AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1316540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1316540 MtrunA17_Chr8g0346691 83.770 191 10 3 1 170 1 191 2.17e-106 305
Msa1316540 MtrunA17_Chr7g0233401 66.102 59 19 1 171 229 53 110 9.73e-21 84.7
Msa1316540 MtrunA17_Chr7g0275851 38.788 165 63 9 4 138 79 235 2.21e-20 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 61 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCATTAAAGTTTATCATTC+TGG 0.197912 8_4:+16992969 None:intergenic
GTGGTTGGTGGTGGCATTAT+TGG 0.232077 8_4:-16995510 Msa1316540:CDS
TTGGAGGAAAATGGATATTA+AGG 0.240978 8_4:-16995583 Msa1316540:intron
TCCATCACCTACAACAGTTT+TGG 0.286053 8_4:-16995718 Msa1316540:CDS
CTCATGAATAATGGAAGTTT+TGG 0.308636 8_4:+16995933 None:intergenic
TTCATGCCAAGTCTCTTGTT+TGG 0.319122 8_4:-16995425 Msa1316540:CDS
TTTGGATGGACCCTACAAAA+AGG 0.345193 8_4:-16995700 Msa1316540:CDS
TCATGCCAAGTCTCTTGTTT+GGG 0.361967 8_4:-16995424 Msa1316540:intron
ACTTGGGAGTTTGATTCTTA+AGG 0.363896 8_4:-16995643 Msa1316540:CDS
ATGAAGAGATGGGTGATTAC+CGG 0.380961 8_4:-16993151 Msa1316540:CDS
CTGGACCGGGTGGAGGATAA+TGG 0.386160 8_4:+16992988 None:intergenic
ACAAGAGACTTGGCATGAAA+TGG 0.388152 8_4:+16995429 None:intergenic
GAAGCTTGTGAGGAAGAAAA+TGG 0.395638 8_4:-16995966 Msa1316540:CDS
AAGGATTGTTGTGATTCCTT+TGG 0.404092 8_4:-16995681 Msa1316540:CDS
AGGAAGAAGATAAAACATTA+TGG 0.406591 8_4:-16995465 Msa1316540:CDS
TGATGATTGGCGTCGAAGAA+TGG 0.418037 8_4:-16993090 Msa1316540:CDS
GGTGGAGGGCTCATGAATAA+TGG 0.418821 8_4:+16995924 None:intergenic
ATCACAGCATCAATACCATT+TGG 0.441782 8_4:-16995855 Msa1316540:CDS
ACAAGATCAGTACATGGTCT+TGG 0.444506 8_4:+16995810 None:intergenic
TCCAAACACTTGACTAGTGT+TGG 0.454319 8_4:+16995774 None:intergenic
CTCTCTGGTGAATGCATTGG+TGG 0.455474 8_4:+16995906 None:intergenic
AGCATCAATACCATTTGGTT+GGG 0.456795 8_4:-16995850 Msa1316540:CDS
GGTCCATCCAAAACTGTTGT+AGG 0.469058 8_4:+16995711 None:intergenic
TGAAAGACGACGATGATGAT+TGG 0.469552 8_4:-16993103 Msa1316540:CDS
TAAAGTTTATCATTCTGGAC+CGG 0.470455 8_4:+16992974 None:intergenic
GAATGGAGGCGAAGGCTGAC+AGG 0.493199 8_4:-16993073 Msa1316540:CDS
CAGCATCAATACCATTTGGT+TGG 0.495412 8_4:-16995851 Msa1316540:CDS
TTTGGTTGGGAAGAAGAGCC+AGG 0.497915 8_4:-16995837 Msa1316540:CDS
GGCTCTTCTTCCCAACCAAA+TGG 0.498578 8_4:+16995840 None:intergenic
TCTGGTGAATGCATTGGTGG+AGG 0.503654 8_4:+16995909 None:intergenic
TCCAAAACTGTTGTAGGTGA+TGG 0.506928 8_4:+16995717 None:intergenic
TATCATTCTGGACCGGGTGG+AGG 0.513385 8_4:+16992981 None:intergenic
GATTCTTAAGGAAGAAATGA+GGG 0.514201 8_4:-16995631 Msa1316540:CDS
GATCTCTCTGGTGAATGCAT+TGG 0.516177 8_4:+16995903 None:intergenic
TGAAGAGATGGGTGATTACC+GGG 0.519438 8_4:-16993150 Msa1316540:CDS
GGCTGGCAGAGATGAAGAGA+TGG 0.522040 8_4:-16993162 Msa1316540:CDS
GAGGAGCAACAACCTGCGAC+TGG 0.522879 8_4:-16993128 Msa1316540:CDS
TCGCAGGTTGTTGCTCCTCC+CGG 0.527228 8_4:+16993132 None:intergenic
CTGGTGAATGCATTGGTGGA+GGG 0.527666 8_4:+16995910 None:intergenic
