Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388770 | KEH18628.1 | 70.186 | 161 | 7 | 2 | 1 | 120 | 1 | 161 | 6.65e-68 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388770 | A0A072TP49 | 70.186 | 161 | 7 | 2 | 1 | 120 | 1 | 161 | 3.18e-68 | 211 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1388770 | Msa1406780 | 0.802546 | 5.330604e-49 | -8.615850e-47 |
| Msa1388770 | Msa1431850 | 0.812495 | 4.119889e-51 | -8.615850e-47 |
| Msa0669840 | Msa1388770 | 0.809976 | 1.449487e-50 | -8.615850e-47 |
| Msa0124130 | Msa1388770 | 0.836216 | 1.065826e-56 | -8.615850e-47 |
| Msa1228190 | Msa1388770 | 0.810042 | 1.403453e-50 | -8.615850e-47 |
| Msa1271260 | Msa1388770 | 0.802314 | 5.949772e-49 | -8.615850e-47 |
| Msa1316540 | Msa1388770 | 0.861109 | 1.292371e-63 | -8.615850e-47 |
| Msa0373960 | Msa1388770 | 0.803603 | 3.221686e-49 | -8.615850e-47 |
| Msa0406000 | Msa1388770 | 0.817494 | 3.203946e-52 | -8.615850e-47 |
| Msa0451400 | Msa1388770 | 0.827049 | 1.938689e-54 | -8.615850e-47 |
| Msa0999350 | Msa1388770 | 0.829453 | 5.103315e-55 | -8.615850e-47 |
| Msa0999400 | Msa1388770 | 0.823867 | 1.099029e-53 | -8.615850e-47 |
| Msa0359250 | Msa1388770 | 0.803280 | 3.758195e-49 | -8.615850e-47 |
| Msa1176580 | Msa1388770 | 0.988102 | 1.016862e-172 | -8.615850e-47 |
| Msa0492190 | Msa1388770 | 0.801963 | 7.026344e-49 | -8.615850e-47 |
| Msa0965310 | Msa1388770 | 0.805589 | 1.240877e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388770 | MtrunA17_Chr8g0346691 | 97.196 | 107 | 2 | 1 | 1 | 106 | 1 | 107 | 6.27e-71 | 210 |
| Msa1388770 | MtrunA17_Chr7g0275851 | 52.525 | 99 | 37 | 2 | 4 | 95 | 79 | 174 | 1.80e-25 | 97.4 |
| Msa1388770 | MtrunA17_Chr3g0126981 | 63.158 | 57 | 17 | 3 | 42 | 95 | 15 | 70 | 1.44e-12 | 60.8 |
| Msa1388770 | MtrunA17_Chr1g0146921 | 47.887 | 71 | 27 | 2 | 35 | 95 | 44 | 114 | 2.15e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1388770 | AT5G53030.1 | 46.591 | 88 | 41 | 2 | 14 | 95 | 18 | 105 | 9.08e-16 | 70.9 |
| Msa1388770 | AT5G53030.2 | 46.591 | 88 | 41 | 2 | 14 | 95 | 18 | 105 | 9.80e-16 | 70.5 |
| Msa1388770 | AT4G27810.1 | 50.538 | 93 | 35 | 4 | 13 | 95 | 15 | 106 | 1.10e-14 | 67.4 |
| Msa1388770 | AT4G00950.1 | 38.655 | 119 | 45 | 5 | 1 | 95 | 1 | 115 | 4.71e-11 | 58.5 |
Find 30 sgRNAs with CRISPR-Local
Find 424 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATCACCTACAACAGTTT+TGG | 0.286053 | tig0021182:-49201 | Msa1388770:CDS |
| CTCATGAATAATGGAAGTTT+TGG | 0.308636 | tig0021182:+49416 | None:intergenic |
| TTTGGATGGACCCTACAAAA+AGG | 0.345193 | tig0021182:-49183 | Msa1388770:CDS |
| GAAGCTTGTGAGGAAGAAAA+TGG | 0.395638 | tig0021182:-49449 | Msa1388770:CDS |
| AAGGATTGTTGTGATTCCTT+TGG | 0.404092 | tig0021182:-49164 | Msa1388770:CDS |
| GGTGGAGGGCTCATGAATAA+TGG | 0.418821 | tig0021182:+49407 | None:intergenic |
| TCCAACACTAGTCAAGTGTT+TGG | 0.431206 | tig0021182:-49258 | Msa1388770:CDS |
| ATCACAGCGTCAATACCATT+TGG | 0.439112 | tig0021182:-49338 | Msa1388770:CDS |
| ACAAGATCAGTACATGGTCT+TGG | 0.444506 | tig0021182:+49293 | None:intergenic |
| TCCAAACACTTGACTAGTGT+TGG | 0.454319 | tig0021182:+49257 | None:intergenic |
| CTCTCTGGTGAATGCATTGG+TGG | 0.455474 | tig0021182:+49389 | None:intergenic |
| AGCGTCAATACCATTTGGTT+GGG | 0.459092 | tig0021182:-49333 | Msa1388770:CDS |
| TGATTTGATTTGGGTTATGC+TGG | 0.466802 | tig0021182:-43757 | Msa1388770:CDS |
| GGTCCATCCAAAACTGTTGT+AGG | 0.469058 | tig0021182:+49194 | None:intergenic |
| TTTGTATCAATGAACAACCT+TGG | 0.486786 | tig0021182:+49227 | None:intergenic |
| CAGCGTCAATACCATTTGGT+TGG | 0.495412 | tig0021182:-49334 | Msa1388770:CDS |
| TTTGGTTGGGAAGAAGAGCC+AGG | 0.497915 | tig0021182:-49320 | Msa1388770:CDS |
| GGCTCTTCTTCCCAACCAAA+TGG | 0.498578 | tig0021182:+49323 | None:intergenic |
| TCTGGTGAATGCATTGGTGG+AGG | 0.503654 | tig0021182:+49392 | None:intergenic |
| TCCAAAACTGTTGTAGGTGA+TGG | 0.506928 | tig0021182:+49200 | None:intergenic |
| GATCTCTCTGGTGAATGCAT+TGG | 0.516177 | tig0021182:+49386 | None:intergenic |
| CTGGTGAATGCATTGGTGGA+GGG | 0.527666 | tig0021182:+49393 | None:intergenic |
| TTTCCCACTTTCAAAACCAA+AGG | 0.551891 | tig0021182:+49148 | None:intergenic |
| ATGCATTCACCAGAGAGATC+AGG | 0.552291 | tig0021182:-49383 | Msa1388770:CDS |
| AGTGAAAATGGAAGCTTGTG+AGG | 0.556127 | tig0021182:-49459 | None:intergenic |
| GTATCAATGAACAACCTTGG+AGG | 0.583736 | tig0021182:+49230 | None:intergenic |
| AGTGTTTGGAACTTCCTCCA+AGG | 0.603766 | tig0021182:-49244 | Msa1388770:CDS |
| AATGTTACAAGATCAGTACA+TGG | 0.674281 | tig0021182:+49287 | None:intergenic |
| GACGCTGTGATATGAAGCGG+TGG | 0.706625 | tig0021182:+49350 | None:intergenic |
| ATTGACGCTGTGATATGAAG+CGG | 0.722076 | tig0021182:+49347 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATGTGAAATATGATA+AGG | + | tig0021182:47253-47272 | None:intergenic | 15.0% |
| !! | TAAGAATTATTATGAAACAA+TGG | + | tig0021182:49067-49086 | None:intergenic | 15.0% |
| !! | TTGTTTCATAATAATTCTTA+AGG | - | tig0021182:49067-49086 | Msa1388770:intron | 15.0% |
| !! | ATAAAACTTTGTTAATGTAT+GGG | + | tig0021182:49366-49385 | None:intergenic | 15.0% |
| !! | TATAAAACTTTGTTAATGTA+TGG | + | tig0021182:49367-49386 | None:intergenic | 15.0% |
| !!! | AATAAACTTGTTTTCATCAA+TGG | - | tig0021182:44646-44665 | Msa1388770:intron | 20.0% |
| !! | AATTAATAAGGTGTATTCAT+TGG | - | tig0021182:45125-45144 | Msa1388770:intron | 20.0% |
