Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423300 | A0A072UEZ9 | 86.111 | 288 | 22 | 2 | 1 | 270 | 1 | 288 | 7.42e-167 | 472 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077010 | Msa1423300 | 0.838809 | 2.305759e-57 | -8.615850e-47 |
| Msa0609000 | Msa1423300 | 0.805049 | 1.610183e-49 | -8.615850e-47 |
| Msa0618930 | Msa1423300 | 0.805675 | 1.190265e-49 | -8.615850e-47 |
| Msa0720030 | Msa1423300 | 0.939657 | 8.789937e-100 | -8.615850e-47 |
| Msa0839200 | Msa1423300 | 0.929963 | 3.262161e-93 | -8.615850e-47 |
| Msa0126840 | Msa1423300 | 0.813988 | 1.936524e-51 | -8.615850e-47 |
| Msa0166750 | Msa1423300 | 0.803216 | 3.875781e-49 | -8.615850e-47 |
| Msa0167480 | Msa1423300 | 0.801378 | 9.260335e-49 | -8.615850e-47 |
| Msa1270620 | Msa1423300 | 0.802855 | 4.601543e-49 | -8.615850e-47 |
| Msa1331710 | Msa1423300 | 0.807556 | 4.771923e-50 | -8.615850e-47 |
| Msa1025940 | Msa1423300 | 0.809095 | 2.241377e-50 | -8.615850e-47 |
| Msa1083880 | Msa1423300 | 0.824692 | 7.033844e-54 | -8.615850e-47 |
| Msa0291520 | Msa1423300 | 0.806471 | 8.095903e-50 | -8.615850e-47 |
| Msa1179980 | Msa1423300 | 0.801069 | 1.071191e-48 | -8.615850e-47 |
| Msa0550570 | Msa1423300 | 0.806502 | 7.972470e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423300 | MtrunA17_Chr5g0410701 | 85.764 | 288 | 22 | 3 | 1 | 270 | 1 | 287 | 4.31e-168 | 466 |
| Msa1423300 | MtrunA17_Chr5g0410691 | 56.842 | 95 | 26 | 3 | 129 | 220 | 3 | 85 | 1.82e-22 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 81 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTATTAGAACAACGATTTC+TGG | 0.136302 | tig0025526:-63732 | Msa1423300:CDS |
| AACTCTGGTGTGTCGTATTC+TGG | 0.273236 | tig0025526:-64002 | Msa1423300:CDS |
| TCCAACTTTGAATCAATATC+AGG | 0.279193 | tig0025526:+64227 | None:intergenic |
| CATCCATATTCTAGAGAGTT+AGG | 0.302253 | tig0025526:-61544 | Msa1423300:three_prime_UTR |
| TTCTTTGATGCATACTTTGA+TGG | 0.305301 | tig0025526:-61215 | Msa1423300:three_prime_UTR |
| TGGGAGCAAATTAATCAATA+TGG | 0.309596 | tig0025526:-64059 | Msa1423300:CDS |
| TCACCTAACTCTCTAGAATA+TGG | 0.317659 | tig0025526:+61541 | None:intergenic |
| GGATCAATGCACATCAATTC+CGG | 0.320605 | tig0025526:-63892 | Msa1423300:CDS |
| AAAGCAACGGCAACGGTTGC+CGG | 0.332834 | tig0025526:-61438 | Msa1423300:three_prime_UTR |
| TTGAAATTTCAACTACTTCA+AGG | 0.362528 | tig0025526:-64354 | Msa1423300:intron |
| TAATGATTATACTGCGGAAA+AGG | 0.365046 | tig0025526:-63832 | Msa1423300:CDS |
| TATTTGCCTATTGTTAATAT+TGG | 0.367246 | tig0025526:-61288 | Msa1423300:three_prime_UTR |
| GGTTGCTCTGTTGGTGGGTC+GGG | 0.370289 | tig0025526:-63870 | Msa1423300:CDS |
| TCTGAGCCACCAATTTGTTC+AGG | 0.371252 | tig0025526:+62114 | None:intergenic |
| CCTTGTTTAGATTCAACAAT+TGG | 0.380847 | tig0025526:-64191 | Msa1423300:intron |
| GGTAATAAAGTGTTGATTCC+TGG | 0.383675 | tig0025526:-63810 | Msa1423300:CDS |
| TATCTTGCTGAACAATCAAT+TGG | 0.405329 | tig0025526:-61628 | Msa1423300:CDS |
| AATCAACAATATGCAGCAAC+TGG | 0.408282 | tig0025526:-64029 | Msa1423300:CDS |
| GATTCTGAACCTGAACAAAT+TGG | 0.413772 | tig0025526:-62123 | Msa1423300:CDS |
| TGGGTAAAGATGGAGATCTA+TGG | 0.416837 | tig0025526:-64579 | Msa1423300:CDS |
| GGGTTGCTCTGTTGGTGGGT+CGG | 0.417492 | tig0025526:-63871 | Msa1423300:CDS |
| TTGCCTATTGTTAATATTGG+TGG | 0.420192 | tig0025526:-61285 | Msa1423300:three_prime_UTR |
| CTGAATGCTTGGTATTCAGC+TGG | 0.428215 | tig0025526:-62072 | Msa1423300:CDS |
| ATTCCACCAATATTAACAAT+AGG | 0.441685 | tig0025526:+61282 | None:intergenic |
| TATTCAGCTGGCTTCCATAC+CGG | 0.442511 | tig0025526:-62060 | Msa1423300:CDS |
| TCATAATACTGACATTCTCT+TGG | 0.445582 | tig0025526:+61489 | None:intergenic |
| GAGAATGTCAGTATTATGAT+AGG | 0.446225 | tig0025526:-61485 | Msa1423300:three_prime_UTR |
