Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343500 | XP_013468062.1 | 98.827 | 341 | 4 | 0 | 1 | 341 | 1 | 341 | 0.0 | 699 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343500 | sp|Q9LUG5|RPF2_ARATH | 70.927 | 313 | 89 | 2 | 28 | 340 | 3 | 313 | 1.87e-157 | 446 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343500 | I3SPQ7 | 98.827 | 341 | 4 | 0 | 1 | 341 | 1 | 341 | 0.0 | 699 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0067590 | Msa0343500 | -0.802850 | 4.613694e-49 | -8.615850e-47 |
| Msa0072420 | Msa0343500 | 0.906712 | 1.106709e-80 | -8.615850e-47 |
| Msa0093950 | Msa0343500 | -0.811847 | 5.703887e-51 | -8.615850e-47 |
| Msa0101500 | Msa0343500 | -0.801545 | 8.561214e-49 | -8.615850e-47 |
| Msa0120880 | Msa0343500 | 0.881908 | 1.622984e-70 | -8.615850e-47 |
| Msa0122530 | Msa0343500 | 0.800486 | 1.409350e-48 | -8.615850e-47 |
| Msa0140770 | Msa0343500 | -0.857252 | 1.852646e-62 | -8.615850e-47 |
| Msa0204960 | Msa0343500 | 0.849691 | 2.747903e-60 | -8.615850e-47 |
| Msa0215990 | Msa0343500 | 0.826213 | 3.069663e-54 | -8.615850e-47 |
| Msa0220400 | Msa0343500 | -0.827733 | 1.329255e-54 | -8.615850e-47 |
| Msa0232790 | Msa0343500 | 0.806414 | 8.322605e-50 | -8.615850e-47 |
| Msa0256140 | Msa0343500 | 0.853230 | 2.740644e-61 | -8.615850e-47 |
| Msa0257490 | Msa0343500 | 0.809438 | 1.892291e-50 | -8.615850e-47 |
| Msa0258390 | Msa0343500 | 0.822213 | 2.672205e-53 | -8.615850e-47 |
| Msa0272300 | Msa0343500 | 0.826089 | 3.284337e-54 | -8.615850e-47 |
| Msa0281530 | Msa0343500 | 0.847889 | 8.689318e-60 | -8.615850e-47 |
| Msa0296630 | Msa0343500 | -0.806816 | 6.846191e-50 | -8.615850e-47 |
| Msa0297610 | Msa0343500 | 0.801979 | 6.971865e-49 | -8.615850e-47 |
| Msa0320590 | Msa0343500 | 0.821108 | 4.810888e-53 | -8.615850e-47 |
| Msa0337710 | Msa0343500 | 0.806203 | 9.217791e-50 | -8.615850e-47 |
| Msa0343500 | Msa0377820 | 0.830501 | 2.834309e-55 | -8.615850e-47 |
| Msa0343500 | Msa0385500 | 0.843161 | 1.661006e-58 | -8.615850e-47 |
| Msa0343500 | Msa0386770 | 0.813161 | 2.944649e-51 | -8.615850e-47 |
| Msa0343500 | Msa0403480 | -0.837227 | 5.887986e-57 | -8.615850e-47 |
| Msa0343500 | Msa0426580 | 0.824090 | 9.741996e-54 | -8.615850e-47 |
| Msa0343500 | Msa0437020 | 0.822874 | 1.875674e-53 | -8.615850e-47 |
| Msa0343500 | Msa0462600 | 0.821665 | 3.578896e-53 | -8.615850e-47 |
| Msa0343500 | Msa0472930 | 0.821361 | 4.205872e-53 | -8.615850e-47 |
| Msa0343500 | Msa0479760 | -0.857207 | 1.910661e-62 | -8.615850e-47 |
| Msa0343500 | Msa0517590 | 0.828488 | 8.741627e-55 | -8.615850e-47 |
| Msa0343500 | Msa0523430 | -0.833995 | 3.871208e-56 | -8.615850e-47 |
| Msa0343500 | Msa0527540 | 0.807848 | 4.135467e-50 | -8.615850e-47 |
| Msa0343500 | Msa0531230 | 0.827821 | 1.265956e-54 | -8.615850e-47 |
| Msa0343500 | Msa0539410 | 0.811381 | 7.202389e-51 | -8.615850e-47 |
| Msa0343500 | Msa0549450 | 0.849438 | 3.233140e-60 | -8.615850e-47 |
| Msa0343500 | Msa0549950 | 0.805107 | 1.566163e-49 | -8.615850e-47 |
| Msa0343500 | Msa0595170 | 0.824302 | 8.687768e-54 | -8.615850e-47 |
| Msa0343500 | Msa0610550 | 0.805239 | 1.469510e-49 | -8.615850e-47 |
| Msa0343500 | Msa0628410 | 0.817094 | 3.940625e-52 | -8.615850e-47 |
| Msa0343500 | Msa0634890 | 0.812676 | 3.760910e-51 | -8.615850e-47 |
| Msa0343500 | Msa0646420 | 0.803833 | 2.885846e-49 | -8.615850e-47 |
| Msa0343500 | Msa0662220 | 0.805801 | 1.120232e-49 | -8.615850e-47 |
| Msa0343500 | Msa0665100 | 0.807590 | 4.693098e-50 | -8.615850e-47 |
| Msa0343500 | Msa0712860 | 0.812199 | 4.781741e-51 | -8.615850e-47 |
| Msa0343500 | Msa0741440 | 0.816399 | 5.642592e-52 | -8.615850e-47 |
| Msa0343500 | Msa0765080 | 0.821170 | 4.655909e-53 | -8.615850e-47 |
| Msa0343500 | Msa0800480 | 0.818014 | 2.445416e-52 | -8.615850e-47 |
| Msa0343500 | Msa0803780 | 0.830113 | 3.525593e-55 | -8.615850e-47 |
| Msa0343500 | Msa0828590 | 0.841405 | 4.846589e-58 | -8.615850e-47 |
| Msa0343500 | Msa0833950 | -0.807005 | 6.244544e-50 | -8.615850e-47 |
| Msa0343500 | Msa0881530 | -0.814434 | 1.543656e-51 | -8.615850e-47 |
| Msa0343500 | Msa0958000 | 0.839117 | 1.919513e-57 | -8.615850e-47 |
| Msa0343500 | Msa0982090 | -0.803676 | 3.111709e-49 | -8.615850e-47 |
| Msa0343500 | Msa1021520 | 0.892240 | 1.905530e-74 | -8.615850e-47 |
| Msa0343500 | Msa1031660 | 0.832728 | 8.011345e-56 | -8.615850e-47 |
| Msa0343500 | Msa1060230 | 0.811807 | 5.820289e-51 | -8.615850e-47 |
| Msa0343500 | Msa1060260 | 0.832754 | 7.891195e-56 | -8.615850e-47 |
| Msa0343500 | Msa1070720 | 0.833861 | 4.180742e-56 | -8.615850e-47 |
| Msa0343500 | Msa1118860 | 0.843719 | 1.178635e-58 | -8.615850e-47 |