| !!! | ACATTAGAAATTTTAAAGTG+TGG | + | tig0021182:45798-45817 | None:intergenic | 20.0% |
| !! | TTTATGGATATATTACAATG+AGG | + | tig0021182:46032-46051 | None:intergenic | 20.0% |
| !!! | AATTGATTCATTGTGATATT+TGG | - | tig0021182:46276-46295 | Msa1388770:intron | 20.0% |
| !!! | ATTGATTCATTGTGATATTT+GGG | - | tig0021182:46277-46296 | Msa1388770:intron | 20.0% |
| !!! | TCTAATCTTTTCAAAGTTTT+TGG | - | tig0021182:46755-46774 | Msa1388770:intron | 20.0% |
| !! | ACCTTTCAAATTAAAGATTT+GGG | - | tig0021182:47985-48004 | Msa1388770:intron | 20.0% |
| !! | TAAAACTTTGTTAATGTATG+GGG | + | tig0021182:49365-49384 | None:intergenic | 20.0% |
| !!! | ACATTAACAAAGTTTTATAC+CGG | - | tig0021182:49368-49387 | Msa1388770:CDS | 20.0% |
| !!! | TAGTGTATTTTGATTTGATT+TGG | - | tig0021182:49425-49444 | Msa1388770:CDS | 20.0% |
| !!! | AGTGTATTTTGATTTGATTT+GGG | - | tig0021182:49426-49445 | Msa1388770:CDS | 20.0% |
| ! | TCTTCCATTGTTTCATAATA+TGG | - | tig0021182:44264-44283 | Msa1388770:intron | 25.0% |
| ! | GATACCATATTATGAAACAA+TGG | + | tig0021182:44271-44290 | None:intergenic | 25.0% |
| ! | TCCATTACCTTCAATTAATA+AGG | - | tig0021182:45113-45132 | Msa1388770:intron | 25.0% |
| ! | ACCTTATTAATTGAAGGTAA+TGG | + | tig0021182:45117-45136 | None:intergenic | 25.0% |
| ! | GAATACACCTTATTAATTGA+AGG | + | tig0021182:45123-45142 | None:intergenic | 25.0% |
| !!! | ATGGTAACAATGGTTTTATT+TGG | + | tig0021182:45747-45766 | None:intergenic | 25.0% |
| !! | ATTCAAGCTACTAATGATTT+TGG | + | tig0021182:45862-45881 | None:intergenic | 25.0% |
| ! | TGCATTTATCAGGTAAAAAT+TGG | + | tig0021182:45893-45912 | None:intergenic | 25.0% |
| !! | AGGTTGAACATCTTTATTTA+TGG | + | tig0021182:46048-46067 | None:intergenic | 25.0% |
| !!! | GTAAAAGTACTAGAAACTAT+AGG | + | tig0021182:46068-46087 | None:intergenic | 25.0% |
| ! | CATATTTGACAATCTTTGAT+TGG | + | tig0021182:46138-46157 | None:intergenic | 25.0% |
| ! | TATTATCAACACAGATAGAA+GGG | + | tig0021182:46172-46191 | None:intergenic | 25.0% |
| ! | TTATTATCAACACAGATAGA+AGG | + | tig0021182:46173-46192 | None:intergenic | 25.0% |
| ! | TGAGATAAACTATGAGAAAA+AGG | + | tig0021182:46239-46258 | None:intergenic | 25.0% |
| ! | TTGATTCATTGTGATATTTG+GGG | - | tig0021182:46278-46297 | Msa1388770:intron | 25.0% |
| !! | CAATAGTGATAAAGTACTTA+TGG | + | tig0021182:46331-46350 | None:intergenic | 25.0% |
| !!! | TTATCACTTCTAAGGATTTT+AGG | + | tig0021182:46464-46483 | None:intergenic | 25.0% |
| ! | AAAATCCTTAGAAGTGATAA+TGG | - | tig0021182:46464-46483 | Msa1388770:intron | 25.0% |
| ! | ATGAAGGTAAATCAAATTCA+GGG | + | tig0021182:46490-46509 | None:intergenic | 25.0% |
| ! | AATGAAGGTAAATCAAATTC+AGG | + | tig0021182:46491-46510 | None:intergenic | 25.0% |
| !!! | CCTTTAGAGTTATAAAATGA+AGG | + | tig0021182:46506-46525 | None:intergenic | 25.0% |
| !! | CCTTCATTTTATAACTCTAA+AGG | - | tig0021182:46503-46522 | Msa1388770:intron | 25.0% |
| !! | CCAATAACAATTTGGTAATT+TGG | + | tig0021182:46633-46652 | None:intergenic | 25.0% |
| ! | CCAAATTACCAAATTGTTAT+TGG | - | tig0021182:46630-46649 | Msa1388770:intron | 25.0% |
| ! | GAATCATGTAAAACATGATA+GGG | + | tig0021182:46725-46744 | None:intergenic | 25.0% |
| ! | AGAATCATGTAAAACATGAT+AGG | + | tig0021182:46726-46745 | None:intergenic | 25.0% |
| !! | ACTTTGAAAAGATTAGAATC+AGG | + | tig0021182:46752-46771 | None:intergenic | 25.0% |
| !!! | ATATTTTTAGGCTATAAACC+TGG | - | tig0021182:46845-46864 | Msa1388770:intron | 25.0% |
| ! | TTACAAAGGTTATGTTCTTA+TGG | - | tig0021182:46868-46887 | Msa1388770:intron | 25.0% |
| ! | TTCATGAAAAGTAACATTTC+TGG | + | tig0021182:46921-46940 | None:intergenic | 25.0% |
| ! | TGTAATCTTGTAAATAAGCA+GGG | + | tig0021182:47192-47211 | None:intergenic | 25.0% |
| ! | ATGTAATCTTGTAAATAAGC+AGG | + | tig0021182:47193-47212 | None:intergenic | 25.0% |
| ! | AATAATCTAAGCCTTCAATT+TGG | + | tig0021182:47552-47571 | None:intergenic | 25.0% |
| !! | TGAAGTGGATTTAAGAAAAA+GGG | + | tig0021182:47869-47888 | None:intergenic | 25.0% |
| !! | ATGAAGTGGATTTAAGAAAA+AGG | + | tig0021182:47870-47889 | None:intergenic | 25.0% |
| ! | AATAGTAAATGAAGATGAAG+TGG | + | tig0021182:47884-47903 | None:intergenic | 25.0% |
| !! | ATCTTCATTTACTATTTTGC+TGG | - | tig0021182:47888-47907 | Msa1388770:intron | 25.0% |
| ! | CACCTTTCAAATTAAAGATT+TGG | - | tig0021182:47984-48003 | Msa1388770:intron | 25.0% |
| ! | TTAGATTTACTTGAAGATTC+AGG | - | tig0021182:48084-48103 | Msa1388770:intron | 25.0% |
| !! | TTTTATATCTTAATACCACC+AGG | - | tig0021182:48220-48239 | Msa1388770:intron | 25.0% |
| ! | TAATTCTTAAGGAAGAAATG+AGG | - | tig0021182:49078-49097 | Msa1388770:intron | 25.0% |
| ! | AATTCTTAAGGAAGAAATGA+GGG | - | tig0021182:49079-49098 | Msa1388770:intron | 25.0% |
| ! | AAATGAGGGTAAAGAAAAAA+GGG | - | tig0021182:49093-49112 | Msa1388770:intron | 25.0% |
| !! | TGATAAGGATAATGATAATG+TGG | - | tig0021182:49181-49200 | Msa1388770:CDS | 25.0% |
| ! | AGGAAGAAGATAAAACATTA+TGG | - | tig0021182:49245-49264 | Msa1388770:CDS | 25.0% |
| !! | AAGTTTTTCACACAGAAAAT+GGG | + | tig0021182:49341-49360 | None:intergenic | 25.0% |
| !! | AAAGTTTTTCACACAGAAAA+TGG | + | tig0021182:49342-49361 | None:intergenic | 25.0% |
| !! | CTCATGAATAATGGAAGTTT+TGG | + | tig0021182:43779-43798 | None:intergenic | 30.0% |
| AATGTTACAAGATCAGTACA+TGG | + | tig0021182:43908-43927 | None:intergenic | 30.0% | |
| TTTGTATCAATGAACAACCT+TGG | + | tig0021182:43968-43987 | None:intergenic | 30.0% | |