| TCAATTCCGGGTTGCTCTGT+TGG | 0.450395 | tig0025526:-63879 | Msa1423300:CDS |
| TCTGTTGGTGGGTCGGGTGT+TGG | 0.461198 | tig0025526:-63864 | Msa1423300:CDS |
| ATTCCGGGTTGCTCTGTTGG+TGG | 0.463844 | tig0025526:-63876 | Msa1423300:CDS |
| TTACTGCTGTTCTGAATGCT+TGG | 0.464273 | tig0025526:-62083 | Msa1423300:CDS |
| CTGCCCTTGCTACCAGCCTC+AGG | 0.464534 | tig0025526:+61394 | None:intergenic |
| CAACATGAACACACAACATT+CGG | 0.469002 | tig0025526:+63939 | None:intergenic |
| GATCAATGCACATCAATTCC+GGG | 0.470986 | tig0025526:-63891 | Msa1423300:CDS |
| TCAGCAAAAGATGAAAATCA+TGG | 0.472024 | tig0025526:+61366 | None:intergenic |
| TTCCGGGTTGCTCTGTTGGT+GGG | 0.489093 | tig0025526:-63875 | Msa1423300:CDS |
| AAGTGTGTGTGCTCAAACAA+TGG | 0.490106 | tig0025526:-64599 | Msa1423300:exon |
| TCCTGATATTGATTCAAAGT+TGG | 0.501063 | tig0025526:-64228 | Msa1423300:CDS |
| CGACGCAATCTCTTCTTACA+AGG | 0.504755 | tig0025526:-64527 | Msa1423300:intron |
| ATTCAGCTGGCTTCCATACC+GGG | 0.504838 | tig0025526:-62059 | Msa1423300:CDS |
| GACACCTGAGGCTGGTAGCA+AGG | 0.507324 | tig0025526:-61398 | Msa1423300:three_prime_UTR |
| AAATTAATCAATATGGTGGT+TGG | 0.517556 | tig0025526:-64052 | Msa1423300:CDS |
| AATGATTATACTGCGGAAAA+GGG | 0.519609 | tig0025526:-63831 | Msa1423300:CDS |
| GCTCAAACAATGGGTAAAGA+TGG | 0.521554 | tig0025526:-64589 | Msa1423300:exon |
| GGAGATGTTAATGTAAATGA+AGG | 0.522577 | tig0025526:-63711 | Msa1423300:intron |
| CTTTGATGGAAGTTATGTCA+TGG | 0.523078 | tig0025526:-61201 | Msa1423300:three_prime_UTR |
| CTAACTCTCTAGAATATGGA+TGG | 0.524846 | tig0025526:+61545 | None:intergenic |
| ATACTCTTAAACTGTGTCAT+GGG | 0.525262 | tig0025526:+61462 | None:intergenic |
| CATACTCTTAAACTGTGTCA+TGG | 0.532568 | tig0025526:+61461 | None:intergenic |
| GGGTAAAGATGGAGATCTAT+GGG | 0.534204 | tig0025526:-64578 | Msa1423300:CDS |
| CACTTGAAGATCTCTCATCT+AGG | 0.539768 | tig0025526:+61583 | None:intergenic |
| GCATCAAAGAAGTTGTTGAC+AGG | 0.543363 | tig0025526:+61227 | None:intergenic |
| TCCGCAGTATAATCATTACA+AGG | 0.549192 | tig0025526:+63837 | None:intergenic |
| AAGATACGTGAGATGGCGAT+GGG | 0.549503 | tig0025526:-63777 | Msa1423300:CDS |
| GCAGCAACTGGGTTGAACTC+TGG | 0.568033 | tig0025526:-64017 | Msa1423300:CDS |
| TCTGAACCTGAACAAATTGG+TGG | 0.569521 | tig0025526:-62120 | Msa1423300:CDS |
| GGGTTTATGTACAAACTCGA+AGG | 0.571239 | tig0025526:-64637 | None:intergenic |
| ACACCTGAGGCTGGTAGCAA+GGG | 0.571778 | tig0025526:-61397 | Msa1423300:three_prime_UTR |
| CCAATTGTTGAATCTAAACA+AGG | 0.581225 | tig0025526:+64191 | None:intergenic |
| GGTTTATGTACAAACTCGAA+GGG | 0.581755 | tig0025526:-64636 | None:intergenic |
| GACCCACCAACAGAGCAACC+CGG | 0.586706 | tig0025526:+63873 | None:intergenic |
| TCGTCTTCAACTACGACAGC+CGG | 0.587239 | tig0025526:+61419 | None:intergenic |
| TGCTGAGTACTATGAACTTG+AGG | 0.587433 | tig0025526:-64099 | Msa1423300:CDS |
| TTGAAGACGACACCTGAGGC+TGG | 0.591141 | tig0025526:-61406 | Msa1423300:three_prime_UTR |
| GTGTTGATTCCTGGTGGAGA+TGG | 0.591707 | tig0025526:-63801 | Msa1423300:CDS |
| TAAGATACGTGAGATGGCGA+TGG | 0.591727 | tig0025526:-63778 | Msa1423300:CDS |
| ATCAACAATATGCAGCAACT+GGG | 0.593424 | tig0025526:-64028 | Msa1423300:CDS |
| GATACGTGAGATGGCGATGG+GGG | 0.607202 | tig0025526:-63775 | Msa1423300:CDS |
| AGTGTGTGTGCTCAAACAAT+GGG | 0.608252 | tig0025526:-64598 | Msa1423300:exon |
| GAGCAAATTAATCAATATGG+TGG | 0.611784 | tig0025526:-64056 | Msa1423300:CDS |
| TAACTCTCTAGAATATGGAT+GGG | 0.614522 | tig0025526:+61546 | None:intergenic |
| GAGTATGAAAGCAACGGCAA+CGG | 0.620078 | tig0025526:-61445 | Msa1423300:three_prime_UTR |
| CGTATCTTACCATCTCCACC+AGG | 0.620615 | tig0025526:+63792 | None:intergenic |
