None:intergenic | 45.0% | |
| CAGAACCTGGTTCAACTACT+TGG | + | tig0021307:55971-55990 | Msa1390020:CDS | 45.0% | |
| ATGTCCCAAGTAGTTGAACC+AGG | - | tig0021307:55979-55998 | None:intergenic | 45.0% | |
| AGGCCAATATAGGCCCATAT+AGG | + | tig0021307:56201-56220 | Msa1390020:intron | 45.0% | |
| AGAAGGTGACACTGTTCTTG+AGG | + | tig0021307:56603-56622 | Msa1390020:intron | 45.0% | |
| GATCTTCTTTCCAAAGGGTG+TGG | + | tig0021307:56730-56749 | Msa1390020:intron | 45.0% | |
| !! | TGCACTGAAATGGTGCTGAT+TGG | + | tig0021307:56894-56913 | Msa1390020:intron | 45.0% |
| TCATTTCCAGACTGTCTCGT+TGG | - | tig0021307:57083-57102 | None:intergenic | 45.0% | |
| AATGATCGTCACGTCCAGAT+TGG | - | tig0021307:57207-57226 | None:intergenic | 45.0% | |
| !!! | AAAATTAATAATTTACTTTT+TGG | - | tig0021307:51647-51666 | None:intergenic | 5.0% |
| !! | TTTATATATAAATTTAATGT+AGG | + | tig0021307:52777-52796 | Msa1390020:intron | 5.0% |
| !! | TTATATATAAATTTAATGTA+GGG | + | tig0021307:52778-52797 | Msa1390020:intron | 5.0% |
| !!! | TTTTTACTTTAATTAAAAAT+TGG | + | tig0021307:53576-53595 | Msa1390020:intron | 5.0% |
| !!! | ATTAAGTAATTAATTTTTTT+TGG | + | tig0021307:54435-54454 | Msa1390020:intron | 5.0% |
| !!! | TCTTTTAATATTTTATTTTT+TGG | + | tig0021307:57307-57326 | Msa1390020:three_prime_UTR | 5.0% |
| !!! | CTTTTAATATTTTATTTTTT+GGG | + | tig0021307:57308-57327 | Msa1390020:three_prime_UTR | 5.0% |
| AGTCTCGCACGTACTTGTGT+CGG | - | tig0021307:51790-51809 | None:intergenic | 50.0% | |
| CTCACCTCAGTGGCAAGATA+AGG | + | tig0021307:52665-52684 | Msa1390020:CDS | 50.0% | |
| GAATCAGCGGGAACGTTTGT+TGG | + | tig0021307:52822-52841 | Msa1390020:CDS | 50.0% | |
| ! | GTTTGTTGGCGAGGTCACAA+AGG | + | tig0021307:52836-52855 | Msa1390020:CDS | 50.0% |
| ! | CTGAAGTGGCGGGAAAAGTT+GGG | + | tig0021307:52877-52896 | Msa1390020:CDS | 50.0% |
| GGACGGTATTCAAAAGTCGG+TGG | + | tig0021307:52898-52917 | Msa1390020:CDS | 50.0% | |
| TTCCTGAGGAGAGGTTTGTC+AGG | + | tig0021307:52996-53015 | Msa1390020:CDS | 50.0% | |
| TCCTGAGGAGAGGTTTGTCA+GGG | + | tig0021307:52997-53016 | Msa1390020:CDS | 50.0% | |
| GTCAGGGACAAAAGAGAAGG+TGG | + | tig0021307:53013-53032 | Msa1390020:CDS | 50.0% | |
| GGGGAAATCCAAGGTTGAAG+AGG | + | tig0021307:53040-53059 | Msa1390020:CDS | 50.0% | |
| TCGGAACTCCAAATACTGGG+TGG | - | tig0021307:53643-53662 | None:intergenic | 50.0% | |
| ACTAGCACGGAGCAAAAGTG+CGG | - | tig0021307:54229-54248 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | tig0021307:54713-54732 | None:intergenic | 50.0% | |