TCGTCTTTCATTCCAGTCGC+AGG 0.528542 8_4:+16993116 None:intergenic
TGATTCTTAAGGAAGAAATG+AGG 0.535606 8_4:-16995632 Msa1316540:CDS
TTTCCCACTTTCAAAACCAA+AGG 0.551891 8_4:+16995665 None:intergenic
ATGCATTCACCAGAGAGATC+AGG 0.552291 8_4:-16995900 Msa1316540:CDS
AGTGAAAATGGAAGCTTGTG+AGG 0.556127 8_4:-16995976 None:intergenic
AATGATAATGTGGTTGGTGG+TGG 0.559273 8_4:-16995519 Msa1316540:CDS
ATTTACCCAAACAAGAGACT+TGG 0.560482 8_4:+16995419 None:intergenic
GATAATGATAATGTGGTTGG+TGG 0.575718 8_4:-16995522 Msa1316540:CDS
AAAGTTTATCATTCTGGACC+GGG 0.591125 8_4:+16992975 None:intergenic
GCGTCGAAGAATGGAGGCGA+AGG 0.594977 8_4:-16993081 Msa1316540:CDS
AAGGATAATGATAATGTGGT+TGG 0.603829 8_4:-16995525 Msa1316540:CDS
GCTGGCAGAGATGAAGAGAT+GGG 0.610499 8_4:-16993161 Msa1316540:CDS
AACTTCCATTATCCTCCACC+CGG 0.630650 8_4:-16992993 Msa1316540:CDS
GGCTGACAGGACGTATGATG+AGG 0.635222 8_4:-16993060 Msa1316540:CDS
TGATAAGGATAATGATAATG+TGG 0.637344 8_4:-16995529 Msa1316540:intron
TGATTGGCGTCGAAGAATGG+AGG 0.648326 8_4:-16993087 Msa1316540:CDS
GTTTATCATTCTGGACCGGG+TGG 0.658479 8_4:+16992978 None:intergenic
ATTGATGCTGTGATATGAAG+TGG 0.663709 8_4:+16995864 None:intergenic
AATGTTACAAGATCAGTACA+TGG 0.674281 8_4:+16995804 None:intergenic
GTGACAAGAATGTGAAGACG+AGG 0.687739 8_4:-16995485 Msa1316540:CDS
GATGCTGTGATATGAAGTGG+TGG 0.702825 8_4:+16995867 None:intergenic
AGAGATGGGTGATTACCGGG+AGG 0.749155 8_4:-16993147 Msa1316540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGTAAATATAATTATTG+TGG - chr8_4:16993844-16993863 Msa1316540:intron 10.0%
!! TAAATAAAATGATTTATCTT+AGG + chr8_4:16994072-16994091 None:intergenic 10.0%
!!! AAATGTTTTTTTATGATATA+TGG - chr8_4:16995544-16995563 Msa1316540:intron 10.0%
!! TTGTTATAGAAATTTCTATT+TGG - chr8_4:16993692-16993711 Msa1316540:intron 15.0%
!!! ATAGTTGATTTTGATATTTT+TGG - chr8_4:16993909-16993928 Msa1316540:intron 15.0%
!!! AATACCCTTATTTTATTTTT+TGG - chr8_4:16994421-16994440 Msa1316540:intron 15.0%
!!! TTTTTTCATCCAAAAAATAA+TGG - chr8_4:16994576-16994595 Msa1316540:intron 15.0%
!!! TATACAATTGAAAAAGTATA+AGG - chr8_4:16994605-16994624 Msa1316540:intron 15.0%
!! TAGTCTTTGTAAAAAAAAAA+AGG - chr8_4:16994906-16994925 Msa1316540:intron 15.0%
!! ATTATTTATTCTTTCAGTTA+TGG + chr8_4:16995617-16995636 None:intergenic 15.0%
!!! TAGTGTATTTTGATTTGATT+TGG - chr8_4:16993605-16993624 Msa1316540:intron 20.0%
!!! AGTGTATTTTGATTTGATTT+GGG - chr8_4:16993606-16993625 Msa1316540:intron 20.0%
!! ATATCAAAATCAACTATACT+TGG + chr8_4:16993906-16993925 None:intergenic 20.0%
!! TTAAGCGTTAAAATCATATT+TGG + chr8_4:16994008-16994027 None:intergenic 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr8_4:16994249-16994268 None:intergenic 20.0%
!! AAACATCAAATAAAAAGGAA+TGG + chr8_4:16994731-16994750 None:intergenic 20.0%
!! AGCTAAAACATCAAATAAAA+AGG + chr8_4:16994726-16994745 None:intergenic 20.0%
!! AATGAAAATAGTTGTAGATT+TGG - chr8_4:16994393-16994412 Msa1316540:intron 20.0%
