Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1316540 | RHN39702.1 | 83.770 | 191 | 10 | 3 | 1 | 170 | 1 | 191 | 2.36e-102 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1316540 | A0A396GEA7 | 83.770 | 191 | 10 | 3 | 1 | 170 | 1 | 191 | 1.13e-102 | 305 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa1316540 | 0.834830 | 2.388533e-56 | -8.615850e-47 |
| Msa0006980 | Msa1316540 | 0.832337 | 1.001122e-55 | -8.615850e-47 |
| Msa0029910 | Msa1316540 | 0.806143 | 9.492445e-50 | -8.615850e-47 |
| Msa0109880 | Msa1316540 | 0.800278 | 1.553721e-48 | -8.615850e-47 |
| Msa0641250 | Msa1316540 | 0.806166 | 9.384241e-50 | -8.615850e-47 |
| Msa0641360 | Msa1316540 | 0.807836 | 4.161085e-50 | -8.615850e-47 |
| Msa0669840 | Msa1316540 | 0.829814 | 4.169933e-55 | -8.615850e-47 |
| Msa0725860 | Msa1316540 | 0.811091 | 8.327726e-51 | -8.615850e-47 |
| Msa0739580 | Msa1316540 | 0.815254 | 1.015816e-51 | -8.615850e-47 |
| Msa0782360 | Msa1316540 | 0.813677 | 2.267416e-51 | -8.615850e-47 |
| Msa0124130 | Msa1316540 | 0.850367 | 1.778045e-60 | -8.615850e-47 |
| Msa0149140 | Msa1316540 | 0.826405 | 2.761757e-54 | -8.615850e-47 |
| Msa0203030 | Msa1316540 | 0.803603 | 3.221869e-49 | -8.615850e-47 |
| Msa0212150 | Msa1316540 | 0.816122 | 6.508446e-52 | -8.615850e-47 |
| Msa0219190 | Msa1316540 | 0.816464 | 5.455616e-52 | -8.615850e-47 |
| Msa0221290 | Msa1316540 | 0.809599 | 1.747203e-50 | -8.615850e-47 |
| Msa1228190 | Msa1316540 | 0.822927 | 1.822890e-53 | -8.615850e-47 |
| Msa1305510 | Msa1316540 | 0.851226 | 1.018552e-60 | -8.615850e-47 |
| Msa1316540 | Msa1388770 | 0.861109 | 1.292371e-63 | -8.615850e-47 |
| Msa1316540 | Msa1406780 | 0.810424 | 1.160618e-50 | -8.615850e-47 |
| Msa1316540 | Msa1420060 | 0.806456 | 8.152356e-50 | -8.615850e-47 |
| Msa1316540 | Msa1421550 | 0.815230 | 1.028583e-51 | -8.615850e-47 |
| Msa1316540 | Msa1431850 | 0.819134 | 1.361837e-52 | -8.615850e-47 |
| Msa0373960 | Msa1316540 | 0.805871 | 1.082582e-49 | -8.615850e-47 |
| Msa0392420 | Msa1316540 | 0.819224 | 1.299436e-52 | -8.615850e-47 |
| Msa0392460 | Msa1316540 | 0.810038 | 1.405740e-50 | -8.615850e-47 |
| Msa0392490 | Msa1316540 | 0.805870 | 1.083081e-49 | -8.615850e-47 |
| Msa0406000 | Msa1316540 | 0.829773 | 4.267048e-55 | -8.615850e-47 |
| Msa0415320 | Msa1316540 | 0.806027 | 1.004197e-49 | -8.615850e-47 |
| Msa0451400 | Msa1316540 | 0.847926 | 8.490631e-60 | -8.615850e-47 |
| Msa0999350 | Msa1316540 | 0.804499 | 2.097532e-49 | -8.615850e-47 |
| Msa0999360 | Msa1316540 | 0.804245 | 2.369142e-49 | -8.615850e-47 |
| Msa0999410 | Msa1316540 | 0.801115 | 1.048297e-48 | -8.615850e-47 |
| Msa0252630 | Msa1316540 | 0.811236 | 7.744225e-51 | -8.615850e-47 |
| Msa0252770 | Msa1316540 | 0.801694 | 7.978379e-49 | -8.615850e-47 |
| Msa0289920 | Msa1316540 | 0.804407 | 2.192536e-49 | -8.615850e-47 |
| Msa0298240 | Msa1316540 | 0.803562 | 3.286036e-49 | -8.615850e-47 |
| Msa0306120 | Msa1316540 | 0.814889 | 1.224374e-51 | -8.615850e-47 |
| Msa0323610 | Msa1316540 | 0.804439 | 2.159470e-49 | -8.615850e-47 |
| Msa0329620 | Msa1316540 | 0.818720 | 1.691545e-52 | -8.615850e-47 |
| Msa0351770 | Msa1316540 | 0.803892 | 2.806813e-49 | -8.615850e-47 |
| Msa0359250 | Msa1316540 | 0.828226 | 1.011237e-54 | -8.615850e-47 |
| Msa1127140 | Msa1316540 | 0.809399 | 1.929212e-50 | -8.615850e-47 |
| Msa1166400 | Msa1316540 | 0.800766 | 1.235673e-48 | -8.615850e-47 |
| Msa1176580 | Msa1316540 | 0.850570 | 1.558661e-60 | -8.615850e-47 |
| Msa1200440 | Msa1316540 | 0.805409 | 1.353597e-49 | -8.615850e-47 |
| Msa1201110 | Msa1316540 | 0.806244 | 9.039194e-50 | -8.615850e-47 |
| Msa1201160 | Msa1316540 | 0.802362 | 5.814761e-49 | -8.615850e-47 |
| Msa0487570 | Msa1316540 | 0.823751 | 1.169925e-53 | -8.615850e-47 |
| Msa0487630 | Msa1316540 | 0.817006 | 4.123587e-52 | -8.615850e-47 |