| Msa0343500 | Msa1123770 | 0.834342 | 3.167548e-56 | -8.615850e-47 |
| Msa0343500 | Msa1128280 | 0.820808 | 5.639232e-53 | -8.615850e-47 |
| Msa0343500 | Msa1165270 | 0.814603 | 1.416483e-51 | -8.615850e-47 |
| Msa0343500 | Msa1169910 | 0.834912 | 2.278271e-56 | -8.615850e-47 |
| Msa0343500 | Msa1175350 | 0.804153 | 2.476305e-49 | -8.615850e-47 |
| Msa0343500 | Msa1190100 | -0.802979 | 4.337562e-49 | -8.615850e-47 |
| Msa0343500 | Msa1210900 | 0.808232 | 3.427052e-50 | -8.615850e-47 |
| Msa0343500 | Msa1228040 | 0.848189 | 7.182581e-60 | -8.615850e-47 |
| Msa0343500 | Msa1258030 | -0.830732 | 2.488974e-55 | -8.615850e-47 |
| Msa0343500 | Msa1259290 | 0.808195 | 3.489041e-50 | -8.615850e-47 |
| Msa0343500 | Msa1277260 | 0.850510 | 1.620783e-60 | -8.615850e-47 |
| Msa0343500 | Msa1315890 | 0.859838 | 3.136019e-63 | -8.615850e-47 |
| Msa0343500 | Msa1329730 | 0.814568 | 1.442171e-51 | -8.615850e-47 |
| Msa0343500 | Msa1329750 | 0.872658 | 2.686204e-67 | -8.615850e-47 |
| Msa0343500 | Msa1330540 | -0.808953 | 2.403854e-50 | -8.615850e-47 |
| Msa0343500 | Msa1341060 | 0.843912 | 1.046612e-58 | -8.615850e-47 |
| Msa0343500 | Msa1364350 | -0.835176 | 1.954011e-56 | -8.615850e-47 |
| Msa0343500 | Msa1365140 | 0.804831 | 1.788644e-49 | -8.615850e-47 |
| Msa0343500 | Msa1382380 | -0.803939 | 2.743669e-49 | -8.615850e-47 |
| Msa0343500 | Msa1384760 | -0.849077 | 4.076052e-60 | -8.615850e-47 |
| Msa0343500 | Msa1385720 | 0.834658 | 2.638248e-56 | -8.615850e-47 |
| Msa0343500 | Msa1392980 | 0.828554 | 8.428992e-55 | -8.615850e-47 |
| Msa0343500 | Msa1411970 | 0.820788 | 5.699722e-53 | -8.615850e-47 |
| Msa0343500 | Msa1434090 | 0.837650 | 4.587173e-57 | -8.615850e-47 |
| Msa0343500 | Msa1435390 | 0.892334 | 1.746855e-74 | -8.615850e-47 |
| Msa0343500 | Msa1440930 | 0.870011 | 2.012875e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343500 | MtrunA17_Chr1g0179301 | 98.827 | 341 | 4 | 0 | 1 | 341 | 1 | 341 | 0.0 | 699 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0343500 | AT3G23620.1 | 70.927 | 313 | 89 | 2 | 28 | 340 | 3 | 313 | 1.90e-158 | 446 |
Find 98 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTGATTGCAGTCTCTTTC+TGG | 0.136562 | 3_1:+1693896 | Msa0343500:CDS |
| TGAGGGCGAGTTTGCCCTTA+TGG | 0.218905 | 3_1:-1693596 | None:intergenic |
| GTAATGATGGTTACGAGTTT+TGG | 0.263003 | 3_1:-1693630 | None:intergenic |
| ACATTATGCTTACAATTAAA+TGG | 0.265469 | 3_1:-1697378 | None:intergenic |
| ATTAATGAACGTATTAAAAT+AGG | 0.271829 | 3_1:-1697472 | None:intergenic |
| ATGTTCTGATATACTTTATA+AGG | 0.271920 | 3_1:-1697556 | None:intergenic |
| ACTTCTACCAATTCCATTCT+TGG | 0.274683 | 3_1:-1696724 | None:intergenic |
| GTTTCTGCTGCTTGGCTTCT+CGG | 0.282208 | 3_1:-1697152 | None:intergenic |
| ATTCAAAACCGCACTTGTTT+TGG | 0.289863 | 3_1:-1693751 | None:intergenic |
| CATTTCCAATCTTTCCTTGT+AGG | 0.311357 | 3_1:-1696960 | None:intergenic |
| AGTTGGTCCTTCCATGGATA+TGG | 0.326164 | 3_1:+1696744 | Msa0343500:CDS |
| TCCCCAATGAAAGCCATAAA+AGG | 0.334452 | 3_1:-1696429 | None:intergenic |
| AGCTGGTGGTGAAACCTCTT+TGG | 0.334516 | 3_1:+1693857 | Msa0343500:CDS |
| CAAAGAGAAGACCTTCGTTT+TGG | 0.335324 | 3_1:-1693458 | None:intergenic |
| GAGGGCGAGTTTGCCCTTAT+GGG | 0.337355 | 3_1:-1693595 | None:intergenic |
| AAGGGACAAGCCAAAGAAAA+AGG | 0.337552 | 3_1:+1696825 | Msa0343500:CDS |
| AAAGGCTTTGATCCTTCCTT+TGG | 0.354826 | 3_1:-1696411 | None:intergenic |
| AAGAAAACGTTGTTGCTTCA+TGG | 0.355781 | 3_1:+1693726 | Msa0343500:CDS |
| GTGGAGAATTTAAATCTTGC+CGG | 0.361028 | 3_1:+1696607 | Msa0343500:CDS |
| ACTCCCATGTTTCTGCTGCT+TGG | 0.361871 | 3_1:-1697160 | None:intergenic |
| CTCCCGAGAACAAGGTTATT+AGG | 0.367924 | 3_1:-1696297 | None:intergenic |
| AATTGTTTAGATTGGAGAAA+TGG | 0.368193 | 3_1:+1697092 | Msa0343500:intron |
| TTCACTCCTTTCGATTTATT+AGG | 0.370859 | 3_1:-1697120 | None:intergenic |
| ATAGGAGAAGAATGTCAAAA+AGG | 0.389857 | 3_1:+1696933 | Msa0343500:intron |
| TCCTTCATCACACTTTCATT+AGG | 0.397326 | 3_1:-1696787 | None:intergenic |
| CTTCTACCAATTCCATTCTT+GGG | 0.402072 | 3_1:-1696723 | None:intergenic |
| GTCCCTCTTACCTTCTGATC+TGG | 0.404383 | 3_1:-1696991 | None:intergenic |
| ATTTCCAATCTTTCCTTGTA+GGG | 0.414052 | 3_1:-1696959 | None:intergenic |
| TACTGCCCTGTCTCCAACTA+AGG | 0.416338 | 3_1:+1696651 | Msa0343500:CDS |
| GATCCCCTACAAGGAAAGAT+TGG | 0.422525 | 3_1:+1696955 | Msa0343500:CDS |
| AACAAAACTCATTCCCTGTA+AGG | 0.441975 | 3_1:-1697354 | None:intergenic |
| AGTTGTCCCAAGAATGGAAT+TGG | 0.444927 | 3_1:+1696717 | Msa0343500:CDS |
| GGATAAAGGTCGTCTAAATC+AGG | 0.447679 | 3_1:-1697416 | None:intergenic |
| TTCATTAATTTATGTTCAGA+TGG | 0.447875 | 3_1:+1697486 | Msa0343500:three_prime_UTR |