!!! ATTTGATGTTTTAGAATTGT+TGG + chr8_4:16994686-16994705 None:intergenic 20.0%
!! AGCTAAAACATCAAATAAAA+AGG - chr8_4:16994726-16994745 Msa1316540:intron 20.0%
!! AAACATCAAATAAAAAGGAA+TGG - chr8_4:16994731-16994750 Msa1316540:intron 20.0%
!! AAAGTGGAATATATTGTATT+AGG + chr8_4:16994792-16994811 None:intergenic 20.0%
!!! AAGAAAAGTGTATAAATGAA+GGG + chr8_4:16994816-16994835 None:intergenic 20.0%
!!! TAAGAAAAGTGTATAAATGA+AGG + chr8_4:16994817-16994836 None:intergenic 20.0%
!! AGGAAGAATAATAATAATGT+TGG - chr8_4:16994926-16994945 Msa1316540:intron 20.0%
!! GGAAGAATAATAATAATGTT+GGG - chr8_4:16994927-16994946 Msa1316540:intron 20.0%
!!! AGTGATTTTTTCTAAAATGT+AGG - chr8_4:16994967-16994986 Msa1316540:intron 20.0%
!!! GTGATTTTTTCTAAAATGTA+GGG - chr8_4:16994968-16994987 Msa1316540:intron 20.0%
!!! TAGATTCATTTTCAACATAA+AGG - chr8_4:16995494-16995513 Msa1316540:CDS 20.0%
!!! TGTATTTTTGAGTTAGTTTT+TGG - chr8_4:16995636-16995655 Msa1316540:CDS 20.0%
!! TTTATATGGATTTAGATTCA+CGG - chr8_4:16995753-16995772 Msa1316540:intron 20.0%
! AAATGAGGGTAAAGAAAAAA+GGG - chr8_4:16993335-16993354 Msa1316540:intron 25.0%
!! TGATAAGGATAATGATAATG+TGG - chr8_4:16993423-16993442 Msa1316540:intron 25.0%
! AGGAAGAAGATAAAACATTA+TGG - chr8_4:16993487-16993506 Msa1316540:intron 25.0%
!! AAATTTCTATTTGGTTCATG+TGG - chr8_4:16993701-16993720 Msa1316540:intron 25.0%
!! AATTTCTATTTGGTTCATGT+GGG - chr8_4:16993702-16993721 Msa1316540:intron 25.0%
!!! TGAATGTTAAGTTGAATAGT+TGG - chr8_4:16993759-16993778 Msa1316540:intron 25.0%
!! ATTTCACTTAACTAGTTTAC+TGG - chr8_4:16993807-16993826 Msa1316540:intron 25.0%
!! CTTTTGTTAGTAAATCCAAA+TGG + chr8_4:16994134-16994153 None:intergenic 25.0%
! GTAGTACATATTTGGATAAT+TGG + chr8_4:16994203-16994222 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr8_4:16994250-16994269 None:intergenic 25.0%
!!! TGAAATGAGTCAGTTATTTT+GGG + chr8_4:16994271-16994290 None:intergenic 25.0%
!! TTGAAATGAGTCAGTTATTT+TGG + chr8_4:16994272-16994291 None:intergenic 25.0%
! ATCAAATAAAAAGGAATGGA+GGG + chr8_4:16994735-16994754 None:intergenic 25.0%
! GCAGCCAAAAAATAAAATAA+GGG + chr8_4:16994428-16994447 None:intergenic 25.0%
!!! ATTTTGAGAAGAAAAAAGCA+AGG + chr8_4:16994461-16994480 None:intergenic 25.0%
! TCCAAATCTTCTTAAATGAA+CGG - chr8_4:16994481-16994500 Msa1316540:intron 25.0%
! TTTCATCCAAAAAATAATGG+TGG - chr8_4:16994579-16994598 Msa1316540:intron 25.0%
! TTCATCCAAAAAATAATGGT+GGG - chr8_4:16994580-16994599 Msa1316540:intron 25.0%
!!! TGACACTTTTAAAAAGTGAA+CGG - chr8_4:16994628-16994647 Msa1316540:intron 25.0%
! ATCAAATAAAAAGGAATGGA+GGG - chr8_4:16994735-16994754 Msa1316540:intron 25.0%
!! AGAAAAGTGTATAAATGAAG+GGG + chr8_4:16994815-16994834 None:intergenic 25.0%
! TTACATTAAAATATTCCAGC+AGG + chr8_4:16995112-16995131 None:intergenic 25.0%
!!! ACATGTTTCAATTTTAGCAT+GGG + chr8_4:16995223-16995242 None:intergenic 25.0%
!!! TACATGTTTCAATTTTAGCA+TGG + chr8_4:16995224-16995243 None:intergenic 25.0%
