Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720030 | XP_013453662.1 | 85.764 | 288 | 23 | 2 | 1 | 270 | 1 | 288 | 2.07e-165 | 469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720030 | A0A072UEZ9 | 85.764 | 288 | 23 | 2 | 1 | 270 | 1 | 288 | 9.87e-166 | 469 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007850 | Msa0720030 | 0.836594 | 8.537690e-57 | -8.615850e-47 |
| Msa0027580 | Msa0720030 | 0.807004 | 6.246182e-50 | -8.615850e-47 |
| Msa0047160 | Msa0720030 | 0.801761 | 7.731937e-49 | -8.615850e-47 |
| Msa0056270 | Msa0720030 | 0.816934 | 4.280006e-52 | -8.615850e-47 |
| Msa0075340 | Msa0720030 | 0.807728 | 4.386405e-50 | -8.615850e-47 |
| Msa0077010 | Msa0720030 | 0.842743 | 2.146452e-58 | -8.615850e-47 |
| Msa0609000 | Msa0720030 | 0.831804 | 1.356090e-55 | -8.615850e-47 |
| Msa0610390 | Msa0720030 | 0.826977 | 2.017651e-54 | -8.615850e-47 |
| Msa0615580 | Msa0720030 | 0.806259 | 8.970290e-50 | -8.615850e-47 |
| Msa0618930 | Msa0720030 | 0.826590 | 2.495927e-54 | -8.615850e-47 |
| Msa0650920 | Msa0720030 | 0.811280 | 7.576568e-51 | -8.615850e-47 |
| Msa0656810 | Msa0720030 | 0.804482 | 2.114759e-49 | -8.615850e-47 |
| Msa0666230 | Msa0720030 | 0.803243 | 3.826509e-49 | -8.615850e-47 |
| Msa0683780 | Msa0720030 | 0.808239 | 3.415633e-50 | -8.615850e-47 |
| Msa0707390 | Msa0720030 | 0.803945 | 2.736276e-49 | -8.615850e-47 |
| Msa0719420 | Msa0720030 | 0.809056 | 2.284384e-50 | -8.615850e-47 |
| Msa0720030 | Msa0789680 | 0.807755 | 4.329040e-50 | -8.615850e-47 |
| Msa0720030 | Msa0805500 | 0.830571 | 2.724498e-55 | -8.615850e-47 |
| Msa0720030 | Msa0814250 | 0.802459 | 5.554372e-49 | -8.615850e-47 |
| Msa0720030 | Msa0839200 | 0.925390 | 1.958612e-90 | -8.615850e-47 |
| Msa0720030 | Msa0913240 | 0.829662 | 4.541652e-55 | -8.615850e-47 |
| Msa0720030 | Msa0943170 | 0.817397 | 3.367857e-52 | -8.615850e-47 |
| Msa0720030 | Msa0960830 | 0.819145 | 1.354353e-52 | -8.615850e-47 |
| Msa0720030 | Msa0963020 | 0.813515 | 2.462243e-51 | -8.615850e-47 |
| Msa0720030 | Msa1019240 | 0.804098 | 2.542956e-49 | -8.615850e-47 |
| Msa0720030 | Msa1025940 | 0.847845 | 8.935043e-60 | -8.615850e-47 |
| Msa0720030 | Msa1070390 | 0.804860 | 1.763389e-49 | -8.615850e-47 |
| Msa0720030 | Msa1083880 | 0.845188 | 4.746859e-59 | -8.615850e-47 |
| Msa0720030 | Msa1122820 | 0.813163 | 2.942054e-51 | -8.615850e-47 |
| Msa0720030 | Msa1126850 | 0.823798 | 1.140907e-53 | -8.615850e-47 |
| Msa0720030 | Msa1131560 | 0.803806 | 2.924255e-49 | -8.615850e-47 |
| Msa0720030 | Msa1165780 | 0.806109 | 9.649121e-50 | -8.615850e-47 |
| Msa0720030 | Msa1165960 | 0.818001 | 2.461805e-52 | -8.615850e-47 |
| Msa0720030 | Msa1166870 | 0.825113 | 5.595259e-54 | -8.615850e-47 |
| Msa0720030 | Msa1179950 | 0.824134 | 9.517331e-54 | -8.615850e-47 |
| Msa0720030 | Msa1179980 | 0.842055 | 3.266185e-58 | -8.615850e-47 |
| Msa0720030 | Msa1201830 | 0.818467 | 1.930385e-52 | -8.615850e-47 |
| Msa0720030 | Msa1211830 | 0.805245 | 1.465264e-49 | -8.615850e-47 |
| Msa0720030 | Msa1227690 | 0.828742 | 7.590243e-55 | -8.615850e-47 |
| Msa0720030 | Msa1270620 | 0.842302 | 2.810320e-58 | -8.615850e-47 |
| Msa0720030 | Msa1270690 | 0.842233 | 2.929597e-58 | -8.615850e-47 |
| Msa0720030 | Msa1271580 | 0.801449 | 8.958903e-49 | -8.615850e-47 |
| Msa0720030 | Msa1286510 | 0.819980 | 8.735465e-53 | -8.615850e-47 |
| Msa0720030 | Msa1294840 | 0.804772 | 1.840348e-49 | -8.615850e-47 |
| Msa0720030 | Msa1299700 | 0.801476 | 8.845477e-49 | -8.615850e-47 |
| Msa0720030 | Msa1306990 | 0.832000 | 1.213466e-55 | -8.615850e-47 |
| Msa0720030 | Msa1331710 | 0.819455 | 1.150789e-52 | -8.615850e-47 |
| Msa0720030 | Msa1349570 | 0.816815 | 4.552883e-52 | -8.615850e-47 |
| Msa0720030 | Msa1358430 | 0.813821 | 2.108033e-51 | -8.615850e-47 |
| Msa0720030 | Msa1369190 | 0.801815 | 7.535007e-49 | -8.615850e-47 |
| Msa0720030 | Msa1397940 | 0.833889 | 4.114269e-56 | -8.615850e-47 |
| Msa0720030 | Msa1423300 | 0.939657 | 8.789937e-100 | -8.615850e-47 |
| Msa0126840 | Msa0720030 | 0.847112 | 1.420521e-59 | -8.615850e-47 |
| Msa0126880 | Msa0720030 | 0.803372 | 3.596714e-49 | -8.615850e-47 |
| Msa0127040 | Msa0720030 | 0.816826 | 4.525741e-52 | -8.615850e-47 |
| Msa0165950 | Msa0720030 | 0.814997 | 1.158625e-51 | -8.615850e-47 |