| AGACCTAATAACCTTGTTCT+CGG | 0.458179 | 3_1:+1696294 | Msa0343500:CDS |
| ACTAATCCACTCGAGGATAA+AGG | 0.460298 | 3_1:-1697430 | None:intergenic |
| TTCAGATGGGTATAGTTTCA+AGG | 0.466774 | 3_1:+1697500 | Msa0343500:three_prime_UTR |
| CAGAACCGCCACAACCCATA+AGG | 0.468050 | 3_1:+1693581 | Msa0343500:CDS |
| TCAGATTTATCATTTGAAGA+AGG | 0.468460 | 3_1:+1693785 | Msa0343500:CDS |
| TCTGAAACTGTGCGGTGTGA+GGG | 0.475218 | 3_1:-1693500 | None:intergenic |
| GAGTTTGCCCTTATGGGTTG+TGG | 0.476342 | 3_1:-1693589 | None:intergenic |
| TGGCACAGTTGTCCCAAGAA+TGG | 0.482338 | 3_1:+1696711 | Msa0343500:CDS |
| CTTTGCTGCCATCTTCGCTA+TGG | 0.485034 | 3_1:+1693476 | Msa0343500:exon |
| TTCATCACACTTTCATTAGG+AGG | 0.486397 | 3_1:-1696784 | None:intergenic |
| TTTATGGCTTTCATTGGGGA+AGG | 0.487396 | 3_1:+1696432 | Msa0343500:CDS |
| GTGAGGGGCCATAGCGAAGA+TGG | 0.490108 | 3_1:-1693484 | None:intergenic |
| CAAAACTCATTCCCTGTAAG+GGG | 0.492556 | 3_1:-1697352 | None:intergenic |
| TCCTAATGAAAGTGTGATGA+AGG | 0.493736 | 3_1:+1696786 | Msa0343500:CDS |
| GAAGCCAAGCAGCAGAAACA+TGG | 0.494056 | 3_1:+1697156 | Msa0343500:CDS |
| GTTTCACCACCAGCTTCAAA+AGG | 0.496777 | 3_1:-1693849 | None:intergenic |
| TTCTGAAACTGTGCGGTGTG+AGG | 0.506916 | 3_1:-1693501 | None:intergenic |
| TTCATGATCAAAAGACAGGC+AGG | 0.510453 | 3_1:-1697259 | None:intergenic |
| GTCTATGATCTGATAGAAGT+TGG | 0.514759 | 3_1:+1696336 | Msa0343500:CDS |
| GACAGGCAGGGAAAGACAAT+AGG | 0.520590 | 3_1:-1697246 | None:intergenic |
| TCATTAATTTATGTTCAGAT+GGG | 0.524102 | 3_1:+1697487 | Msa0343500:three_prime_UTR |
| ATAAATCGAAAGGAGTGAAG+AGG | 0.524729 | 3_1:+1697124 | Msa0343500:CDS |
| CATACATTCTCCCGAGAACA+AGG | 0.525815 | 3_1:-1696305 | None:intergenic |
| GACCTAATAACCTTGTTCTC+GGG | 0.526089 | 3_1:+1696295 | Msa0343500:CDS |
| AAAACACCTTAGTTGGAGAC+AGG | 0.528374 | 3_1:-1696657 | None:intergenic |
| TATAATTTGATCTACTACAA+TGG | 0.529365 | 3_1:-1697287 | None:intergenic |
| GGTAGAAGTTGGTCCTTCCA+TGG | 0.530363 | 3_1:+1696738 | Msa0343500:CDS |
| AGAACCGCCACAACCCATAA+GGG | 0.532404 | 3_1:+1693582 | Msa0343500:CDS |
| AGAATGGAATTGGTAGAAGT+TGG | 0.538211 | 3_1:+1696727 | Msa0343500:CDS |
| TTTCAGAACCGCCACAATCA+AGG | 0.545213 | 3_1:+1693516 | Msa0343500:CDS |
| TCGCTTCATGATCAAAAGAC+AGG | 0.548955 | 3_1:-1697263 | None:intergenic |
| TTTCATTAGGAGGACGATGC+CGG | 0.551349 | 3_1:-1696774 | None:intergenic |
| GAATTTAAATCTTGCCGGAG+TGG | 0.559897 | 3_1:+1696612 | Msa0343500:CDS |
| ACAAAACTCATTCCCTGTAA+GGG | 0.559993 | 3_1:-1697353 | None:intergenic |
| TTTCCAATCTTTCCTTGTAG+GGG | 0.560156 | 3_1:-1696958 | None:intergenic |
| CCGGCGAATAACCATATCCA+TGG | 0.560635 | 3_1:-1696755 | None:intergenic |
| TGATAAGAAAATAGCTCCAA+AGG | 0.560881 | 3_1:+1696395 | Msa0343500:CDS |
| AGGAAGCCATGAAAACTTCA+AGG | 0.562762 | 3_1:+1696806 | Msa0343500:CDS |
| TAGATCAAATTATAATACAT+TGG | 0.565915 | 3_1:+1697296 | Msa0343500:three_prime_UTR |
| CCATGGATATGGTTATTCGC+CGG | 0.570411 | 3_1:+1696755 | Msa0343500:CDS |
| TGTTTATATTCCAGATCAGA+AGG | 0.574269 | 3_1:+1696981 | Msa0343500:CDS |
| AAGCCAAGCAGCAGAAACAT+GGG | 0.578219 | 3_1:+1697157 | Msa0343500:CDS |
| AAGAAAATAGCTCCAAAGGA+AGG | 0.585681 | 3_1:+1696399 | Msa0343500:CDS |
| TAAATCGAAAGGAGTGAAGA+GGG | 0.586006 | 3_1:+1697125 | Msa0343500:CDS |
| GAACGAACTTAAACAGCTGA+AGG | 0.586198 | 3_1:+1696467 | Msa0343500:CDS |
| CTGAAACTGTGCGGTGTGAG+GGG | 0.595983 | 3_1:-1693499 | None:intergenic |
| TACATATGCACGGTCCACTC+CGG | 0.600615 | 3_1:-1696626 | None:intergenic |
| GGCGGTTCTGAATTCAGAGA+AGG | 0.605630 | 3_1:-1693568 | None:intergenic |
| CTTCTATCAGATCATAGACA+TGG | 0.608305 | 3_1:-1696332 | None:intergenic |
| AGACGACCTTTATCCTCGAG+TGG | 0.616955 | 3_1:+1697424 | Msa0343500:three_prime_UTR |
| CGAATAACCATATCCATGGA+AGG | 0.616987 | 3_1:-1696751 | None:intergenic |
| GGAAGCCATGAAAACTTCAA+GGG | 0.623284 | 3_1:+1696807 | Msa0343500:CDS |
| TTTGCCCTTATGGGTTGTGG+CGG | 0.625672 | 3_1:-1693586 | None:intergenic |
| GTGCGCCACCTTGATTGTGG+CGG | 0.646937 | 3_1:-1693524 | None:intergenic |
| TCATGATCAAAAGACAGGCA+GGG | 0.651541 | 3_1:-1697258 | None:intergenic |
| AAACACCTTAGTTGGAGACA+GGG | 0.662381 | 3_1:-1696656 | None:intergenic |
| ACCCTAAAACACCAAAACGA+AGG | 0.664314 | 3_1:+1693447 | None:intergenic |
| AAAACTCATTCCCTGTAAGG+GGG | 0.666511 | 3_1:-1697351 | None:intergenic |
| TCATGGAACCAAAACAAGTG+CGG | 0.674518 | 3_1:+1693743 | Msa0343500:CDS |
| TGTGTGCGCCACCTTGATTG+TGG | 0.674580 | 3_1:-1693527 | None:intergenic |
| GGGCAGTACATACATATGCA+CGG | 0.685032 | 3_1:-1696636 | None:intergenic |
| ACTACTCACTAATCCACTCG+AGG | 0.689211 | 3_1:-1697437 | None:intergenic |
