AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1428520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1428520 MtrunA17_Chr3g0127601 100.000 66 0 0 1 66 1 66 1.51e-43 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1428520 AT5G53650.1 65.152 66 23 0 1 66 1 66 5.98e-27 93.2

Find 38 sgRNAs with CRISPR-Local

Find 542 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGTATCCGGATGTATTT+TGG 0.172027 tig0026362:+63723 Msa1428520:three_prime_UTR
CAATCTTGAGAGAAAGAAAA+TGG 0.241800 tig0026362:+58065 Msa1428520:exon
GCTGCAACGGCGTCGTTTGC+TGG 0.270820 tig0026362:+58129 Msa1428520:CDS
TTTAGTTACTGCAAATGGTT+TGG 0.339295 tig0026362:+63891 Msa1428520:three_prime_UTR
TTCTTCTTCTCACGATGCTT+TGG 0.347097 tig0026362:-58013 None:intergenic
TCTCAAGATTGATTGATTGC+AGG 0.359997 tig0026362:-58053 None:intergenic
TTCTATTTAGTTACTGCAAA+TGG 0.363096 tig0026362:+63886 Msa1428520:three_prime_UTR
CTTCGGATCGGTTCTGTATC+CGG 0.372606 tig0026362:+63712 Msa1428520:three_prime_UTR
GGGAGAATACCTGTTGAGTA+TGG 0.376982 tig0026362:-58194 None:intergenic
ACAAACTGAAACTTCACAAT+AGG 0.401412 tig0026362:+63622 Msa1428520:CDS
GTTGGTGATTAATGAACATC+TGG 0.417754 tig0026362:+63819 Msa1428520:three_prime_UTR
AAACGACGTCGCTGCAAGAA+AGG 0.429481 tig0026362:+57942 None:intergenic
AAGAAAGGGGCACGCGCGTT+CGG 0.443751 tig0026362:+57957 Msa1428520:five_prime_UTR
AACGACGTCGCTGCAAGAAA+GGG 0.444268 tig0026362:+57943 None:intergenic
AATCTTGAGAGAAAGAAAAT+GGG 0.454045 tig0026362:+58066 Msa1428520:exon
AGAACCGATCCGAAGACTTA+TGG 0.456778 tig0026362:-63704 None:intergenic
AAACGACGCCGTTGCAGCAC+CGG 0.470941 tig0026362:-58124 None:intergenic
CCACCAATCCCATACTCAAC+AGG 0.477274 tig0026362:+58185 Msa1428520:CDS
AGCATCGTGAGAAGAAGAAA+GGG 0.477875 tig0026362:+58017 Msa1428520:five_prime_UTR
AACTTGTCACCATAAGTCTT+CGG 0.491211 tig0026362:+63695 Msa1428520:three_prime_UTR
AAGCATCGTGAGAAGAAGAA+AGG 0.520444 tig0026362:+58016 Msa1428520:five_prime_UTR
GTTCTTCGCCGGTGCTGCAA+CGG 0.522965 tig0026362:+58116 Msa1428520:CDS
AGACTTATGGTGACAAGTTG+AGG 0.536592 tig0026362:-63691 None:intergenic
AGACAGTCGAATTTCTTCCC+TGG 0.541530 tig0026362:+63589 Msa1428520:CDS
CAAGCTTGTAATCACGATGA+AGG 0.577496 tig0026362:-58161 None:intergenic
TCATTAATCACCAACTGCAA+TGG 0.581743 tig0026362:-63811 None:intergenic
CCTGTTGAGTATGGGATTGG+TGG 0.582093 tig0026362:-58185 None:intergenic
AGATTAGCTTCGTTCTTCGC+CGG 0.587795 tig0026362:+58105 Msa1428520:CDS
ATACCTGTTGAGTATGGGAT+TGG 0.603433 tig0026362:-58188 None:intergenic
ACGACGTCGCTGCAAGAAAG+GGG 0.606927 tig0026362:+57944 None:intergenic
TGATTAATGAACATCTGGGA+TGG 0.619153 tig0026362:+63824 Msa1428520:three_prime_UTR
CTGTTGAGTATGGGATTGGT+GGG 0.621413 tig0026362:-58184 None:intergenic
GGAGAATACCTGTTGAGTAT+GGG 0.625186 tig0026362:-58193 None:intergenic
GTCACCATAAGTCTTCGGAT+CGG 0.633003 tig0026362:+63700 Msa1428520:three_prime_UTR
GATTAATGAACATCTGGGAT+GGG 0.635717 tig0026362:+63825 Msa1428520:three_prime_UTR
ATCTTGAGAGAAAGAAAATG+GGG 0.673965 tig0026362:+58067 Msa1428520:exon
GCATCGTGAGAAGAAGAAAG+GGG 0.691960 tig0026362:+58018 Msa1428520:five_prime_UTR
TTGGTGATTAATGAACATCT+GGG 0.717880 tig0026362:+63820 Msa1428520:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTATTCAACTAAAAAA+AGG - tig0026362:58357-58376 None:intergenic 10.0%
!! TAAAAAATTATATAGAAGTA+AGG - tig0026362:58926-58945 None:intergenic 10.0%
!!! TTTATTTTATTTCCTTAATT+TGG + tig0026362:59384-59403 Msa1428520:intron 10.0%
!! GTTCTTTATAAAATAATTTA+TGG + tig0026362:61003-61022 Msa1428520:intron 10.0%