| Msa0166750 | Msa0720030 | 0.826786 | 2.240447e-54 | -8.615850e-47 |
| Msa0167480 | Msa0720030 | 0.823917 | 1.069724e-53 | -8.615850e-47 |
| Msa0171940 | Msa0720030 | 0.810364 | 1.195646e-50 | -8.615850e-47 |
| Msa0174000 | Msa0720030 | 0.800006 | 1.764696e-48 | -8.615850e-47 |
| Msa0221030 | Msa0720030 | 0.804491 | 2.105639e-49 | -8.615850e-47 |
| Msa0419520 | Msa0720030 | 0.801337 | 9.444315e-49 | -8.615850e-47 |
| Msa0443390 | Msa0720030 | 0.806446 | 8.194166e-50 | -8.615850e-47 |
| Msa0248460 | Msa0720030 | 0.814461 | 1.522335e-51 | -8.615850e-47 |
| Msa0262480 | Msa0720030 | 0.813015 | 3.170219e-51 | -8.615850e-47 |
| Msa0280430 | Msa0720030 | 0.825104 | 5.621973e-54 | -8.615850e-47 |
| Msa0291520 | Msa0720030 | 0.827554 | 1.467347e-54 | -8.615850e-47 |
| Msa0300350 | Msa0720030 | 0.822419 | 2.392898e-53 | -8.615850e-47 |
| Msa0534750 | Msa0720030 | 0.803870 | 2.835692e-49 | -8.615850e-47 |
| Msa0550540 | Msa0720030 | 0.820832 | 5.568202e-53 | -8.615850e-47 |
| Msa0550570 | Msa0720030 | 0.835600 | 1.526953e-56 | -8.615850e-47 |
| Msa0581130 | Msa0720030 | 0.821706 | 3.500584e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720030 | MtrunA17_Chr5g0410701 | 85.417 | 288 | 23 | 3 | 1 | 270 | 1 | 287 | 1.12e-166 | 462 |
| Msa0720030 | MtrunA17_Chr5g0410691 | 56.842 | 95 | 26 | 3 | 129 | 220 | 3 | 85 | 1.86e-22 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 83 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTATTAGAACAACGATTTC+TGG | 0.136302 | 5_1:-15733471 | Msa0720030:CDS |
| AGAGAAAAGGTTGAAGATTT+TGG | 0.139079 | 5_1:-15733817 | Msa0720030:CDS |
| AACTCTGGTGTGTCGTATTC+TGG | 0.273236 | 5_1:-15733741 | Msa0720030:CDS |
| TCCAACTTTGAATCAATATC+AGG | 0.279193 | 5_1:+15733966 | None:intergenic |
| TTGGAGCAAATTAATCAATA+TGG | 0.280579 | 5_1:-15733798 | Msa0720030:CDS |
| CATCCATATTCTAGAGAGTT+AGG | 0.302253 | 5_1:-15731283 | Msa0720030:three_prime_UTR |
| TTCTTTGATGCATACTTTGA+TGG | 0.305301 | 5_1:-15730954 | Msa0720030:three_prime_UTR |
| TCACCTAACTCTCTAGAATA+TGG | 0.317659 | 5_1:+15731280 | None:intergenic |
| GGATCAATGCACATCAATTC+CGG | 0.320605 | 5_1:-15733631 | Msa0720030:CDS |
| AAAGCAACGGCAACGGTTGC+CGG | 0.332834 | 5_1:-15731177 | Msa0720030:three_prime_UTR |
| TTGAAATTTCAACTACTTCA+AGG | 0.362528 | 5_1:-15734094 | Msa0720030:intron |
| TAATGATTATACTGCGGAAA+AGG | 0.365046 | 5_1:-15733571 | Msa0720030:CDS |
| TATTTGCCTATTGTTAATAT+TGG | 0.367246 | 5_1:-15731027 | Msa0720030:three_prime_UTR |
| GGTTGCTCTGTTGGTGGGTC+GGG | 0.370289 | 5_1:-15733609 | Msa0720030:CDS |
| TCTGAGCCACCAATTTGTTC+AGG | 0.371252 | 5_1:+15731853 | None:intergenic |
| CCTTGTTTAGATTCAACAAT+TGG | 0.380847 | 5_1:-15733930 | Msa0720030:intron |
| GGTAATAAAGTGTTGATTCC+TGG | 0.383675 | 5_1:-15733549 | Msa0720030:CDS |
| TATCTTGCTGAACAATCAAT+TGG | 0.405329 | 5_1:-15731367 | Msa0720030:CDS |
| CTCTTCAAGTTCATAGTACT+CGG | 0.405743 | 5_1:+15733836 | None:intergenic |
| AATCAACAATATGCAGCAAC+TGG | 0.408282 | 5_1:-15733768 | Msa0720030:CDS |
| GATTCTGAACCTGAACAAAT+TGG | 0.413772 | 5_1:-15731862 | Msa0720030:CDS |
| TGGGTAAAGATGGAGATCTA+TGG | 0.416837 | 5_1:-15734319 | Msa0720030:CDS |
| GGGTTGCTCTGTTGGTGGGT+CGG | 0.417492 | 5_1:-15733610 | Msa0720030:CDS |
| TTGCCTATTGTTAATATTGG+TGG | 0.420192 | 5_1:-15731024 | Msa0720030:three_prime_UTR |
| CTGAATGCTTGGTATTCAGC+TGG | 0.428215 | 5_1:-15731811 | Msa0720030:CDS |
| ATTCCACCAATATTAACAAT+AGG | 0.441685 | 5_1:+15731021 | None:intergenic |
| TATTCAGCTGGCTTCCATAC+CGG | 0.442511 | 5_1:-15731799 | Msa0720030:CDS |
| TCATAATACTGACATTCTCT+TGG | 0.445582 | 5_1:+15731228 | None:intergenic |
| GAGAATGTCAGTATTATGAT+AGG | 0.446225 | 5_1:-15731224 | Msa0720030:three_prime_UTR |
| TCAATTCCGGGTTGCTCTGT+TGG | 0.450395 | 5_1:-15733618 | Msa0720030:CDS |
| TCTGTTGGTGGGTCGGGTGT+TGG | 0.461198 | 5_1:-15733603 | Msa0720030:CDS |
| ATTCCGGGTTGCTCTGTTGG+TGG | 0.463844 | 5_1:-15733615 | Msa0720030:CDS |
| TTACTGCTGTTCTGAATGCT+TGG | 0.464273 | 5_1:-15731822 | Msa0720030:CDS |
| CTGCCCTTGCTACCAGCCTC+AGG | 0.464534 | 5_1:+15731133 | None:intergenic |
| CAACATGAACACACAACATT+CGG | 0.469002 | 5_1:+15733678 | None:intergenic |
| ACTATGAACTTGAAGAGAAA+AGG | 0.469572 | 5_1:-15733830 | Msa0720030:CDS |
| GATCAATGCACATCAATTCC+GGG | 0.470986 | 5_1:-15733630 | Msa0720030:CDS |
| TCAGCAAAAGATGAAAATCA+TGG | 0.472024 | 5_1:+15731105 | None:intergenic |