| ! | TCACAACAATCCTTTTTGTA+GGG | + | tig0021182:44022-44041 | None:intergenic | 30.0% |
| ! | ATCACAACAATCCTTTTTGT+AGG | + | tig0021182:44023-44042 | None:intergenic | 30.0% |
| !!! | ATTCCTTTGGTTTTGAAAGT+GGG | - | tig0021182:44041-44060 | Msa1388770:intron | 30.0% |
| AGGATCGCAAGAAAAAAAAA+CGG | + | tig0021182:44328-44347 | None:intergenic | 30.0% | |
| AAACAAGAAGAAAAACGGTT+AGG | + | tig0021182:44348-44367 | None:intergenic | 30.0% | |
| GGAAGAAACAAGAAGAAAAA+CGG | + | tig0021182:44353-44372 | None:intergenic | 30.0% | |
| TCAAATATGCAGAAAAACAG+AGG | + | tig0021182:44455-44474 | None:intergenic | 30.0% | |
| ! | AAGCTTTTCATCTTCAACAA+TGG | - | tig0021182:44474-44493 | Msa1388770:intron | 30.0% |
| ACTAAAGTTTGAGCAATTTG+TGG | + | tig0021182:44766-44785 | None:intergenic | 30.0% | |
| ! | ATTGTTGATAGAAGAACGTA+AGG | + | tig0021182:44866-44885 | None:intergenic | 30.0% |
| ! | TCTATCAACAATTTGAAGCA+AGG | - | tig0021182:44874-44893 | Msa1388770:intron | 30.0% |
| TCACTGAAATGAAAACTCTA+TGG | - | tig0021182:44920-44939 | Msa1388770:intron | 30.0% | |
| CACTGAAATGAAAACTCTAT+GGG | - | tig0021182:44921-44940 | Msa1388770:intron | 30.0% | |
| ! | CAAGTGATTCAATTTTTGAC+TGG | - | tig0021182:45042-45061 | Msa1388770:intron | 30.0% |
| ! | TCTGATTCTAAGAAGCAATA+TGG | - | tig0021182:45225-45244 | Msa1388770:intron | 30.0% |
| TCTAAGAAGCAATATGGAAA+TGG | - | tig0021182:45231-45250 | Msa1388770:intron | 30.0% | |
| ACAAAACCTAGAGTTATTCT+TGG | + | tig0021182:45274-45293 | None:intergenic | 30.0% | |
| GATTGGACTTATATGAATTG+GGG | + | tig0021182:45353-45372 | None:intergenic | 30.0% | |
| GGATTGGACTTATATGAATT+GGG | + | tig0021182:45354-45373 | None:intergenic | 30.0% | |
| AGGATTGGACTTATATGAAT+TGG | + | tig0021182:45355-45374 | None:intergenic | 30.0% | |
| ! | AAAACAGTTGATATACCTGA+AGG | + | tig0021182:45600-45619 | None:intergenic | 30.0% |
| TATCTGATTCATCTCATGAT+TGG | - | tig0021182:45631-45650 | Msa1388770:intron | 30.0% | |
| TTTGGTAAATGAACATGAAC+AGG | + | tig0021182:45729-45748 | None:intergenic | 30.0% | |
| TCTATATTCACCACATTTCA+AGG | - | tig0021182:45818-45837 | Msa1388770:intron | 30.0% | |
| ATCAGATTAACCTTGAAATG+TGG | + | tig0021182:45831-45850 | None:intergenic | 30.0% | |
| ACCTGATAAATGCATTATAC+AGG | - | tig0021182:45899-45918 | Msa1388770:intron | 30.0% | |
| TCCTGTATAATGCATTTATC+AGG | + | tig0021182:45903-45922 | None:intergenic | 30.0% | |
| AATTTGTATAAACCACCATG+AGG | + | tig0021182:45960-45979 | None:intergenic | 30.0% | |
| ATGGTGGTTTATACAAATTG+AGG | - | tig0021182:45961-45980 | Msa1388770:intron | 30.0% | |
| TTAGAAACAGAAGACTGAAA+AGG | + | tig0021182:46005-46024 | None:intergenic | 30.0% | |
| !! | CTATTGTTGATGACTTTAGT+AGG | - | tig0021182:46345-46364 | Msa1388770:intron | 30.0% |
| ! | ATGACTTTAGTAGGTTTGTT+TGG | - | tig0021182:46354-46373 | Msa1388770:intron | 30.0% |
| TTCCTACATTGAGTATATGT+TGG | + | tig0021182:46592-46611 | None:intergenic | 30.0% | |
| GCATATGACCAATAACAATT+TGG | + | tig0021182:46641-46660 | None:intergenic | 30.0% | |
| ! | GCAAGGAAGTCTATATTTTT+AGG | - | tig0021182:46833-46852 | Msa1388770:intron | 30.0% |
| GTAATCTTGTAAATAAGCAG+GGG | + | tig0021182:47191-47210 | None:intergenic | 30.0% | |
| AAAGCAAAACAAGAATGAGA+AGG | + | tig0021182:47295-47314 | None:intergenic | 30.0% | |
| AAGCAAACAAACATGATTGT+TGG | - | tig0021182:47353-47372 | Msa1388770:intron | 30.0% | |
| TGCAATTTACACACTTGATT+GGG | + | tig0021182:47745-47764 | None:intergenic | 30.0% | |
| ! | AAATTGCACAAGTCACTTTA+TGG | - | tig0021182:47757-47776 | Msa1388770:intron | 30.0% |
| ACTTCAGTCTTAATCATCAA+TGG | - | tig0021182:47817-47836 | Msa1388770:intron | 30.0% | |
| AATCATCAATGGTTACAAAC+AGG | - | tig0021182:47828-47847 | Msa1388770:intron | 30.0% | |
| TGGATTTAAGAAAAAGGGAA+TGG | + | tig0021182:47864-47883 | None:intergenic | 30.0% | |
| !! | GCCCAAATCTTTAATTTGAA+AGG | + | tig0021182:47989-48008 | None:intergenic | 30.0% |
| GCATTAAAATGAGTTTGAGT+GGG | + | tig0021182:48294-48313 | None:intergenic | 30.0% | |
| AGCATTAAAATGAGTTTGAG+TGG | + | tig0021182:48295-48314 | None:intergenic | 30.0% | |
| ! | AGAGTGTTAAGATACTTGAA+AGG | - | tig0021182:48321-48340 | Msa1388770:intron | 30.0% |
| ! | TGAAAAGCCTTGTAATTGAA+GGG | + | tig0021182:48385-48404 | None:intergenic | 30.0% |
| GCAATCTATCTCTAAATGTT+TGG | + | tig0021182:48691-48710 | None:intergenic | 30.0% | |
| !! | ACAAAGTATTGAATGGTTGA+GGG | + | tig0021182:48809-48828 | None:intergenic | 30.0% |
| !! | AACAAAGTATTGAATGGTTG+AGG | + | tig0021182:48810-48829 | None:intergenic | 30.0% |
| !! | TTGGACAACAAAGTATTGAA+TGG | + | tig0021182:48816-48835 | None:intergenic | 30.0% |
| GAAATGAGGGTAAAGAAAAA+AGG | - | tig0021182:49092-49111 | Msa1388770:intron | 30.0% | |
| !!! | GTAAAGAAAAAAGGGTGTTT+TGG | - | tig0021182:49101-49120 | Msa1388770:intron | 30.0% |
| !!! | AAAAAGGGTGTTTTGGTAAT+TGG | - | tig0021182:49108-49127 | Msa1388770:intron | 30.0% |
| !! | TTTTGGTAATTGGAGGAAAA+TGG | - | tig0021182:49118-49137 | Msa1388770:intron | 30.0% |
| TTGGAGGAAAATGGATATTA+AGG | - | tig0021182:49127-49146 | Msa1388770:intron | 30.0% | |
| !!! | CATGTTTTTTGATCATCTTC+TGG | - | tig0021182:49158-49177 | Msa1388770:CDS | 30.0% |
| ! | AAGGATAATGATAATGTGGT+TGG | - | tig0021182:49185-49204 | Msa1388770:CDS | 30.0% |
| !! | AACAAAGTTTTATACCGGAA+CGG | - | tig0021182:49373-49392 | Msa1388770:CDS | 30.0% |