| AGATGGTAAGATACGTGAGA+TGG | 0.625345 | tig0025526:-63784 | Msa1423300:CDS |
| ACAAATTGGTGGCTCAGAGA+CGG | 0.626621 | tig0025526:-62109 | Msa1423300:CDS |
| GTTTAAGAGTATGAAAGCAA+CGG | 0.636754 | tig0025526:-61451 | Msa1423300:three_prime_UTR |
| CTAGATGAGAGATCTTCAAG+TGG | 0.639257 | tig0025526:-61582 | Msa1423300:three_prime_UTR |
| AATAAAGTGTTGATTCCTGG+TGG | 0.645556 | tig0025526:-63807 | Msa1423300:CDS |
| AGATACGTGAGATGGCGATG+GGG | 0.695008 | tig0025526:-63776 | Msa1423300:CDS |
| GTAGTTGAAGACGACACCTG+AGG | 0.710279 | tig0025526:-61410 | Msa1423300:three_prime_UTR |
| ACCTTGTAATGATTATACTG+CGG | 0.710870 | tig0025526:-63838 | Msa1423300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAATTTTTTGAAATTAAAT+TGG | + | tig0025526:61481-61500 | None:intergenic | 10.0% |
| !!! | AACTTTATGTTTTTTTTTAA+GGG | - | tig0025526:64465-64484 | Msa1423300:intron | 10.0% |
| !!! | TGTTTTATTGTTGTAATTTT+GGG | + | tig0025526:62611-62630 | None:intergenic | 15.0% |
| !!! | TGATTAATCAATTGATTTTT+TGG | - | tig0025526:63216-63235 | Msa1423300:intron | 15.0% |
| !!! | GATTAATCAATTGATTTTTT+GGG | - | tig0025526:63217-63236 | Msa1423300:intron | 15.0% |
| !!! | TACTTTTTTGTATAGATAAA+TGG | - | tig0025526:63568-63587 | Msa1423300:intron | 15.0% |
| !!! | CAACTTTATGTTTTTTTTTA+AGG | - | tig0025526:64464-64483 | Msa1423300:intron | 15.0% |
| !!! | ACTTTATGTTTTTTTTTAAG+GGG | - | tig0025526:64466-64485 | Msa1423300:intron | 15.0% |
| !!! | GAAATTAAGTTGAATTGAAA+GGG | + | tig0025526:61349-61368 | None:intergenic | 20.0% |
| !!! | TGAAATTAAGTTGAATTGAA+AGG | + | tig0025526:61350-61369 | None:intergenic | 20.0% |
| !! | TATATTCAATAACAAAAGCA+TGG | + | tig0025526:62150-62169 | None:intergenic | 20.0% |
| !!! | GTTGTTTTCTTTAAAATGAA+AGG | - | tig0025526:62269-62288 | Msa1423300:intron | 20.0% |
| !!! | CTGTTTTATTGTTGTAATTT+TGG | + | tig0025526:62612-62631 | None:intergenic | 20.0% |
| !! | TCAAAATATAGGAAATGATA+GGG | + | tig0025526:63162-63181 | None:intergenic | 20.0% |
| !! | ATCAAAATATAGGAAATGAT+AGG | + | tig0025526:63163-63182 | None:intergenic | 20.0% |
| !!! | TTATGTAATTTGATGATTGA+AGG | - | tig0025526:63344-63363 | Msa1423300:intron | 20.0% |
| !! | GCATATTAAACATTTAAGAA+CGG | + | tig0025526:63455-63474 | None:intergenic | 20.0% |
| !! | TAATTCAGATAAAAAGAAAG+AGG | - | tig0025526:63658-63677 | Msa1423300:intron | 20.0% |
| !!! | TATTTTCTTGTATAACAATG+AGG | + | tig0025526:63810-63829 | None:intergenic | 20.0% |
| !! | ACAAAATAAAAATACGTATC+TGG | - | tig0025526:63887-63906 | Msa1423300:CDS | 20.0% |
| !! | TATTTGCCTATTGTTAATAT+TGG | - | tig0025526:64515-64534 | Msa1423300:intron | 20.0% |
| ! | TTTCTGCTGAATAAGAAAAA+GGG | + | tig0025526:61374-61393 | None:intergenic | 25.0% |
| !! | TTTTCTGCTGAATAAGAAAA+AGG | + | tig0025526:61375-61394 | None:intergenic | 25.0% |
| !!! | TTCTGATTCTTGTTTGTTTT+TGG | + | tig0025526:61410-61429 | None:intergenic | 25.0% |
| !! | TCAACGTTTTCTTCAATTAT+TGG | + | tig0025526:61433-61452 | None:intergenic | 25.0% |
| ! | TTGAAATTTCAACTACTTCA+AGG | - | tig0025526:61449-61468 | Msa1423300:three_prime_UTR | 25.0% |
| ! | AAACTCAAAATGAGCATAAT+GGG | - | tig0025526:61640-61659 | Msa1423300:intron | 25.0% |
| ! | AAATTAATCAATATGGTGGT+TGG | - | tig0025526:61751-61770 | Msa1423300:intron | 25.0% |
| !!! | TTTCTTTAAAATGAAAGGAC+CGG | - | tig0025526:62274-62293 | Msa1423300:intron | 25.0% |
| ! | TGTTCATATAACCATAAATC+CGG | + | tig0025526:62296-62315 | None:intergenic | 25.0% |
| ! | TATTACAGAAGATATACGTT+AGG | - | tig0025526:62583-62602 | Msa1423300:intron | 25.0% |
| ! | GATTGATTATTAATTGACTG+TGG | - | tig0025526:62660-62679 | Msa1423300:intron | 25.0% |
| !! | TGATTAGTCAGTTATCATTA+GGG | + | tig0025526:62761-62780 | None:intergenic | 25.0% |