| TTCCGGGTTGCTCTGTTGGT+GGG | 0.489093 | 5_1:-15733614 | Msa0720030:CDS |
| AAGTGTGTGTGCTCAAACAA+TGG | 0.490106 | 5_1:-15734339 | Msa0720030:exon |
| TCCTGATATTGATTCAAAGT+TGG | 0.501063 | 5_1:-15733967 | Msa0720030:CDS |
| CGACGCAATCTCTTCTTACA+AGG | 0.504755 | 5_1:-15734267 | Msa0720030:intron |
| ATTCAGCTGGCTTCCATACC+GGG | 0.504838 | 5_1:-15731798 | Msa0720030:CDS |
| GACACCTGAGGCTGGTAGCA+AGG | 0.507324 | 5_1:-15731137 | Msa0720030:three_prime_UTR |
| AAATTAATCAATATGGTGGT+TGG | 0.517556 | 5_1:-15733791 | Msa0720030:CDS |
| AATGATTATACTGCGGAAAA+GGG | 0.519609 | 5_1:-15733570 | Msa0720030:CDS |
| GCTCAAACAATGGGTAAAGA+TGG | 0.521554 | 5_1:-15734329 | Msa0720030:exon |
| GGAGATGTTAATGTAAATGA+AGG | 0.522577 | 5_1:-15733450 | Msa0720030:intron |
| CTTTGATGGAAGTTATGTCA+TGG | 0.523078 | 5_1:-15730940 | Msa0720030:three_prime_UTR |
| CTAACTCTCTAGAATATGGA+TGG | 0.524846 | 5_1:+15731284 | None:intergenic |
| ATACTCTTAAACTGTGTCAT+GGG | 0.525262 | 5_1:+15731201 | None:intergenic |
| CATACTCTTAAACTGTGTCA+TGG | 0.532568 | 5_1:+15731200 | None:intergenic |
| GGGTAAAGATGGAGATCTAT+GGG | 0.534204 | 5_1:-15734318 | Msa0720030:CDS |
| CACTTGAAGATCTCTCATCT+AGG | 0.539768 | 5_1:+15731322 | None:intergenic |
| GCATCAAAGAAGTTGTTGAC+AGG | 0.543363 | 5_1:+15730966 | None:intergenic |
| TCCGCAGTATAATCATTACA+AGG | 0.549192 | 5_1:+15733576 | None:intergenic |
| AAGATACGTGAGATGGCGAT+GGG | 0.549503 | 5_1:-15733516 | Msa0720030:CDS |
| GAGCAAATTAATCAATATGG+TGG | 0.566754 | 5_1:-15733795 | Msa0720030:CDS |
| GCAGCAACTGGGTTGAACTC+TGG | 0.568033 | 5_1:-15733756 | Msa0720030:CDS |
| TCTGAACCTGAACAAATTGG+TGG | 0.569521 | 5_1:-15731859 | Msa0720030:CDS |
| GGGTTTATGTACAAACTCGA+AGG | 0.571239 | 5_1:-15734377 | None:intergenic |
| ACACCTGAGGCTGGTAGCAA+GGG | 0.571778 | 5_1:-15731136 | Msa0720030:three_prime_UTR |
| CCAATTGTTGAATCTAAACA+AGG | 0.581225 | 5_1:+15733930 | None:intergenic |
| GGTTTATGTACAAACTCGAA+GGG | 0.581755 | 5_1:-15734376 | None:intergenic |
| GACCCACCAACAGAGCAACC+CGG | 0.586706 | 5_1:+15733612 | None:intergenic |
| TCGTCTTCAACTACGACAGC+CGG | 0.587239 | 5_1:+15731158 | None:intergenic |
| TTGAAGACGACACCTGAGGC+TGG | 0.591141 | 5_1:-15731145 | Msa0720030:three_prime_UTR |
| GTGTTGATTCCTGGTGGAGA+TGG | 0.591707 | 5_1:-15733540 | Msa0720030:CDS |
| TAAGATACGTGAGATGGCGA+TGG | 0.591727 | 5_1:-15733517 | Msa0720030:CDS |
| ATCAACAATATGCAGCAACT+GGG | 0.593424 | 5_1:-15733767 | Msa0720030:CDS |
| GATACGTGAGATGGCGATGG+GGG | 0.607202 | 5_1:-15733514 | Msa0720030:CDS |
| AGTGTGTGTGCTCAAACAAT+GGG | 0.608252 | 5_1:-15734338 | Msa0720030:exon |
| TAACTCTCTAGAATATGGAT+GGG | 0.614522 | 5_1:+15731285 | None:intergenic |
| GAGTATGAAAGCAACGGCAA+CGG | 0.620078 | 5_1:-15731184 | Msa0720030:three_prime_UTR |
| CGTATCTTACCATCTCCACC+AGG | 0.620615 | 5_1:+15733531 | None:intergenic |
| AGATGGTAAGATACGTGAGA+TGG | 0.625345 | 5_1:-15733523 | Msa0720030:CDS |
| ACAAATTGGTGGCTCAGAGA+CGG | 0.626621 | 5_1:-15731848 | Msa0720030:CDS |
| GTTTAAGAGTATGAAAGCAA+CGG | 0.636754 | 5_1:-15731190 | Msa0720030:three_prime_UTR |
| CTAGATGAGAGATCTTCAAG+TGG | 0.639257 | 5_1:-15731321 | Msa0720030:three_prime_UTR |
| AATAAAGTGTTGATTCCTGG+TGG | 0.645556 | 5_1:-15733546 | Msa0720030:CDS |
| AGATACGTGAGATGGCGATG+GGG | 0.695008 | 5_1:-15733515 | Msa0720030:CDS |
| GTAGTTGAAGACGACACCTG+AGG | 0.710279 | 5_1:-15731149 | Msa0720030:three_prime_UTR |
| ACCTTGTAATGATTATACTG+CGG | 0.710870 | 5_1:-15733577 | Msa0720030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATTTTTTTGAAATTAAAT+TGG | + | chr5_1:15731220-15731239 | None:intergenic | 10.0% |
| !!! | AACTTTATGTTTTTTTTTAA+GGG | - | chr5_1:15734205-15734224 | Msa0720030:intron | 10.0% |
| !!! | TGTTTTATTGTTGTAATTTT+GGG | + | chr5_1:15732351-15732370 | None:intergenic | 15.0% |
| !!! | TGATTAATCAATTGATTTTT+TGG | - | chr5_1:15732956-15732975 | Msa0720030:intron | 15.0% |
| !!! | GATTAATCAATTGATTTTTT+GGG | - | chr5_1:15732957-15732976 | Msa0720030:intron | 15.0% |
| !!! | TACTTTTTTGTATAGATAAA+TGG | - | chr5_1:15733308-15733327 | Msa0720030:intron | 15.0% |
| !!! | CAACTTTATGTTTTTTTTTA+AGG | - | chr5_1:15734204-15734223 | Msa0720030:intron | 15.0% |
| !!! | ACTTTATGTTTTTTTTTAAG+GGG | - | chr5_1:15734206-15734225 | Msa0720030:intron | 15.0% |
| !!! | GAAATTAAGTTGAATTGAAA+GGG | + | chr5_1:15731088-15731107 | None:intergenic | 20.0% |