| Msa0492190 | Msa1316540 | 0.827539 | 1.479447e-54 | -8.615850e-47 |
| Msa0537920 | Msa1316540 | 0.814568 | 1.442217e-51 | -8.615850e-47 |
| Msa0594090 | Msa1316540 | 0.815946 | 7.122624e-52 | -8.615850e-47 |
| Msa0860280 | Msa1316540 | 0.813670 | 2.275968e-51 | -8.615850e-47 |
| Msa0867350 | Msa1316540 | 0.830403 | 2.995134e-55 | -8.615850e-47 |
| Msa0898730 | Msa1316540 | 0.826878 | 2.129798e-54 | -8.615850e-47 |
| Msa0941820 | Msa1316540 | 0.827087 | 1.898361e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1316540 | MtrunA17_Chr8g0346691 | 83.770 | 191 | 10 | 3 | 1 | 170 | 1 | 191 | 2.17e-106 | 305 |
| Msa1316540 | MtrunA17_Chr7g0233401 | 66.102 | 59 | 19 | 1 | 171 | 229 | 53 | 110 | 9.73e-21 | 84.7 |
| Msa1316540 | MtrunA17_Chr7g0275851 | 38.788 | 165 | 63 | 9 | 4 | 138 | 79 | 235 | 2.21e-20 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 61 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCATTAAAGTTTATCATTC+TGG | 0.197912 | 8_4:+16992969 | None:intergenic |
| GTGGTTGGTGGTGGCATTAT+TGG | 0.232077 | 8_4:-16995510 | Msa1316540:CDS |
| TTGGAGGAAAATGGATATTA+AGG | 0.240978 | 8_4:-16995583 | Msa1316540:intron |
| TCCATCACCTACAACAGTTT+TGG | 0.286053 | 8_4:-16995718 | Msa1316540:CDS |
| CTCATGAATAATGGAAGTTT+TGG | 0.308636 | 8_4:+16995933 | None:intergenic |
| TTCATGCCAAGTCTCTTGTT+TGG | 0.319122 | 8_4:-16995425 | Msa1316540:CDS |
| TTTGGATGGACCCTACAAAA+AGG | 0.345193 | 8_4:-16995700 | Msa1316540:CDS |
| TCATGCCAAGTCTCTTGTTT+GGG | 0.361967 | 8_4:-16995424 | Msa1316540:intron |
| ACTTGGGAGTTTGATTCTTA+AGG | 0.363896 | 8_4:-16995643 | Msa1316540:CDS |
| ATGAAGAGATGGGTGATTAC+CGG | 0.380961 | 8_4:-16993151 | Msa1316540:CDS |
| CTGGACCGGGTGGAGGATAA+TGG | 0.386160 | 8_4:+16992988 | None:intergenic |
| ACAAGAGACTTGGCATGAAA+TGG | 0.388152 | 8_4:+16995429 | None:intergenic |
| GAAGCTTGTGAGGAAGAAAA+TGG | 0.395638 | 8_4:-16995966 | Msa1316540:CDS |
| AAGGATTGTTGTGATTCCTT+TGG | 0.404092 | 8_4:-16995681 | Msa1316540:CDS |
| AGGAAGAAGATAAAACATTA+TGG | 0.406591 | 8_4:-16995465 | Msa1316540:CDS |
| TGATGATTGGCGTCGAAGAA+TGG | 0.418037 | 8_4:-16993090 | Msa1316540:CDS |
| GGTGGAGGGCTCATGAATAA+TGG | 0.418821 | 8_4:+16995924 | None:intergenic |
| ATCACAGCATCAATACCATT+TGG | 0.441782 | 8_4:-16995855 | Msa1316540:CDS |
| ACAAGATCAGTACATGGTCT+TGG | 0.444506 | 8_4:+16995810 | None:intergenic |
| TCCAAACACTTGACTAGTGT+TGG | 0.454319 | 8_4:+16995774 | None:intergenic |
| CTCTCTGGTGAATGCATTGG+TGG | 0.455474 | 8_4:+16995906 | None:intergenic |
| AGCATCAATACCATTTGGTT+GGG | 0.456795 | 8_4:-16995850 | Msa1316540:CDS |
| GGTCCATCCAAAACTGTTGT+AGG | 0.469058 | 8_4:+16995711 | None:intergenic |
| TGAAAGACGACGATGATGAT+TGG | 0.469552 | 8_4:-16993103 | Msa1316540:CDS |
| TAAAGTTTATCATTCTGGAC+CGG | 0.470455 | 8_4:+16992974 | None:intergenic |
| GAATGGAGGCGAAGGCTGAC+AGG | 0.493199 | 8_4:-16993073 | Msa1316540:CDS |
| CAGCATCAATACCATTTGGT+TGG | 0.495412 | 8_4:-16995851 | Msa1316540:CDS |
| TTTGGTTGGGAAGAAGAGCC+AGG | 0.497915 | 8_4:-16995837 | Msa1316540:CDS |
| GGCTCTTCTTCCCAACCAAA+TGG | 0.498578 | 8_4:+16995840 | None:intergenic |
| TCTGGTGAATGCATTGGTGG+AGG | 0.503654 | 8_4:+16995909 | None:intergenic |
| TCCAAAACTGTTGTAGGTGA+TGG | 0.506928 | 8_4:+16995717 | None:intergenic |
| TATCATTCTGGACCGGGTGG+AGG | 0.513385 | 8_4:+16992981 | None:intergenic |
| GATTCTTAAGGAAGAAATGA+GGG | 0.514201 | 8_4:-16995631 | Msa1316540:CDS |
| GATCTCTCTGGTGAATGCAT+TGG | 0.516177 | 8_4:+16995903 | None:intergenic |
| TGAAGAGATGGGTGATTACC+GGG | 0.519438 | 8_4:-16993150 | Msa1316540:CDS |
| GGCTGGCAGAGATGAAGAGA+TGG | 0.522040 | 8_4:-16993162 | Msa1316540:CDS |
| GAGGAGCAACAACCTGCGAC+TGG | 0.522879 | 8_4:-16993128 | Msa1316540:CDS |
| TCGCAGGTTGTTGCTCCTCC+CGG | 0.527228 | 8_4:+16993132 | None:intergenic |
| CTGGTGAATGCATTGGTGGA+GGG | 0.527666 | 8_4:+16995910 | None:intergenic |