!!! TTTTTTTTTCTTGAATTATA+TGG - tig0026362:62167-62186 None:intergenic 10.0%
!! TAATACAAAAAATTGAATAT+GGG - tig0026362:62887-62906 None:intergenic 10.0%
!! ATAATACAAAAAATTGAATA+TGG - tig0026362:62888-62907 None:intergenic 10.0%
!!! TTGTTGTATAATATTTTTTG+TGG - tig0026362:59789-59808 None:intergenic 15.0%
!!! TATGTTTTACAAACAATTTT+TGG + tig0026362:59814-59833 Msa1428520:intron 15.0%
!!! ATGTTTTACAAACAATTTTT+GGG + tig0026362:59815-59834 Msa1428520:intron 15.0%
!!! TTTTTTGAACAAATGTATTT+TGG + tig0026362:63750-63769 Msa1428520:three_prime_UTR 15.0%
!!! TGATTTAGCTTTTTGATTTT+TGG + tig0026362:58294-58313 Msa1428520:intron 20.0%
!!! TTTGATTTTTGGTTAGAAAT+AGG + tig0026362:58305-58324 Msa1428520:intron 20.0%
!!! TAGTTGAATAATTATTTCTC+TGG + tig0026362:58362-58381 Msa1428520:intron 20.0%
!!! AGTTGAATAATTATTTCTCT+GGG + tig0026362:58363-58382 Msa1428520:intron 20.0%
!!! ATTATATAGAAGTAAGGTTT+TGG - tig0026362:58920-58939 None:intergenic 20.0%
!!! ATGAATGATCTATCAAATTT+TGG - tig0026362:59154-59173 None:intergenic 20.0%
!! AAAGATAATGCTCAAATTAA+AGG - tig0026362:59242-59261 None:intergenic 20.0%
!!! TTTCTTTGGAACTTTAAATT+TGG + tig0026362:59528-59547 Msa1428520:intron 20.0%
!!! TTCTTTGGAACTTTAAATTT+GGG + tig0026362:59529-59548 Msa1428520:intron 20.0%
!!! AAAAGTTGAAAAAGCTTTAA+AGG + tig0026362:60056-60075 Msa1428520:intron 20.0%
!! GAGACTCAATTAAATAAATA+GGG + tig0026362:60225-60244 Msa1428520:intron 20.0%
!! AGACTCAATTAAATAAATAG+GGG + tig0026362:60226-60245 Msa1428520:intron 20.0%
!!! TGTATTATAACCTTGTTTAT+AGG + tig0026362:60514-60533 Msa1428520:intron 20.0%
!!! TTCAATACTCTTAATTTTAG+GGG - tig0026362:60626-60645 None:intergenic 20.0%
!!! CTTCAATACTCTTAATTTTA+GGG - tig0026362:60627-60646 None:intergenic 20.0%
!!! CTAAAATTAAGAGTATTGAA+GGG + tig0026362:60626-60645 Msa1428520:intron 20.0%
!! AATTTATGGTTCTTCATTTA+CGG + tig0026362:61017-61036 Msa1428520:intron 20.0%
!! CTTATACTTATTATCTTCAA+TGG - tig0026362:62236-62255 None:intergenic 20.0%
!! AAGACATATGAAATTGAAAT+GGG + tig0026362:62263-62282 Msa1428520:intron 20.0%
!!! TAATTTTGGAGAATTAGTTA+GGG + tig0026362:63115-63134 Msa1428520:intron 20.0%
!! AGGATACTTAATGAATAAAT+AGG + tig0026362:63148-63167 Msa1428520:intron 20.0%
!! GGATACTTAATGAATAAATA+GGG + tig0026362:63149-63168 Msa1428520:intron 20.0%
!! GATACTTAATGAATAAATAG+GGG + tig0026362:63150-63169 Msa1428520:intron 20.0%
!! ATACTTAATGAATAAATAGG+GGG + tig0026362:63151-63170 Msa1428520:intron 20.0%
!!! AACATGAACATTTGTTAATT+TGG + tig0026362:63189-63208 Msa1428520:intron 20.0%
!! AAAAAAATCCAAAATACATC+CGG - tig0026362:63734-63753 None:intergenic 20.0%
! AATCTTGAGAGAAAGAAAAT+GGG + tig0026362:58066-58085 Msa1428520:exon 25.0%
! TTAACTAACATGAATCTTGT+GGG - tig0026362:58217-58236 None:intergenic 25.0%
! ATTAACTAACATGAATCTTG+TGG - tig0026362:58218-58237 None:intergenic 25.0%
!! TGTTTGTGTTAGTGTTTTAT+AGG + tig0026362:58498-58517 Msa1428520:intron 25.0%
!! GTTTGTGTTAGTGTTTTATA+GGG + tig0026362:58499-58518 Msa1428520:intron 25.0%
! CATATTCTGCAAAATGTAAA+TGG - tig0026362:58684-58703 None:intergenic 25.0%
! ATAACATAGATTACTGCATT+GGG - tig0026362:58741-58760 None:intergenic 25.0%
! TATAACATAGATTACTGCAT+TGG - tig0026362:58742-58761 None:intergenic 25.0%
! ATCTATGTTATAAGTTTCCA+AGG + tig0026362:58750-58769 Msa1428520:intron 25.0%
! TTATAAGTTTCCAAGGAATT+GGG + tig0026362:58757-58776 Msa1428520:intron 25.0%
!!! AATTTTGGTTTTACTTGACA+AGG - tig0026362:59139-59158 None:intergenic 25.0%
!! TGCATATGACAATTATGTTT+TGG - tig0026362:59197-59216 None:intergenic 25.0%