| !!! | TGAAATTAAGTTGAATTGAA+AGG | + | chr5_1:15731089-15731108 | None:intergenic | 20.0% |
| !! | TATATTCAATAACAAAAGCA+TGG | + | chr5_1:15731890-15731909 | None:intergenic | 20.0% |
| !!! | GTTGTTTTCTTTAAAATGAA+AGG | - | chr5_1:15732009-15732028 | Msa0720030:intron | 20.0% |
| !!! | CTGTTTTATTGTTGTAATTT+TGG | + | chr5_1:15732352-15732371 | None:intergenic | 20.0% |
| !! | TCAAAATATAGGAAATGATA+GGG | + | chr5_1:15732902-15732921 | None:intergenic | 20.0% |
| !! | ATCAAAATATAGGAAATGAT+AGG | + | chr5_1:15732903-15732922 | None:intergenic | 20.0% |
| !!! | TTATGTAATTTGATGATTGA+AGG | - | chr5_1:15733084-15733103 | Msa0720030:intron | 20.0% |
| !! | GCATATTAAACATTTAAGAA+CGG | + | chr5_1:15733195-15733214 | None:intergenic | 20.0% |
| !! | TAATTCAGATAAAAAGAAAG+AGG | - | chr5_1:15733398-15733417 | Msa0720030:intron | 20.0% |
| !!! | TATTTTCTTGTATAACAATG+AGG | + | chr5_1:15733550-15733569 | None:intergenic | 20.0% |
| !! | ACAAAATAAAAATACGTATC+TGG | - | chr5_1:15733627-15733646 | Msa0720030:CDS | 20.0% |
| !! | TATTTGCCTATTGTTAATAT+TGG | - | chr5_1:15734255-15734274 | Msa0720030:intron | 20.0% |
| ! | TTTCTGCTGAATAAGAAAAA+GGG | + | chr5_1:15731113-15731132 | None:intergenic | 25.0% |
| !! | TTTTCTGCTGAATAAGAAAA+AGG | + | chr5_1:15731114-15731133 | None:intergenic | 25.0% |
| !!! | TTCTGATTCTTGTTTGTTTT+TGG | + | chr5_1:15731149-15731168 | None:intergenic | 25.0% |
| !! | TCAACGTTTTCTTCAATTAT+TGG | + | chr5_1:15731172-15731191 | None:intergenic | 25.0% |
| ! | TTGAAATTTCAACTACTTCA+AGG | - | chr5_1:15731188-15731207 | Msa0720030:three_prime_UTR | 25.0% |
| ! | AAACTCAAAATGAGCATAAT+GGG | - | chr5_1:15731380-15731399 | Msa0720030:intron | 25.0% |
| ! | TTGGAGCAAATTAATCAATA+TGG | - | chr5_1:15731484-15731503 | Msa0720030:intron | 25.0% |
| ! | AAATTAATCAATATGGTGGT+TGG | - | chr5_1:15731491-15731510 | Msa0720030:intron | 25.0% |
| !!! | TTTCTTTAAAATGAAAGGAC+CGG | - | chr5_1:15732014-15732033 | Msa0720030:intron | 25.0% |
| ! | TGTTCATATAACCATAAATC+CGG | + | chr5_1:15732036-15732055 | None:intergenic | 25.0% |
| ! | TATTACAGAAGATATACGTT+AGG | - | chr5_1:15732323-15732342 | Msa0720030:intron | 25.0% |
| ! | GATTGATTATTAATTGACTG+TGG | - | chr5_1:15732400-15732419 | Msa0720030:intron | 25.0% |
| !! | TGATTAGTCAGTTATCATTA+GGG | + | chr5_1:15732501-15732520 | None:intergenic | 25.0% |
| !! | TTGATTAGTCAGTTATCATT+AGG | + | chr5_1:15732502-15732521 | None:intergenic | 25.0% |
| ! | TCCATGATATAAGGAATTTA+GGG | + | chr5_1:15732551-15732570 | None:intergenic | 25.0% |
| ! | TTCCATGATATAAGGAATTT+AGG | + | chr5_1:15732552-15732571 | None:intergenic | 25.0% |
| ! | TCATAAATCAATTCCTCATT+AGG | - | chr5_1:15732680-15732699 | Msa0720030:intron | 25.0% |
| ! | TTATTAGATCTTTCCTTCTT+AGG | - | chr5_1:15733219-15733238 | Msa0720030:intron | 25.0% |
| ! | ATTAATCTTCACTAAAACAG+AGG | + | chr5_1:15733703-15733722 | None:intergenic | 25.0% |
| ! | ATTCCACCAATATTAACAAT+AGG | + | chr5_1:15734264-15734283 | None:intergenic | 25.0% |
| !! | AGCTATAACAAATTTTCACA+TGG | + | chr5_1:15734287-15734306 | None:intergenic | 25.0% |
| GAATTTGATTGAGTAGGAAA+AGG | + | chr5_1:15731066-15731085 | None:intergenic | 30.0% | |
| TTCTGCTGAATAAGAAAAAG+GGG | + | chr5_1:15731112-15731131 | None:intergenic | 30.0% | |
| !! | TCCTGATATTGATTCAAAGT+TGG | - | chr5_1:15731315-15731334 | Msa0720030:three_prime_UTR | 30.0% |
| TCCAACTTTGAATCAATATC+AGG | + | chr5_1:15731319-15731338 | None:intergenic | 30.0% | |
| CCAATTGTTGAATCTAAACA+AGG | + | chr5_1:15731355-15731374 | None:intergenic | 30.0% | |
| ! | CCTTGTTTAGATTCAACAAT+TGG | - | chr5_1:15731352-15731371 | Msa0720030:CDS | 30.0% |
| GAAACTCAAAATGAGCATAA+TGG | - | chr5_1:15731379-15731398 | Msa0720030:intron | 30.0% | |
| AATGGGTATTCTTATGAACA+AGG | - | chr5_1:15731397-15731416 | Msa0720030:intron | 30.0% | |
| ACTATGAACTTGAAGAGAAA+AGG | - | chr5_1:15731452-15731471 | Msa0720030:intron | 30.0% | |
| ! | AGAGAAAAGGTTGAAGATTT+TGG | - | chr5_1:15731465-15731484 | Msa0720030:intron | 30.0% |
| GAGCAAATTAATCAATATGG+TGG | - | chr5_1:15731487-15731506 | Msa0720030:intron | 30.0% | |
| ACCTTGTAATGATTATACTG+CGG | - | chr5_1:15731705-15731724 | Msa0720030:intron | 30.0% | |
| TAATGATTATACTGCGGAAA+AGG | - | chr5_1:15731711-15731730 | Msa0720030:intron | 30.0% | |