| CAGAACCGCCACAATCAAGG+TGG | 0.730734 | 3_1:+1693519 | Msa0343500:CDS |
| GTGGCGGTTCTGAAACTGTG+CGG | 0.750122 | 3_1:-1693508 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTATAATATAATATTTT+AGG | - | chr3_1:1697223-1697242 | None:intergenic | 0.0% |
| !!! | TTTTTATAGTTTTATGATTA+AGG | + | chr3_1:1693993-1694012 | Msa0343500:intron | 10.0% |
| !! | TTAAAAAAATTAGGAATTTA+TGG | + | chr3_1:1694689-1694708 | Msa0343500:intron | 10.0% |
| !! | TATGAAAATAAATTGAAAAA+AGG | + | chr3_1:1695843-1695862 | Msa0343500:intron | 10.0% |
| !! | ATTGAGAAAAATAAAATAAA+AGG | - | chr3_1:1696072-1696091 | None:intergenic | 10.0% |
| !! | AACTTATAGCTTATATAAAA+TGG | - | chr3_1:1694253-1694272 | None:intergenic | 15.0% |
| !! | TTTAGCTATAAAAATAGTTT+AGG | - | chr3_1:1694463-1694482 | None:intergenic | 15.0% |
| !!! | TTTACTTTTTACCATTTTTA+TGG | + | chr3_1:1694659-1694678 | Msa0343500:intron | 15.0% |
| !! | TATTATTAAGTCATTACAAT+TGG | + | chr3_1:1695279-1695298 | Msa0343500:intron | 15.0% |
| !!! | CAATTATTTTTTAGATTTAG+AGG | - | chr3_1:1696147-1696166 | None:intergenic | 15.0% |
| !! | TAGATCAAATTATAATACAT+TGG | + | chr3_1:1697296-1697315 | Msa0343500:three_prime_UTR | 15.0% |
| !! | ATTAATGAACGTATTAAAAT+AGG | - | chr3_1:1697475-1697494 | None:intergenic | 15.0% |
| !! | TATGATTAAGGAATTAGAAT+TGG | + | chr3_1:1694005-1694024 | Msa0343500:intron | 20.0% |
| !!! | GTACATGTTTTAAAAAAGTT+AGG | + | chr3_1:1694117-1694136 | Msa0343500:intron | 20.0% |
| !!! | TTTGAAAATGAGTTGAAAAA+AGG | + | chr3_1:1694549-1694568 | Msa0343500:intron | 20.0% |
| !!! | TTGAAAATGAGTTGAAAAAA+GGG | + | chr3_1:1694550-1694569 | Msa0343500:intron | 20.0% |
| !!! | ACATTTTTAGTGAATTACAT+AGG | + | chr3_1:1694631-1694650 | Msa0343500:intron | 20.0% |
| !! | TTAAAACAAGTCCATAAAAA+TGG | - | chr3_1:1694673-1694692 | None:intergenic | 20.0% |
| !!! | GGACTTGTTTTAAAAAAATT+AGG | + | chr3_1:1694680-1694699 | Msa0343500:intron | 20.0% |
| !! | ACTTATAGCTTATATGAAAA+TGG | - | chr3_1:1694904-1694923 | None:intergenic | 20.0% |
| !! | CTATTATTCAGACATTTATT+TGG | + | chr3_1:1695214-1695233 | Msa0343500:intron | 20.0% |
| !! | TTAACAAAGGTTCTTAAAAA+TGG | - | chr3_1:1695382-1695401 | None:intergenic | 20.0% |
| !! | AACCTTTGTTAAAATAAGTT+AGG | + | chr3_1:1695390-1695409 | Msa0343500:intron | 20.0% |
| !!! | TTCCTAACTTATTTTAACAA+AGG | - | chr3_1:1695395-1695414 | None:intergenic | 20.0% |
| !!! | AACTTTGTTTTTAAGCTATT+TGG | + | chr3_1:1695419-1695438 | Msa0343500:intron | 20.0% |
| !!! | AATGTTTTTATAAGCTATGT+TGG | + | chr3_1:1695814-1695833 | Msa0343500:intron | 20.0% |
| !!! | TTATTTTTTAGATTTAGAGG+AGG | - | chr3_1:1696144-1696163 | None:intergenic | 20.0% |
| !!! | TCGATTTTAATTGTTTAGAT+TGG | + | chr3_1:1697084-1697103 | Msa0343500:intron | 20.0% |
| !! | TATAATTTGATCTACTACAA+TGG | - | chr3_1:1697290-1697309 | None:intergenic | 20.0% |
| !! | ACATTATGCTTACAATTAAA+TGG | - | chr3_1:1697381-1697400 | None:intergenic | 20.0% |
| !! | TTCATTAATTTATGTTCAGA+TGG | + | chr3_1:1697486-1697505 | Msa0343500:three_prime_UTR | 20.0% |
| !! | TCATTAATTTATGTTCAGAT+GGG | + | chr3_1:1697487-1697506 | Msa0343500:three_prime_UTR | 20.0% |
| !!! | ATGTTCTGATATATTTTGTT+TGG | - | chr3_1:1697533-1697552 | None:intergenic | 20.0% |
| !! | ATGTTCTGATATACTTTATA+AGG | - | chr3_1:1697559-1697578 | None:intergenic | 20.0% |
| ! | ATGAAAAGATGAAGTAATGA+TGG | - | chr3_1:1693646-1693665 | None:intergenic | 25.0% |
| ! | AATCATGGTGTTTGATTAAA+TGG | - | chr3_1:1693670-1693689 | None:intergenic | 25.0% |
| ! | AAACACAAAAACATGAATCA+TGG | - | chr3_1:1693685-1693704 | None:intergenic | 25.0% |
| !!! | TGTTTTTGTGTTTTTGTTAC+AGG | + | chr3_1:1693692-1693711 | Msa0343500:intron | 25.0% |
| ! | TCAGATTTATCATTTGAAGA+AGG | + | chr3_1:1693785-1693804 | Msa0343500:CDS | 25.0% |
| !!! | AATATTAAACCTTTTGAAGC+TGG | + | chr3_1:1693840-1693859 | Msa0343500:CDS | 25.0% |
| !!! | TGAGTTTGTTTTTAAGGTTT+TGG | + | chr3_1:1693951-1693970 | Msa0343500:intron | 25.0% |
| !!! | TTAAGTTGATAATCCAAACA+GGG | - | chr3_1:1694162-1694181 | None:intergenic | 25.0% |
| !!! | ATTAAGTTGATAATCCAAAC+AGG | - | chr3_1:1694163-1694182 | None:intergenic | 25.0% |
| !!! | GTTGTTTTCATTAGCTATTT+TGG | + | chr3_1:1694270-1694289 | Msa0343500:intron | 25.0% |
| !! | ATTGGTAGTAGATAAGTTTA+AGG | + | chr3_1:1694368-1694387 | Msa0343500:intron | 25.0% |
| !! | TTGGTAGTAGATAAGTTTAA+GGG | + | chr3_1:1694369-1694388 | Msa0343500:intron | 25.0% |
| !!! | GTTGTTTTTATAAGCTACAT+TGG | + | chr3_1:1694521-1694540 | Msa0343500:intron | 25.0% |
| !! | TGAAAAAAGGGTATGAAAAT+TGG | + | chr3_1:1694562-1694581 | Msa0343500:intron | 25.0% |