| AAGGATTGTTGTGATTCCTT+TGG | - | tig0021182:44028-44047 | Msa1388770:intron | 35.0% | |
| !!! | GATTCCTTTGGTTTTGAAAG+TGG | - | tig0021182:44040-44059 | Msa1388770:intron | 35.0% |
| TTTCCCACTTTCAAAACCAA+AGG | + | tig0021182:44047-44066 | None:intergenic | 35.0% | |
| !!! | GTTTTGAAAGTGGGAAACTT+GGG | - | tig0021182:44050-44069 | Msa1388770:intron | 35.0% |
| CAATAGTGAAGTTACTTGCA+TGG | + | tig0021182:44137-44156 | None:intergenic | 35.0% | |
| GTTTGTGTAGTACAACTCTT+AGG | - | tig0021182:44187-44206 | Msa1388770:intron | 35.0% | |
| CGCAAGAAAAAAAAACGGTT+AGG | + | tig0021182:44323-44342 | None:intergenic | 35.0% | |
| GAAGAACACGAAGAAATCAA+TGG | + | tig0021182:44426-44445 | None:intergenic | 35.0% | |
| TTCTATGTTCATCCTAGTGA+AGG | - | tig0021182:44535-44554 | Msa1388770:intron | 35.0% | |
| TAATTCGAACCAGTAAGAAG+TGG | + | tig0021182:44583-44602 | None:intergenic | 35.0% | |
| AAATCAGCAAGATCAGGAAT+AGG | + | tig0021182:44679-44698 | None:intergenic | 35.0% | |
| !! | AAGGTAATGGATCCAAAAGA+AGG | + | tig0021182:45104-45123 | None:intergenic | 35.0% |
| ! | GTATTCATTGGTTATCCAAG+AGG | - | tig0021182:45137-45156 | Msa1388770:intron | 35.0% |
| ATCCAAGAGGAGAGTAATAA+TGG | - | tig0021182:45150-45169 | Msa1388770:intron | 35.0% | |
| TACCATTATTACTCTCCTCT+TGG | + | tig0021182:45155-45174 | None:intergenic | 35.0% | |
| GGAAATGGAAAATCATTTGC+TGG | - | tig0021182:45246-45265 | Msa1388770:intron | 35.0% | |
| GATAACAAAACTCCACAGTA+TGG | + | tig0021182:45317-45336 | None:intergenic | 35.0% | |
| !!! | GAGTTTTGTTATCAGAAGCA+TGG | - | tig0021182:45324-45343 | Msa1388770:intron | 35.0% |
| ! | AAGCAATATGGTTTGAGGTT+GGG | + | tig0021182:45542-45561 | None:intergenic | 35.0% |
| AGTAGAAGCAATATGGTTTG+AGG | + | tig0021182:45547-45566 | None:intergenic | 35.0% | |
| AATTGGGAGTAGAAGCAATA+TGG | + | tig0021182:45554-45573 | None:intergenic | 35.0% | |
| ! | CATGATTGGTTACTTGATTC+TGG | - | tig0021182:45645-45664 | Msa1388770:intron | 35.0% |
| AGCATGATGTATGGTAACAA+TGG | + | tig0021182:45757-45776 | None:intergenic | 35.0% | |
| ATTGTTACCATACATCATGC+TGG | - | tig0021182:45756-45775 | Msa1388770:intron | 35.0% | |
| GACTGAAAAGGAAAAACTGA+AGG | + | tig0021182:45993-46012 | None:intergenic | 35.0% | |
| ATATTCCTGAAACTGCACTT+TGG | - | tig0021182:46090-46109 | Msa1388770:intron | 35.0% | |
| TGAATAGAAGGAACACTCAA+AGG | + | tig0021182:46305-46324 | None:intergenic | 35.0% | |
| TTGAGTGTTCCTTCTATTCA+TGG | - | tig0021182:46305-46324 | Msa1388770:intron | 35.0% | |
| TACTTATGGCCATGAATAGA+AGG | + | tig0021182:46317-46336 | None:intergenic | 35.0% | |
| TTTGATCAAATCCAAAGCTG+AGG | - | tig0021182:46382-46401 | Msa1388770:intron | 35.0% | |
| !! | CTAAAGGCATTCTTCATCAT+AGG | - | tig0021182:46519-46538 | Msa1388770:intron | 35.0% |
| CACCAACATATACTCAATGT+AGG | - | tig0021182:46587-46606 | Msa1388770:intron | 35.0% | |
| TTTATGATGAAGAAGTGGAG+TGG | + | tig0021182:46699-46718 | None:intergenic | 35.0% | |
| GGAGATTTATGATGAAGAAG+TGG | + | tig0021182:46704-46723 | None:intergenic | 35.0% | |
| AATATAGACTTCCTTGCTCT+AGG | + | tig0021182:46830-46849 | None:intergenic | 35.0% | |
| AGAACATAACCTTTGTAACC+AGG | + | tig0021182:46866-46885 | None:intergenic | 35.0% | |
| TCAACAAAAGGTTGAGATGA+GGG | + | tig0021182:47007-47026 | None:intergenic | 35.0% | |
| ATCAACAAAAGGTTGAGATG+AGG | + | tig0021182:47008-47027 | None:intergenic | 35.0% | |
| GAATCTTCTGGTGTAGAAAT+AGG | + | tig0021182:47061-47080 | None:intergenic | 35.0% | |
| GCAATAATAGGAGAATCAGA+GGG | + | tig0021182:47130-47149 | None:intergenic | 35.0% | |
| AGCAATAATAGGAGAATCAG+AGG | + | tig0021182:47131-47150 | None:intergenic | 35.0% | |
| GCATATATGGAATTGACAGT+AGG | + | tig0021182:47220-47239 | None:intergenic | 35.0% | |
| AGGAGAAGAAGATGCATATA+TGG | + | tig0021182:47233-47252 | None:intergenic | 35.0% | |
| TTTGCTTCAGTGAAGGATTT+AGG | + | tig0021182:47340-47359 | None:intergenic | 35.0% | |
| ATGTTTGTTTGCTTCAGTGA+AGG | + | tig0021182:47347-47366 | None:intergenic | 35.0% | |
| AAAGTGAAACATCATGCTGA+TGG | - | tig0021182:47481-47500 | Msa1388770:intron | 35.0% | |
| TTCAATTTGGTTGTATCCCT+TGG | + | tig0021182:47539-47558 | None:intergenic | 35.0% | |
| AAGGGATACAACCAAATTGA+AGG | - | tig0021182:47538-47557 | Msa1388770:intron | 35.0% | |
| !!! | TTTTGAAACATACTCTCCAG+TGG | - | tig0021182:47570-47589 | Msa1388770:intron | 35.0% |
| !! | CATTGTTCACATCAAGTTGA+TGG | + | tig0021182:47654-47673 | None:intergenic | 35.0% |
| !!! | GTGAACAATGCTTTTTTGCA+TGG | - | tig0021182:47664-47683 | Msa1388770:intron | 35.0% |
| TTTACACACTTGATTGGGAT+TGG | + | tig0021182:47740-47759 | None:intergenic | 35.0% | |
| GTGCAATTTACACACTTGAT+TGG | + | tig0021182:47746-47765 | None:intergenic | 35.0% | |
| !! | TTGATGATGTGATCTTAGCT+GGG | - | tig0021182:47917-47936 | Msa1388770:intron | 35.0% |
| GGCATTCTTAAATACTTCCT+TGG | - | tig0021182:48006-48025 | Msa1388770:intron | 35.0% | |
| AATGAGCAACTTCAATACCA+AGG | + | tig0021182:48026-48045 | None:intergenic | 35.0% | |
| !! | TACTAATAGGCTTTGAATGG+AGG | + | tig0021182:48113-48132 | None:intergenic | 35.0% |
| !! | GTGTACTAATAGGCTTTGAA+TGG | + | tig0021182:48116-48135 | None:intergenic | 35.0% |
| AGCTTAACATTTGGATCAGA+AGG | + | tig0021182:48138-48157 | None:intergenic | 35.0% | |
| TCATTGTGGAGCTTAACATT+TGG | + | tig0021182:48147-48166 | None:intergenic | 35.0% | |
| AAGGTTGTGAATCATCATTG+TGG | + | tig0021182:48161-48180 | None:intergenic | 35.0% | |