| AATGATTATACTGCGGAAAA+GGG | - | chr5_1:15731712-15731731 | Msa0720030:intron | 30.0% | |
| ACTATTAGAACAACGATTTC+TGG | - | chr5_1:15731811-15731830 | Msa0720030:CDS | 30.0% | |
| GGAGATGTTAATGTAAATGA+AGG | - | chr5_1:15731832-15731851 | Msa0720030:CDS | 30.0% | |
| !!! | TAAGAGGTTTTGTTGTAACA+AGG | - | chr5_1:15731961-15731980 | Msa0720030:intron | 30.0% |
| !!! | ATAGCTACTTTTTGTTGTTC+TGG | - | chr5_1:15732101-15732120 | Msa0720030:intron | 30.0% |
| TTTGCCTTCTGATATTCTTT+AGG | - | chr5_1:15732153-15732172 | Msa0720030:intron | 30.0% | |
| CAAACCTAAAGAATATCAGA+AGG | + | chr5_1:15732160-15732179 | None:intergenic | 30.0% | |
| ! | TTCTTTAGGTTTGAATGCTA+AGG | - | chr5_1:15732167-15732186 | Msa0720030:intron | 30.0% |
| !!! | AAGGATTTTTTATGTGATCC+TGG | - | chr5_1:15732186-15732205 | Msa0720030:intron | 30.0% |
| AGTAGTACATGCATATTGTT+AGG | - | chr5_1:15732249-15732268 | Msa0720030:intron | 30.0% | |
| TCAGTTATCATTAGGGATTA+GGG | + | chr5_1:15732494-15732513 | None:intergenic | 30.0% | |
| ACCCTAAATTCCTTATATCA+TGG | - | chr5_1:15732547-15732566 | Msa0720030:intron | 30.0% | |
| ! | TGGAAAGTTTATTCTAGAAG+GGG | + | chr5_1:15732638-15732657 | None:intergenic | 30.0% |
| ! | GTGGAAAGTTTATTCTAGAA+GGG | + | chr5_1:15732639-15732658 | None:intergenic | 30.0% |
| TGTGGAAAGTTTATTCTAGA+AGG | + | chr5_1:15732640-15732659 | None:intergenic | 30.0% | |
| AGAATAAACTTTCCACACTT+TGG | - | chr5_1:15732643-15732662 | Msa0720030:intron | 30.0% | |
| GAATAAACTTTCCACACTTT+GGG | - | chr5_1:15732644-15732663 | Msa0720030:intron | 30.0% | |
| TGAGCAATTCTGTTATAAGA+GGG | + | chr5_1:15732850-15732869 | None:intergenic | 30.0% | |
| GATAGGGAAATAATATGACA+TGG | + | chr5_1:15732886-15732905 | None:intergenic | 30.0% | |
| !! | CAGTGGTGTTATCAAAATAT+AGG | + | chr5_1:15732913-15732932 | None:intergenic | 30.0% |
| ACCAAATACGAAGATATTCT+TGG | - | chr5_1:15733335-15733354 | Msa0720030:intron | 30.0% | |
| CCAAATACGAAGATATTCTT+GGG | - | chr5_1:15733336-15733355 | Msa0720030:intron | 30.0% | |
| TTTGACAAAAACTTACTTCC+CGG | + | chr5_1:15733505-15733524 | None:intergenic | 30.0% | |
| AAAACAGAGGTTAAAGAGTT+CGG | + | chr5_1:15733690-15733709 | None:intergenic | 30.0% | |
| TCAATGGTTATACGAAAGAT+AGG | + | chr5_1:15733877-15733896 | None:intergenic | 30.0% | |
| TGTTATCATCATAGCTTCAA+TGG | + | chr5_1:15733893-15733912 | None:intergenic | 30.0% | |
| ATTGAAGCTATGATGATAAC+AGG | - | chr5_1:15733892-15733911 | Msa0720030:intron | 30.0% | |
| TATCTTGCTGAACAATCAAT+TGG | - | chr5_1:15733915-15733934 | Msa0720030:intron | 30.0% | |
| !! | TAACTCTCTAGAATATGGAT+GGG | + | chr5_1:15734000-15734019 | None:intergenic | 30.0% |
| TCATAATACTGACATTCTCT+TGG | + | chr5_1:15734057-15734076 | None:intergenic | 30.0% | |
| GAGAATGTCAGTATTATGAT+AGG | - | chr5_1:15734058-15734077 | Msa0720030:intron | 30.0% | |
| ATACTCTTAAACTGTGTCAT+GGG | + | chr5_1:15734084-15734103 | None:intergenic | 30.0% | |
| ! | GTTTAAGAGTATGAAAGCAA+CGG | - | chr5_1:15734092-15734111 | Msa0720030:intron | 30.0% |
| TCAGCAAAAGATGAAAATCA+TGG | + | chr5_1:15734180-15734199 | None:intergenic | 30.0% | |
| TTGCCTATTGTTAATATTGG+TGG | - | chr5_1:15734258-15734277 | Msa0720030:intron | 30.0% | |
| TTCTTTGATGCATACTTTGA+TGG | - | chr5_1:15734328-15734347 | Msa0720030:exon | 30.0% | |
| GAAAGGGAATTTGATTGAGT+AGG | + | chr5_1:15731072-15731091 | None:intergenic | 35.0% | |
| ! | CTCTTCAAGTTCATAGTACT+CGG | + | chr5_1:15731449-15731468 | None:intergenic | 35.0% |
| AATCAACAATATGCAGCAAC+TGG | - | chr5_1:15731514-15731533 | Msa0720030:intron | 35.0% | |
| ATCAACAATATGCAGCAACT+GGG | - | chr5_1:15731515-15731534 | Msa0720030:intron | 35.0% | |
| CAACATGAACACACAACATT+CGG | + | chr5_1:15731607-15731626 | None:intergenic | 35.0% | |
| ! | ACAGCACATTGACTAAAACA+CGG | + | chr5_1:15731631-15731650 | None:intergenic | 35.0% |
| TCCGCAGTATAATCATTACA+AGG | + | chr5_1:15731709-15731728 | None:intergenic | 35.0% | |
| !! | GGTAATAAAGTGTTGATTCC+TGG | - | chr5_1:15731733-15731752 | Msa0720030:intron | 35.0% |
| !! | AATAAAGTGTTGATTCCTGG+TGG | - | chr5_1:15731736-15731755 | Msa0720030:intron | 35.0% |
| ! | CTTAAGATTGATGCTCTAAG+AGG | - | chr5_1:15731945-15731964 | Msa0720030:intron | 35.0% |
| AAATGAAAGGACCGGATTTA+TGG | - | chr5_1:15732022-15732041 | Msa0720030:intron | 35.0% | |
| GAAGTTAGAGCAATAGAGAA+AGG | - | chr5_1:15732375-15732394 | Msa0720030:intron | 35.0% | |