!! ATGTTGAACAATTTTGTTGA+TGG + chr8_4:16995422-16995441 None:intergenic 25.0%
! TTATATGGATTTAGATTCAC+GGG - chr8_4:16995754-16995773 Msa1316540:intron 25.0%
!! CTCATGAATAATGGAAGTTT+TGG + chr8_4:16993022-16993041 None:intergenic 30.0%
AATGTTACAAGATCAGTACA+TGG + chr8_4:16993151-16993170 None:intergenic 30.0%
TTTGTATCAATGAACAACCT+TGG + chr8_4:16993211-16993230 None:intergenic 30.0%
! TCACAACAATCCTTTTTGTA+GGG + chr8_4:16993265-16993284 None:intergenic 30.0%
! ATCACAACAATCCTTTTTGT+AGG + chr8_4:16993266-16993285 None:intergenic 30.0%
!!! ATTCCTTTGGTTTTGAAAGT+GGG - chr8_4:16993284-16993303 Msa1316540:intron 30.0%
TGATTCTTAAGGAAGAAATG+AGG - chr8_4:16993320-16993339 Msa1316540:intron 30.0%
GATTCTTAAGGAAGAAATGA+GGG - chr8_4:16993321-16993340 Msa1316540:intron 30.0%
GAAATGAGGGTAAAGAAAAA+AGG - chr8_4:16993334-16993353 Msa1316540:intron 30.0%
!!! GTAAAGAAAAAAGGGTGTTT+TGG - chr8_4:16993343-16993362 Msa1316540:intron 30.0%
!!! AAAAAGGGTGTTTTGGTAAT+TGG - chr8_4:16993350-16993369 Msa1316540:intron 30.0%
!! TTTTGGTAATTGGAGGAAAA+TGG - chr8_4:16993360-16993379 Msa1316540:intron 30.0%
TTGGAGGAAAATGGATATTA+AGG - chr8_4:16993369-16993388 Msa1316540:intron 30.0%
!!! CATGTTTTTTGATCATCTTC+TGG - chr8_4:16993400-16993419 Msa1316540:intron 30.0%
! AAGGATAATGATAATGTGGT+TGG - chr8_4:16993427-16993446 Msa1316540:intron 30.0%
GTTATTTAGATTAAACCCTG+TGG - chr8_4:16993781-16993800 Msa1316540:intron 30.0%
AGCGTTAAAATCATATTTGG+TGG + chr8_4:16994005-16994024 None:intergenic 30.0%
TTCATGAAATATGCACCATT+TGG - chr8_4:16994116-16994135 Msa1316540:intron 30.0%
CATCAAATAAAAAGGAATGG+AGG + chr8_4:16994734-16994753 None:intergenic 30.0%
GGCAGCCAAAAAATAAAATA+AGG + chr8_4:16994429-16994448 None:intergenic 30.0%
AAAAAAGCAAGGAGTAATCA+TGG + chr8_4:16994450-16994469 None:intergenic 30.0%
ACCGTTCATTTAAGAAGATT+TGG + chr8_4:16994485-16994504 None:intergenic 30.0%
AAATCTTCTTAAATGAACGG+TGG - chr8_4:16994484-16994503 Msa1316540:intron 30.0%
AATCTTCTTAAATGAACGGT+GGG - chr8_4:16994485-16994504 Msa1316540:intron 30.0%
!!! ATACTCCCACCATTATTTTT+TGG + chr8_4:16994588-16994607 None:intergenic 30.0%
CATCAAATAAAAAGGAATGG+AGG - chr8_4:16994734-16994753 Msa1316540:intron 30.0%
GGTAAATAGAAACCAGAAAA+TGG - chr8_4:16994989-16995008 Msa1316540:intron 30.0%
TGAGCAGCATAAACAATAAA+TGG + chr8_4:16995156-16995175 None:intergenic 30.0%
!!! TGATAACTGGTGGTTTTTTA+GGG + chr8_4:16995184-16995203 None:intergenic 30.0%
TACAAGTAATTGCTGATAAC+TGG + chr8_4:16995197-16995216 None:intergenic 30.0%
!! CATGTTTCAATTTTAGCATG+GGG + chr8_4:16995222-16995241 None:intergenic 30.0%
! TTTGGAAATATCAAGAGCAT+GGG + chr8_4:16995362-16995381 None:intergenic 30.0%
ATTTGGAAATATCAAGAGCA+TGG + chr8_4:16995363-16995382 None:intergenic 30.0%
! GAACTTTAAGTTAAGCATGA+AGG + chr8_4:16995395-16995414 None:intergenic 30.0%
TTCACTTTCCTTTATTGATC+TGG - chr8_4:16995445-16995464 Msa1316540:CDS 30.0%
TGCAATTTCCAGATCAATAA+AGG + chr8_4:16995456-16995475 None:intergenic 30.0%