| TCGTCTTTCATTCCAGTCGC+AGG | 0.528542 | 8_4:+16993116 | None:intergenic |
| TGATTCTTAAGGAAGAAATG+AGG | 0.535606 | 8_4:-16995632 | Msa1316540:CDS |
| TTTCCCACTTTCAAAACCAA+AGG | 0.551891 | 8_4:+16995665 | None:intergenic |
| ATGCATTCACCAGAGAGATC+AGG | 0.552291 | 8_4:-16995900 | Msa1316540:CDS |
| AGTGAAAATGGAAGCTTGTG+AGG | 0.556127 | 8_4:-16995976 | None:intergenic |
| AATGATAATGTGGTTGGTGG+TGG | 0.559273 | 8_4:-16995519 | Msa1316540:CDS |
| ATTTACCCAAACAAGAGACT+TGG | 0.560482 | 8_4:+16995419 | None:intergenic |
| GATAATGATAATGTGGTTGG+TGG | 0.575718 | 8_4:-16995522 | Msa1316540:CDS |
| AAAGTTTATCATTCTGGACC+GGG | 0.591125 | 8_4:+16992975 | None:intergenic |
| GCGTCGAAGAATGGAGGCGA+AGG | 0.594977 | 8_4:-16993081 | Msa1316540:CDS |
| AAGGATAATGATAATGTGGT+TGG | 0.603829 | 8_4:-16995525 | Msa1316540:CDS |
| GCTGGCAGAGATGAAGAGAT+GGG | 0.610499 | 8_4:-16993161 | Msa1316540:CDS |
| AACTTCCATTATCCTCCACC+CGG | 0.630650 | 8_4:-16992993 | Msa1316540:CDS |
| GGCTGACAGGACGTATGATG+AGG | 0.635222 | 8_4:-16993060 | Msa1316540:CDS |
| TGATAAGGATAATGATAATG+TGG | 0.637344 | 8_4:-16995529 | Msa1316540:intron |
| TGATTGGCGTCGAAGAATGG+AGG | 0.648326 | 8_4:-16993087 | Msa1316540:CDS |
| GTTTATCATTCTGGACCGGG+TGG | 0.658479 | 8_4:+16992978 | None:intergenic |
| ATTGATGCTGTGATATGAAG+TGG | 0.663709 | 8_4:+16995864 | None:intergenic |
| AATGTTACAAGATCAGTACA+TGG | 0.674281 | 8_4:+16995804 | None:intergenic |
| GTGACAAGAATGTGAAGACG+AGG | 0.687739 | 8_4:-16995485 | Msa1316540:CDS |
| GATGCTGTGATATGAAGTGG+TGG | 0.702825 | 8_4:+16995867 | None:intergenic |
| AGAGATGGGTGATTACCGGG+AGG | 0.749155 | 8_4:-16993147 | Msa1316540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGTAAATATAATTATTG+TGG | - | chr8_4:16993844-16993863 | Msa1316540:intron | 10.0% |
| !! | TAAATAAAATGATTTATCTT+AGG | + | chr8_4:16994072-16994091 | None:intergenic | 10.0% |
| !!! | AAATGTTTTTTTATGATATA+TGG | - | chr8_4:16995544-16995563 | Msa1316540:intron | 10.0% |
| !! | TTGTTATAGAAATTTCTATT+TGG | - | chr8_4:16993692-16993711 | Msa1316540:intron | 15.0% |
| !!! | ATAGTTGATTTTGATATTTT+TGG | - | chr8_4:16993909-16993928 | Msa1316540:intron | 15.0% |
| !!! | AATACCCTTATTTTATTTTT+TGG | - | chr8_4:16994421-16994440 | Msa1316540:intron | 15.0% |
| !!! | TTTTTTCATCCAAAAAATAA+TGG | - | chr8_4:16994576-16994595 | Msa1316540:intron | 15.0% |
| !!! | TATACAATTGAAAAAGTATA+AGG | - | chr8_4:16994605-16994624 | Msa1316540:intron | 15.0% |
| !! | TAGTCTTTGTAAAAAAAAAA+AGG | - | chr8_4:16994906-16994925 | Msa1316540:intron | 15.0% |
| !! | ATTATTTATTCTTTCAGTTA+TGG | + | chr8_4:16995617-16995636 | None:intergenic | 15.0% |
| !!! | TAGTGTATTTTGATTTGATT+TGG | - | chr8_4:16993605-16993624 | Msa1316540:intron | 20.0% |
| !!! | AGTGTATTTTGATTTGATTT+GGG | - | chr8_4:16993606-16993625 | Msa1316540:intron | 20.0% |
| !! | ATATCAAAATCAACTATACT+TGG | + | chr8_4:16993906-16993925 | None:intergenic | 20.0% |
| !! | TTAAGCGTTAAAATCATATT+TGG | + | chr8_4:16994008-16994027 | None:intergenic | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | + | chr8_4:16994249-16994268 | None:intergenic | 20.0% |
| !! | AAACATCAAATAAAAAGGAA+TGG | + | chr8_4:16994731-16994750 | None:intergenic | 20.0% |
| !! | AGCTAAAACATCAAATAAAA+AGG | + | chr8_4:16994726-16994745 | None:intergenic | 20.0% |
| !! | AATGAAAATAGTTGTAGATT+TGG | - | chr8_4:16994393-16994412 | Msa1316540:intron | 20.0% |
| !!! | ATTTGATGTTTTAGAATTGT+TGG | + | chr8_4:16994686-16994705 | None:intergenic | 20.0% |
| !! | AGCTAAAACATCAAATAAAA+AGG | - | chr8_4:16994726-16994745 | Msa1316540:intron | 20.0% |
| !! | AAACATCAAATAAAAAGGAA+TGG | - | chr8_4:16994731-16994750 | Msa1316540:intron | 20.0% |
| !! | AAAGTGGAATATATTGTATT+AGG | + | chr8_4:16994792-16994811 | None:intergenic | 20.0% |
| !!! | AAGAAAAGTGTATAAATGAA+GGG | + | chr8_4:16994816-16994835 | None:intergenic | 20.0% |