| !! | TTGATTAGTCAGTTATCATT+AGG | + | tig0025526:62762-62781 | None:intergenic | 25.0% |
| ! | TCCATGATATAAGGAATTTA+GGG | + | tig0025526:62811-62830 | None:intergenic | 25.0% |
| ! | TTCCATGATATAAGGAATTT+AGG | + | tig0025526:62812-62831 | None:intergenic | 25.0% |
| ! | TCATAAATCAATTCCTCATT+AGG | - | tig0025526:62940-62959 | Msa1423300:intron | 25.0% |
| ! | TTATTAGATCTTTCCTTCTT+AGG | - | tig0025526:63479-63498 | Msa1423300:intron | 25.0% |
| ! | ATTAATCTTCACTAAAACAG+AGG | + | tig0025526:63963-63982 | None:intergenic | 25.0% |
| ! | ATTCCACCAATATTAACAAT+AGG | + | tig0025526:64524-64543 | None:intergenic | 25.0% |
| !! | AGCTATAACAAATTTTCACA+TGG | + | tig0025526:64547-64566 | None:intergenic | 25.0% |
| GAATTTGATTGAGTAGGAAA+AGG | + | tig0025526:61327-61346 | None:intergenic | 30.0% | |
| TTCTGCTGAATAAGAAAAAG+GGG | + | tig0025526:61373-61392 | None:intergenic | 30.0% | |
| !! | TCCTGATATTGATTCAAAGT+TGG | - | tig0025526:61575-61594 | Msa1423300:three_prime_UTR | 30.0% |
| TCCAACTTTGAATCAATATC+AGG | + | tig0025526:61579-61598 | None:intergenic | 30.0% | |
| CCAATTGTTGAATCTAAACA+AGG | + | tig0025526:61615-61634 | None:intergenic | 30.0% | |
| ! | CCTTGTTTAGATTCAACAAT+TGG | - | tig0025526:61612-61631 | Msa1423300:CDS | 30.0% |
| GAAACTCAAAATGAGCATAA+TGG | - | tig0025526:61639-61658 | Msa1423300:intron | 30.0% | |
| AATGGGTATTCTTATGAACA+AGG | - | tig0025526:61657-61676 | Msa1423300:intron | 30.0% | |
| ACTATGAACTTGAGGAAAAA+AGG | - | tig0025526:61712-61731 | Msa1423300:intron | 30.0% | |
| AGGAAAAAAGGTTGAAGATT+TGG | - | tig0025526:61724-61743 | Msa1423300:intron | 30.0% | |
| GGAAAAAAGGTTGAAGATTT+GGG | - | tig0025526:61725-61744 | Msa1423300:intron | 30.0% | |
| TGGGAGCAAATTAATCAATA+TGG | - | tig0025526:61744-61763 | Msa1423300:intron | 30.0% | |
| GAGCAAATTAATCAATATGG+TGG | - | tig0025526:61747-61766 | Msa1423300:intron | 30.0% | |
| ACCTTGTAATGATTATACTG+CGG | - | tig0025526:61965-61984 | Msa1423300:intron | 30.0% | |
| TAATGATTATACTGCGGAAA+AGG | - | tig0025526:61971-61990 | Msa1423300:intron | 30.0% | |
| AATGATTATACTGCGGAAAA+GGG | - | tig0025526:61972-61991 | Msa1423300:intron | 30.0% | |
| ACTATTAGAACAACGATTTC+TGG | - | tig0025526:62071-62090 | Msa1423300:CDS | 30.0% | |
| GGAGATGTTAATGTAAATGA+AGG | - | tig0025526:62092-62111 | Msa1423300:CDS | 30.0% | |
| !!! | TAAGAGGTTTTGTTGTAACA+AGG | - | tig0025526:62221-62240 | Msa1423300:intron | 30.0% |
| !!! | ATAGCTACTTTTTGTTGTTC+TGG | - | tig0025526:62361-62380 | Msa1423300:intron | 30.0% |
| TTTGCCTTCTGATATTCTTT+AGG | - | tig0025526:62413-62432 | Msa1423300:intron | 30.0% | |
| CAAACCTAAAGAATATCAGA+AGG | + | tig0025526:62420-62439 | None:intergenic | 30.0% | |
| ! | TTCTTTAGGTTTGAATGCTA+AGG | - | tig0025526:62427-62446 | Msa1423300:intron | 30.0% |
| !!! | AAGGATTTTTTATGTGATCC+TGG | - | tig0025526:62446-62465 | Msa1423300:intron | 30.0% |
| AGTAGTACATGCATATTGTT+AGG | - | tig0025526:62509-62528 | Msa1423300:intron | 30.0% | |
| ! | GAATTTAGAGCAATAGAGAA+AGG | - | tig0025526:62635-62654 | Msa1423300:intron | 30.0% |
| TCAGTTATCATTAGGGATTA+GGG | + | tig0025526:62754-62773 | None:intergenic | 30.0% | |
| ACCCTAAATTCCTTATATCA+TGG | - | tig0025526:62807-62826 | Msa1423300:intron | 30.0% | |
| ! | TGGAAAGTTTATTCTAGAAG+GGG | + | tig0025526:62898-62917 | None:intergenic | 30.0% |
| ! | GTGGAAAGTTTATTCTAGAA+GGG | + | tig0025526:62899-62918 | None:intergenic | 30.0% |
| TGTGGAAAGTTTATTCTAGA+AGG | + | tig0025526:62900-62919 | None:intergenic | 30.0% | |
| AGAATAAACTTTCCACACTT+TGG | - | tig0025526:62903-62922 | Msa1423300:intron | 30.0% | |
| GAATAAACTTTCCACACTTT+GGG | - | tig0025526:62904-62923 | Msa1423300:intron | 30.0% | |
| TGAGCAATTCTGTTATAAGA+GGG | + | tig0025526:63110-63129 | None:intergenic | 30.0% | |