! CAAAACAAGTCTTAAAGATA+AGG - tig0026362:59330-59349 None:intergenic 25.0%
! AAATAAATCCAGTAGATGAT+AGG - tig0026362:59371-59390 None:intergenic 25.0%
! TATACATTTATAGTCATGTG+TGG + tig0026362:59616-59635 Msa1428520:intron 25.0%
! ATACATTTATAGTCATGTGT+GGG + tig0026362:59617-59636 Msa1428520:intron 25.0%
! TTTAAAGGTAGTATTCTGTT+AGG + tig0026362:60071-60090 Msa1428520:intron 25.0%
! GGAGACTCAATTAAATAAAT+AGG + tig0026362:60224-60243 Msa1428520:intron 25.0%
! GACTCAATTAAATAAATAGG+GGG + tig0026362:60227-60246 Msa1428520:intron 25.0%
! TTTATTGAATGCTTGAGAAT+AGG - tig0026362:60349-60368 None:intergenic 25.0%
! AGGTTATAATACATACTTGT+GGG - tig0026362:60507-60526 None:intergenic 25.0%
! AAGGTTATAATACATACTTG+TGG - tig0026362:60508-60527 None:intergenic 25.0%
!! TCAATACTCTTAATTTTAGG+GGG - tig0026362:60625-60644 None:intergenic 25.0%
!! CCTTCAATACTCTTAATTTT+AGG - tig0026362:60628-60647 None:intergenic 25.0%
!!! CCTAAAATTAAGAGTATTGA+AGG + tig0026362:60625-60644 Msa1428520:intron 25.0%
! AAAATAGATACATGATTGCA+AGG + tig0026362:60687-60706 Msa1428520:intron 25.0%
! AGAAATTCCGATATTCAATT+AGG + tig0026362:60765-60784 Msa1428520:intron 25.0%
!!! TTGATTATCTTCTAGCTTAT+AGG + tig0026362:60979-60998 Msa1428520:intron 25.0%
! AAAAGTTCTTATACAAGCTT+TGG + tig0026362:61040-61059 Msa1428520:intron 25.0%
! TAAATAATGACACCAATTTG+GGG - tig0026362:61895-61914 None:intergenic 25.0%
! CTAAATAATGACACCAATTT+GGG - tig0026362:61896-61915 None:intergenic 25.0%
!! ATTATTTAGGTTCATGTACA+CGG + tig0026362:61907-61926 Msa1428520:intron 25.0%
! ATTGAGAGATATTTGATTGT+GGG - tig0026362:62094-62113 None:intergenic 25.0%
! ATAAAGAGTAGAGAAAGAAA+TGG + tig0026362:62192-62211 Msa1428520:intron 25.0%
! GAAGACATATGAAATTGAAA+TGG + tig0026362:62262-62281 Msa1428520:intron 25.0%
! AGACATATGAAATTGAAATG+GGG + tig0026362:62264-62283 Msa1428520:intron 25.0%
!! ATTATACTTTAAGAGCAGTA+AGG + tig0026362:62420-62439 Msa1428520:intron 25.0%
!!! ATTTTTTGCTCAAGTCTTTT+GGG - tig0026362:62834-62853 None:intergenic 25.0%
!!! AATTTTTTGCTCAAGTCTTT+TGG - tig0026362:62835-62854 None:intergenic 25.0%
! TTGAGCAAAAAATTTCTCTA+AGG + tig0026362:62841-62860 Msa1428520:intron 25.0%
! ATTATATTTCAGCAAACACT+CGG + tig0026362:62903-62922 Msa1428520:intron 25.0%
!!! GTAATTTTGGAGAATTAGTT+AGG + tig0026362:63114-63133 Msa1428520:intron 25.0%
! TTCTATAATTTCCATTTGCA+TGG + tig0026362:63322-63341 Msa1428520:intron 25.0%
! TTCTATTTAGTTACTGCAAA+TGG + tig0026362:63886-63905 Msa1428520:three_prime_UTR 25.0%
CAATCTTGAGAGAAAGAAAA+TGG + tig0026362:58065-58084 Msa1428520:exon 30.0%
ATCTTGAGAGAAAGAAAATG+GGG + tig0026362:58067-58086 Msa1428520:exon 30.0%
AAGGATTATCATAATCGCAT+AGG - tig0026362:58338-58357 None:intergenic 30.0%
!! TAATTATTTCTCTGGGATGT+CGG + tig0026362:58370-58389 Msa1428520:intron 30.0%
TGAAATGTAACTACATGCAT+AGG - tig0026362:58410-58429 None:intergenic 30.0%
ATAGTGTACATGGTTTATCT+TGG + tig0026362:58545-58564 Msa1428520:intron 30.0%
TAGTGTACATGGTTTATCTT+GGG + tig0026362:58546-58565 Msa1428520:intron 30.0%
! TACCAGGATTCTTGTTTATT+GGG + tig0026362:58583-58602 Msa1428520:intron 30.0%
GTTATAAGTTTCCAAGGAAT+TGG + tig0026362:58756-58775 Msa1428520:intron 30.0%
TATAAGTTTCCAAGGAATTG+GGG + tig0026362:58758-58777 Msa1428520:intron 30.0%
!!! TATAGAAGTAAGGTTTTGGA+GGG - tig0026362:58916-58935 None:intergenic 30.0%
!! ATATAGAAGTAAGGTTTTGG+AGG - tig0026362:58917-58936 None:intergenic 30.0%
TAAAAAGTTAGCTATCCAGT+GGG + tig0026362:59062-59081 Msa1428520:intron 30.0%