| !!! | TAAGAAAAGTGTATAAATGA+AGG | + | chr8_4:16994817-16994836 | None:intergenic | 20.0% |
| !! | AGGAAGAATAATAATAATGT+TGG | - | chr8_4:16994926-16994945 | Msa1316540:intron | 20.0% |
| !! | GGAAGAATAATAATAATGTT+GGG | - | chr8_4:16994927-16994946 | Msa1316540:intron | 20.0% |
| !!! | AGTGATTTTTTCTAAAATGT+AGG | - | chr8_4:16994967-16994986 | Msa1316540:intron | 20.0% |
| !!! | GTGATTTTTTCTAAAATGTA+GGG | - | chr8_4:16994968-16994987 | Msa1316540:intron | 20.0% |
| !!! | TAGATTCATTTTCAACATAA+AGG | - | chr8_4:16995494-16995513 | Msa1316540:CDS | 20.0% |
| !!! | TGTATTTTTGAGTTAGTTTT+TGG | - | chr8_4:16995636-16995655 | Msa1316540:CDS | 20.0% |
| !! | TTTATATGGATTTAGATTCA+CGG | - | chr8_4:16995753-16995772 | Msa1316540:intron | 20.0% |
| ! | AAATGAGGGTAAAGAAAAAA+GGG | - | chr8_4:16993335-16993354 | Msa1316540:intron | 25.0% |
| !! | TGATAAGGATAATGATAATG+TGG | - | chr8_4:16993423-16993442 | Msa1316540:intron | 25.0% |
| ! | AGGAAGAAGATAAAACATTA+TGG | - | chr8_4:16993487-16993506 | Msa1316540:intron | 25.0% |
| !! | AAATTTCTATTTGGTTCATG+TGG | - | chr8_4:16993701-16993720 | Msa1316540:intron | 25.0% |
| !! | AATTTCTATTTGGTTCATGT+GGG | - | chr8_4:16993702-16993721 | Msa1316540:intron | 25.0% |
| !!! | TGAATGTTAAGTTGAATAGT+TGG | - | chr8_4:16993759-16993778 | Msa1316540:intron | 25.0% |
| !! | ATTTCACTTAACTAGTTTAC+TGG | - | chr8_4:16993807-16993826 | Msa1316540:intron | 25.0% |
| !! | CTTTTGTTAGTAAATCCAAA+TGG | + | chr8_4:16994134-16994153 | None:intergenic | 25.0% |
| ! | GTAGTACATATTTGGATAAT+TGG | + | chr8_4:16994203-16994222 | None:intergenic | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | + | chr8_4:16994250-16994269 | None:intergenic | 25.0% |
| !!! | TGAAATGAGTCAGTTATTTT+GGG | + | chr8_4:16994271-16994290 | None:intergenic | 25.0% |
| !! | TTGAAATGAGTCAGTTATTT+TGG | + | chr8_4:16994272-16994291 | None:intergenic | 25.0% |
| ! | ATCAAATAAAAAGGAATGGA+GGG | + | chr8_4:16994735-16994754 | None:intergenic | 25.0% |
| ! | GCAGCCAAAAAATAAAATAA+GGG | + | chr8_4:16994428-16994447 | None:intergenic | 25.0% |
| !!! | ATTTTGAGAAGAAAAAAGCA+AGG | + | chr8_4:16994461-16994480 | None:intergenic | 25.0% |
| ! | TCCAAATCTTCTTAAATGAA+CGG | - | chr8_4:16994481-16994500 | Msa1316540:intron | 25.0% |
| ! | TTTCATCCAAAAAATAATGG+TGG | - | chr8_4:16994579-16994598 | Msa1316540:intron | 25.0% |
| ! | TTCATCCAAAAAATAATGGT+GGG | - | chr8_4:16994580-16994599 | Msa1316540:intron | 25.0% |
| !!! | TGACACTTTTAAAAAGTGAA+CGG | - | chr8_4:16994628-16994647 | Msa1316540:intron | 25.0% |
| ! | ATCAAATAAAAAGGAATGGA+GGG | - | chr8_4:16994735-16994754 | Msa1316540:intron | 25.0% |
| !! | AGAAAAGTGTATAAATGAAG+GGG | + | chr8_4:16994815-16994834 | None:intergenic | 25.0% |
| ! | TTACATTAAAATATTCCAGC+AGG | + | chr8_4:16995112-16995131 | None:intergenic | 25.0% |
| !!! | ACATGTTTCAATTTTAGCAT+GGG | + | chr8_4:16995223-16995242 | None:intergenic | 25.0% |
| !!! | TACATGTTTCAATTTTAGCA+TGG | + | chr8_4:16995224-16995243 | None:intergenic | 25.0% |
| !! | ATGTTGAACAATTTTGTTGA+TGG | + | chr8_4:16995422-16995441 | None:intergenic | 25.0% |
| ! | TTATATGGATTTAGATTCAC+GGG | - | chr8_4:16995754-16995773 | Msa1316540:intron | 25.0% |
| !! | CTCATGAATAATGGAAGTTT+TGG | + | chr8_4:16993022-16993041 | None:intergenic | 30.0% |
| AATGTTACAAGATCAGTACA+TGG | + | chr8_4:16993151-16993170 | None:intergenic | 30.0% | |
| TTTGTATCAATGAACAACCT+TGG | + | chr8_4:16993211-16993230 | None:intergenic | 30.0% | |
| ! | TCACAACAATCCTTTTTGTA+GGG | + | chr8_4:16993265-16993284 | None:intergenic | 30.0% |
| ! | ATCACAACAATCCTTTTTGT+AGG | + | chr8_4:16993266-16993285 | None:intergenic | 30.0% |
| !!! | ATTCCTTTGGTTTTGAAAGT+GGG | - | chr8_4:16993284-16993303 | Msa1316540:intron | 30.0% |
| TGATTCTTAAGGAAGAAATG+AGG | - | chr8_4:16993320-16993339 | Msa1316540:intron | 30.0% | |
| GATTCTTAAGGAAGAAATGA+GGG | - | chr8_4:16993321-16993340 | Msa1316540:intron | 30.0% | |