| GTCATGTGACTGGAAGGTCA+CGG | + | tig0021307:54735-54754 | Msa1390020:intron | 50.0% | |
| TCATGTGACTGGAAGGTCAC+GGG | + | tig0021307:54736-54755 | Msa1390020:intron | 50.0% | |
| AAGGTCACGGGTTCAAGTCT+TGG | + | tig0021307:54748-54767 | Msa1390020:intron | 50.0% | |
| CTAAAGCTCCAGCATACGCA+GGG | - | tig0021307:54845-54864 | None:intergenic | 50.0% | |
| ACTAAAGCTCCAGCATACGC+AGG | - | tig0021307:54846-54865 | None:intergenic | 50.0% | |
| ! | ATGCTGGAGCTTTAGTGCAC+CGG | + | tig0021307:54850-54869 | Msa1390020:intron | 50.0% |
| AGCTGATGGCCAGACACAAA+GGG | - | tig0021307:54880-54899 | None:intergenic | 50.0% | |
| AAGCTGATGGCCAGACACAA+AGG | - | tig0021307:54881-54900 | None:intergenic | 50.0% | |
| GGAGAGTAGATCAGATCGAG+GGG | + | tig0021307:55240-55259 | Msa1390020:intron | 50.0% | |
| GGAGTCATGTCACTAGTGGT+AGG | + | tig0021307:55261-55280 | Msa1390020:intron | 50.0% | |
| CTTATCCCACTATGTGGGGT+CGG | - | tig0021307:55396-55415 | None:intergenic | 50.0% | |
| CGGGAAACAGAGCTAAAACG+AGG | - | tig0021307:55634-55653 | None:intergenic | 50.0% | |
| TCGGAGCCTTGCAATGGAAA+TGG | + | tig0021307:55852-55871 | Msa1390020:CDS | 50.0% | |
| !! | CAGGTGCCATTTCCATTGCA+AGG | - | tig0021307:55861-55880 | None:intergenic | 50.0% |
| CAGAGCTTGAATCCAGAACC+TGG | + | tig0021307:55958-55977 | Msa1390020:CDS | 50.0% | |
| AGGTGACACTGTTCTTGAGG+AGG | + | tig0021307:56606-56625 | Msa1390020:intron | 50.0% | |
| ACTGGCATGCCTTCATCCAA+AGG | - | tig0021307:56995-57014 | None:intergenic | 50.0% | |
| ! | GAAGGCATGCCAGTTGACTT+CGG | + | tig0021307:57001-57020 | Msa1390020:CDS | 50.0% |
| TCGATTGCACCGAAGTCAAC+TGG | - | tig0021307:57013-57032 | None:intergenic | 50.0% | |
| TGGGGAAACATGTTGGGTAC+TGG | + | tig0021307:57248-57267 | Msa1390020:three_prime_UTR | 50.0% | |
| CTCGCCTTATCTTGCCACTG+AGG | - | tig0021307:52672-52691 | None:intergenic | 55.0% | |
| CAGTGGCAAGATAAGGCGAG+TGG | + | tig0021307:52672-52691 | Msa1390020:CDS | 55.0% | |
| ! | GCTGAAGTGGCGGGAAAAGT+TGG | + | tig0021307:52876-52895 | Msa1390020:CDS | 55.0% |
| ! | AGTGGCGGGAAAAGTTGGGA+CGG | + | tig0021307:52881-52900 | Msa1390020:CDS | 55.0% |
| ! | ATATCGGCTGCTGCTACGAC+TGG | + | tig0021307:52969-52988 | Msa1390020:CDS | 55.0% |
| CTACGACTGGTGCATTCCTG+AGG | + | tig0021307:52982-53001 | Msa1390020:CDS | 55.0% | |
| ACTGGTGCATTCCTGAGGAG+AGG | + | tig0021307:52987-53006 | Msa1390020:CDS | 55.0% | |
| TCCCTGACAAACCTCTCCTC+AGG | - | tig0021307:53001-53020 | None:intergenic | 55.0% | |