| TAAGCAGGAACATCAGAATA+AGG | + | tig0021182:48180-48199 | None:intergenic | 35.0% | |
| TGAGTGATGAATGTGATATC+TGG | + | tig0021182:48246-48265 | None:intergenic | 35.0% | |
| AAAGCTTCCCTTCAATTACA+AGG | - | tig0021182:48375-48394 | Msa1388770:intron | 35.0% | |
| ! | CTGAAAAGCCTTGTAATTGA+AGG | + | tig0021182:48386-48405 | None:intergenic | 35.0% |
| GATACCAGAAGATCTATTTC+TGG | - | tig0021182:48429-48448 | Msa1388770:intron | 35.0% | |
| TGATTGTCACAGTAGATAAC+AGG | + | tig0021182:48624-48643 | None:intergenic | 35.0% | |
| TAGTGAAAAAATCAGCAAGC+TGG | + | tig0021182:48776-48795 | None:intergenic | 35.0% | |
| ! | CAATACTTTGTTGTCCAAGT+TGG | - | tig0021182:48818-48837 | Msa1388770:intron | 35.0% |
| AATGTCTATCATCTCCAACT+TGG | + | tig0021182:48835-48854 | None:intergenic | 35.0% | |
| CAATAGTGAAGTTACTTGCA+TGG | + | tig0021182:44137-44156 | None:intergenic | 35.0% | |
| GTTTGTGTAGTACAACTCTT+AGG | - | tig0021182:44187-44206 | Msa1388770:intron | 35.0% | |
| TTGATCATCTTCTGGTGATA+AGG | - | tig0021182:49166-49185 | Msa1388770:CDS | 35.0% | |
| ! | GATAATGATAATGTGGTTGG+TGG | - | tig0021182:49188-49207 | Msa1388770:CDS | 35.0% |
| ATTTACCCAAACAAGAGACT+TGG | + | tig0021182:49294-49313 | None:intergenic | 35.0% | |
| AAAAATTACTACCTCCGTTC+CGG | + | tig0021182:49390-49409 | None:intergenic | 35.0% | |
| !! | TGATTTGATTTGGGTTATGC+TGG | - | tig0021182:49435-49454 | Msa1388770:CDS | 35.0% |
| GAAGCTTGTGAGGAAGAAAA+TGG | - | tig0021182:43743-43762 | Msa1388770:CDS | 40.0% | |
| ! | GTTTTTGTTCCTGATCTCTC+TGG | + | tig0021182:43821-43840 | None:intergenic | 40.0% |
| ATTGACGCTGTGATATGAAG+CGG | + | tig0021182:43848-43867 | None:intergenic | 40.0% | |
| ATCACAGCGTCAATACCATT+TGG | - | tig0021182:43854-43873 | Msa1388770:intron | 40.0% | |
| AGCGTCAATACCATTTGGTT+GGG | - | tig0021182:43859-43878 | Msa1388770:intron | 40.0% | |
| ACAAGATCAGTACATGGTCT+TGG | + | tig0021182:43902-43921 | None:intergenic | 40.0% | |
| TCCAACACTAGTCAAGTGTT+TGG | - | tig0021182:43934-43953 | Msa1388770:intron | 40.0% | |
| TCCAAACACTTGACTAGTGT+TGG | + | tig0021182:43938-43957 | None:intergenic | 40.0% | |
| GTATCAATGAACAACCTTGG+AGG | + | tig0021182:43965-43984 | None:intergenic | 40.0% | |
| ! | TCCATCACCTACAACAGTTT+TGG | - | tig0021182:43991-44010 | Msa1388770:intron | 40.0% |
| TCCAAAACTGTTGTAGGTGA+TGG | + | tig0021182:43995-44014 | None:intergenic | 40.0% | |
| !!! | TCACCTACAACAGTTTTGGA+TGG | - | tig0021182:43995-44014 | Msa1388770:intron | 40.0% |
| TTTGGATGGACCCTACAAAA+AGG | - | tig0021182:44009-44028 | Msa1388770:intron | 40.0% | |
| !!! | GGTTTTGAAAGTGGGAAACT+TGG | - | tig0021182:44049-44068 | Msa1388770:intron | 40.0% |
| GTAGTTACTCCACTTCTTAC+TGG | - | tig0021182:44571-44590 | Msa1388770:intron | 40.0% | |
| TGATTTGAACCGTGATGCAT+GGG | - | tig0021182:44693-44712 | Msa1388770:intron | 40.0% | |
| ! | GCAATCATCTGGTTTATTCG+TGG | - | tig0021182:44722-44741 | Msa1388770:intron | 40.0% |
| GGAAAAGGACAAGTGCAATT+AGG | + | tig0021182:44973-44992 | None:intergenic | 40.0% | |
| ! | CAAGTCTCAAGTCCTTCTTT+TGG | - | tig0021182:45089-45108 | Msa1388770:intron | 40.0% |
| !! | CTTGAGTCTTCTGAAACAGA+GGG | + | tig0021182:45189-45208 | None:intergenic | 40.0% |
| CTGGTTCCAAGAATAACTCT+AGG | - | tig0021182:45265-45284 | Msa1388770:intron | 40.0% | |
| CAAACGTACAAACCATACTG+TGG | - | tig0021182:45302-45321 | Msa1388770:intron | 40.0% | |
| !! | AGTAGCATTTGCTGTAGGAT+TGG | + | tig0021182:45370-45389 | None:intergenic | 40.0% |
| !! | GCATTAGTAGCATTTGCTGT+AGG | + | tig0021182:45375-45394 | None:intergenic | 40.0% |
| TTGTCAACTGCAGAATTCAC+AGG | + | tig0021182:45423-45442 | None:intergenic | 40.0% | |
| CAATCACATTTGCTTGCTTC+AGG | - | tig0021182:45501-45520 | Msa1388770:intron | 40.0% | |
| ! | AGCAATATGGTTTGAGGTTG+GGG | + | tig0021182:45541-45560 | None:intergenic | 40.0% |
| ! | GAAGCAATATGGTTTGAGGT+TGG | + | tig0021182:45543-45562 | None:intergenic | 40.0% |
| ! | ACAGTTGATATACCTGAAGG+AGG | + | tig0021182:45597-45616 | None:intergenic | 40.0% |
| AACAGTACCAGCATGATGTA+TGG | + | tig0021182:45766-45785 | None:intergenic | 40.0% | |
| TGCACTTTGGCACTTTAGAT+TGG | - | tig0021182:46103-46122 | Msa1388770:intron | 40.0% | |
| GCACTTTGGCACTTTAGATT+GGG | - | tig0021182:46104-46123 | Msa1388770:intron | 40.0% | |
| CACTTTGGCACTTTAGATTG+GGG | - | tig0021182:46105-46124 | Msa1388770:intron | 40.0% | |
| ATGAATAGACACCTCAGCTT+TGG | + | tig0021182:46396-46415 | None:intergenic | 40.0% | |
| ! | TCTACTCTAGCATTTTGCTG+AGG | + | tig0021182:46560-46579 | None:intergenic | 40.0% |
| GGCTATAAACCTGGTTACAA+AGG | - | tig0021182:46854-46873 | Msa1388770:intron | 40.0% | |
| ATCAATGGCAGAAGTAGAAG+TGG | + | tig0021182:46966-46985 | None:intergenic | 40.0% | |
| GATATAGTGCCAGGTATCAA+TGG | + | tig0021182:46981-47000 | None:intergenic | 40.0% | |
| GGTGTAGAAATAGGAGAAGT+GGG | + | tig0021182:47052-47071 | None:intergenic | 40.0% | |
| TGGTGTAGAAATAGGAGAAG+TGG | + | tig0021182:47053-47072 | None:intergenic | 40.0% | |
| !! | AGAAGATTCAGAAGTGTTGG+GGG | + | tig0021182:47104-47123 | None:intergenic | 40.0% |
| !! | CAGAAGATTCAGAAGTGTTG+GGG | + | tig0021182:47105-47124 | None:intergenic | 40.0% |
| !! | GCAGAAGATTCAGAAGTGTT+GGG | + | tig0021182:47106-47125 | None:intergenic | 40.0% |
| ! | AGCAGAAGATTCAGAAGTGT+TGG | + | tig0021182:47107-47126 | None:intergenic | 40.0% |
| ATCTTGTAAATAAGCAGGGG+TGG | + | tig0021182:47188-47207 | None:intergenic | 40.0% | |