| GAAATGAGGGTAAAGAAAAA+AGG | - | chr8_4:16993334-16993353 | Msa1316540:intron | 30.0% | |
| !!! | GTAAAGAAAAAAGGGTGTTT+TGG | - | chr8_4:16993343-16993362 | Msa1316540:intron | 30.0% |
| !!! | AAAAAGGGTGTTTTGGTAAT+TGG | - | chr8_4:16993350-16993369 | Msa1316540:intron | 30.0% |
| !! | TTTTGGTAATTGGAGGAAAA+TGG | - | chr8_4:16993360-16993379 | Msa1316540:intron | 30.0% |
| TTGGAGGAAAATGGATATTA+AGG | - | chr8_4:16993369-16993388 | Msa1316540:intron | 30.0% | |
| !!! | CATGTTTTTTGATCATCTTC+TGG | - | chr8_4:16993400-16993419 | Msa1316540:intron | 30.0% |
| ! | AAGGATAATGATAATGTGGT+TGG | - | chr8_4:16993427-16993446 | Msa1316540:intron | 30.0% |
| GTTATTTAGATTAAACCCTG+TGG | - | chr8_4:16993781-16993800 | Msa1316540:intron | 30.0% | |
| AGCGTTAAAATCATATTTGG+TGG | + | chr8_4:16994005-16994024 | None:intergenic | 30.0% | |
| TTCATGAAATATGCACCATT+TGG | - | chr8_4:16994116-16994135 | Msa1316540:intron | 30.0% | |
| CATCAAATAAAAAGGAATGG+AGG | + | chr8_4:16994734-16994753 | None:intergenic | 30.0% | |
| GGCAGCCAAAAAATAAAATA+AGG | + | chr8_4:16994429-16994448 | None:intergenic | 30.0% | |
| AAAAAAGCAAGGAGTAATCA+TGG | + | chr8_4:16994450-16994469 | None:intergenic | 30.0% | |
| ACCGTTCATTTAAGAAGATT+TGG | + | chr8_4:16994485-16994504 | None:intergenic | 30.0% | |
| AAATCTTCTTAAATGAACGG+TGG | - | chr8_4:16994484-16994503 | Msa1316540:intron | 30.0% | |
| AATCTTCTTAAATGAACGGT+GGG | - | chr8_4:16994485-16994504 | Msa1316540:intron | 30.0% | |
| !!! | ATACTCCCACCATTATTTTT+TGG | + | chr8_4:16994588-16994607 | None:intergenic | 30.0% |
| CATCAAATAAAAAGGAATGG+AGG | - | chr8_4:16994734-16994753 | Msa1316540:intron | 30.0% | |
| GGTAAATAGAAACCAGAAAA+TGG | - | chr8_4:16994989-16995008 | Msa1316540:intron | 30.0% | |
| TGAGCAGCATAAACAATAAA+TGG | + | chr8_4:16995156-16995175 | None:intergenic | 30.0% | |
| !!! | TGATAACTGGTGGTTTTTTA+GGG | + | chr8_4:16995184-16995203 | None:intergenic | 30.0% |
| TACAAGTAATTGCTGATAAC+TGG | + | chr8_4:16995197-16995216 | None:intergenic | 30.0% | |
| !! | CATGTTTCAATTTTAGCATG+GGG | + | chr8_4:16995222-16995241 | None:intergenic | 30.0% |
| ! | TTTGGAAATATCAAGAGCAT+GGG | + | chr8_4:16995362-16995381 | None:intergenic | 30.0% |
| ATTTGGAAATATCAAGAGCA+TGG | + | chr8_4:16995363-16995382 | None:intergenic | 30.0% | |
| ! | GAACTTTAAGTTAAGCATGA+AGG | + | chr8_4:16995395-16995414 | None:intergenic | 30.0% |
| TTCACTTTCCTTTATTGATC+TGG | - | chr8_4:16995445-16995464 | Msa1316540:CDS | 30.0% | |
| TGCAATTTCCAGATCAATAA+AGG | + | chr8_4:16995456-16995475 | None:intergenic | 30.0% | |
| TTGTATAGTAGTAGTGTTGT+TGG | - | chr8_4:16995570-16995589 | Msa1316540:intron | 30.0% | |
| !!! | TAGTTTTTGGTCAATGAAAG+AGG | - | chr8_4:16995649-16995668 | Msa1316540:CDS | 30.0% |
| !!! | AGTTTTTGGTCAATGAAAGA+GGG | - | chr8_4:16995650-16995669 | Msa1316540:CDS | 30.0% |
| ATTGATGCTGTGATATGAAG+TGG | + | chr8_4:16993091-16993110 | None:intergenic | 35.0% | |
| ATCACAGCATCAATACCATT+TGG | - | chr8_4:16993097-16993116 | Msa1316540:CDS | 35.0% | |
| AGCATCAATACCATTTGGTT+GGG | - | chr8_4:16993102-16993121 | Msa1316540:CDS | 35.0% | |
| AAGGATTGTTGTGATTCCTT+TGG | - | chr8_4:16993271-16993290 | Msa1316540:intron | 35.0% | |
| !!! | GATTCCTTTGGTTTTGAAAG+TGG | - | chr8_4:16993283-16993302 | Msa1316540:intron | 35.0% |
| TTTCCCACTTTCAAAACCAA+AGG | + | chr8_4:16993290-16993309 | None:intergenic | 35.0% | |
| !!! | GTTTTGAAAGTGGGAAACTT+GGG | - | chr8_4:16993293-16993312 | Msa1316540:intron | 35.0% |
| ACTTGGGAGTTTGATTCTTA+AGG | - | chr8_4:16993309-16993328 | Msa1316540:intron | 35.0% | |
| TTGATCATCTTCTGGTGATA+AGG | - | chr8_4:16993408-16993427 | Msa1316540:intron | 35.0% | |
| ! | GATAATGATAATGTGGTTGG+TGG | - | chr8_4:16993430-16993449 | Msa1316540:intron | 35.0% |
| ATTTACCCAAACAAGAGACT+TGG | + | chr8_4:16993536-16993555 | None:intergenic | 35.0% | |