TTGTATAGTAGTAGTGTTGT+TGG - chr8_4:16995570-16995589 Msa1316540:intron 30.0%
!!! TAGTTTTTGGTCAATGAAAG+AGG - chr8_4:16995649-16995668 Msa1316540:CDS 30.0%
!!! AGTTTTTGGTCAATGAAAGA+GGG - chr8_4:16995650-16995669 Msa1316540:CDS 30.0%
ATTGATGCTGTGATATGAAG+TGG + chr8_4:16993091-16993110 None:intergenic 35.0%
ATCACAGCATCAATACCATT+TGG - chr8_4:16993097-16993116 Msa1316540:CDS 35.0%
AGCATCAATACCATTTGGTT+GGG - chr8_4:16993102-16993121 Msa1316540:CDS 35.0%
AAGGATTGTTGTGATTCCTT+TGG - chr8_4:16993271-16993290 Msa1316540:intron 35.0%
!!! GATTCCTTTGGTTTTGAAAG+TGG - chr8_4:16993283-16993302 Msa1316540:intron 35.0%
TTTCCCACTTTCAAAACCAA+AGG + chr8_4:16993290-16993309 None:intergenic 35.0%
!!! GTTTTGAAAGTGGGAAACTT+GGG - chr8_4:16993293-16993312 Msa1316540:intron 35.0%
ACTTGGGAGTTTGATTCTTA+AGG - chr8_4:16993309-16993328 Msa1316540:intron 35.0%
TTGATCATCTTCTGGTGATA+AGG - chr8_4:16993408-16993427 Msa1316540:intron 35.0%
! GATAATGATAATGTGGTTGG+TGG - chr8_4:16993430-16993449 Msa1316540:intron 35.0%
ATTTACCCAAACAAGAGACT+TGG + chr8_4:16993536-16993555 None:intergenic 35.0%
!! TGATTTGATTTGGGTTATGC+TGG - chr8_4:16993615-16993634 Msa1316540:intron 35.0%
GTTAAGTGAAATCTACCACA+GGG + chr8_4:16993799-16993818 None:intergenic 35.0%
AGTTAAGTGAAATCTACCAC+AGG + chr8_4:16993800-16993819 None:intergenic 35.0%
!! ACTAGTTTACTGGTTTAGAG+TGG - chr8_4:16993817-16993836 Msa1316540:intron 35.0%
AGAAAATGGGTCAGTTATTC+CGG + chr8_4:16994236-16994255 None:intergenic 35.0%
! TGGAGGGAGTATATTGTATT+GGG + chr8_4:16994318-16994337 None:intergenic 35.0%
! ATGGAGGGAGTATATTGTAT+TGG + chr8_4:16994319-16994338 None:intergenic 35.0%
ACACTTCCAAAAAATGAACG+TGG - chr8_4:16994543-16994562 Msa1316540:intron 35.0%
CACTTCCAAAAAATGAACGT+GGG - chr8_4:16994544-16994563 Msa1316540:intron 35.0%
!!! ATACTCCCACGTTCATTTTT+TGG + chr8_4:16994552-16994571 None:intergenic 35.0%
GTTTGTGACAAGGGTAAAAT+TGG - chr8_4:16994650-16994669 Msa1316540:intron 35.0%
TGTATAAATGAAGGGGAAAG+TGG + chr8_4:16994808-16994827 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG - chr8_4:16994838-16994857 Msa1316540:intron 35.0%
CCAAAGTAGGTCAATTATAC+CGG - chr8_4:16994851-16994870 Msa1316540:intron 35.0%
CAAAGTAGGTCAATTATACC+GGG - chr8_4:16994852-16994871 Msa1316540:intron 35.0%
GTGCACAAGGGAAAATATTA+AGG - chr8_4:16995057-16995076 Msa1316540:intron 35.0%
AAAATATTAAGGACAGCTGG+CGG - chr8_4:16995068-16995087 Msa1316540:intron 35.0%
TATTCCAGCAGGTAAAAAGT+GGG + chr8_4:16995101-16995120 None:intergenic 35.0%
ATATTCCAGCAGGTAAAAAG+TGG + chr8_4:16995102-16995121 None:intergenic 35.0%
!!! ATAACTGGTGGTTTTTTAGG+GGG + chr8_4:16995182-16995201 None:intergenic 35.0%
!!! GATAACTGGTGGTTTTTTAG+GGG + chr8_4:16995183-16995202 None:intergenic 35.0%
!!! CTGATAACTGGTGGTTTTTT+AGG + chr8_4:16995185-16995204 None:intergenic 35.0%
AAGTAATTGCTGATAACTGG+TGG + chr8_4:16995194-16995213 None:intergenic 35.0%
! CATGAAGGAGAAAGCATATT+TGG + chr8_4:16995380-16995399 None:intergenic 35.0%
ACGTAACAAATCCAGCAAAT+TGG - chr8_4:16995729-16995748 Msa1316540:CDS 35.0%