| !!! | GGACTTGTTTTAAAAAAGTT+AGG | + | chr3_1:1694710-1694729 | Msa0343500:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+GGG | - | chr3_1:1694798-1694817 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | - | chr3_1:1694799-1694818 | None:intergenic | 25.0% |
| !!! | GTTCTTTCTAAAATAGCTAA+TGG | - | chr3_1:1694932-1694951 | None:intergenic | 25.0% |
| ! | AATAGAAAACAACAAGTTTC+GGG | - | chr3_1:1695193-1695212 | None:intergenic | 25.0% |
| ! | CAATAGAAAACAACAAGTTT+CGG | - | chr3_1:1695194-1695213 | None:intergenic | 25.0% |
| ! | TTCTTAAAAATGGTGAAAGT+AGG | - | chr3_1:1695372-1695391 | None:intergenic | 25.0% |
| !! | CCTATTGACATATATTTTGT+GGG | - | chr3_1:1695915-1695934 | None:intergenic | 25.0% |
| !! | ACCTATTGACATATATTTTG+TGG | - | chr3_1:1695916-1695935 | None:intergenic | 25.0% |
| ! | TAGTTAGCAAATCTCAATAT+AGG | + | chr3_1:1696113-1696132 | Msa0343500:intron | 25.0% |
| !!! | AACTCAATTATTTTTCAGAG+GGG | - | chr3_1:1696172-1696191 | None:intergenic | 25.0% |
| !!! | GAACTCAATTATTTTTCAGA+GGG | - | chr3_1:1696173-1696192 | None:intergenic | 25.0% |
| !!! | GTTGGTATTGAAAATTTTAG+AGG | + | chr3_1:1696354-1696373 | Msa0343500:CDS | 25.0% |
| !!! | TATTGAAAATTTTAGAGGCA+TGG | + | chr3_1:1696359-1696378 | Msa0343500:CDS | 25.0% |
| !!! | AATTGGTTTACCTTTTTCTT+TGG | - | chr3_1:1696838-1696857 | None:intergenic | 25.0% |
| ! | ACTTGAAAGATTTAGAGAAT+TGG | - | chr3_1:1696855-1696874 | None:intergenic | 25.0% |
| ! | AATTGTTTAGATTGGAGAAA+TGG | + | chr3_1:1697092-1697111 | Msa0343500:intron | 25.0% |
| !! | TTTTTGTTACAGGTTGAAAC+TGG | + | chr3_1:1693702-1693721 | Msa0343500:intron | 30.0% |
| !! | TTTTGTTACAGGTTGAAACT+GGG | + | chr3_1:1693703-1693722 | Msa0343500:intron | 30.0% |
| !!! | CGTTGTTGAGTTTGTTTTTA+AGG | + | chr3_1:1693945-1693964 | Msa0343500:intron | 30.0% |
| !!! | GTTTGTTTTTAAGGTTTTGG+TGG | + | chr3_1:1693954-1693973 | Msa0343500:intron | 30.0% |
| ! | TAGGAATTTGAAACCAAACT+AGG | + | chr3_1:1694136-1694155 | Msa0343500:intron | 30.0% |
| CATAAGCTGTTTATTCAAAC+CGG | - | chr3_1:1694395-1694414 | None:intergenic | 30.0% | |
| GTTTGTCATGAAACTGATAT+AGG | + | chr3_1:1694772-1694791 | Msa0343500:intron | 30.0% | |
| !! | GCTGTTTTCACAAGTTATTA+TGG | + | chr3_1:1695027-1695046 | Msa0343500:intron | 30.0% |
| !! | TAGCACTGATAAGACTATTT+GGG | - | chr3_1:1695092-1695111 | None:intergenic | 30.0% |
| !! | TTAGCACTGATAAGACTATT+TGG | - | chr3_1:1695093-1695112 | None:intergenic | 30.0% |
| AAAGTAGGTAAAAACCTTTG+TGG | - | chr3_1:1695357-1695376 | None:intergenic | 30.0% | |
| GTTTGCCATTAAACCAAATT+AGG | + | chr3_1:1695446-1695465 | Msa0343500:intron | 30.0% | |
| ! | TTAAGTTGTTCACCCAAATA+GGG | - | chr3_1:1695472-1695491 | None:intergenic | 30.0% |
| ! | ATTAAGTTGTTCACCCAAAT+AGG | - | chr3_1:1695473-1695492 | None:intergenic | 30.0% |
| ! | TTATGAGCTATAAGCTGTTT+TGG | + | chr3_1:1695552-1695571 | Msa0343500:intron | 30.0% |
| AGACACTTAAACTTATCTAC+TGG | - | chr3_1:1695668-1695687 | None:intergenic | 30.0% | |
| GATAAGTTTAAGTGTCTGTT+TGG | + | chr3_1:1695671-1695690 | Msa0343500:intron | 30.0% | |
| ! | TATATTTTGTGGGACTGTTT+AGG | - | chr3_1:1695905-1695924 | None:intergenic | 30.0% |
| CCCACAAAATATATGTCAAT+AGG | + | chr3_1:1695912-1695931 | Msa0343500:intron | 30.0% | |
| ATGATTACAAAGAGTCTGTT+TGG | - | chr3_1:1695957-1695976 | None:intergenic | 30.0% | |
| TGAACTGCAATCATAACTAA+GGG | - | chr3_1:1695990-1696009 | None:intergenic | 30.0% | |
| TTAGTTATGATTGCAGTTCA+GGG | + | chr3_1:1695990-1696009 | Msa0343500:intron | 30.0% | |
| !! | GGAACTCAATTATTTTTCAG+AGG | - | chr3_1:1696174-1696193 | None:intergenic | 30.0% |
| GCTCTTACTATGTATGAATA+AGG | - | chr3_1:1696195-1696214 | None:intergenic | 30.0% | |
| TAAGAGCTCCAAATATTACA+TGG | + | chr3_1:1696208-1696227 | Msa0343500:intron | 30.0% | |
| ATCGCTTTCCATGTAATATT+TGG | - | chr3_1:1696219-1696238 | None:intergenic | 30.0% | |
| AGATCCATACTGCAAAATAT+AGG | - | chr3_1:1696262-1696281 | None:intergenic | 30.0% | |
| TGATAAGAAAATAGCTCCAA+AGG | + | chr3_1:1696395-1696414 | Msa0343500:CDS | 30.0% | |
| !! | GTTTTACTTGATCTTTTTCG+CGG | + | chr3_1:1696492-1696511 | Msa0343500:CDS | 30.0% |
| ! | TCTCTTTCACATTCTTTTGT+TGG | + | chr3_1:1696539-1696558 | Msa0343500:intron | 30.0% |
| !! | GTACTTGTTCTGTTTCTAAT+AGG | + | chr3_1:1696915-1696934 | Msa0343500:intron | 30.0% |
| ATAGGAGAAGAATGTCAAAA+AGG | + | chr3_1:1696933-1696952 | Msa0343500:intron | 30.0% | |
| ATTTCCAATCTTTCCTTGTA+GGG | - | chr3_1:1696962-1696981 | None:intergenic | 30.0% | |
| TGTTTATATTCCAGATCAGA+AGG | + | chr3_1:1696981-1697000 | Msa0343500:CDS | 30.0% | |
| ! | GTTTTGCCTAATAAATCGAA+AGG | + | chr3_1:1697114-1697133 | Msa0343500:CDS | 30.0% |
| TTCACTCCTTTCGATTTATT+AGG | - | chr3_1:1697123-1697142 | None:intergenic | 30.0% | |