| GATAGGGAAATAATATGACA+TGG | + | tig0025526:63146-63165 | None:intergenic | 30.0% | |
| !! | CAGTGGTGTTATCAAAATAT+AGG | + | tig0025526:63173-63192 | None:intergenic | 30.0% |
| ACCAAATACGAAGATATTCT+TGG | - | tig0025526:63595-63614 | Msa1423300:intron | 30.0% | |
| CCAAATACGAAGATATTCTT+GGG | - | tig0025526:63596-63615 | Msa1423300:intron | 30.0% | |
| TTTGACAAAAACTTACTTCC+CGG | + | tig0025526:63765-63784 | None:intergenic | 30.0% | |
| AAAACAGAGGTTAAAGAGTT+CGG | + | tig0025526:63950-63969 | None:intergenic | 30.0% | |
| TCAATGGTTATACGAAAGAT+AGG | + | tig0025526:64137-64156 | None:intergenic | 30.0% | |
| TGTTATCATCATAGCTTCAA+TGG | + | tig0025526:64153-64172 | None:intergenic | 30.0% | |
| ATTGAAGCTATGATGATAAC+AGG | - | tig0025526:64152-64171 | Msa1423300:intron | 30.0% | |
| TATCTTGCTGAACAATCAAT+TGG | - | tig0025526:64175-64194 | Msa1423300:intron | 30.0% | |
| !! | TAACTCTCTAGAATATGGAT+GGG | + | tig0025526:64260-64279 | None:intergenic | 30.0% |
| TCATAATACTGACATTCTCT+TGG | + | tig0025526:64317-64336 | None:intergenic | 30.0% | |
| GAGAATGTCAGTATTATGAT+AGG | - | tig0025526:64318-64337 | Msa1423300:intron | 30.0% | |
| ATACTCTTAAACTGTGTCAT+GGG | + | tig0025526:64344-64363 | None:intergenic | 30.0% | |
| ! | GTTTAAGAGTATGAAAGCAA+CGG | - | tig0025526:64352-64371 | Msa1423300:intron | 30.0% |
| TCAGCAAAAGATGAAAATCA+TGG | + | tig0025526:64440-64459 | None:intergenic | 30.0% | |
| TTGCCTATTGTTAATATTGG+TGG | - | tig0025526:64518-64537 | Msa1423300:intron | 30.0% | |
| TTCTTTGATGCATACTTTGA+TGG | - | tig0025526:64588-64607 | Msa1423300:exon | 30.0% | |
| GAAAGGGAATTTGATTGAGT+AGG | + | tig0025526:61333-61352 | None:intergenic | 35.0% | |
| AATCAACAATATGCAGCAAC+TGG | - | tig0025526:61774-61793 | Msa1423300:intron | 35.0% | |
| ATCAACAATATGCAGCAACT+GGG | - | tig0025526:61775-61794 | Msa1423300:intron | 35.0% | |
| CAACATGAACACACAACATT+CGG | + | tig0025526:61867-61886 | None:intergenic | 35.0% | |
| ! | ACAGCACATTGACTAAAACA+CGG | + | tig0025526:61891-61910 | None:intergenic | 35.0% |
| TCCGCAGTATAATCATTACA+AGG | + | tig0025526:61969-61988 | None:intergenic | 35.0% | |
| !! | GGTAATAAAGTGTTGATTCC+TGG | - | tig0025526:61993-62012 | Msa1423300:intron | 35.0% |
| !! | AATAAAGTGTTGATTCCTGG+TGG | - | tig0025526:61996-62015 | Msa1423300:intron | 35.0% |
| ! | CTTAAGATTGATGCTCTAAG+AGG | - | tig0025526:62205-62224 | Msa1423300:intron | 35.0% |
| AAATGAAAGGACCGGATTTA+TGG | - | tig0025526:62282-62301 | Msa1423300:intron | 35.0% | |
| GTCAGTTATCATTAGGGATT+AGG | + | tig0025526:62755-62774 | None:intergenic | 35.0% | |
| ! | GATATAAGGAATTTAGGGTG+AGG | + | tig0025526:62806-62825 | None:intergenic | 35.0% |
| GCAACTGTTTCCATGATATA+AGG | + | tig0025526:62820-62839 | None:intergenic | 35.0% | |
| GTGAGCAATTCTGTTATAAG+AGG | + | tig0025526:63111-63130 | None:intergenic | 35.0% | |
| TATGACATGGAAGAGATTGA+GGG | + | tig0025526:63133-63152 | None:intergenic | 35.0% | |
| ATATGACATGGAAGAGATTG+AGG | + | tig0025526:63134-63153 | None:intergenic | 35.0% | |
| TTCAACATATGCAAGCACAA+AGG | + | tig0025526:63281-63300 | None:intergenic | 35.0% | |
| CATATGTTGAAATTGTGTCC+TGG | - | tig0025526:63290-63309 | Msa1423300:intron | 35.0% | |
| GCAGAATATAACAAAACACC+AGG | + | tig0025526:63311-63330 | None:intergenic | 35.0% | |
| ! | TTTGAGTTCTGATTTAGCCA+TGG | - | tig0025526:63373-63392 | Msa1423300:intron | 35.0% |
| ATAGCATGCTTCTACAAACA+TGG | + | tig0025526:63413-63432 | None:intergenic | 35.0% | |
| ! | TGTTTGTAGAAGCATGCTAT+TGG | - | tig0025526:63413-63432 | Msa1423300:intron | 35.0% |
| GATCTTTCCTTCTTAGGTTT+AGG | - | tig0025526:63485-63504 | Msa1423300:intron | 35.0% | |
| CAAATGACCTAAACCTAAGA+AGG | + | tig0025526:63495-63514 | None:intergenic | 35.0% | |