!! TCCAGCAAATTGGCTTTATA+TGG - chr8_4:16995739-16995758 Msa1316540:CDS 35.0%
TCCATATAAAGCCAATTTGC+TGG + chr8_4:16995743-16995762 None:intergenic 35.0%
GAAGCTTGTGAGGAAGAAAA+TGG - chr8_4:16992986-16993005 Msa1316540:CDS 40.0%
! GTTTTTGTTCCTGATCTCTC+TGG + chr8_4:16993064-16993083 None:intergenic 40.0%
CAGCATCAATACCATTTGGT+TGG - chr8_4:16993101-16993120 Msa1316540:CDS 40.0%
ACAAGATCAGTACATGGTCT+TGG + chr8_4:16993145-16993164 None:intergenic 40.0%
TCCAACACTAGTCAAGTGTT+TGG - chr8_4:16993177-16993196 Msa1316540:intron 40.0%
TCCAAACACTTGACTAGTGT+TGG + chr8_4:16993181-16993200 None:intergenic 40.0%
GTATCAATGAACAACCTTGG+AGG + chr8_4:16993208-16993227 None:intergenic 40.0%
! TCCATCACCTACAACAGTTT+TGG - chr8_4:16993234-16993253 Msa1316540:intron 40.0%
TCCAAAACTGTTGTAGGTGA+TGG + chr8_4:16993238-16993257 None:intergenic 40.0%
!!! TCACCTACAACAGTTTTGGA+TGG - chr8_4:16993238-16993257 Msa1316540:intron 40.0%
TTTGGATGGACCCTACAAAA+AGG - chr8_4:16993252-16993271 Msa1316540:intron 40.0%
!!! GGTTTTGAAAGTGGGAAACT+TGG - chr8_4:16993292-16993311 Msa1316540:intron 40.0%
!!! AAGGGTGTTTTGGTAATTGG+AGG - chr8_4:16993353-16993372 Msa1316540:intron 40.0%
!! AATGATAATGTGGTTGGTGG+TGG - chr8_4:16993433-16993452 Msa1316540:intron 40.0%
ACAAGAGACTTGGCATGAAA+TGG + chr8_4:16993526-16993545 None:intergenic 40.0%
TTCATGCCAAGTCTCTTGTT+TGG - chr8_4:16993527-16993546 Msa1316540:intron 40.0%
! TCATGCCAAGTCTCTTGTTT+GGG - chr8_4:16993528-16993547 Msa1316540:intron 40.0%
GAAAATGGGTCAGTTATTCC+GGG + chr8_4:16994235-16994254 None:intergenic 40.0%
AAAGTGAACGGTTTGTGACA+AGG - chr8_4:16994640-16994659 Msa1316540:intron 40.0%
AAGTGAACGGTTTGTGACAA+GGG - chr8_4:16994641-16994660 Msa1316540:intron 40.0%
CCGGTATAATTGACCTACTT+TGG + chr8_4:16994854-16994873 None:intergenic 40.0%
AAGACTAGATGTGACCATCT+TGG + chr8_4:16994893-16994912 None:intergenic 40.0%
AAACCAGAAAATGGACAGTG+TGG - chr8_4:16994998-16995017 Msa1316540:intron 40.0%
GGGAAAATATTAAGGACAGC+TGG - chr8_4:16995065-16995084 Msa1316540:intron 40.0%
!!! AAAACCCACTTTTTACCTGC+TGG - chr8_4:16995094-16995113 Msa1316540:intron 40.0%
!!! TAACTGGTGGTTTTTTAGGG+GGG + chr8_4:16995181-16995200 None:intergenic 40.0%
!!! GCTCAACATGAGTTTTAGGA+TGG + chr8_4:16995288-16995307 None:intergenic 40.0%
! CGAAGCTCAACATGAGTTTT+AGG + chr8_4:16995292-16995311 None:intergenic 40.0%
ATGTTGAGCATGAAGGAGAA+GGG + chr8_4:16995318-16995337 None:intergenic 40.0%
! AAGAAGCATGTTGAGCATGA+AGG + chr8_4:16995325-16995344 None:intergenic 40.0%
!! ATTGGTGTTGTAGCCATTGT+TGG + chr8_4:16995683-16995702 None:intergenic 40.0%
TTTGTTACGTCAGTTCTCGA+TGG + chr8_4:16995719-16995738 None:intergenic 40.0%
ATGAAGAGATGGGTGATTAC+CGG - chr8_4:16995801-16995820 Msa1316540:CDS 40.0%
TGAAAGACGACGATGATGAT+TGG - chr8_4:16995849-16995868 Msa1316540:CDS 40.0%
GATCTCTCTGGTGAATGCAT+TGG + chr8_4:16993052-16993071 None:intergenic 45.0%
ATGCATTCACCAGAGAGATC+AGG - chr8_4:16993052-16993071 Msa1316540:CDS 45.0%