!!! ATGTTTTGGTTGTATCAAGT+AGG - tig0026362:59183-59202 None:intergenic 30.0%
GCACTATTTGAAAATGGAAA+GGG - tig0026362:59291-59310 None:intergenic 30.0%
TGCACTATTTGAAAATGGAA+AGG - tig0026362:59292-59311 None:intergenic 30.0%
! TTCCATTTTCAAATAGTGCA+TGG + tig0026362:59292-59311 Msa1428520:intron 30.0%
! ATAGTCAAAGTTTTCGTGAA+AGG + tig0026362:59503-59522 Msa1428520:intron 30.0%
ATGGAAAACCACATTCATTA+GGG - tig0026362:59706-59725 None:intergenic 30.0%
AATGGAAAACCACATTCATT+AGG - tig0026362:59707-59726 None:intergenic 30.0%
! GTTTTCCATTGTCCAATAAA+GGG + tig0026362:59717-59736 Msa1428520:intron 30.0%
TGCGAATCATAAACAATTAG+GGG - tig0026362:59766-59785 None:intergenic 30.0%
GTGCGAATCATAAACAATTA+GGG - tig0026362:59767-59786 None:intergenic 30.0%
! TCTACATGGTAATGTGATTA+AGG - tig0026362:59936-59955 None:intergenic 30.0%
CATTACCATGTAGAAAATGA+TGG + tig0026362:59942-59961 Msa1428520:intron 30.0%
AGTATTCTGTTAGGATAGAA+AGG + tig0026362:60080-60099 Msa1428520:intron 30.0%
! GAGTTAGTTGAGATTAGTTA+GGG + tig0026362:60187-60206 Msa1428520:intron 30.0%
CAACGAAGAGAAAAAGAAAA+TGG - tig0026362:60396-60415 None:intergenic 30.0%
TTCGTTGAGTTCTTAACAAA+TGG + tig0026362:60409-60428 Msa1428520:intron 30.0%
TCGTTGAGTTCTTAACAAAT+GGG + tig0026362:60410-60429 Msa1428520:intron 30.0%
ATGCTAGAATCCTATAAACA+AGG - tig0026362:60527-60546 None:intergenic 30.0%
AAAGATGCAAGAACTTGATT+TGG + tig0026362:60580-60599 Msa1428520:intron 30.0%
!! CAAGAACTTGATTTGGAAAA+AGG + tig0026362:60587-60606 Msa1428520:intron 30.0%
!! AACTTGATTTGGAAAAAGGT+AGG + tig0026362:60591-60610 Msa1428520:intron 30.0%
!! AATTAAGAGTATTGAAGGGA+TGG + tig0026362:60630-60649 Msa1428520:intron 30.0%
!! ATTAAGAGTATTGAAGGGAT+GGG + tig0026362:60631-60650 Msa1428520:intron 30.0%
! AGAAAGACTATATTTGGTTC+CGG - tig0026362:60871-60890 None:intergenic 30.0%
GCTGAAATAACTTCATACTA+CGG + tig0026362:60928-60947 Msa1428520:intron 30.0%
TAAGATAGGCACACATATTA+GGG + tig0026362:61206-61225 Msa1428520:intron 30.0%
TTTCAGTTTCTAATAAGGAG+AGG + tig0026362:61540-61559 Msa1428520:intron 30.0%
TTTCTAATAAGGAGAGGAAA+AGG + tig0026362:61546-61565 Msa1428520:intron 30.0%
TACAAAACACTCTCTCAATA+AGG - tig0026362:61580-61599 None:intergenic 30.0%
GAACTCAAAAAATGTATTGG+AGG - tig0026362:61707-61726 None:intergenic 30.0%
GAGGAACTCAAAAAATGTAT+TGG - tig0026362:61710-61729 None:intergenic 30.0%
CCTAAATAATGACACCAATT+TGG - tig0026362:61897-61916 None:intergenic 30.0%
!! CCAAATTGGTGTCATTATTT+AGG + tig0026362:61894-61913 Msa1428520:intron 30.0%
GATTGAGAGATATTTGATTG+TGG - tig0026362:62095-62114 None:intergenic 30.0%
ATCAAATATCTCTCAATCAG+AGG + tig0026362:62097-62116 Msa1428520:intron 30.0%
ACTTATTATCTTCAATGGCA+AGG - tig0026362:62231-62250 None:intergenic 30.0%
GACATATGAAATTGAAATGG+GGG + tig0026362:62265-62284 Msa1428520:intron 30.0%
TAAAGAACACAACTAACTGA+AGG + tig0026362:62310-62329 Msa1428520:intron 30.0%
AACAATAACATGATCTTGTG+TGG + tig0026362:62493-62512 Msa1428520:intron 30.0%
CAATAAACTCACATACAAAG+TGG - tig0026362:62617-62636 None:intergenic 30.0%
CTTTGTATGTGAGTTTATTG+TGG + tig0026362:62617-62636 Msa1428520:intron 30.0%
! AGAGACCAAAACATTTTTGT+TGG - tig0026362:62665-62684 None:intergenic 30.0%
!!! TGTTTTTTGAACAACCAAAG+CGG - tig0026362:62762-62781 None:intergenic 30.0%
TTGGTTGTTCAAAAAACAAC+AGG + tig0026362:62764-62783 Msa1428520:intron 30.0%
TGGTTGTTCAAAAAACAACA+GGG + tig0026362:62765-62784 Msa1428520:intron 30.0%
!!! TTTTTTGCTCAAGTCTTTTG+GGG - tig0026362:62833-62852 None:intergenic 30.0%