| !! | ATTTAGGCTCAAGTTGAGTG+TGG | + | tig0021182:47324-47343 | None:intergenic | 40.0% |
| CTTAATGCCTTGAGTAAGAC+TGG | - | tig0021182:47397-47416 | Msa1388770:intron | 40.0% | |
| CTTGAGTAAGACTGGTACTT+GGG | - | tig0021182:47405-47424 | Msa1388770:intron | 40.0% | |
| !! | TCTGGCTTTATACCTCTCTA+TGG | + | tig0021182:47509-47528 | None:intergenic | 40.0% |
| ! | AGAGAGGTATAAAGCCAGAT+TGG | - | tig0021182:47510-47529 | Msa1388770:intron | 40.0% |
| AGTCAGGATTGTTCTTGCTT+TGG | - | tig0021182:47606-47625 | Msa1388770:intron | 40.0% | |
| CTTTGGCCTCTATGCATAAT+TGG | - | tig0021182:47623-47642 | Msa1388770:intron | 40.0% | |
| GAGATGCCAATTATGCATAG+AGG | + | tig0021182:47632-47651 | None:intergenic | 40.0% | |
| GTTTATATGATTGTCCCTCC+TGG | - | tig0021182:47703-47722 | Msa1388770:intron | 40.0% | |
| ACTTGATTGGGATTGGAATG+TGG | + | tig0021182:47733-47752 | None:intergenic | 40.0% | |
| CAAGCAGGAAATGGTATGAA+AGG | - | tig0021182:47791-47810 | Msa1388770:intron | 40.0% | |
| !! | GTTGATGATGTGATCTTAGC+TGG | - | tig0021182:47916-47935 | Msa1388770:intron | 40.0% |
| GAAGTTGCTCATTCTTCATC+TGG | - | tig0021182:48033-48052 | Msa1388770:intron | 40.0% | |
| ! | GGATCAGAAGGTGTACTAAT+AGG | + | tig0021182:48126-48145 | None:intergenic | 40.0% |
| ATTCTGATGTTCCTGCTTAC+AGG | - | tig0021182:48181-48200 | Msa1388770:intron | 40.0% | |
| AGATACTTGAAAGGATCTCC+AGG | - | tig0021182:48330-48349 | Msa1388770:intron | 40.0% | |
| ! | ATTGAAGGGAAGCTTTTCGA+GGG | + | tig0021182:48371-48390 | None:intergenic | 40.0% |
| ! | AATTGAAGGGAAGCTTTTCG+AGG | + | tig0021182:48372-48391 | None:intergenic | 40.0% |
| CTGACCAGAAATAGATCTTC+TGG | + | tig0021182:48436-48455 | None:intergenic | 40.0% | |
| ! | TTCTGGTCAGTGCTTCTTTT+TGG | - | tig0021182:48446-48465 | Msa1388770:intron | 40.0% |
| ! | TCTGGTCAGTGCTTCTTTTT+GGG | - | tig0021182:48447-48466 | Msa1388770:intron | 40.0% |
| ! | TGGGCAAGTCACTTATTTCT+TGG | - | tig0021182:48466-48485 | Msa1388770:intron | 40.0% |
| ! | GCAAGTCACTTATTTCTTGG+AGG | - | tig0021182:48469-48488 | Msa1388770:intron | 40.0% |
| GATCCATTGCAATTCACATG+AGG | + | tig0021182:48559-48578 | None:intergenic | 40.0% | |
| ACAGTAGATAACAGGAGTCT+TGG | + | tig0021182:48616-48635 | None:intergenic | 40.0% | |
| !! | AAAATCAGCAAGCTGGTCTT+TGG | + | tig0021182:48769-48788 | None:intergenic | 40.0% |
| ATTTATCACCCTCCAACTTG+TGG | - | tig0021182:48852-48871 | Msa1388770:intron | 40.0% | |
| TTTATCACCCTCCAACTTGT+GGG | - | tig0021182:48853-48872 | Msa1388770:intron | 40.0% | |
| !!! | AAGGGTGTTTTGGTAATTGG+AGG | - | tig0021182:49111-49130 | Msa1388770:intron | 40.0% |
| !! | AATGATAATGTGGTTGGTGG+TGG | - | tig0021182:49191-49210 | Msa1388770:CDS | 40.0% |
| ACAAGAGACTTGGCATGAAA+TGG | + | tig0021182:49284-49303 | None:intergenic | 40.0% | |
| TTCATGCCAAGTCTCTTGTT+TGG | - | tig0021182:49285-49304 | Msa1388770:CDS | 40.0% | |
| ! | TCATGCCAAGTCTCTTGTTT+GGG | - | tig0021182:49286-49305 | Msa1388770:CDS | 40.0% |
| TCACACAGAAAATGGGTCAA+GGG | + | tig0021182:49334-49353 | None:intergenic | 40.0% | |
| TTCACACAGAAAATGGGTCA+AGG | + | tig0021182:49335-49354 | None:intergenic | 40.0% | |
| !! | AAAGTTTTATACCGGAACGG+AGG | - | tig0021182:49376-49395 | Msa1388770:CDS | 40.0% |
| GATCTCTCTGGTGAATGCAT+TGG | + | tig0021182:43809-43828 | None:intergenic | 45.0% | |
| ATGCATTCACCAGAGAGATC+AGG | - | tig0021182:43809-43828 | Msa1388770:intron | 45.0% | |
| CAGCGTCAATACCATTTGGT+TGG | - | tig0021182:43858-43877 | Msa1388770:intron | 45.0% | |
| !! | GTACATGGTCTTGGTTTTCC+TGG | + | tig0021182:43893-43912 | None:intergenic | 45.0% |
| ! | AGTGTTTGGAACTTCCTCCA+AGG | - | tig0021182:43948-43967 | Msa1388770:intron | 45.0% |
| GGTCCATCCAAAACTGTTGT+AGG | + | tig0021182:44001-44020 | None:intergenic | 45.0% | |
| CCAGAGAAGATGAATTGCAG+CGG | + | tig0021182:44374-44393 | None:intergenic | 45.0% | |
| ACAGAGTTTGGACCTTCACT+AGG | + | tig0021182:44550-44569 | None:intergenic | 45.0% | |
| TAGTGAAGGTCCAAACTCTG+TGG | - | tig0021182:44549-44568 | Msa1388770:intron | 45.0% | |
| GGAGTAACTACCACAGAGTT+TGG | + | tig0021182:44562-44581 | None:intergenic | 45.0% | |
| CGGTTCAAATCAGCAAGATC+AGG | + | tig0021182:44685-44704 | None:intergenic | 45.0% | |
| ! | CTGATTTGAACCGTGATGCA+TGG | - | tig0021182:44692-44711 | Msa1388770:intron | 45.0% |
| GAGTTCATCCCAAACGTCAA+TGG | + | tig0021182:44803-44822 | None:intergenic | 45.0% | |
| GGACAAGTGCAATTAGGCAT+TGG | + | tig0021182:44967-44986 | None:intergenic | 45.0% | |
| CAGATCTCATAGCTTCACAC+CGG | + | tig0021182:44999-45018 | None:intergenic | 45.0% | |
| !! | GCTTGAGTCTTCTGAAACAG+AGG | + | tig0021182:45190-45209 | None:intergenic | 45.0% |
| GTTGACAATTCTCCTCCTAC+TGG | - | tig0021182:45435-45454 | Msa1388770:intron | 45.0% | |
| ! | GCAATATGGTTTGAGGTTGG+GGG | + | tig0021182:45540-45559 | None:intergenic | 45.0% |
| CCAGAGGAAGAAGGGAAATT+GGG | + | tig0021182:45570-45589 | None:intergenic | 45.0% | |
| ACCAGAGGAAGAAGGGAAAT+TGG | + | tig0021182:45571-45590 | None:intergenic | 45.0% | |
| TACAGGATCTGATTACCCAC+AGG | - | tig0021182:45916-45935 | Msa1388770:intron | 45.0% | |
| CTGATTACCCACAGGATGAT+TGG | - | tig0021182:45924-45943 | Msa1388770:intron | 45.0% | |
| ! | TACCCACAGGATGATTGGTT+TGG | - | tig0021182:45929-45948 | Msa1388770:intron | 45.0% |
| AGCCAAACCAATCATCCTGT+GGG | + | tig0021182:45934-45953 | None:intergenic | 45.0% | |
| !! | ATTGGTTTGGCTGATCCTCA+TGG | - | tig0021182:45942-45961 | Msa1388770:intron | 45.0% |