| !! | TGATTTGATTTGGGTTATGC+TGG | - | chr8_4:16993615-16993634 | Msa1316540:intron | 35.0% |
| GTTAAGTGAAATCTACCACA+GGG | + | chr8_4:16993799-16993818 | None:intergenic | 35.0% | |
| AGTTAAGTGAAATCTACCAC+AGG | + | chr8_4:16993800-16993819 | None:intergenic | 35.0% | |
| !! | ACTAGTTTACTGGTTTAGAG+TGG | - | chr8_4:16993817-16993836 | Msa1316540:intron | 35.0% |
| AGAAAATGGGTCAGTTATTC+CGG | + | chr8_4:16994236-16994255 | None:intergenic | 35.0% | |
| ! | TGGAGGGAGTATATTGTATT+GGG | + | chr8_4:16994318-16994337 | None:intergenic | 35.0% |
| ! | ATGGAGGGAGTATATTGTAT+TGG | + | chr8_4:16994319-16994338 | None:intergenic | 35.0% |
| ACACTTCCAAAAAATGAACG+TGG | - | chr8_4:16994543-16994562 | Msa1316540:intron | 35.0% | |
| CACTTCCAAAAAATGAACGT+GGG | - | chr8_4:16994544-16994563 | Msa1316540:intron | 35.0% | |
| !!! | ATACTCCCACGTTCATTTTT+TGG | + | chr8_4:16994552-16994571 | None:intergenic | 35.0% |
| GTTTGTGACAAGGGTAAAAT+TGG | - | chr8_4:16994650-16994669 | Msa1316540:intron | 35.0% | |
| TGTATAAATGAAGGGGAAAG+TGG | + | chr8_4:16994808-16994827 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | - | chr8_4:16994838-16994857 | Msa1316540:intron | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | - | chr8_4:16994851-16994870 | Msa1316540:intron | 35.0% | |
| CAAAGTAGGTCAATTATACC+GGG | - | chr8_4:16994852-16994871 | Msa1316540:intron | 35.0% | |
| GTGCACAAGGGAAAATATTA+AGG | - | chr8_4:16995057-16995076 | Msa1316540:intron | 35.0% | |
| AAAATATTAAGGACAGCTGG+CGG | - | chr8_4:16995068-16995087 | Msa1316540:intron | 35.0% | |
| TATTCCAGCAGGTAAAAAGT+GGG | + | chr8_4:16995101-16995120 | None:intergenic | 35.0% | |
| ATATTCCAGCAGGTAAAAAG+TGG | + | chr8_4:16995102-16995121 | None:intergenic | 35.0% | |
| !!! | ATAACTGGTGGTTTTTTAGG+GGG | + | chr8_4:16995182-16995201 | None:intergenic | 35.0% |
| !!! | GATAACTGGTGGTTTTTTAG+GGG | + | chr8_4:16995183-16995202 | None:intergenic | 35.0% |
| !!! | CTGATAACTGGTGGTTTTTT+AGG | + | chr8_4:16995185-16995204 | None:intergenic | 35.0% |
| AAGTAATTGCTGATAACTGG+TGG | + | chr8_4:16995194-16995213 | None:intergenic | 35.0% | |
| ! | CATGAAGGAGAAAGCATATT+TGG | + | chr8_4:16995380-16995399 | None:intergenic | 35.0% |
| ACGTAACAAATCCAGCAAAT+TGG | - | chr8_4:16995729-16995748 | Msa1316540:CDS | 35.0% | |
| !! | TCCAGCAAATTGGCTTTATA+TGG | - | chr8_4:16995739-16995758 | Msa1316540:CDS | 35.0% |
| TCCATATAAAGCCAATTTGC+TGG | + | chr8_4:16995743-16995762 | None:intergenic | 35.0% | |
| GAAGCTTGTGAGGAAGAAAA+TGG | - | chr8_4:16992986-16993005 | Msa1316540:CDS | 40.0% | |
| ! | GTTTTTGTTCCTGATCTCTC+TGG | + | chr8_4:16993064-16993083 | None:intergenic | 40.0% |
| CAGCATCAATACCATTTGGT+TGG | - | chr8_4:16993101-16993120 | Msa1316540:CDS | 40.0% | |
| ACAAGATCAGTACATGGTCT+TGG | + | chr8_4:16993145-16993164 | None:intergenic | 40.0% | |
| TCCAACACTAGTCAAGTGTT+TGG | - | chr8_4:16993177-16993196 | Msa1316540:intron | 40.0% | |
| TCCAAACACTTGACTAGTGT+TGG | + | chr8_4:16993181-16993200 | None:intergenic | 40.0% | |
| GTATCAATGAACAACCTTGG+AGG | + | chr8_4:16993208-16993227 | None:intergenic | 40.0% | |
| ! | TCCATCACCTACAACAGTTT+TGG | - | chr8_4:16993234-16993253 | Msa1316540:intron | 40.0% |
| TCCAAAACTGTTGTAGGTGA+TGG | + | chr8_4:16993238-16993257 | None:intergenic | 40.0% | |
| !!! | TCACCTACAACAGTTTTGGA+TGG | - | chr8_4:16993238-16993257 | Msa1316540:intron | 40.0% |
| TTTGGATGGACCCTACAAAA+AGG | - | chr8_4:16993252-16993271 | Msa1316540:intron | 40.0% | |
| !!! | GGTTTTGAAAGTGGGAAACT+TGG | - | chr8_4:16993292-16993311 | Msa1316540:intron | 40.0% |
| !!! | AAGGGTGTTTTGGTAATTGG+AGG | - | chr8_4:16993353-16993372 | Msa1316540:intron | 40.0% |
| !! | AATGATAATGTGGTTGGTGG+TGG | - | chr8_4:16993433-16993452 | Msa1316540:intron | 40.0% |
| ACAAGAGACTTGGCATGAAA+TGG | + | chr8_4:16993526-16993545 | None:intergenic | 40.0% | |