TTATATTTCAGCAAACACTC+GGG + tig0026362:62904-62923 Msa1428520:intron 30.0%
TTAGTTAGGGTAATTAGTTG+AGG + tig0026362:63128-63147 Msa1428520:intron 30.0%
GAAATACAATTCTCCTTCAA+AGG - tig0026362:63252-63271 None:intergenic 30.0%
AGAAACAAAAACGAACACAA+AGG - tig0026362:63306-63325 None:intergenic 30.0%
!! AGTTTGTTTCAGTTTTTCCA+GGG - tig0026362:63609-63628 None:intergenic 30.0%
ACAAACTGAAACTTCACAAT+AGG + tig0026362:63622-63641 Msa1428520:CDS 30.0%
! TTGGTGATTAATGAACATCT+GGG + tig0026362:63820-63839 Msa1428520:three_prime_UTR 30.0%
!!! TTGCATTCTATTTTTGAAGC+TGG + tig0026362:63854-63873 Msa1428520:three_prime_UTR 30.0%
!!! TGCATTCTATTTTTGAAGCT+GGG + tig0026362:63855-63874 Msa1428520:three_prime_UTR 30.0%
TTTAGTTACTGCAAATGGTT+TGG + tig0026362:63891-63910 Msa1428520:three_prime_UTR 30.0%
TCTCAAGATTGATTGATTGC+AGG - tig0026362:58056-58075 None:intergenic 35.0%
CAATAAACAAGAATCCTGGT+AGG - tig0026362:58584-58603 None:intergenic 35.0%
! CTACCAGGATTCTTGTTTAT+TGG + tig0026362:58582-58601 Msa1428520:intron 35.0%
! ATTCTTGTTTATTGGGAGTG+AGG + tig0026362:58590-58609 Msa1428520:intron 35.0%
TTGAGCTTAGATAATACTCG+AGG + tig0026362:58637-58656 Msa1428520:intron 35.0%
TGAGCTTAGATAATACTCGA+GGG + tig0026362:58638-58657 Msa1428520:intron 35.0%
! CATTTTGCAGAATATGTGAG+TGG + tig0026362:58688-58707 Msa1428520:intron 35.0%
GGCATGTATGAGTTATTTAG+AGG + tig0026362:58709-58728 Msa1428520:intron 35.0%
!!! AAGGCATTTTTTTGAGAGAG+TGG + tig0026362:58833-58852 Msa1428520:intron 35.0%
ACACAAAATCCCCTCAAAAT+GGG - tig0026362:58954-58973 None:intergenic 35.0%
AACACAAAATCCCCTCAAAA+TGG - tig0026362:58955-58974 None:intergenic 35.0%
! CACTGGATAGCTAACTTTTT+AGG - tig0026362:59063-59082 None:intergenic 35.0%
CTAAAAAGTTAGCTATCCAG+TGG + tig0026362:59061-59080 Msa1428520:intron 35.0%
GTATTTAATGATCTTCCCAC+TGG - tig0026362:59080-59099 None:intergenic 35.0%
GACCATGCACTATTTGAAAA+TGG - tig0026362:59297-59316 None:intergenic 35.0%
TAAATCCAGTAGATGATAGG+AGG - tig0026362:59368-59387 None:intergenic 35.0%
!! GATTTTGTTTCTCACCTTCT+TGG + tig0026362:59414-59433 Msa1428520:intron 35.0%
TTCTCACCTTCTTGGATATA+CGG + tig0026362:59422-59441 Msa1428520:intron 35.0%
!! TTTCGTGAAAGGTGTTTCTT+TGG + tig0026362:59514-59533 Msa1428520:intron 35.0%
ACAACTGAAACGCTAACAAA+AGG - tig0026362:59587-59606 None:intergenic 35.0%
! GGTTTTCCATTGTCCAATAA+AGG + tig0026362:59716-59735 Msa1428520:intron 35.0%
ATTGTCCAATAAAGGGAATC+CGG + tig0026362:59724-59743 Msa1428520:intron 35.0%
GAATCATAAACAATTAGGGG+GGG - tig0026362:59763-59782 None:intergenic 35.0%
CGAATCATAAACAATTAGGG+GGG - tig0026362:59764-59783 None:intergenic 35.0%
GCGAATCATAAACAATTAGG+GGG - tig0026362:59765-59784 None:intergenic 35.0%
GGTGCGAATCATAAACAATT+AGG - tig0026362:59768-59787 None:intergenic 35.0%
TTTCTTTCTACTCTCTTGTG+TGG + tig0026362:59872-59891 Msa1428520:intron 35.0%
! TGTTGCCATCATTTTCTACA+TGG - tig0026362:59950-59969 None:intergenic 35.0%
AAAGGTAGAGTAGAATGAAG+AGG + tig0026362:60098-60117 Msa1428520:intron 35.0%
GAGAATCGAGTAGAATGAAA+AGG + tig0026362:60165-60184 Msa1428520:intron 35.0%
! GGAGTTAGTTGAGATTAGTT+AGG + tig0026362:60186-60205 Msa1428520:intron 35.0%
TAGTTAGGGTAGTAGTTAGT+TGG + tig0026362:60201-60220 Msa1428520:intron 35.0%
AGTTAGGGTAGTAGTTAGTT+GGG + tig0026362:60202-60221 Msa1428520:intron 35.0%
AATAGGGGGAAATAGTAGAA+AGG + tig0026362:60241-60260 Msa1428520:intron 35.0%
AGCAGTGGTTCAATTGTAAA+AGG + tig0026362:60296-60315 Msa1428520:intron 35.0%
GCAGTGGTTCAATTGTAAAA+GGG + tig0026362:60297-60316 Msa1428520:intron 35.0%