| AAGTGCCAAAGTGCAGTTTC+AGG | + | tig0021182:46098-46117 | None:intergenic | 45.0% | |
| CAGGGCCATTATCACTTCTA+AGG | + | tig0021182:46472-46491 | None:intergenic | 45.0% | |
| CATCTACCATCCAATCTCAC+AGG | - | tig0021182:46792-46811 | Msa1388770:intron | 45.0% | |
| TTTGGTCCTGTGAGATTGGA+TGG | + | tig0021182:46801-46820 | None:intergenic | 45.0% | |
| GAAGTTTGGTCCTGTGAGAT+TGG | + | tig0021182:46805-46824 | None:intergenic | 45.0% | |
| ! | CCTTGCTCTAGGTTGAAGTT+TGG | + | tig0021182:46819-46838 | None:intergenic | 45.0% |
| CCAAACTTCAACCTAGAGCA+AGG | - | tig0021182:46816-46835 | Msa1388770:intron | 45.0% | |
| ATGGCAGAAGTAGAAGTGGA+AGG | + | tig0021182:46962-46981 | None:intergenic | 45.0% | |
| CTACTTCTGCCATTGATACC+TGG | - | tig0021182:46969-46988 | Msa1388770:intron | 45.0% | |
| GGGTCAGGATCATCAACAAA+AGG | + | tig0021182:47019-47038 | None:intergenic | 45.0% | |
| GAAATAGGAGAAGTGGGAAG+AGG | + | tig0021182:47046-47065 | None:intergenic | 45.0% | |
| ACACCAGAAGATTCACCTCA+TGG | - | tig0021182:47067-47086 | Msa1388770:intron | 45.0% | |
| GAACCATGAGGTGAATCTTC+TGG | + | tig0021182:47073-47092 | None:intergenic | 45.0% | |
| ACAGGTGGAGGAGCAATAAT+AGG | + | tig0021182:47142-47161 | None:intergenic | 45.0% | |
| AGTCTAGTAGAGACTCTGAC+AGG | + | tig0021182:47160-47179 | None:intergenic | 45.0% | |
| CCAAGTACCAGTCTTACTCA+AGG | + | tig0021182:47407-47426 | None:intergenic | 45.0% | |
| CCTTGAGTAAGACTGGTACT+TGG | - | tig0021182:47404-47423 | Msa1388770:intron | 45.0% | |
| TGGGTTTAACATGAGGTGGA+AGG | + | tig0021182:47441-47460 | None:intergenic | 45.0% | |
| CCTATGGGTTTAACATGAGG+TGG | + | tig0021182:47445-47464 | None:intergenic | 45.0% | |
| CCACCTCATGTTAAACCCAT+AGG | - | tig0021182:47442-47461 | Msa1388770:intron | 45.0% | |
| CAGCCTATGGGTTTAACATG+AGG | + | tig0021182:47448-47467 | None:intergenic | 45.0% | |
| ATGTTAAACCCATAGGCTGC+AGG | - | tig0021182:47449-47468 | Msa1388770:intron | 45.0% | |
| ATGCTGATGGTTCCATAGAG+AGG | - | tig0021182:47494-47513 | Msa1388770:intron | 45.0% | |
| ! | TAAAGCCAGATTGGTTGCCA+AGG | - | tig0021182:47519-47538 | Msa1388770:intron | 45.0% |
| ! | AAAGCCAGATTGGTTGCCAA+GGG | - | tig0021182:47520-47539 | Msa1388770:intron | 45.0% |
| AGCAAGAACAATCCTGACTG+TGG | + | tig0021182:47605-47624 | None:intergenic | 45.0% | |
| ! | ATGGATTGAAGCAAGCAAGC+AGG | - | tig0021182:47776-47795 | Msa1388770:intron | 45.0% |
| TGAAGCAAGCAAGCAGGAAA+TGG | - | tig0021182:47782-47801 | Msa1388770:intron | 45.0% | |
| GATCTTAGCTGGGAACTCTT+TGG | - | tig0021182:47927-47946 | Msa1388770:intron | 45.0% | |
| CCAATCAATCTCCTGTAAGC+AGG | + | tig0021182:48195-48214 | None:intergenic | 45.0% | |
| CCTGCTTACAGGAGATTGAT+TGG | - | tig0021182:48192-48211 | Msa1388770:intron | 45.0% | |
| GATGAATGTGATATCTGGCC+TGG | + | tig0021182:48241-48260 | None:intergenic | 45.0% | |
| ! | AAGGCTTTTCAGATGCAGAC+TGG | - | tig0021182:48394-48413 | Msa1388770:intron | 45.0% |
| ! | AGGCTTTTCAGATGCAGACT+GGG | - | tig0021182:48395-48414 | Msa1388770:intron | 45.0% |
| TGTCAGCAAATCCTCTTCTG+AGG | - | tig0021182:48509-48528 | Msa1388770:intron | 45.0% | |
| TCTATACTCAGCCTCAGAAG+AGG | + | tig0021182:48523-48542 | None:intergenic | 45.0% | |
| TGAGGCTGAGTATAGAGCTT+TGG | - | tig0021182:48527-48546 | Msa1388770:intron | 45.0% | |
| CAGCCTCATGTGAATTGCAA+TGG | - | tig0021182:48553-48572 | Msa1388770:intron | 45.0% | |
| GCAGTTTCTCGCGTACAATA+TGG | + | tig0021182:48713-48732 | None:intergenic | 45.0% | |
| TATTGTACGCGAGAAACTGC+AGG | - | tig0021182:48713-48732 | Msa1388770:intron | 45.0% | |
| !! | AGCTGGTCTTTGGAAGAGAT+AGG | + | tig0021182:48759-48778 | None:intergenic | 45.0% |
| TTATCACCCTCCAACTTGTG+GGG | - | tig0021182:48854-48873 | Msa1388770:intron | 45.0% | |
| GTGACAAGAATGTGAAGACG+AGG | - | tig0021182:49225-49244 | Msa1388770:CDS | 45.0% | |
| ACAGAAAATGGGTCAAGGGA+CGG | + | tig0021182:49330-49349 | None:intergenic | 45.0% | |
| GGTGGAGGGCTCATGAATAA+TGG | + | tig0021182:43788-43807 | None:intergenic | 50.0% | |
| ! | CTGGTGAATGCATTGGTGGA+GGG | + | tig0021182:43802-43821 | None:intergenic | 50.0% |
| ! | TCTGGTGAATGCATTGGTGG+AGG | + | tig0021182:43803-43822 | None:intergenic | 50.0% |
| CTCTCTGGTGAATGCATTGG+TGG | + | tig0021182:43806-43825 | None:intergenic | 50.0% | |
| GGCTCTTCTTCCCAACCAAA+TGG | + | tig0021182:43872-43891 | None:intergenic | 50.0% | |
| TTTGGTTGGGAAGAAGAGCC+AGG | - | tig0021182:43872-43891 | Msa1388770:intron | 50.0% | |
| CCGCTGCAATTCATCTTCTC+TGG | - | tig0021182:44371-44390 | Msa1388770:intron | 50.0% | |
| ! | CTGGTTCGAATTACCTCGCA+TGG | - | tig0021182:44590-44609 | Msa1388770:intron | 50.0% |
| AGATCCATGCAACGTGCACT+TGG | - | tig0021182:44616-44635 | Msa1388770:intron | 50.0% | |
| TGAACCGTGATGCATGGGAA+CGG | - | tig0021182:44698-44717 | Msa1388770:intron | 50.0% | |
| ATGGGAACGGTGCAATCATC+TGG | - | tig0021182:44711-44730 | Msa1388770:intron | 50.0% | |
| ATGAGCACGCCATTGACGTT+TGG | - | tig0021182:44791-44810 | Msa1388770:intron | 50.0% | |
| TGAGCACGCCATTGACGTTT+GGG | - | tig0021182:44792-44811 | Msa1388770:intron | 50.0% | |
| ! | GCACTTGTCCTTTTCCATGC+CGG | - | tig0021182:44977-44996 | Msa1388770:intron | 50.0% |
| !! | TCCTCCTACTGGTTTGACTC+AGG | - | tig0021182:45446-45465 | Msa1388770:intron | 50.0% |
| TCCTGAGTCAAACCAGTAGG+AGG | + | tig0021182:45450-45469 | None:intergenic | 50.0% | |
| TGCTCCTGAGTCAAACCAGT+AGG | + | tig0021182:45453-45472 | None:intergenic | 50.0% | |