| CTTCTTAGGTTTAGGTCATT+TGG | - | tig0025526:63493-63512 | Msa1423300:intron | 35.0% | |
| CAAAAAAGTAAAGCCACTGA+AGG | + | tig0025526:63558-63577 | None:intergenic | 35.0% | |
| CCCAAGAATATCTTCGTATT+TGG | + | tig0025526:63599-63618 | None:intergenic | 35.0% | |
| GATTCTGAACCTGAACAAAT+TGG | - | tig0025526:63680-63699 | Msa1423300:intron | 35.0% | |
| AATACGTATCTGGATTGTTG+TGG | - | tig0025526:63897-63916 | Msa1423300:CDS | 35.0% | |
| GATTGTTGTGGCATTTAAGT+AGG | - | tig0025526:63909-63928 | Msa1423300:intron | 35.0% | |
| !! | CTAACTCTCTAGAATATGGA+TGG | + | tig0025526:64261-64280 | None:intergenic | 35.0% |
| ! | CATCCATATTCTAGAGAGTT+AGG | - | tig0025526:64259-64278 | Msa1423300:intron | 35.0% |
| !! | TCACCTAACTCTCTAGAATA+TGG | + | tig0025526:64265-64284 | None:intergenic | 35.0% |
| CATACTCTTAAACTGTGTCA+TGG | + | tig0025526:64345-64364 | None:intergenic | 35.0% | |
| ! | CAACTTTATGCTTTTGTGGA+TGG | - | tig0025526:64491-64510 | Msa1423300:intron | 35.0% |
| CTTTGATGGAAGTTATGTCA+TGG | - | tig0025526:64602-64621 | Msa1423300:exon | 35.0% | |
| AAGTGTGTGTGCTCAAACAA+TGG | - | tig0025526:61204-61223 | Msa1423300:three_prime_UTR | 40.0% | |
| AGTGTGTGTGCTCAAACAAT+GGG | - | tig0025526:61205-61224 | Msa1423300:three_prime_UTR | 40.0% | |
| GCTCAAACAATGGGTAAAGA+TGG | - | tig0025526:61214-61233 | Msa1423300:three_prime_UTR | 40.0% | |
| TGGGTAAAGATGGAGATCTA+TGG | - | tig0025526:61224-61243 | Msa1423300:three_prime_UTR | 40.0% | |
| GGGTAAAGATGGAGATCTAT+GGG | - | tig0025526:61225-61244 | Msa1423300:three_prime_UTR | 40.0% | |
| AGGTGAAGAGAAGAGAAGAA+AGG | + | tig0025526:61307-61326 | None:intergenic | 40.0% | |
| TGCTGAGTACTATGAACTTG+AGG | - | tig0025526:61704-61723 | Msa1423300:intron | 40.0% | |
| !!! | GTGTTTTAGTCAATGTGCTG+TGG | - | tig0025526:61890-61909 | Msa1423300:intron | 40.0% |
| GGATCAATGCACATCAATTC+CGG | - | tig0025526:61911-61930 | Msa1423300:intron | 40.0% | |
| GATCAATGCACATCAATTCC+GGG | - | tig0025526:61912-61931 | Msa1423300:intron | 40.0% | |
| AGATGGTAAGATACGTGAGA+TGG | - | tig0025526:62019-62038 | Msa1423300:intron | 40.0% | |
| CACTCTCATGCTCATAAATG+CGG | - | tig0025526:62174-62193 | Msa1423300:intron | 40.0% | |
| TCAGTGCACAAAATAGATCC+AGG | + | tig0025526:62467-62486 | None:intergenic | 40.0% | |
| ACTGTGGAATGTTTACAGAG+AGG | - | tig0025526:62676-62695 | Msa1423300:intron | 40.0% | |
| CTGTGGAATGTTTACAGAGA+GGG | - | tig0025526:62677-62696 | Msa1423300:intron | 40.0% | |
| AATCAATCCTCACACACAAC+TGG | - | tig0025526:62840-62859 | Msa1423300:intron | 40.0% | |
| ! | TATTCTAGAAGGGGCAAAAG+CGG | + | tig0025526:62889-62908 | None:intergenic | 40.0% |
| AGAGTTTCATCTCTTCTCTG+AGG | + | tig0025526:63024-63043 | None:intergenic | 40.0% | |
| AGTTAGTAACCGCTTTGGTT+GGG | + | tig0025526:63052-63071 | None:intergenic | 40.0% | |
| TAACACCACTGTCTACCTAA+TGG | - | tig0025526:63182-63201 | Msa1423300:intron | 40.0% | |
| ATCAGTTGCACAAGTCCATT+AGG | + | tig0025526:63200-63219 | None:intergenic | 40.0% | |
| GGACACTCAAATGAGAATGT+AGG | + | tig0025526:63243-63262 | None:intergenic | 40.0% | |
| CAAAGGTCGCAAAATGTGTT+AGG | + | tig0025526:63264-63283 | None:intergenic | 40.0% | |
| TGGAATCATGACTAGTACCA+TGG | + | tig0025526:63393-63412 | None:intergenic | 40.0% | |
| TAAAGCCACTGAAGGACAAA+AGG | + | tig0025526:63550-63569 | None:intergenic | 40.0% | |
| TCTGAACCTGAACAAATTGG+TGG | - | tig0025526:63683-63702 | Msa1423300:intron | 40.0% | |
| ! | TTACTGCTGTTCTGAATGCT+TGG | - | tig0025526:63720-63739 | Msa1423300:CDS | 40.0% |
| CAAAAACTTACTTCCCGGTA+TGG | + | tig0025526:63760-63779 | None:intergenic | 40.0% | |
| CTAGCATGTTGTTATGTAGC+AGG | - | tig0025526:63833-63852 | Msa1423300:CDS | 40.0% | |
| CACTTGAAGATCTCTCATCT+AGG | + | tig0025526:64223-64242 | None:intergenic | 40.0% | |