CAGTGGTTCAATTGTAAAAG+GGG + tig0026362:60298-60317 Msa1428520:intron 35.0%
! ATTGTAAAAGGGGAAAGCAT+TGG + tig0026362:60308-60327 Msa1428520:intron 35.0%
AAAATAGATCCACTAGGTCT+AGG - tig0026362:60441-60460 None:intergenic 35.0%
!! TAGACCTAGTGGATCTATTT+TGG + tig0026362:60440-60459 Msa1428520:intron 35.0%
!! AGACCTAGTGGATCTATTTT+GGG + tig0026362:60441-60460 Msa1428520:intron 35.0%
GGGAAGAAATGTAGAATTTG+AGG + tig0026362:60462-60481 Msa1428520:intron 35.0%
TTCTTCCTATTGTTGCAACA+AGG - tig0026362:60749-60768 None:intergenic 35.0%
CTACACGCCTAATTGAATAT+CGG - tig0026362:60775-60794 None:intergenic 35.0%
! TTTTCTCAGAACAGGATTCT+TGG - tig0026362:60808-60827 None:intergenic 35.0%
!!! CAATCTTGTTTTCTCAGAAC+AGG - tig0026362:60816-60835 None:intergenic 35.0%
GGAACCAAATATAGTCTTTC+TGG + tig0026362:60870-60889 Msa1428520:intron 35.0%
TGCACCAGAAAGACTATATT+TGG - tig0026362:60877-60896 None:intergenic 35.0%
TTTCAGCACGTTCTCAAAAA+GGG - tig0026362:60915-60934 None:intergenic 35.0%
ATTTCAGCACGTTCTCAAAA+AGG - tig0026362:60916-60935 None:intergenic 35.0%
GCTAGAAGATAATCAAGACT+GGG - tig0026362:60975-60994 None:intergenic 35.0%
AGCTAGAAGATAATCAAGAC+TGG - tig0026362:60976-60995 None:intergenic 35.0%
GTAAGATAGGCACACATATT+AGG + tig0026362:61205-61224 Msa1428520:intron 35.0%
AACTGAATCTCAGAGTTACA+GGG - tig0026362:61415-61434 None:intergenic 35.0%
TAACTGAATCTCAGAGTTAC+AGG - tig0026362:61416-61435 None:intergenic 35.0%
!! TAGTTGCAGAAGTTTGTTAG+AGG - tig0026362:61491-61510 None:intergenic 35.0%
! AATGTATTGGAGGAGGATTT+TGG - tig0026362:61697-61716 None:intergenic 35.0%
CTCAAAAAATGTATTGGAGG+AGG - tig0026362:61704-61723 None:intergenic 35.0%
AAAGTGGATCTTATTCCCAA+TGG + tig0026362:61864-61883 Msa1428520:intron 35.0%
AAGTGGATCTTATTCCCAAT+GGG + tig0026362:61865-61884 Msa1428520:intron 35.0%
ATTGTAGTCCATTTGCCTAT+AGG - tig0026362:61990-62009 None:intergenic 35.0%
!! TAGGCAAATGGACTACAATT+AGG + tig0026362:61991-62010 Msa1428520:intron 35.0%
! ATGGACTACAATTAGGAAAC+AGG + tig0026362:61998-62017 Msa1428520:intron 35.0%
TACAATTAGGAAACAGGAGA+TGG + tig0026362:62004-62023 Msa1428520:intron 35.0%
!! TGCAATATTCAGCTTTAGGA+AGG - tig0026362:62038-62057 None:intergenic 35.0%
CCAATGCAATATTCAGCTTT+AGG - tig0026362:62042-62061 None:intergenic 35.0%
CCTAAAGCTGAATATTGCAT+TGG + tig0026362:62039-62058 Msa1428520:intron 35.0%
TGATTGTGGGATCTATGATT+GGG - tig0026362:62081-62100 None:intergenic 35.0%
TTGATTGTGGGATCTATGAT+TGG - tig0026362:62082-62101 None:intergenic 35.0%
AAGAGTAGAGAAAGAAATGG+AGG + tig0026362:62195-62214 Msa1428520:intron 35.0%
TATCTTCAATGGCAAGGATT+AGG - tig0026362:62225-62244 None:intergenic 35.0%
AAGAAGTTCGAAGTTGGAAA+GGG + tig0026362:62333-62352 Msa1428520:intron 35.0%
GAAGTTGGAAAGGGAAATTA+GGG + tig0026362:62342-62361 Msa1428520:intron 35.0%
AATAACATGATCTTGTGTGG+TGG + tig0026362:62496-62515 Msa1428520:intron 35.0%
GTGGCAAAACTTTATCTGTA+AGG + tig0026362:62515-62534 Msa1428520:intron 35.0%
ACTGTTAGGATGGATATCTT+CGG + tig0026362:62562-62581 Msa1428520:intron 35.0%
! GCAGACCAACAAAAATGTTT+TGG + tig0026362:62657-62676 Msa1428520:intron 35.0%
TTTAAGCCTTTATTCCACAG+TGG + tig0026362:62721-62740 Msa1428520:intron 35.0%
TTAAGCCTTTATTCCACAGT+GGG + tig0026362:62722-62741 Msa1428520:intron 35.0%
GGTTGTTCAAAAAACAACAG+GGG + tig0026362:62766-62785 Msa1428520:intron 35.0%
TTGATACATGCCTAATTCCA+AGG - tig0026362:63384-63403 None:intergenic 35.0%
AGGATTGAAGACATAGTTCA+CGG - tig0026362:63417-63436 None:intergenic 35.0%
ATCAAAGAGACAGTTGCTAA+TGG - tig0026362:63452-63471 None:intergenic 35.0%