| GGTGGTTGTGGGGAAATCCA+AGG | + | tig0021307:53031-53050 | Msa1390020:CDS | 55.0% | |
| TCAACTGCTGCAGTGCCAGA+AGG | + | tig0021307:54027-54046 | Msa1390020:CDS | 55.0% | |
| ATGTGGTCAGTGGCTCAGGA+AGG | - | tig0021307:54101-54120 | None:intergenic | 55.0% | |
| TCCTGAGCCACTGACCACAT+TGG | + | tig0021307:54101-54120 | Msa1390020:CDS | 55.0% | |
| TCCAATGTGGTCAGTGGCTC+AGG | - | tig0021307:54105-54124 | None:intergenic | 55.0% | |
| ! | TGCTGGAGCTTTAGTGCACC+GGG | + | tig0021307:54851-54870 | Msa1390020:intron | 55.0% |
| GAGGGGAGTCATGTCACTAG+TGG | + | tig0021307:55257-55276 | Msa1390020:intron | 55.0% | |
| ATGTAGCCGACCCCACATAG+TGG | + | tig0021307:55387-55406 | Msa1390020:intron | 55.0% | |
| TGTAGCCGACCCCACATAGT+GGG | + | tig0021307:55388-55407 | Msa1390020:intron | 55.0% | |
| ! | CGACCCCACATAGTGGGATA+AGG | + | tig0021307:55394-55413 | Msa1390020:intron | 55.0% |
| GGATTCTCGGAGCCTTGCAA+TGG | + | tig0021307:55846-55865 | Msa1390020:CDS | 55.0% | |
| ACTACTTGGGACATGCTCGC+TGG | + | tig0021307:55985-56004 | Msa1390020:CDS | 55.0% | |
| TGCAGACGAGAGTGAAGCCA+TGG | + | tig0021307:56952-56971 | Msa1390020:intron | 55.0% | |
| CAGATGCCAACGAGACAGTC+TGG | + | tig0021307:57074-57093 | Msa1390020:CDS | 55.0% | |
| ! | AGCGGGAACGTTTGTTGGCG+AGG | + | tig0021307:52827-52846 | Msa1390020:CDS | 60.0% |
| AAGTCGGTGGGCACGTCTTC+AGG | + | tig0021307:52911-52930 | Msa1390020:CDS | 60.0% | |
| AGGGGTAACCTTGGCGCAAC+TGG | + | tig0021307:54702-54721 | Msa1390020:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | + | tig0021307:54818-54837 | Msa1390020:intron | 60.0% |
| ACCGGGTTGCCCTTTGTGTC+TGG | + | tig0021307:54868-54887 | Msa1390020:intron | 60.0% | |
| GCCAGACACAAAGGGCAACC+CGG | - | tig0021307:54872-54891 | None:intergenic | 60.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | - | tig0021307:54820-54839 | None:intergenic | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | - | tig0021307:54833-54852 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | - | tig0021307:54834-54853 | None:intergenic | 65.0% | |
| AGCATACGCAGGGTCCGGGA+AGG | - | tig0021307:54835-54854 | None:intergenic | 65.0% | |
| TTCCCGGACCCTGCGTATGC+TGG | + | tig0021307:54834-54853 | Msa1390020:intron | 65.0% | |
| CTCCAGCATACGCAGGGTCC+GGG | - | tig0021307:54839-54858 | None:intergenic | 65.0% | |
| GCTCCAGCATACGCAGGGTC+CGG | - | tig0021307:54840-54859 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021307 | gene | 51315 | 57498 | 51315 | ID=Msa1390020;Name=Msa1390020 |