| TTCATGCCAAGTCTCTTGTT+TGG | - | chr8_4:16993527-16993546 | Msa1316540:intron | 40.0% | |
| ! | TCATGCCAAGTCTCTTGTTT+GGG | - | chr8_4:16993528-16993547 | Msa1316540:intron | 40.0% |
| GAAAATGGGTCAGTTATTCC+GGG | + | chr8_4:16994235-16994254 | None:intergenic | 40.0% | |
| AAAGTGAACGGTTTGTGACA+AGG | - | chr8_4:16994640-16994659 | Msa1316540:intron | 40.0% | |
| AAGTGAACGGTTTGTGACAA+GGG | - | chr8_4:16994641-16994660 | Msa1316540:intron | 40.0% | |
| CCGGTATAATTGACCTACTT+TGG | + | chr8_4:16994854-16994873 | None:intergenic | 40.0% | |
| AAGACTAGATGTGACCATCT+TGG | + | chr8_4:16994893-16994912 | None:intergenic | 40.0% | |
| AAACCAGAAAATGGACAGTG+TGG | - | chr8_4:16994998-16995017 | Msa1316540:intron | 40.0% | |
| GGGAAAATATTAAGGACAGC+TGG | - | chr8_4:16995065-16995084 | Msa1316540:intron | 40.0% | |
| !!! | AAAACCCACTTTTTACCTGC+TGG | - | chr8_4:16995094-16995113 | Msa1316540:intron | 40.0% |
| !!! | TAACTGGTGGTTTTTTAGGG+GGG | + | chr8_4:16995181-16995200 | None:intergenic | 40.0% |
| !!! | GCTCAACATGAGTTTTAGGA+TGG | + | chr8_4:16995288-16995307 | None:intergenic | 40.0% |
| ! | CGAAGCTCAACATGAGTTTT+AGG | + | chr8_4:16995292-16995311 | None:intergenic | 40.0% |
| ATGTTGAGCATGAAGGAGAA+GGG | + | chr8_4:16995318-16995337 | None:intergenic | 40.0% | |
| ! | AAGAAGCATGTTGAGCATGA+AGG | + | chr8_4:16995325-16995344 | None:intergenic | 40.0% |
| !! | ATTGGTGTTGTAGCCATTGT+TGG | + | chr8_4:16995683-16995702 | None:intergenic | 40.0% |
| TTTGTTACGTCAGTTCTCGA+TGG | + | chr8_4:16995719-16995738 | None:intergenic | 40.0% | |
| ATGAAGAGATGGGTGATTAC+CGG | - | chr8_4:16995801-16995820 | Msa1316540:CDS | 40.0% | |
| TGAAAGACGACGATGATGAT+TGG | - | chr8_4:16995849-16995868 | Msa1316540:CDS | 40.0% | |
| GATCTCTCTGGTGAATGCAT+TGG | + | chr8_4:16993052-16993071 | None:intergenic | 45.0% | |
| ATGCATTCACCAGAGAGATC+AGG | - | chr8_4:16993052-16993071 | Msa1316540:CDS | 45.0% | |
| GATGCTGTGATATGAAGTGG+TGG | + | chr8_4:16993088-16993107 | None:intergenic | 45.0% | |
| !! | GTACATGGTCTTGGTTTTCC+TGG | + | chr8_4:16993136-16993155 | None:intergenic | 45.0% |
| ! | AGTGTTTGGAACTTCCTCCA+AGG | - | chr8_4:16993191-16993210 | Msa1316540:intron | 45.0% |
| GGTCCATCCAAAACTGTTGT+AGG | + | chr8_4:16993244-16993263 | None:intergenic | 45.0% | |
| GTGACAAGAATGTGAAGACG+AGG | - | chr8_4:16993467-16993486 | Msa1316540:intron | 45.0% | |
| CGGAGGGAGTAGTACATATT+TGG | + | chr8_4:16994211-16994230 | None:intergenic | 45.0% | |
| GTAGGTCAATTATACCGGGA+CGG | - | chr8_4:16994856-16994875 | Msa1316540:intron | 45.0% | |
| ! | CACAAGTCTTTTGCTTGTGC+AGG | + | chr8_4:16995034-16995053 | None:intergenic | 45.0% |
| AAGACTTGTGCATGTGCACA+AGG | - | chr8_4:16995044-16995063 | Msa1316540:intron | 45.0% | |
| AGACTTGTGCATGTGCACAA+GGG | - | chr8_4:16995045-16995064 | Msa1316540:intron | 45.0% | |
| GTGTTTCACGTGTGAAGCTA+AGG | + | chr8_4:16995266-16995285 | None:intergenic | 45.0% | |
| CATGTTGAGCATGAAGGAGA+AGG | + | chr8_4:16995319-16995338 | None:intergenic | 45.0% | |
| ! | GGAAATATCAAGAGCATGGG+TGG | + | chr8_4:16995359-16995378 | None:intergenic | 45.0% |
| AGAGGGTAAGAAGCCAACAA+TGG | - | chr8_4:16995667-16995686 | Msa1316540:CDS | 45.0% | |
| GATGGATCTGGCAACAAGAT+TGG | + | chr8_4:16995701-16995720 | None:intergenic | 45.0% | |
| TGAAGAGATGGGTGATTACC+GGG | - | chr8_4:16995802-16995821 | Msa1316540:CDS | 45.0% | |
| ! | TGATGATTGGCGTCGAAGAA+TGG | - | chr8_4:16995862-16995881 | Msa1316540:CDS | 45.0% |
| AACTTCCATTATCCTCCACC+CGG | - | chr8_4:16995959-16995978 | Msa1316540:CDS | 45.0% | |
| GGTGGAGGGCTCATGAATAA+TGG | + | chr8_4:16993031-16993050 | None:intergenic | 50.0% | |
| ! | CTGGTGAATGCATTGGTGGA+GGG | + | chr8_4:16993045-16993064 | None:intergenic | 50.0% |
| ! | TCTGGTGAATGCATTGGTGG+AGG | + | chr8_4:16993046-16993065 | None:intergenic | 50.0% |