! TGATCCTTCCTTTTCTTGAA+TGG + tig0026362:63468-63487 Msa1428520:intron 35.0%
GTTTGTTTGAAGAGTTTGTG+TGG + tig0026362:63505-63524 Msa1428520:intron 35.0%
! TGAACTTTCTTTTCTTCTGC+AGG + tig0026362:63544-63563 Msa1428520:intron 35.0%
!! CAGTTTGTTTCAGTTTTTCC+AGG - tig0026362:63610-63629 None:intergenic 35.0%
AACTTGTCACCATAAGTCTT+CGG + tig0026362:63695-63714 Msa1428520:three_prime_UTR 35.0%
! TTCTGTATCCGGATGTATTT+TGG + tig0026362:63723-63742 Msa1428520:three_prime_UTR 35.0%
TCATTAATCACCAACTGCAA+TGG - tig0026362:63814-63833 None:intergenic 35.0%
!! GTTGGTGATTAATGAACATC+TGG + tig0026362:63819-63838 Msa1428520:three_prime_UTR 35.0%
TGATTAATGAACATCTGGGA+TGG + tig0026362:63824-63843 Msa1428520:three_prime_UTR 35.0%
! GATTAATGAACATCTGGGAT+GGG + tig0026362:63825-63844 Msa1428520:three_prime_UTR 35.0%
TTCTTCTTCTCACGATGCTT+TGG - tig0026362:58016-58035 None:intergenic 40.0%
! AAGCATCGTGAGAAGAAGAA+AGG + tig0026362:58016-58035 Msa1428520:five_prime_UTR 40.0%
AGCATCGTGAGAAGAAGAAA+GGG + tig0026362:58017-58036 Msa1428520:five_prime_UTR 40.0%
CAAGCTTGTAATCACGATGA+AGG - tig0026362:58164-58183 None:intergenic 40.0%
ATACCTGTTGAGTATGGGAT+TGG - tig0026362:58191-58210 None:intergenic 40.0%
GGAGAATACCTGTTGAGTAT+GGG - tig0026362:58196-58215 None:intergenic 40.0%
TGTCAGTGTCATGTCATGTT+CGG + tig0026362:58475-58494 Msa1428520:intron 40.0%
! GGTATGTATGAGTGAGTTGA+CGG + tig0026362:58520-58539 Msa1428520:intron 40.0%
TAAACAAGAATCCTGGTAGG+TGG - tig0026362:58581-58600 None:intergenic 40.0%
CTCCCAATAAACAAGAATCC+TGG - tig0026362:58588-58607 None:intergenic 40.0%
GAGCTTAGATAATACTCGAG+GGG + tig0026362:58639-58658 Msa1428520:intron 40.0%
AAACTCGCAAACAAAGCCAT+GGG - tig0026362:58791-58810 None:intergenic 40.0%
!!! TTTTTAGCTCCCCCATTTTG+AGG + tig0026362:58940-58959 Msa1428520:intron 40.0%
!!! TTTTAGCTCCCCCATTTTGA+GGG + tig0026362:58941-58960 Msa1428520:intron 40.0%
ACAAAATCCCCTCAAAATGG+GGG - tig0026362:58952-58971 None:intergenic 40.0%
CACAAAATCCCCTCAAAATG+GGG - tig0026362:58953-58972 None:intergenic 40.0%
TTATGAAGCCCCATTCAAGT+TGG + tig0026362:58973-58992 Msa1428520:intron 40.0%
! TATGAAGCCCCATTCAAGTT+GGG + tig0026362:58974-58993 Msa1428520:intron 40.0%
AAGGAGGAAGGGAAAATGAT+AGG - tig0026362:59002-59021 None:intergenic 40.0%
TTAGGCTCTGTTTACGAGTT+TGG - tig0026362:59045-59064 None:intergenic 40.0%
AATCACACATCGAGTGGTAT+GGG - tig0026362:59110-59129 None:intergenic 40.0%
AAATCACACATCGAGTGGTA+TGG - tig0026362:59111-59130 None:intergenic 40.0%
ATACCACTCGATGTGTGATT+TGG + tig0026362:59110-59129 Msa1428520:intron 40.0%
TACCACTCGATGTGTGATTT+GGG + tig0026362:59111-59130 Msa1428520:intron 40.0%
AATCTCCTCCTATCATCTAC+TGG + tig0026362:59360-59379 Msa1428520:intron 40.0%
AAATCGCAGGGTCCAAATTA+AGG - tig0026362:59399-59418 None:intergenic 40.0%
AGGTGAGAAACAAAATCGCA+GGG - tig0026362:59411-59430 None:intergenic 40.0%
AAGGTGAGAAACAAAATCGC+AGG - tig0026362:59412-59431 None:intergenic 40.0%
TGTCATCTCCCTAATGAATG+TGG + tig0026362:59695-59714 Msa1428520:intron 40.0%
GGATTCCCTTTATTGGACAA+TGG - tig0026362:59725-59744 None:intergenic 40.0%
ATAAACAATTAGGGGGGGAA+GGG - tig0026362:59758-59777 None:intergenic 40.0%
ACTCTCTTGTGTGGAATTCA+TGG + tig0026362:59881-59900 Msa1428520:intron 40.0%
TCATTCTACTCGATTCTCCT+CGG - tig0026362:60163-60182 None:intergenic 40.0%
GTTAGGGTAGTAGTTAGTTG+GGG + tig0026362:60203-60222 Msa1428520:intron 40.0%
GCATGAGAAAAACATAGCAG+TGG + tig0026362:60281-60300 Msa1428520:intron 40.0%
!! GACCTAGTGGATCTATTTTG+GGG + tig0026362:60442-60461 Msa1428520:intron 40.0%