GATGCTGTGATATGAAGTGG+TGG + chr8_4:16993088-16993107 None:intergenic 45.0%
!! GTACATGGTCTTGGTTTTCC+TGG + chr8_4:16993136-16993155 None:intergenic 45.0%
! AGTGTTTGGAACTTCCTCCA+AGG - chr8_4:16993191-16993210 Msa1316540:intron 45.0%
GGTCCATCCAAAACTGTTGT+AGG + chr8_4:16993244-16993263 None:intergenic 45.0%
GTGACAAGAATGTGAAGACG+AGG - chr8_4:16993467-16993486 Msa1316540:intron 45.0%
CGGAGGGAGTAGTACATATT+TGG + chr8_4:16994211-16994230 None:intergenic 45.0%
GTAGGTCAATTATACCGGGA+CGG - chr8_4:16994856-16994875 Msa1316540:intron 45.0%
! CACAAGTCTTTTGCTTGTGC+AGG + chr8_4:16995034-16995053 None:intergenic 45.0%
AAGACTTGTGCATGTGCACA+AGG - chr8_4:16995044-16995063 Msa1316540:intron 45.0%
AGACTTGTGCATGTGCACAA+GGG - chr8_4:16995045-16995064 Msa1316540:intron 45.0%
GTGTTTCACGTGTGAAGCTA+AGG + chr8_4:16995266-16995285 None:intergenic 45.0%
CATGTTGAGCATGAAGGAGA+AGG + chr8_4:16995319-16995338 None:intergenic 45.0%
! GGAAATATCAAGAGCATGGG+TGG + chr8_4:16995359-16995378 None:intergenic 45.0%
AGAGGGTAAGAAGCCAACAA+TGG - chr8_4:16995667-16995686 Msa1316540:CDS 45.0%
GATGGATCTGGCAACAAGAT+TGG + chr8_4:16995701-16995720 None:intergenic 45.0%
TGAAGAGATGGGTGATTACC+GGG - chr8_4:16995802-16995821 Msa1316540:CDS 45.0%
! TGATGATTGGCGTCGAAGAA+TGG - chr8_4:16995862-16995881 Msa1316540:CDS 45.0%
AACTTCCATTATCCTCCACC+CGG - chr8_4:16995959-16995978 Msa1316540:CDS 45.0%
GGTGGAGGGCTCATGAATAA+TGG + chr8_4:16993031-16993050 None:intergenic 50.0%
! CTGGTGAATGCATTGGTGGA+GGG + chr8_4:16993045-16993064 None:intergenic 50.0%
! TCTGGTGAATGCATTGGTGG+AGG + chr8_4:16993046-16993065 None:intergenic 50.0%
CTCTCTGGTGAATGCATTGG+TGG + chr8_4:16993049-16993068 None:intergenic 50.0%
GGCTCTTCTTCCCAACCAAA+TGG + chr8_4:16993115-16993134 None:intergenic 50.0%
TTTGGTTGGGAAGAAGAGCC+AGG - chr8_4:16993115-16993134 Msa1316540:CDS 50.0%
!! GTGGTTGGTGGTGGCATTAT+TGG - chr8_4:16993442-16993461 Msa1316540:intron 50.0%
ATGGGTCAGTTATTCCGGGA+CGG + chr8_4:16994231-16994250 None:intergenic 50.0%
GTCAATTATACCGGGACGGA+GGG - chr8_4:16994860-16994879 Msa1316540:intron 50.0%
! CCACCACACTGTCCATTTTC+TGG + chr8_4:16995004-16995023 None:intergenic 50.0%
CCAGAAAATGGACAGTGTGG+TGG - chr8_4:16995001-16995020 Msa1316540:intron 50.0%
! ATCAAGAGCATGGGTGGCTA+TGG + chr8_4:16995353-16995372 None:intergenic 50.0%
ACGTCAGTTCTCGATGGATC+TGG + chr8_4:16995713-16995732 None:intergenic 50.0%
TTCACGGGTACCTAAAGAGC+AGG - chr8_4:16995769-16995788 Msa1316540:intron 50.0%
GCTGGCAGAGATGAAGAGAT+GGG - chr8_4:16995791-16995810 Msa1316540:CDS 50.0%
TCGTCTTTCATTCCAGTCGC+AGG + chr8_4:16995839-16995858 None:intergenic 50.0%
! TGATTGGCGTCGAAGAATGG+AGG - chr8_4:16995865-16995884 Msa1316540:CDS 50.0%
ATGTACTACTCCCTCCGTCC+CGG - chr8_4:16994214-16994233 Msa1316540:intron 55.0%
GTCAGTTATTCCGGGACGGA+GGG + chr8_4:16994227-16994246 None:intergenic 55.0%
GGTCAATTATACCGGGACGG+AGG - chr8_4:16994859-16994878 Msa1316540:intron 55.0%
! CGGAGGGAGTATAGCCAAGA+TGG - chr8_4:16994876-16994895 Msa1316540:intron 55.0%