| GTCAGTTATCATTAGGGATT+AGG | + | chr5_1:15732495-15732514 | None:intergenic | 35.0% | |
| ! | GATATAAGGAATTTAGGGTG+AGG | + | chr5_1:15732546-15732565 | None:intergenic | 35.0% |
| GCAACTGTTTCCATGATATA+AGG | + | chr5_1:15732560-15732579 | None:intergenic | 35.0% | |
| GTGAGCAATTCTGTTATAAG+AGG | + | chr5_1:15732851-15732870 | None:intergenic | 35.0% | |
| TATGACATGGAAGAGATTGA+GGG | + | chr5_1:15732873-15732892 | None:intergenic | 35.0% | |
| ATATGACATGGAAGAGATTG+AGG | + | chr5_1:15732874-15732893 | None:intergenic | 35.0% | |
| TTCAACATATGCAAGCACAA+AGG | + | chr5_1:15733021-15733040 | None:intergenic | 35.0% | |
| CATATGTTGAAATTGTGTCC+TGG | - | chr5_1:15733030-15733049 | Msa0720030:intron | 35.0% | |
| GCAGAATATAACAAAACACC+AGG | + | chr5_1:15733051-15733070 | None:intergenic | 35.0% | |
| ! | TTTGAGTTCTGATTTAGCCA+TGG | - | chr5_1:15733113-15733132 | Msa0720030:intron | 35.0% |
| ATAGCATGCTTCTACAAACA+TGG | + | chr5_1:15733153-15733172 | None:intergenic | 35.0% | |
| ! | TGTTTGTAGAAGCATGCTAT+TGG | - | chr5_1:15733153-15733172 | Msa0720030:intron | 35.0% |
| GATCTTTCCTTCTTAGGTTT+AGG | - | chr5_1:15733225-15733244 | Msa0720030:intron | 35.0% | |
| CAAATGACCTAAACCTAAGA+AGG | + | chr5_1:15733235-15733254 | None:intergenic | 35.0% | |
| CTTCTTAGGTTTAGGTCATT+TGG | - | chr5_1:15733233-15733252 | Msa0720030:intron | 35.0% | |
| CAAAAAAGTAAAGCCACTGA+AGG | + | chr5_1:15733298-15733317 | None:intergenic | 35.0% | |
| CCCAAGAATATCTTCGTATT+TGG | + | chr5_1:15733339-15733358 | None:intergenic | 35.0% | |
| GATTCTGAACCTGAACAAAT+TGG | - | chr5_1:15733420-15733439 | Msa0720030:intron | 35.0% | |
| AATACGTATCTGGATTGTTG+TGG | - | chr5_1:15733637-15733656 | Msa0720030:CDS | 35.0% | |
| GATTGTTGTGGCATTTAAGT+AGG | - | chr5_1:15733649-15733668 | Msa0720030:intron | 35.0% | |
| CTCAAATGTGCTTCAATCAT+AGG | + | chr5_1:15733768-15733787 | None:intergenic | 35.0% | |
| !! | CTAACTCTCTAGAATATGGA+TGG | + | chr5_1:15734001-15734020 | None:intergenic | 35.0% |
| ! | CATCCATATTCTAGAGAGTT+AGG | - | chr5_1:15733999-15734018 | Msa0720030:intron | 35.0% |
| !! | TCACCTAACTCTCTAGAATA+TGG | + | chr5_1:15734005-15734024 | None:intergenic | 35.0% |
| CATACTCTTAAACTGTGTCA+TGG | + | chr5_1:15734085-15734104 | None:intergenic | 35.0% | |
| ! | CAACTTTATGCTTTTGTGGA+TGG | - | chr5_1:15734231-15734250 | Msa0720030:intron | 35.0% |
| CTTTGATGGAAGTTATGTCA+TGG | - | chr5_1:15734342-15734361 | Msa0720030:exon | 35.0% | |
| AAGTGTGTGTGCTCAAACAA+TGG | - | chr5_1:15730943-15730962 | Msa0720030:three_prime_UTR | 40.0% | |
| AGTGTGTGTGCTCAAACAAT+GGG | - | chr5_1:15730944-15730963 | Msa0720030:three_prime_UTR | 40.0% | |
| GCTCAAACAATGGGTAAAGA+TGG | - | chr5_1:15730953-15730972 | Msa0720030:three_prime_UTR | 40.0% | |
| TGGGTAAAGATGGAGATCTA+TGG | - | chr5_1:15730963-15730982 | Msa0720030:three_prime_UTR | 40.0% | |
| GGGTAAAGATGGAGATCTAT+GGG | - | chr5_1:15730964-15730983 | Msa0720030:three_prime_UTR | 40.0% | |
| AGGTGAAGAGAAGAGAAGAA+AGG | + | chr5_1:15731046-15731065 | None:intergenic | 40.0% | |
| !!! | GTGTTTTAGTCAATGTGCTG+TGG | - | chr5_1:15731630-15731649 | Msa0720030:intron | 40.0% |
| GGATCAATGCACATCAATTC+CGG | - | chr5_1:15731651-15731670 | Msa0720030:intron | 40.0% | |
| GATCAATGCACATCAATTCC+GGG | - | chr5_1:15731652-15731671 | Msa0720030:intron | 40.0% | |
| AGATGGTAAGATACGTGAGA+TGG | - | chr5_1:15731759-15731778 | Msa0720030:intron | 40.0% | |
| CACTCTCATGCTCATAAATG+CGG | - | chr5_1:15731914-15731933 | Msa0720030:intron | 40.0% | |
| TCAGTGCACAAAATAGATCC+AGG | + | chr5_1:15732207-15732226 | None:intergenic | 40.0% | |
| ACTGTGGAATGTTTACAGAG+AGG | - | chr5_1:15732416-15732435 | Msa0720030:intron | 40.0% | |
| CTGTGGAATGTTTACAGAGA+GGG | - | chr5_1:15732417-15732436 | Msa0720030:intron | 40.0% | |
| AATCAATCCTCACACACAAC+TGG | - | chr5_1:15732580-15732599 | Msa0720030:intron | 40.0% | |
| ! | TATTCTAGAAGGGGCAAAAG+CGG | + | chr5_1:15732629-15732648 | None:intergenic | 40.0% |
| AGAGTTTCATCTCTTCTCTG+AGG | + | chr5_1:15732764-15732783 | None:intergenic | 40.0% | |
| AGTTAGTAACCGCTTTGGTT+GGG | + | chr5_1:15732792-15732811 | None:intergenic | 40.0% | |
| TAACACCACTGTCTACCTAA+TGG | - | chr5_1:15732922-15732941 | Msa0720030:intron | 40.0% | |
| ATCAGTTGCACAAGTCCATT+AGG | + | chr5_1:15732940-15732959 | None:intergenic | 40.0% | |