| CTAGATGAGAGATCTTCAAG+TGG | - | tig0025526:64221-64240 | Msa1423300:CDS | 40.0% | |
| ! | GGAGCAACTTTATGCTTTTG+TGG | - | tig0025526:64487-64506 | Msa1423300:intron | 40.0% |
| GCATCAAAGAAGTTGTTGAC+AGG | + | tig0025526:64579-64598 | None:intergenic | 40.0% | |
| CGACGCAATCTCTTCTTACA+AGG | - | tig0025526:61276-61295 | Msa1423300:three_prime_UTR | 45.0% | |
| AACTCTGGTGTGTCGTATTC+TGG | - | tig0025526:61801-61820 | Msa1423300:intron | 45.0% | |
| TAAGATACGTGAGATGGCGA+TGG | - | tig0025526:62025-62044 | Msa1423300:intron | 45.0% | |
| AAGATACGTGAGATGGCGAT+GGG | - | tig0025526:62026-62045 | Msa1423300:intron | 45.0% | |
| CAAGCTTTCGACTCAGTTAG+AGG | + | tig0025526:62322-62341 | None:intergenic | 45.0% | |
| GAACTAAAATCCAACGCTCC+TGG | - | tig0025526:62383-62402 | Msa1423300:intron | 45.0% | |
| ! | AAAAATGAAGCCAGGAGCGT+TGG | + | tig0025526:62396-62415 | None:intergenic | 45.0% |
| CAGAAGGCAAAAATGAAGCC+AGG | + | tig0025526:62404-62423 | None:intergenic | 45.0% | |
| ! | TTGTGCACTGATAGATCTGC+TGG | - | tig0025526:62476-62495 | Msa1423300:intron | 45.0% |
| !! | CCTAGCTCTGGTAAGAATCA+AGG | + | tig0025526:62710-62729 | None:intergenic | 45.0% |
| CCTTGATTCTTACCAGAGCT+AGG | - | tig0025526:62707-62726 | Msa1423300:intron | 45.0% | |
| TACCAGAGCTAGGATCCTTT+AGG | - | tig0025526:62717-62736 | Msa1423300:intron | 45.0% | |
| TTCCTAAAGGATCCTAGCTC+TGG | + | tig0025526:62722-62741 | None:intergenic | 45.0% | |
| ! | AATTTAGGGTGAGGTTGAGC+GGG | + | tig0025526:62797-62816 | None:intergenic | 45.0% |
| ! | GAATTTAGGGTGAGGTTGAG+CGG | + | tig0025526:62798-62817 | None:intergenic | 45.0% |
| AGAGATCGTGACTCAGCAAA+CGG | + | tig0025526:62967-62986 | None:intergenic | 45.0% | |
| CATTTGCGCTGAGATTACAG+AGG | + | tig0025526:62999-63018 | None:intergenic | 45.0% | |
| CAGTTAGTAACCGCTTTGGT+TGG | + | tig0025526:63053-63072 | None:intergenic | 45.0% | |
| TTCGCAGTTAGTAACCGCTT+TGG | + | tig0025526:63057-63076 | None:intergenic | 45.0% | |
| GGAGAACGATAGAGTGGAAA+TGG | + | tig0025526:63089-63108 | None:intergenic | 45.0% | |
| TAAGAGGGAGAACGATAGAG+TGG | + | tig0025526:63095-63114 | None:intergenic | 45.0% | |
| CAAGTCCATTAGGTAGACAG+TGG | + | tig0025526:63190-63209 | None:intergenic | 45.0% | |
| ! | ACACACCTTTTGTCCTTCAG+TGG | - | tig0025526:63542-63561 | Msa1423300:intron | 45.0% |
| ! | TCTGAGCCACCAATTTGTTC+AGG | + | tig0025526:63692-63711 | None:intergenic | 45.0% |
| ! | ACAAATTGGTGGCTCAGAGA+CGG | - | tig0025526:63694-63713 | Msa1423300:intron | 45.0% |
| CTGAATGCTTGGTATTCAGC+TGG | - | tig0025526:63731-63750 | Msa1423300:CDS | 45.0% | |
| ! | TATTCAGCTGGCTTCCATAC+CGG | - | tig0025526:63743-63762 | Msa1423300:CDS | 45.0% |
| GAGTATGAAAGCAACGGCAA+CGG | - | tig0025526:64358-64377 | Msa1423300:CDS | 45.0% | |
| !!! | TTTATTTTGATTTATATAAT+AGG | - | tig0025526:61529-61548 | Msa1423300:three_prime_UTR | 5.0% |
| !!! | TTATTTTGATTTATATAATA+GGG | - | tig0025526:61530-61549 | Msa1423300:three_prime_UTR | 5.0% |
| TCAATTCCGGGTTGCTCTGT+TGG | - | tig0025526:61924-61943 | Msa1423300:intron | 50.0% | |
| !! | GTGTTGATTCCTGGTGGAGA+TGG | - | tig0025526:62002-62021 | Msa1423300:intron | 50.0% |
| CGTATCTTACCATCTCCACC+AGG | + | tig0025526:62014-62033 | None:intergenic | 50.0% | |
| AGATACGTGAGATGGCGATG+GGG | - | tig0025526:62027-62046 | Msa1423300:intron | 50.0% | |
| AGGGAGCAGTAGCTTCCTAA+AGG | + | tig0025526:62735-62754 | None:intergenic | 50.0% | |
| TGTAGCACCAGTTGTGTGTG+AGG | + | tig0025526:62850-62869 | None:intergenic | 50.0% | |
| ACTCAGCTACACCCAAAGTG+TGG | + | tig0025526:62918-62937 | None:intergenic | 50.0% | |
| CTCAGCAAACGGTCCTAATG+AGG | + | tig0025526:62956-62975 | None:intergenic | 50.0% | |