| tig0021307 | mRNA | 51315 | 57498 | 51315 | ID=Msa1390020-mRNA-1;Parent=Msa1390020;Name=Msa1390020-mRNA-1;_AED=0.13;_eAED=0.13;_QI=218|1|1|1|0.88|0.8|10|396|378 |
| tig0021307 | exon | 51315 | 51475 | 51315 | ID=Msa1390020-mRNA-1:exon:11953;Parent=Msa1390020-mRNA-1 |
| tig0021307 | exon | 52594 | 52711 | 52594 | ID=Msa1390020-mRNA-1:exon:11954;Parent=Msa1390020-mRNA-1 |
| tig0021307 | exon | 52799 | 53061 | 52799 | ID=Msa1390020-mRNA-1:exon:11955;Parent=Msa1390020-mRNA-1 |
| tig0021307 | exon | 53218 | 53280 | 53218 | ID=Msa1390020-mRNA-1:exon:11956;Parent=Msa1390020-mRNA-1 |
| tig0021307 | exon | 53369 | 53387 | 53369 | ID=Msa1390020-mRNA-1:exon:11957;Parent=Msa1390020-mRNA-1 |
| tig0021307 | exon | 53648 | 53746 | 53648 | ID=Msa1390020-mRNA-1:exon:11958;Parent=Msa1390020-mRNA-1 |
| tig0021307 | exon | 53860 | 53937 | 53860 | ID=Msa1390020-mRNA-1:exon:11959;Parent=Msa1390020-mRNA-1 |
| tig0021307 | exon | 54025 | 54269 | 54025 | ID=Msa1390020-mRNA-1:exon:11960;Parent=Msa1390020-mRNA-1 |
| tig0021307 | exon | 55844 | 56006 | 55844 | ID=Msa1390020-mRNA-1:exon:11961;Parent=Msa1390020-mRNA-1 |
| tig0021307 | exon | 56957 | 57498 | 56957 | ID=Msa1390020-mRNA-1:exon:11962;Parent=Msa1390020-mRNA-1 |
| tig0021307 | five_prime_UTR | 51315 | 51475 | 51315 | ID=Msa1390020-mRNA-1:five_prime_utr;Parent=Msa1390020-mRNA-1 |
| tig0021307 | five_prime_UTR | 52594 | 52650 | 52594 | ID=Msa1390020-mRNA-1:five_prime_utr;Parent=Msa1390020-mRNA-1 |
| tig0021307 | CDS | 52651 | 52711 | 52651 | ID=Msa1390020-mRNA-1:cds;Parent=Msa1390020-mRNA-1 |
| tig0021307 | CDS | 52799 | 53061 | 52799 | ID=Msa1390020-mRNA-1:cds;Parent=Msa1390020-mRNA-1 |
| tig0021307 | CDS | 53218 | 53280 | 53218 | ID=Msa1390020-mRNA-1:cds;Parent=Msa1390020-mRNA-1 |
| tig0021307 | CDS | 53369 | 53387 | 53369 | ID=Msa1390020-mRNA-1:cds;Parent=Msa1390020-mRNA-1 |
| tig0021307 | CDS | 53648 | 53746 | 53648 | ID=Msa1390020-mRNA-1:cds;Parent=Msa1390020-mRNA-1 |
| tig0021307 | CDS | 53860 | 53937 | 53860 | ID=Msa1390020-mRNA-1:cds;Parent=Msa1390020-mRNA-1 |
| tig0021307 | CDS | 54025 | 54269 | 54025 | ID=Msa1390020-mRNA-1:cds;Parent=Msa1390020-mRNA-1 |
| tig0021307 | CDS | 55844 | 56006 | 55844 | ID=Msa1390020-mRNA-1:cds;Parent=Msa1390020-mRNA-1 |
| tig0021307 | CDS | 56957 | 57102 | 56957 | ID=Msa1390020-mRNA-1:cds;Parent=Msa1390020-mRNA-1 |
| tig0021307 | three_prime_UTR | 57103 | 57498 | 57103 | ID=Msa1390020-mRNA-1:three_prime_utr;Parent=Msa1390020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