| ! | GTAATGATGGTTACGAGTTT+TGG | - | chr3_1:1693633-1693652 | None:intergenic | 35.0% |
| ! | AAGAAAACGTTGTTGCTTCA+TGG | + | chr3_1:1693726-1693745 | Msa0343500:CDS | 35.0% |
| ! | ATTCAAAACCGCACTTGTTT+TGG | - | chr3_1:1693754-1693773 | None:intergenic | 35.0% |
| !!! | ATTAAACCTTTTGAAGCTGG+TGG | + | chr3_1:1693843-1693862 | Msa0343500:CDS | 35.0% |
| CAATTCACTTACACAACAAG+AGG | - | chr3_1:1694069-1694088 | None:intergenic | 35.0% | |
| GTTGTGTAAGTGAATTGCAT+AGG | + | chr3_1:1694072-1694091 | Msa0343500:intron | 35.0% | |
| TAGTAGATAAGTTTAAGGGC+CGG | + | chr3_1:1694373-1694392 | Msa0343500:intron | 35.0% | |
| AGTCTATCCAAATAAGCTCT+TGG | + | chr3_1:1695135-1695154 | Msa0343500:intron | 35.0% | |
| ATCACAACCAAGAGCTTATT+TGG | - | chr3_1:1695145-1695164 | None:intergenic | 35.0% | |
| TTGGTTGTGATAGTAGATCA+GGG | + | chr3_1:1695154-1695173 | Msa0343500:intron | 35.0% | |
| ! | TAGGGCCTAATTTGGTTTAA+TGG | - | chr3_1:1695454-1695473 | None:intergenic | 35.0% |
| AAACCAAATTAGGCCCTATT+TGG | + | chr3_1:1695456-1695475 | Msa0343500:intron | 35.0% | |
| AACCAAATTAGGCCCTATTT+GGG | + | chr3_1:1695457-1695476 | Msa0343500:intron | 35.0% | |
| !!! | AAGCTGTTTTGGAAAGCTTA+AGG | + | chr3_1:1695563-1695582 | Msa0343500:intron | 35.0% |
| CTGAACTGCAATCATAACTA+AGG | - | chr3_1:1695991-1696010 | None:intergenic | 35.0% | |
| CTTAGTTATGATTGCAGTTC+AGG | + | chr3_1:1695989-1696008 | Msa0343500:intron | 35.0% | |
| TAGTTATGATTGCAGTTCAG+GGG | + | chr3_1:1695991-1696010 | Msa0343500:intron | 35.0% | |
| ! | GTTGCCTATATTTTGCAGTA+TGG | + | chr3_1:1696255-1696274 | Msa0343500:intron | 35.0% |
| AGACCTAATAACCTTGTTCT+CGG | + | chr3_1:1696294-1696313 | Msa0343500:CDS | 35.0% | |
| CTTCTATCAGATCATAGACA+TGG | - | chr3_1:1696335-1696354 | None:intergenic | 35.0% | |
| GTCTATGATCTGATAGAAGT+TGG | + | chr3_1:1696336-1696355 | Msa0343500:CDS | 35.0% | |
| AAGAAAATAGCTCCAAAGGA+AGG | + | chr3_1:1696399-1696418 | Msa0343500:CDS | 35.0% | |
| ! | AAGCCTTTTATGGCTTTCAT+TGG | + | chr3_1:1696426-1696445 | Msa0343500:CDS | 35.0% |
| ! | AGCCTTTTATGGCTTTCATT+GGG | + | chr3_1:1696427-1696446 | Msa0343500:CDS | 35.0% |
| AAGTGATGCATATGATTCAC+AGG | + | chr3_1:1696582-1696601 | Msa0343500:intron | 35.0% | |
| GTGGAGAATTTAAATCTTGC+CGG | + | chr3_1:1696607-1696626 | Msa0343500:CDS | 35.0% | |
| TGTGTGAAAAACACCTTAGT+TGG | - | chr3_1:1696667-1696686 | None:intergenic | 35.0% | |
| CTTCTACCAATTCCATTCTT+GGG | - | chr3_1:1696726-1696745 | None:intergenic | 35.0% | |
| ACTTCTACCAATTCCATTCT+TGG | - | chr3_1:1696727-1696746 | None:intergenic | 35.0% | |
| AGAATGGAATTGGTAGAAGT+TGG | + | chr3_1:1696727-1696746 | Msa0343500:CDS | 35.0% | |
| TTCATCACACTTTCATTAGG+AGG | - | chr3_1:1696787-1696806 | None:intergenic | 35.0% | |
| ! | TCCTAATGAAAGTGTGATGA+AGG | + | chr3_1:1696786-1696805 | Msa0343500:CDS | 35.0% |
| TCCTTCATCACACTTTCATT+AGG | - | chr3_1:1696790-1696809 | None:intergenic | 35.0% | |
| TTTCCAATCTTTCCTTGTAG+GGG | - | chr3_1:1696961-1696980 | None:intergenic | 35.0% | |
| CATTTCCAATCTTTCCTTGT+AGG | - | chr3_1:1696963-1696982 | None:intergenic | 35.0% | |
| ATAAATCGAAAGGAGTGAAG+AGG | + | chr3_1:1697124-1697143 | Msa0343500:CDS | 35.0% | |
| TAAATCGAAAGGAGTGAAGA+GGG | + | chr3_1:1697125-1697144 | Msa0343500:CDS | 35.0% | |
| ACAAAACTCATTCCCTGTAA+GGG | - | chr3_1:1697356-1697375 | None:intergenic | 35.0% | |
| AACAAAACTCATTCCCTGTA+AGG | - | chr3_1:1697357-1697376 | None:intergenic | 35.0% | |
| TTCAGATGGGTATAGTTTCA+AGG | + | chr3_1:1697500-1697519 | Msa0343500:three_prime_UTR | 35.0% | |
| ! | CAAAGAGAAGACCTTCGTTT+TGG | - | chr3_1:1693461-1693480 | None:intergenic | 40.0% |
| !!! | TTTTGGAGCACGTTTCTTGA+GGG | - | chr3_1:1693616-1693635 | None:intergenic | 40.0% |
| TCATGGAACCAAAACAAGTG+CGG | + | chr3_1:1693743-1693762 | Msa0343500:CDS | 40.0% | |
| TTGTGCGAAAAACTCCAAAG+AGG | - | chr3_1:1693874-1693893 | None:intergenic | 40.0% | |
| AACTGATTGCAGTCTCTTTC+TGG | + | chr3_1:1693896-1693915 | Msa0343500:CDS | 40.0% | |
| AACAAGCTGAGAACAGCTTA+TGG | + | chr3_1:1694305-1694324 | Msa0343500:intron | 40.0% | |
| AAACTGATATAGGCCCTGTT+TGG | + | chr3_1:1694782-1694801 | Msa0343500:intron | 40.0% | |
| CTTGGTTGTGATAGTAGATC+AGG | + | chr3_1:1695153-1695172 | Msa0343500:intron | 40.0% | |
| TGGTTGTGATAGTAGATCAG+GGG | + | chr3_1:1695155-1695174 | Msa0343500:intron | 40.0% | |
| GTTGTGTAAGTGAACCACAA+AGG | + | chr3_1:1695340-1695359 | Msa0343500:intron | 40.0% | |
| GACCTAATAACCTTGTTCTC+GGG | + | chr3_1:1696295-1696314 | Msa0343500:CDS | 40.0% | |
| ! | AAAGGCTTTGATCCTTCCTT+TGG | - | chr3_1:1696414-1696433 | None:intergenic | 40.0% |