| GGACACTCAAATGAGAATGT+AGG | + | chr5_1:15732983-15733002 | None:intergenic | 40.0% | |
| CAAAGGTCGCAAAATGTGTT+AGG | + | chr5_1:15733004-15733023 | None:intergenic | 40.0% | |
| TGGAATCATGACTAGTACCA+TGG | + | chr5_1:15733133-15733152 | None:intergenic | 40.0% | |
| TAAAGCCACTGAAGGACAAA+AGG | + | chr5_1:15733290-15733309 | None:intergenic | 40.0% | |
| TCTGAACCTGAACAAATTGG+TGG | - | chr5_1:15733423-15733442 | Msa0720030:intron | 40.0% | |
| ! | TTACTGCTGTTCTGAATGCT+TGG | - | chr5_1:15733460-15733479 | Msa0720030:CDS | 40.0% |
| CAAAAACTTACTTCCCGGTA+TGG | + | chr5_1:15733500-15733519 | None:intergenic | 40.0% | |
| CTAGCATGTTGTTATGTAGC+AGG | - | chr5_1:15733573-15733592 | Msa0720030:CDS | 40.0% | |
| CACTTGAAGATCTCTCATCT+AGG | + | chr5_1:15733963-15733982 | None:intergenic | 40.0% | |
| CTAGATGAGAGATCTTCAAG+TGG | - | chr5_1:15733961-15733980 | Msa0720030:CDS | 40.0% | |
| ! | GGAGCAACTTTATGCTTTTG+TGG | - | chr5_1:15734227-15734246 | Msa0720030:intron | 40.0% |
| GCATCAAAGAAGTTGTTGAC+AGG | + | chr5_1:15734319-15734338 | None:intergenic | 40.0% | |
| CGACGCAATCTCTTCTTACA+AGG | - | chr5_1:15731015-15731034 | Msa0720030:three_prime_UTR | 45.0% | |
| AACTCTGGTGTGTCGTATTC+TGG | - | chr5_1:15731541-15731560 | Msa0720030:intron | 45.0% | |
| TAAGATACGTGAGATGGCGA+TGG | - | chr5_1:15731765-15731784 | Msa0720030:intron | 45.0% | |
| AAGATACGTGAGATGGCGAT+GGG | - | chr5_1:15731766-15731785 | Msa0720030:intron | 45.0% | |
| CAAGCTTTCGACTCAGTTAG+AGG | + | chr5_1:15732062-15732081 | None:intergenic | 45.0% | |
| GAACTAAAATCCAACGCTCC+TGG | - | chr5_1:15732123-15732142 | Msa0720030:intron | 45.0% | |
| ! | AAAAATGAAGCCAGGAGCGT+TGG | + | chr5_1:15732136-15732155 | None:intergenic | 45.0% |
| CAGAAGGCAAAAATGAAGCC+AGG | + | chr5_1:15732144-15732163 | None:intergenic | 45.0% | |
| ! | TTGTGCACTGATAGATCTGC+TGG | - | chr5_1:15732216-15732235 | Msa0720030:intron | 45.0% |
| !! | CCTAGCTCTGGTAAGAATCA+AGG | + | chr5_1:15732450-15732469 | None:intergenic | 45.0% |
| CCTTGATTCTTACCAGAGCT+AGG | - | chr5_1:15732447-15732466 | Msa0720030:intron | 45.0% | |
| TACCAGAGCTAGGATCCTTT+AGG | - | chr5_1:15732457-15732476 | Msa0720030:intron | 45.0% | |
| TTCCTAAAGGATCCTAGCTC+TGG | + | chr5_1:15732462-15732481 | None:intergenic | 45.0% | |
| ! | AATTTAGGGTGAGGTTGAGC+GGG | + | chr5_1:15732537-15732556 | None:intergenic | 45.0% |
| ! | GAATTTAGGGTGAGGTTGAG+CGG | + | chr5_1:15732538-15732557 | None:intergenic | 45.0% |
| AGAGATCGTGACTCAGCAAA+CGG | + | chr5_1:15732707-15732726 | None:intergenic | 45.0% | |
| CATTTGCGCTGAGATTACAG+GGG | + | chr5_1:15732739-15732758 | None:intergenic | 45.0% | |
| GCATTTGCGCTGAGATTACA+GGG | + | chr5_1:15732740-15732759 | None:intergenic | 45.0% | |
| AGCATTTGCGCTGAGATTAC+AGG | + | chr5_1:15732741-15732760 | None:intergenic | 45.0% | |
| CAGTTAGTAACCGCTTTGGT+TGG | + | chr5_1:15732793-15732812 | None:intergenic | 45.0% | |
| TTCGCAGTTAGTAACCGCTT+TGG | + | chr5_1:15732797-15732816 | None:intergenic | 45.0% | |
| GGAGAACGATAGAGTGGAAA+TGG | + | chr5_1:15732829-15732848 | None:intergenic | 45.0% | |
| TAAGAGGGAGAACGATAGAG+TGG | + | chr5_1:15732835-15732854 | None:intergenic | 45.0% | |
| CAAGTCCATTAGGTAGACAG+TGG | + | chr5_1:15732930-15732949 | None:intergenic | 45.0% | |
| ! | ACACACCTTTTGTCCTTCAG+TGG | - | chr5_1:15733282-15733301 | Msa0720030:intron | 45.0% |
| ! | TCTGAGCCACCAATTTGTTC+AGG | + | chr5_1:15733432-15733451 | None:intergenic | 45.0% |
| ! | ACAAATTGGTGGCTCAGAGA+CGG | - | chr5_1:15733434-15733453 | Msa0720030:intron | 45.0% |
| CTGAATGCTTGGTATTCAGC+TGG | - | chr5_1:15733471-15733490 | Msa0720030:CDS | 45.0% | |
| ! | TATTCAGCTGGCTTCCATAC+CGG | - | chr5_1:15733483-15733502 | Msa0720030:CDS | 45.0% |
| GAGTATGAAAGCAACGGCAA+CGG | - | chr5_1:15734098-15734117 | Msa0720030:CDS | 45.0% | |
| !!! | TTTATTTTGATTTATATAAT+AGG | - | chr5_1:15731269-15731288 | Msa0720030:three_prime_UTR | 5.0% |
| !!! | TTATTTTGATTTATATAATA+GGG | - | chr5_1:15731270-15731289 | Msa0720030:three_prime_UTR | 5.0% |
| TCAATTCCGGGTTGCTCTGT+TGG | - | chr5_1:15731664-15731683 | Msa0720030:intron | 50.0% | |
| !! | GTGTTGATTCCTGGTGGAGA+TGG | - | chr5_1:15731742-15731761 | Msa0720030:intron | 50.0% |
| CGTATCTTACCATCTCCACC+AGG | + | chr5_1:15731754-15731773 | None:intergenic | 50.0% | |