| CTCTCTGGTGAATGCATTGG+TGG | + | chr8_4:16993049-16993068 | None:intergenic | 50.0% | |
| GGCTCTTCTTCCCAACCAAA+TGG | + | chr8_4:16993115-16993134 | None:intergenic | 50.0% | |
| TTTGGTTGGGAAGAAGAGCC+AGG | - | chr8_4:16993115-16993134 | Msa1316540:CDS | 50.0% | |
| !! | GTGGTTGGTGGTGGCATTAT+TGG | - | chr8_4:16993442-16993461 | Msa1316540:intron | 50.0% |
| ATGGGTCAGTTATTCCGGGA+CGG | + | chr8_4:16994231-16994250 | None:intergenic | 50.0% | |
| GTCAATTATACCGGGACGGA+GGG | - | chr8_4:16994860-16994879 | Msa1316540:intron | 50.0% | |
| ! | CCACCACACTGTCCATTTTC+TGG | + | chr8_4:16995004-16995023 | None:intergenic | 50.0% |
| CCAGAAAATGGACAGTGTGG+TGG | - | chr8_4:16995001-16995020 | Msa1316540:intron | 50.0% | |
| ! | ATCAAGAGCATGGGTGGCTA+TGG | + | chr8_4:16995353-16995372 | None:intergenic | 50.0% |
| ACGTCAGTTCTCGATGGATC+TGG | + | chr8_4:16995713-16995732 | None:intergenic | 50.0% | |
| TTCACGGGTACCTAAAGAGC+AGG | - | chr8_4:16995769-16995788 | Msa1316540:intron | 50.0% | |
| GCTGGCAGAGATGAAGAGAT+GGG | - | chr8_4:16995791-16995810 | Msa1316540:CDS | 50.0% | |
| TCGTCTTTCATTCCAGTCGC+AGG | + | chr8_4:16995839-16995858 | None:intergenic | 50.0% | |
| ! | TGATTGGCGTCGAAGAATGG+AGG | - | chr8_4:16995865-16995884 | Msa1316540:CDS | 50.0% |
| ATGTACTACTCCCTCCGTCC+CGG | - | chr8_4:16994214-16994233 | Msa1316540:intron | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | + | chr8_4:16994227-16994246 | None:intergenic | 55.0% | |
| GGTCAATTATACCGGGACGG+AGG | - | chr8_4:16994859-16994878 | Msa1316540:intron | 55.0% | |
| ! | CGGAGGGAGTATAGCCAAGA+TGG | - | chr8_4:16994876-16994895 | Msa1316540:intron | 55.0% |
| TCTCTGCCAGCCTGCTCTTT+AGG | + | chr8_4:16995782-16995801 | None:intergenic | 55.0% | |
| GGCTGGCAGAGATGAAGAGA+TGG | - | chr8_4:16995790-16995809 | Msa1316540:CDS | 55.0% | |
| AGAGATGGGTGATTACCGGG+AGG | - | chr8_4:16995805-16995824 | Msa1316540:CDS | 55.0% | |
| GGCTGACAGGACGTATGATG+AGG | - | chr8_4:16995892-16995911 | Msa1316540:CDS | 55.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | + | chr8_4:16994228-16994247 | None:intergenic | 60.0% | |
| TGGCTATACTCCCTCCGTCC+CGG | + | chr8_4:16994873-16994892 | None:intergenic | 60.0% | |
| CGGGTACCTAAAGAGCAGGC+TGG | - | chr8_4:16995773-16995792 | Msa1316540:intron | 60.0% | |
| TCGCAGGTTGTTGCTCCTCC+CGG | + | chr8_4:16995823-16995842 | None:intergenic | 60.0% | |
| GAGGAGCAACAACCTGCGAC+TGG | - | chr8_4:16995824-16995843 | Msa1316540:CDS | 60.0% | |
| GCGTCGAAGAATGGAGGCGA+AGG | - | chr8_4:16995871-16995890 | Msa1316540:CDS | 60.0% | |
| GAATGGAGGCGAAGGCTGAC+AGG | - | chr8_4:16995879-16995898 | Msa1316540:CDS | 60.0% | |
| CTGGACCGGGTGGAGGATAA+TGG | + | chr8_4:16995967-16995986 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 16992983 | 16995991 | 16992983 | ID=Msa1316540;Name=Msa1316540 |
| chr8_4 | mRNA | 16992983 | 16995991 | 16992983 | ID=Msa1316540-mRNA-1;Parent=Msa1316540;Name=Msa1316540-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|1|4|0|235 |
| chr8_4 | exon | 16995783 | 16995991 | 16995783 | ID=Msa1316540-mRNA-1:exon:6341;Parent=Msa1316540-mRNA-1 |
| chr8_4 | exon | 16995584 | 16995761 | 16995584 | ID=Msa1316540-mRNA-1:exon:6340;Parent=Msa1316540-mRNA-1 |
| chr8_4 | exon | 16995425 | 16995544 | 16995425 | ID=Msa1316540-mRNA-1:exon:6339;Parent=Msa1316540-mRNA-1 |
| chr8_4 | exon | 16992983 | 16993183 | 16992983 | ID=Msa1316540-mRNA-1:exon:6338;Parent=Msa1316540-mRNA-1 |
| chr8_4 | CDS | 16995783 | 16995991 | 16995783 | ID=Msa1316540-mRNA-1:cds;Parent=Msa1316540-mRNA-1 |
| chr8_4 | CDS | 16995584 | 16995761 | 16995584 | ID=Msa1316540-mRNA-1:cds;Parent=Msa1316540-mRNA-1 |
| chr8_4 | CDS | 16995425 | 16995544 | 16995425 | ID=Msa1316540-mRNA-1:cds;Parent=Msa1316540-mRNA-1 |
| chr8_4 | CDS | 16992983 | 16993183 | 16992983 | ID=Msa1316540-mRNA-1:cds;Parent=Msa1316540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