| ! | GGAAGGATCAAAGCCTTTTA+TGG | + | chr3_1:1696416-1696435 | Msa0343500:CDS | 40.0% |
| ! | GCCTTTTATGGCTTTCATTG+GGG | + | chr3_1:1696428-1696447 | Msa0343500:CDS | 40.0% |
| TCCCCAATGAAAGCCATAAA+AGG | - | chr3_1:1696432-1696451 | None:intergenic | 40.0% | |
| TTTATGGCTTTCATTGGGGA+AGG | + | chr3_1:1696432-1696451 | Msa0343500:CDS | 40.0% | |
| GAACGAACTTAAACAGCTGA+AGG | + | chr3_1:1696467-1696486 | Msa0343500:CDS | 40.0% | |
| TGCATATGATTCACAGGTTG+TGG | + | chr3_1:1696588-1696607 | Msa0343500:intron | 40.0% | |
| GAATTTAAATCTTGCCGGAG+TGG | + | chr3_1:1696612-1696631 | Msa0343500:CDS | 40.0% | |
| AAACACCTTAGTTGGAGACA+GGG | - | chr3_1:1696659-1696678 | None:intergenic | 40.0% | |
| AAAACACCTTAGTTGGAGAC+AGG | - | chr3_1:1696660-1696679 | None:intergenic | 40.0% | |
| ! | TTTTCACACACTGTGCATTG+CGG | + | chr3_1:1696677-1696696 | Msa0343500:CDS | 40.0% |
| GCATTGCGGTTGAAAAAATC+TGG | + | chr3_1:1696691-1696710 | Msa0343500:CDS | 40.0% | |
| AGTTGTCCCAAGAATGGAAT+TGG | + | chr3_1:1696717-1696736 | Msa0343500:CDS | 40.0% | |
| CGAATAACCATATCCATGGA+AGG | - | chr3_1:1696754-1696773 | None:intergenic | 40.0% | |
| AGGAAGCCATGAAAACTTCA+AGG | + | chr3_1:1696806-1696825 | Msa0343500:CDS | 40.0% | |
| GGAAGCCATGAAAACTTCAA+GGG | + | chr3_1:1696807-1696826 | Msa0343500:CDS | 40.0% | |
| ! | CTTGTCCCTTGAAGTTTTCA+TGG | - | chr3_1:1696815-1696834 | None:intergenic | 40.0% |
| AAGGGACAAGCCAAAGAAAA+AGG | + | chr3_1:1696825-1696844 | Msa0343500:CDS | 40.0% | |
| ATTCCAGATCAGAAGGTAAG+AGG | + | chr3_1:1696988-1697007 | Msa0343500:intron | 40.0% | |
| TTCCAGATCAGAAGGTAAGA+GGG | + | chr3_1:1696989-1697008 | Msa0343500:intron | 40.0% | |
| TCATGATCAAAAGACAGGCA+GGG | - | chr3_1:1697261-1697280 | None:intergenic | 40.0% | |
| TTCATGATCAAAAGACAGGC+AGG | - | chr3_1:1697262-1697281 | None:intergenic | 40.0% | |
| TCGCTTCATGATCAAAAGAC+AGG | - | chr3_1:1697266-1697285 | None:intergenic | 40.0% | |
| ATTCTAGATTTCCCCCTTAC+AGG | + | chr3_1:1697340-1697359 | Msa0343500:three_prime_UTR | 40.0% | |
| TTCTAGATTTCCCCCTTACA+GGG | + | chr3_1:1697341-1697360 | Msa0343500:three_prime_UTR | 40.0% | |
| AAAACTCATTCCCTGTAAGG+GGG | - | chr3_1:1697354-1697373 | None:intergenic | 40.0% | |
| CAAAACTCATTCCCTGTAAG+GGG | - | chr3_1:1697355-1697374 | None:intergenic | 40.0% | |
| GGATAAAGGTCGTCTAAATC+AGG | - | chr3_1:1697419-1697438 | None:intergenic | 40.0% | |
| ACTAATCCACTCGAGGATAA+AGG | - | chr3_1:1697433-1697452 | None:intergenic | 40.0% | |
| TTTCAGAACCGCCACAATCA+AGG | + | chr3_1:1693516-1693535 | Msa0343500:CDS | 45.0% | |
| !!! | GTTTTGGAGCACGTTTCTTG+AGG | - | chr3_1:1693617-1693636 | None:intergenic | 45.0% |
| GTTTCACCACCAGCTTCAAA+AGG | - | chr3_1:1693852-1693871 | None:intergenic | 45.0% | |
| AAACCAAACTAGGCCCTGTT+TGG | + | chr3_1:1694146-1694165 | Msa0343500:intron | 45.0% | |
| AATCCAAACAGGGCCTAGTT+TGG | - | chr3_1:1694152-1694171 | None:intergenic | 45.0% | |
| TTCCATAAGCTCTCCTTAGC+AGG | + | chr3_1:1694332-1694351 | Msa0343500:intron | 45.0% | |
| TCCATAAGCTCTCCTTAGCA+GGG | + | chr3_1:1694333-1694352 | Msa0343500:intron | 45.0% | |
| CACCCAAATAGGGCCTAATT+TGG | - | chr3_1:1695462-1695481 | None:intergenic | 45.0% | |
| AAGCACTTGTGACACTGCTT+GGG | - | chr3_1:1695642-1695661 | None:intergenic | 45.0% | |
| TAAGCACTTGTGACACTGCT+TGG | - | chr3_1:1695643-1695662 | None:intergenic | 45.0% | |
| TACCCGAAACTTGTGATGCT+AGG | + | chr3_1:1696046-1696065 | Msa0343500:intron | 45.0% | |
| AGGCCTAGCATCACAAGTTT+CGG | - | chr3_1:1696052-1696071 | None:intergenic | 45.0% | |
| CTCCCGAGAACAAGGTTATT+AGG | - | chr3_1:1696300-1696319 | None:intergenic | 45.0% | |
| CATACATTCTCCCGAGAACA+AGG | - | chr3_1:1696308-1696327 | None:intergenic | 45.0% | |
| !! | ACTTGATCTTTTTCGCGGAG+AGG | + | chr3_1:1696497-1696516 | Msa0343500:CDS | 45.0% |
| ! | CACATTCTTTTGTTGGCAGC+TGG | + | chr3_1:1696546-1696565 | Msa0343500:intron | 45.0% |
| GGGCAGTACATACATATGCA+CGG | - | chr3_1:1696639-1696658 | None:intergenic | 45.0% | |
| AGTTGGTCCTTCCATGGATA+TGG | + | chr3_1:1696744-1696763 | Msa0343500:CDS | 45.0% | |
| CCATGGATATGGTTATTCGC+CGG | + | chr3_1:1696755-1696774 | Msa0343500:CDS | 45.0% | |
| TTTCATTAGGAGGACGATGC+CGG | - | chr3_1:1696777-1696796 | None:intergenic | 45.0% | |
| GTCAAAAAGGATCCCCTACA+AGG | + | chr3_1:1696946-1696965 | Msa0343500:CDS | 45.0% | |
| GATCCCCTACAAGGAAAGAT+TGG | + | chr3_1:1696955-1696974 | Msa0343500:CDS | 45.0% | |
| AAGCCAAGCAGCAGAAACAT+GGG | + | chr3_1:1697157-1697176 | Msa0343500:CDS | 45.0% | |
| GCATGCATCGAAAAAGCAGA+AGG | + | chr3_1:1697188-1697207 | Msa0343500:CDS | 45.0% | |
| ACTACTCACTAATCCACTCG+AGG | - | chr3_1:1697440-1697459 | None:intergenic | 45.0% | |