| AGATACGTGAGATGGCGATG+GGG | - | chr5_1:15731767-15731786 | Msa0720030:intron | 50.0% | |
| AGGGAGCAGTAGCTTCCTAA+AGG | + | chr5_1:15732475-15732494 | None:intergenic | 50.0% | |
| TGTAGCACCAGTTGTGTGTG+AGG | + | chr5_1:15732590-15732609 | None:intergenic | 50.0% | |
| ACTCAGCTACACCCAAAGTG+TGG | + | chr5_1:15732658-15732677 | None:intergenic | 50.0% | |
| CTCAGCAAACGGTCCTAATG+AGG | + | chr5_1:15732696-15732715 | None:intergenic | 50.0% | |
| CTCTCTCTACCCAACCAAAG+CGG | - | chr5_1:15732780-15732799 | Msa0720030:intron | 50.0% | |
| ! | ATTCAGCTGGCTTCCATACC+GGG | - | chr5_1:15733484-15733503 | Msa0720030:CDS | 50.0% |
| TCGTCTTCAACTACGACAGC+CGG | + | chr5_1:15734127-15734146 | None:intergenic | 50.0% | |
| GTAGTTGAAGACGACACCTG+AGG | - | chr5_1:15734133-15734152 | Msa0720030:CDS | 50.0% | |
| ! | GCAGCAACTGGGTTGAACTC+TGG | - | chr5_1:15731526-15731545 | Msa0720030:intron | 55.0% |
| ATTCCGGGTTGCTCTGTTGG+TGG | - | chr5_1:15731667-15731686 | Msa0720030:intron | 55.0% | |
| TTCCGGGTTGCTCTGTTGGT+GGG | - | chr5_1:15731668-15731687 | Msa0720030:intron | 55.0% | |
| GATACGTGAGATGGCGATGG+GGG | - | chr5_1:15731768-15731787 | Msa0720030:intron | 55.0% | |
| AAAGCAACGGCAACGGTTGC+CGG | - | chr5_1:15734105-15734124 | Msa0720030:CDS | 55.0% | |
| TTGAAGACGACACCTGAGGC+TGG | - | chr5_1:15734137-15734156 | Msa0720030:CDS | 55.0% | |
| ACACCTGAGGCTGGTAGCAA+GGG | - | chr5_1:15734146-15734165 | Msa0720030:CDS | 55.0% | |
| GACCCACCAACAGAGCAACC+CGG | + | chr5_1:15731673-15731692 | None:intergenic | 60.0% | |
| ! | GGGTTGCTCTGTTGGTGGGT+CGG | - | chr5_1:15731672-15731691 | Msa0720030:intron | 60.0% |
| ! | GGTTGCTCTGTTGGTGGGTC+GGG | - | chr5_1:15731673-15731692 | Msa0720030:intron | 60.0% |
| ! | TCTGTTGGTGGGTCGGGTGT+TGG | - | chr5_1:15731679-15731698 | Msa0720030:intron | 60.0% |
| GACACCTGAGGCTGGTAGCA+AGG | - | chr5_1:15734145-15734164 | Msa0720030:CDS | 60.0% | |
| TGAGATGGCGATGGGGGCAG+CGG | - | chr5_1:15731774-15731793 | Msa0720030:intron | 65.0% | |
| CTGCCCTTGCTACCAGCCTC+AGG | + | chr5_1:15734152-15734171 | None:intergenic | 65.0% | |
| TGGCGATGGGGGCAGCGGAG+AGG | - | chr5_1:15731779-15731798 | Msa0720030:intron | 75.0% | |
| GGCGATGGGGGCAGCGGAGA+GGG | - | chr5_1:15731780-15731799 | Msa0720030:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 15730916 | 15734388 | 15730916 | ID=Msa0720030;Name=Msa0720030 |
| chr5_1 | mRNA | 15730916 | 15734388 | 15730916 | ID=Msa0720030-mRNA-1;Parent=Msa0720030;Name=Msa0720030-mRNA-1;_AED=0.22;_eAED=0.22;_QI=46|0.66|0.57|1|0.33|0.57|7|432|270 |
| chr5_1 | exon | 15730916 | 15731390 | 15730916 | ID=Msa0720030-mRNA-1:exon:6098;Parent=Msa0720030-mRNA-1 |
| chr5_1 | exon | 15731796 | 15731898 | 15731796 | ID=Msa0720030-mRNA-1:exon:6097;Parent=Msa0720030-mRNA-1 |
| chr5_1 | exon | 15733451 | 15733665 | 15733451 | ID=Msa0720030-mRNA-1:exon:6096;Parent=Msa0720030-mRNA-1 |
| chr5_1 | exon | 15733675 | 15733885 | 15733675 | ID=Msa0720030-mRNA-1:exon:6095;Parent=Msa0720030-mRNA-1 |
| chr5_1 | exon | 15733931 | 15734013 | 15733931 | ID=Msa0720030-mRNA-1:exon:6094;Parent=Msa0720030-mRNA-1 |
| chr5_1 | exon | 15734095 | 15734177 | 15734095 | ID=Msa0720030-mRNA-1:exon:6093;Parent=Msa0720030-mRNA-1 |
| chr5_1 | exon | 15734268 | 15734388 | 15734268 | ID=Msa0720030-mRNA-1:exon:6092;Parent=Msa0720030-mRNA-1 |
| chr5_1 | five_prime_UTR | 15734343 | 15734388 | 15734343 | ID=Msa0720030-mRNA-1:five_prime_utr;Parent=Msa0720030-mRNA-1 |
| chr5_1 | CDS | 15734268 | 15734342 | 15734268 | ID=Msa0720030-mRNA-1:cds;Parent=Msa0720030-mRNA-1 |
| chr5_1 | CDS | 15734095 | 15734177 | 15734095 | ID=Msa0720030-mRNA-1:cds;Parent=Msa0720030-mRNA-1 |
| chr5_1 | CDS | 15733931 | 15734013 | 15733931 | ID=Msa0720030-mRNA-1:cds;Parent=Msa0720030-mRNA-1 |
| chr5_1 | CDS | 15733675 | 15733885 | 15733675 | ID=Msa0720030-mRNA-1:cds;Parent=Msa0720030-mRNA-1 |
| chr5_1 | CDS | 15733451 | 15733665 | 15733451 | ID=Msa0720030-mRNA-1:cds;Parent=Msa0720030-mRNA-1 |
| chr5_1 | CDS | 15731796 | 15731898 | 15731796 | ID=Msa0720030-mRNA-1:cds;Parent=Msa0720030-mRNA-1 |
| chr5_1 | CDS | 15731348 | 15731390 | 15731348 | ID=Msa0720030-mRNA-1:cds;Parent=Msa0720030-mRNA-1 |
| chr5_1 | three_prime_UTR | 15730916 | 15731347 | 15730916 | ID=Msa0720030-mRNA-1:three_prime_utr;Parent=Msa0720030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