| CTCTCTCTACCCAACCAAAG+CGG | - | tig0025526:63040-63059 | Msa1423300:intron | 50.0% | |
| ! | ATTCAGCTGGCTTCCATACC+GGG | - | tig0025526:63744-63763 | Msa1423300:CDS | 50.0% |
| TCGTCTTCAACTACGACAGC+CGG | + | tig0025526:64387-64406 | None:intergenic | 50.0% | |
| GTAGTTGAAGACGACACCTG+AGG | - | tig0025526:64393-64412 | Msa1423300:CDS | 50.0% | |
| ! | GCAGCAACTGGGTTGAACTC+TGG | - | tig0025526:61786-61805 | Msa1423300:intron | 55.0% |
| ATTCCGGGTTGCTCTGTTGG+TGG | - | tig0025526:61927-61946 | Msa1423300:intron | 55.0% | |
| TTCCGGGTTGCTCTGTTGGT+GGG | - | tig0025526:61928-61947 | Msa1423300:intron | 55.0% | |
| GATACGTGAGATGGCGATGG+GGG | - | tig0025526:62028-62047 | Msa1423300:intron | 55.0% | |
| AAAGCAACGGCAACGGTTGC+CGG | - | tig0025526:64365-64384 | Msa1423300:CDS | 55.0% | |
| TTGAAGACGACACCTGAGGC+TGG | - | tig0025526:64397-64416 | Msa1423300:CDS | 55.0% | |
| ACACCTGAGGCTGGTAGCAA+GGG | - | tig0025526:64406-64425 | Msa1423300:CDS | 55.0% | |
| GACCCACCAACAGAGCAACC+CGG | + | tig0025526:61933-61952 | None:intergenic | 60.0% | |
| ! | GGGTTGCTCTGTTGGTGGGT+CGG | - | tig0025526:61932-61951 | Msa1423300:intron | 60.0% |
| ! | GGTTGCTCTGTTGGTGGGTC+GGG | - | tig0025526:61933-61952 | Msa1423300:intron | 60.0% |
| ! | TCTGTTGGTGGGTCGGGTGT+TGG | - | tig0025526:61939-61958 | Msa1423300:intron | 60.0% |
| GACACCTGAGGCTGGTAGCA+AGG | - | tig0025526:64405-64424 | Msa1423300:CDS | 60.0% | |
| TGAGATGGCGATGGGGGCAG+CGG | - | tig0025526:62034-62053 | Msa1423300:intron | 65.0% | |
| CTGCCCTTGCTACCAGCCTC+AGG | + | tig0025526:64412-64431 | None:intergenic | 65.0% | |
| TGGCGATGGGGGCAGCGGAG+AGG | - | tig0025526:62039-62058 | Msa1423300:intron | 75.0% | |
| GGCGATGGGGGCAGCGGAGA+GGG | - | tig0025526:62040-62059 | Msa1423300:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025526 | gene | 61177 | 64648 | 61177 | ID=Msa1423300;Name=Msa1423300 |
| tig0025526 | mRNA | 61177 | 64648 | 61177 | ID=Msa1423300-mRNA-1;Parent=Msa1423300;Name=Msa1423300-mRNA-1;_AED=0.21;_eAED=0.21;_QI=46|0.66|0.57|1|0.33|0.42|7|432|270 |
| tig0025526 | exon | 61177 | 61651 | 61177 | ID=Msa1423300-mRNA-1:exon:3146;Parent=Msa1423300-mRNA-1 |
| tig0025526 | exon | 62057 | 62159 | 62057 | ID=Msa1423300-mRNA-1:exon:3145;Parent=Msa1423300-mRNA-1 |
| tig0025526 | exon | 63712 | 63926 | 63712 | ID=Msa1423300-mRNA-1:exon:3144;Parent=Msa1423300-mRNA-1 |
| tig0025526 | exon | 63936 | 64146 | 63936 | ID=Msa1423300-mRNA-1:exon:3143;Parent=Msa1423300-mRNA-1 |
| tig0025526 | exon | 64192 | 64274 | 64192 | ID=Msa1423300-mRNA-1:exon:3142;Parent=Msa1423300-mRNA-1 |
| tig0025526 | exon | 64355 | 64437 | 64355 | ID=Msa1423300-mRNA-1:exon:3141;Parent=Msa1423300-mRNA-1 |
| tig0025526 | exon | 64528 | 64648 | 64528 | ID=Msa1423300-mRNA-1:exon:3140;Parent=Msa1423300-mRNA-1 |
| tig0025526 | five_prime_UTR | 64603 | 64648 | 64603 | ID=Msa1423300-mRNA-1:five_prime_utr;Parent=Msa1423300-mRNA-1 |
| tig0025526 | CDS | 64528 | 64602 | 64528 | ID=Msa1423300-mRNA-1:cds;Parent=Msa1423300-mRNA-1 |
| tig0025526 | CDS | 64355 | 64437 | 64355 | ID=Msa1423300-mRNA-1:cds;Parent=Msa1423300-mRNA-1 |
| tig0025526 | CDS | 64192 | 64274 | 64192 | ID=Msa1423300-mRNA-1:cds;Parent=Msa1423300-mRNA-1 |
| tig0025526 | CDS | 63936 | 64146 | 63936 | ID=Msa1423300-mRNA-1:cds;Parent=Msa1423300-mRNA-1 |
| tig0025526 | CDS | 63712 | 63926 | 63712 | ID=Msa1423300-mRNA-1:cds;Parent=Msa1423300-mRNA-1 |
| tig0025526 | CDS | 62057 | 62159 | 62057 | ID=Msa1423300-mRNA-1:cds;Parent=Msa1423300-mRNA-1 |
| tig0025526 | CDS | 61609 | 61651 | 61609 | ID=Msa1423300-mRNA-1:cds;Parent=Msa1423300-mRNA-1 |
| tig0025526 | three_prime_UTR | 61177 | 61608 | 61177 | ID=Msa1423300-mRNA-1:three_prime_utr;Parent=Msa1423300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