| CTTTGCTGCCATCTTCGCTA+TGG | + | chr3_1:1693476-1693495 | Msa0343500:exon | 50.0% | |
| ! | TCTGAAACTGTGCGGTGTGA+GGG | - | chr3_1:1693503-1693522 | None:intergenic | 50.0% |
| !! | TTCTGAAACTGTGCGGTGTG+AGG | - | chr3_1:1693504-1693523 | None:intergenic | 50.0% |
| !! | GGCGGTTCTGAATTCAGAGA+AGG | - | chr3_1:1693571-1693590 | None:intergenic | 50.0% |
| AGAACCGCCACAACCCATAA+GGG | + | chr3_1:1693582-1693601 | Msa0343500:CDS | 50.0% | |
| ! | TTTGCCCTTATGGGTTGTGG+CGG | - | chr3_1:1693589-1693608 | None:intergenic | 50.0% |
| ! | GAGTTTGCCCTTATGGGTTG+TGG | - | chr3_1:1693592-1693611 | None:intergenic | 50.0% |
| ! | AGCTGGTGGTGAAACCTCTT+TGG | + | chr3_1:1693857-1693876 | Msa0343500:CDS | 50.0% |
| ACCCTGCTAAGGAGAGCTTA+TGG | - | chr3_1:1694337-1694356 | None:intergenic | 50.0% | |
| ACACTGCTTGGGAGAGCTTA+TGG | - | chr3_1:1695631-1695650 | None:intergenic | 50.0% | |
| GGCCTAGCATCACAAGTTTC+GGG | - | chr3_1:1696051-1696070 | None:intergenic | 50.0% | |
| TACATATGCACGGTCCACTC+CGG | - | chr3_1:1696629-1696648 | None:intergenic | 50.0% | |
| TACTGCCCTGTCTCCAACTA+AGG | + | chr3_1:1696651-1696670 | Msa0343500:CDS | 50.0% | |
| TGGCACAGTTGTCCCAAGAA+TGG | + | chr3_1:1696711-1696730 | Msa0343500:CDS | 50.0% | |
| ! | GGTAGAAGTTGGTCCTTCCA+TGG | + | chr3_1:1696738-1696757 | Msa0343500:CDS | 50.0% |
| CCGGCGAATAACCATATCCA+TGG | - | chr3_1:1696758-1696777 | None:intergenic | 50.0% | |
| GTCCCTCTTACCTTCTGATC+TGG | - | chr3_1:1696994-1697013 | None:intergenic | 50.0% | |
| ! | GTTTCTGCTGCTTGGCTTCT+CGG | - | chr3_1:1697155-1697174 | None:intergenic | 50.0% |
| GAAGCCAAGCAGCAGAAACA+TGG | + | chr3_1:1697156-1697175 | Msa0343500:CDS | 50.0% | |
| ! | ACTCCCATGTTTCTGCTGCT+TGG | - | chr3_1:1697163-1697182 | None:intergenic | 50.0% |
| GACAGGCAGGGAAAGACAAT+AGG | - | chr3_1:1697249-1697268 | None:intergenic | 50.0% | |
| AGACGACCTTTATCCTCGAG+TGG | + | chr3_1:1697424-1697443 | Msa0343500:three_prime_UTR | 50.0% | |
| CTGAAACTGTGCGGTGTGAG+GGG | - | chr3_1:1693502-1693521 | None:intergenic | 55.0% | |
| !! | GTGGCGGTTCTGAAACTGTG+CGG | - | chr3_1:1693511-1693530 | None:intergenic | 55.0% |
| CAGAACCGCCACAATCAAGG+TGG | + | chr3_1:1693519-1693538 | Msa0343500:CDS | 55.0% | |
| TGTGTGCGCCACCTTGATTG+TGG | - | chr3_1:1693530-1693549 | None:intergenic | 55.0% | |
| CAGAACCGCCACAACCCATA+AGG | + | chr3_1:1693581-1693600 | Msa0343500:CDS | 55.0% | |
| GAGGGCGAGTTTGCCCTTAT+GGG | - | chr3_1:1693598-1693617 | None:intergenic | 55.0% | |
| TGAGGGCGAGTTTGCCCTTA+TGG | - | chr3_1:1693599-1693618 | None:intergenic | 55.0% | |
| AAGCACTCGTCACCCTGCTA+AGG | - | chr3_1:1694348-1694367 | None:intergenic | 55.0% | |
| GCAGGGTGACGAGTGCTTAT+TGG | + | chr3_1:1694350-1694369 | Msa0343500:intron | 55.0% | |
| GTGAGGGGCCATAGCGAAGA+TGG | - | chr3_1:1693487-1693506 | None:intergenic | 60.0% | |
| GTGCGCCACCTTGATTGTGG+CGG | - | chr3_1:1693527-1693546 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 1693455 | 1697583 | 1693455 | ID=Msa0343500;Name=Msa0343500 |
| chr3_1 | mRNA | 1693455 | 1697583 | 1693455 | ID=Msa0343500-mRNA-1;Parent=Msa0343500;Name=Msa0343500-mRNA-1;_AED=0.08;_eAED=0.08;_QI=40|1|1|1|1|1|6|359|341 |
| chr3_1 | exon | 1693455 | 1693638 | 1693455 | ID=Msa0343500-mRNA-1:exon:534;Parent=Msa0343500-mRNA-1 |
| chr3_1 | exon | 1693714 | 1693917 | 1693714 | ID=Msa0343500-mRNA-1:exon:535;Parent=Msa0343500-mRNA-1 |
| chr3_1 | exon | 1696273 | 1696518 | 1696273 | ID=Msa0343500-mRNA-1:exon:536;Parent=Msa0343500-mRNA-1 |
| chr3_1 | exon | 1696604 | 1696846 | 1696604 | ID=Msa0343500-mRNA-1:exon:537;Parent=Msa0343500-mRNA-1 |
| chr3_1 | exon | 1696937 | 1697002 | 1696937 | ID=Msa0343500-mRNA-1:exon:538;Parent=Msa0343500-mRNA-1 |
| chr3_1 | exon | 1697102 | 1697583 | 1697102 | ID=Msa0343500-mRNA-1:exon:539;Parent=Msa0343500-mRNA-1 |
| chr3_1 | five_prime_UTR | 1693455 | 1693494 | 1693455 | ID=Msa0343500-mRNA-1:five_prime_utr;Parent=Msa0343500-mRNA-1 |
| chr3_1 | CDS | 1693495 | 1693638 | 1693495 | ID=Msa0343500-mRNA-1:cds;Parent=Msa0343500-mRNA-1 |
| chr3_1 | CDS | 1693714 | 1693917 | 1693714 | ID=Msa0343500-mRNA-1:cds;Parent=Msa0343500-mRNA-1 |
| chr3_1 | CDS | 1696273 | 1696518 | 1696273 | ID=Msa0343500-mRNA-1:cds;Parent=Msa0343500-mRNA-1 |
| chr3_1 | CDS | 1696604 | 1696846 | 1696604 | ID=Msa0343500-mRNA-1:cds;Parent=Msa0343500-mRNA-1 |
| chr3_1 | CDS | 1696937 | 1697002 | 1696937 | ID=Msa0343500-mRNA-1:cds;Parent=Msa0343500-mRNA-1 |
| chr3_1 | CDS | 1697102 | 1697224 | 1697102 | ID=Msa0343500-mRNA-1:cds;Parent=Msa0343500-mRNA-1 |
| chr3_1 | three_prime_UTR | 1697225 | 1697583 | 1697225 | ID=Msa0343500-mRNA-1:three_prime_utr;Parent=Msa0343500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