TCTCTGCCAGCCTGCTCTTT+AGG + chr8_4:16995782-16995801 None:intergenic 55.0%
GGCTGGCAGAGATGAAGAGA+TGG - chr8_4:16995790-16995809 Msa1316540:CDS 55.0%
AGAGATGGGTGATTACCGGG+AGG - chr8_4:16995805-16995824 Msa1316540:CDS 55.0%
GGCTGACAGGACGTATGATG+AGG - chr8_4:16995892-16995911 Msa1316540:CDS 55.0%
GGTCAGTTATTCCGGGACGG+AGG + chr8_4:16994228-16994247 None:intergenic 60.0%
TGGCTATACTCCCTCCGTCC+CGG + chr8_4:16994873-16994892 None:intergenic 60.0%
CGGGTACCTAAAGAGCAGGC+TGG - chr8_4:16995773-16995792 Msa1316540:intron 60.0%
TCGCAGGTTGTTGCTCCTCC+CGG + chr8_4:16995823-16995842 None:intergenic 60.0%
GAGGAGCAACAACCTGCGAC+TGG - chr8_4:16995824-16995843 Msa1316540:CDS 60.0%
GCGTCGAAGAATGGAGGCGA+AGG - chr8_4:16995871-16995890 Msa1316540:CDS 60.0%
GAATGGAGGCGAAGGCTGAC+AGG - chr8_4:16995879-16995898 Msa1316540:CDS 60.0%
CTGGACCGGGTGGAGGATAA+TGG + chr8_4:16995967-16995986 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 16992983 16995991 16992983 ID=Msa1316540;Name=Msa1316540
chr8_4 mRNA 16992983 16995991 16992983 ID=Msa1316540-mRNA-1;Parent=Msa1316540;Name=Msa1316540-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|1|4|0|235
chr8_4 exon 16995783 16995991 16995783 ID=Msa1316540-mRNA-1:exon:6341;Parent=Msa1316540-mRNA-1
chr8_4 exon 16995584 16995761 16995584 ID=Msa1316540-mRNA-1:exon:6340;Parent=Msa1316540-mRNA-1
chr8_4 exon 16995425 16995544 16995425 ID=Msa1316540-mRNA-1:exon:6339;Parent=Msa1316540-mRNA-1
chr8_4 exon 16992983 16993183 16992983 ID=Msa1316540-mRNA-1:exon:6338;Parent=Msa1316540-mRNA-1
chr8_4 CDS 16995783 16995991 16995783 ID=Msa1316540-mRNA-1:cds;Parent=Msa1316540-mRNA-1
chr8_4 CDS 16995584 16995761 16995584 ID=Msa1316540-mRNA-1:cds;Parent=Msa1316540-mRNA-1
chr8_4 CDS 16995425 16995544 16995425 ID=Msa1316540-mRNA-1:cds;Parent=Msa1316540-mRNA-1
chr8_4 CDS 16992983 16993183 16992983 ID=Msa1316540-mRNA-1:cds;Parent=Msa1316540-mRNA-1
Gene Sequence

>Msa1316540

ATGGAAGCTTGTGAGGAAGAAAATGGCAAAAAGATACCAAAACTTCCATTATTCATGAGCCCTCCACCAATGCATTCACCAGAGAGATCAGGAACAAAAACTCCACCACTTCATATCACAGCATCAATACCATTTGGTTGGGAAGAAGAGCCAGGAAAACCAAGACCATGTACTGATCTTGTAACATTCTCAAATCCAACACTAGTCAAGTTGTTCATTGATACAAAAGTTCCATCACCTACAACAGTTTTGGATGGACCCTACAAAAAGGATTGTTGTGATTCCTTTGGTTTTGAAAGTGGGAAACTTGGGAGTTTGATTCTTAAGGAAGAAATGAGGGTAAAGAAAAAAGGGTGTTTTGGTAATTGGAGGAAAATGGATATTAAGGATAATGATAATGTGGTTGGTGGTGGCATTATTGGTTGTGACAAGAATGTGAAGACGAGGAAGAAGATAAAACATTATGGTAGCTTTGATAATCCATTTCATGCCAAGTCTCTTGTTTGGGCTGGCAGAGATGAAGAGATGGGTGATTACCGGGAGGAGCAACAACCTGCGACTGGAATGAAAGACGACGATGATGATTGGCGTCGAAGAATGGAGGCGAAGGCTGACAGGACGTATGATGAGGTTGCATGCATCAAACGAATGCTTGCAGAAACGATGCAGCGACTCAACTTCCATTATCCTCCACCCGGTCCAGAATGA

Protein sequence

>Msa1316540

MEACEEENGKKIPKLPLFMSPPPMHSPERSGTKTPPLHITASIPFGWEEEPGKPRPCTDLVTFSNPTLVKLFIDTKVPSPTTVLDGPYKKDCCDSFGFESGKLGSLILKEEMRVKKKGCFGNWRKMDIKDNDNVVGGGIIGCDKNVKTRKKIKHYGSFDNPFHAKSLVWAGRDEEMGDYREEQQPATGMKDDDDDWRRRMEAKADRTYDEVACIKRMLAETMQRLNFHYPPPGPE*