| CCCAATTTCCCTTCTTCCTC+TGG | - | tig0021182:45567-45586 | Msa1388770:intron | 50.0% | |
| !! | GAGGAGTACCAGAGGAAGAA+GGG | + | tig0021182:45578-45597 | None:intergenic | 50.0% |
| CAGCCAAACCAATCATCCTG+TGG | + | tig0021182:45935-45954 | None:intergenic | 50.0% | |
| GTAGAAGTGGAAGGCTGGTA+AGG | + | tig0021182:46953-46972 | None:intergenic | 50.0% | |
| CAGAAGTAGAAGTGGAAGGC+TGG | + | tig0021182:46958-46977 | None:intergenic | 50.0% | |
| TGAGGGAGTGATATAGTGCC+AGG | + | tig0021182:46990-47009 | None:intergenic | 50.0% | |
| AGGAGAAGTGGGAAGAGGTA+GGG | + | tig0021182:47041-47060 | None:intergenic | 50.0% | |
| TAGGAGAAGTGGGAAGAGGT+AGG | + | tig0021182:47042-47061 | None:intergenic | 50.0% | |
| GGGGAATTGAGTGAACCATG+AGG | + | tig0021182:47085-47104 | None:intergenic | 50.0% | |
| CTAGTAGAGACTCTGACAGG+TGG | + | tig0021182:47157-47176 | None:intergenic | 50.0% | |
| TTAAACCCATAGGCTGCAGG+TGG | - | tig0021182:47452-47471 | Msa1388770:intron | 50.0% | |
| TAAACCCATAGGCTGCAGGT+GGG | - | tig0021182:47453-47472 | Msa1388770:intron | 50.0% | |
| TAAACCCACCTGCAGCCTAT+GGG | + | tig0021182:47460-47479 | None:intergenic | 50.0% | |
| GTATCCCTTGGCAACCAATC+TGG | + | tig0021182:47527-47546 | None:intergenic | 50.0% | |
| ACTGTGGTAAGCTTAGCCAC+TGG | + | tig0021182:47589-47608 | None:intergenic | 50.0% | |
| TGGCTAAGCTTACCACAGTC+AGG | - | tig0021182:47590-47609 | Msa1388770:intron | 50.0% | |
| TGGAATGTGGAACACCAGGA+GGG | + | tig0021182:47720-47739 | None:intergenic | 50.0% | |
| TTGGAATGTGGAACACCAGG+AGG | + | tig0021182:47721-47740 | None:intergenic | 50.0% | |
| GGATTGGAATGTGGAACACC+AGG | + | tig0021182:47724-47743 | None:intergenic | 50.0% | |
| CTTAGCTGGGAACTCTTTGG+AGG | - | tig0021182:47930-47949 | Msa1388770:intron | 50.0% | |
| GAATGTGATATCTGGCCTGG+TGG | + | tig0021182:48238-48257 | None:intergenic | 50.0% | |
| TTGAAAGGATCTCCAGGTCG+TGG | - | tig0021182:48336-48355 | Msa1388770:intron | 50.0% | |
| ! | TTTTCAGATGCAGACTGGGC+AGG | - | tig0021182:48399-48418 | Msa1388770:intron | 50.0% |
| TTGGTGCGCTCATGAAACAC+AGG | + | tig0021182:48672-48691 | None:intergenic | 50.0% | |
| TATCACCCTCCAACTTGTGG+GGG | - | tig0021182:48855-48874 | Msa1388770:intron | 50.0% | |
| ! | ATAGTCCCCCACAAGTTGGA+GGG | + | tig0021182:48863-48882 | None:intergenic | 50.0% |
| ! | AATAGTCCCCCACAAGTTGG+AGG | + | tig0021182:48864-48883 | None:intergenic | 50.0% |
| TGCAATAGTCCCCCACAAGT+TGG | + | tig0021182:48867-48886 | None:intergenic | 50.0% | |
| !! | GTGGTTGGTGGTGGCATTAT+TGG | - | tig0021182:49200-49219 | Msa1388770:CDS | 50.0% |
| AAAATGGGTCAAGGGACGGA+GGG | + | tig0021182:49326-49345 | None:intergenic | 50.0% | |
| GACGCTGTGATATGAAGCGG+TGG | + | tig0021182:43845-43864 | None:intergenic | 55.0% | |
| GCATGGATCTACTCCATGCG+AGG | + | tig0021182:44606-44625 | None:intergenic | 55.0% | |
| TGCACCGTTCCCATGCATCA+CGG | + | tig0021182:44705-44724 | None:intergenic | 55.0% | |
| GCTTCACACCGGCATGGAAA+AGG | + | tig0021182:44988-45007 | None:intergenic | 55.0% | |
| CTCATAGCTTCACACCGGCA+TGG | + | tig0021182:44994-45013 | None:intergenic | 55.0% | |
| ATCTGCACGCGCACATCGTA+TGG | - | tig0021182:45014-45033 | Msa1388770:intron | 55.0% | |
| ! | TGGTTTGAGGTTGGGGGAGA+AGG | + | tig0021182:45534-45553 | None:intergenic | 55.0% |
| !! | GGAGGAGTACCAGAGGAAGA+AGG | + | tig0021182:45579-45598 | None:intergenic | 55.0% |
| TCCTCTGGTACTCCTCCTTC+AGG | - | tig0021182:45582-45601 | Msa1388770:intron | 55.0% | |
| !! | ACCTGAAGGAGGAGTACCAG+AGG | + | tig0021182:45586-45605 | None:intergenic | 55.0% |
| GGTTTGGCTGATCCTCATGG+TGG | - | tig0021182:45945-45964 | Msa1388770:intron | 55.0% | |
| GAGAAGTGGGAAGAGGTAGG+GGG | + | tig0021182:47039-47058 | None:intergenic | 55.0% | |
| GGAGAAGTGGGAAGAGGTAG+GGG | + | tig0021182:47040-47059 | None:intergenic | 55.0% | |
| GTAGAGACTCTGACAGGTGG+AGG | + | tig0021182:47154-47173 | None:intergenic | 55.0% | |
| GTAAACCCACCTGCAGCCTA+TGG | + | tig0021182:47461-47480 | None:intergenic | 55.0% | |
| GGGAAGAAGATACCACGACC+TGG | + | tig0021182:48351-48370 | None:intergenic | 55.0% | |
| GAAAATGGGTCAAGGGACGG+AGG | + | tig0021182:49327-49346 | None:intergenic | 55.0% | |
| TGCACGCGCACATCGTATGG+AGG | - | tig0021182:45017-45036 | Msa1388770:intron | 60.0% | |
| TGAGGTTGGGGGAGAAGGAG+TGG | + | tig0021182:45529-45548 | None:intergenic | 60.0% | |
| ATGCAGACTGGGCAGGTTGC+AGG | - | tig0021182:48406-48425 | Msa1388770:intron | 60.0% | |
| TGCAGACTGGGCAGGTTGCA+GGG | - | tig0021182:48407-48426 | Msa1388770:intron | 60.0% | |
| CGCGCCAAGTGCACGTTGCA+TGG | + | tig0021182:44623-44642 | None:intergenic | 65.0% | |
| GTGGGAAGAGGTAGGGGGTC+AGG | + | tig0021182:47034-47053 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021182 | gene | 43740 | 49474 | 43740 | ID=Msa1388770;Name=Msa1388770 |
| tig0021182 | mRNA | 43740 | 49474 | 43740 | ID=Msa1388770-mRNA-1;Parent=Msa1388770;Name=Msa1388770-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|0|0.5|2|0|121 |
| tig0021182 | exon | 49156 | 49474 | 49156 | ID=Msa1388770-mRNA-1:exon:11320;Parent=Msa1388770-mRNA-1 |
| tig0021182 | exon | 43740 | 43786 | 43740 | ID=Msa1388770-mRNA-1:exon:11319;Parent=Msa1388770-mRNA-1 |
| tig0021182 | CDS | 49156 | 49474 | 49156 | ID=Msa1388770-mRNA-1:cds;Parent=Msa1388770-mRNA-1 |
| tig0021182 | CDS | 43740 | 43786 | 43740 | ID=Msa1388770-mRNA-1:cds;Parent=Msa1388770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