TTCCCCAAAATAGATCCACT+AGG - tig0026362:60447-60466 None:intergenic 40.0%
ATGCTGCATCATCTTAAGCT+TGG - tig0026362:60552-60571 None:intergenic 40.0%
AGCTTAAGATGATGCAGCAT+CGG + tig0026362:60552-60571 Msa1428520:intron 40.0%
GGAGGAATCAAGCATACATT+GGG + tig0026362:60652-60671 Msa1428520:intron 40.0%
TACATGATTGCAAGGCGAAA+AGG + tig0026362:60695-60714 Msa1428520:intron 40.0%
AACAAGGCCATATCTGGAAA+CGG - tig0026362:60733-60752 None:intergenic 40.0%
!! TATGGCCTTGTTGCAACAAT+AGG + tig0026362:60741-60760 Msa1428520:intron 40.0%
AAACAACTGCTGTCGAGATT+AGG - tig0026362:60844-60863 None:intergenic 40.0%
CCATAAAACCTGGATCTCTA+AGG - tig0026362:61081-61100 None:intergenic 40.0%
! CCTTAGAGATCCAGGTTTTA+TGG + tig0026362:61078-61097 Msa1428520:intron 40.0%
GGTCTGTTTGAGAGTTTGAA+GGG + tig0026362:61227-61246 Msa1428520:intron 40.0%
TGTTTGAGAGTTTGAAGGGA+AGG + tig0026362:61231-61250 Msa1428520:intron 40.0%
GTTTGAGAGTTTGAAGGGAA+GGG + tig0026362:61232-61251 Msa1428520:intron 40.0%
TTTGAGAGTTTGAAGGGAAG+GGG + tig0026362:61233-61252 Msa1428520:intron 40.0%
ACTGAATCTCAGAGTTACAG+GGG - tig0026362:61414-61433 None:intergenic 40.0%
TGCAACTAACTTCTCCTTCA+AGG + tig0026362:61503-61522 Msa1428520:intron 40.0%
TCTCCTTCAAGGTTCATCAA+TGG + tig0026362:61514-61533 Msa1428520:intron 40.0%
GGCGGTTTCAGTTTCTAATA+AGG + tig0026362:61535-61554 Msa1428520:intron 40.0%
CTAATAAGGAGAGGAAAAGG+CGG + tig0026362:61549-61568 Msa1428520:intron 40.0%
TATGTTTGGGAGTTTAGGAG+GGG - tig0026362:61770-61789 None:intergenic 40.0%
CTATGTTTGGGAGTTTAGGA+GGG - tig0026362:61771-61790 None:intergenic 40.0%
AAGGCTATGTTTGGGAGTTT+AGG - tig0026362:61775-61794 None:intergenic 40.0%
ATGCCACTAAGGCTATGTTT+GGG - tig0026362:61783-61802 None:intergenic 40.0%
! AAACATAGCCTTAGTGGCAT+CGG + tig0026362:61783-61802 Msa1428520:intron 40.0%
CATTGCAAATCTGTCAACTG+TGG + tig0026362:61937-61956 Msa1428520:intron 40.0%
TTTGCCTATAGGTTTCAGCT+TGG - tig0026362:61979-61998 None:intergenic 40.0%
AGCTGAAACCTATAGGCAAA+TGG + tig0026362:61979-61998 Msa1428520:intron 40.0%
TGAAGGAAGAAGTTCGAAGT+TGG + tig0026362:62327-62346 Msa1428520:intron 40.0%
GAAGAAGTTCGAAGTTGGAA+AGG + tig0026362:62332-62351 Msa1428520:intron 40.0%
CGAAGTTGGAAAGGGAAATT+AGG + tig0026362:62341-62360 Msa1428520:intron 40.0%
! GGGAAATTAGGGCATTAAGT+CGG + tig0026362:62353-62372 Msa1428520:intron 40.0%
TAATACCGACACTGTTAGGA+TGG + tig0026362:62552-62571 Msa1428520:intron 40.0%
GATATCCATCCTAACAGTGT+CGG - tig0026362:62560-62579 None:intergenic 40.0%
ACATACAAAGTGGAAGATCC+CGG - tig0026362:62607-62626 None:intergenic 40.0%
TTGAACAACCAAAGCGGAAA+TGG - tig0026362:62756-62775 None:intergenic 40.0%
AAGGATTGCATGATTGCATC+AGG + tig0026362:62860-62879 Msa1428520:intron 40.0%
!! AGGGAGTTAAACTGGTTTGA+AGG + tig0026362:63065-63084 Msa1428520:intron 40.0%
!! GGGAGTTAAACTGGTTTGAA+GGG + tig0026362:63066-63085 Msa1428520:intron 40.0%
AGCAGTGATTCAGTTGCAAA+AGG + tig0026362:63220-63239 Msa1428520:intron 40.0%
GCAGTGATTCAGTTGCAAAA+GGG + tig0026362:63221-63240 Msa1428520:intron 40.0%
CAAAAGGGAGAAACCTTTGA+AGG + tig0026362:63236-63255 Msa1428520:intron 40.0%
GCTAATGGCGAAGAAAATGA+AGG - tig0026362:63437-63456 None:intergenic 40.0%
! TCCTTCCTTTTCTTGAATGG+AGG + tig0026362:63471-63490 Msa1428520:intron 40.0%
! CCTTCCTTTTCTTGAATGGA+GGG + tig0026362:63472-63491 Msa1428520:intron 40.0%
CATTCCCTCCATTCAAGAAA+AGG - tig0026362:63479-63498 None:intergenic 40.0%
! TCTTTTCTTCTGCAGGTGAA+TGG + tig0026362:63551-63570 Msa1428520:intron 40.0%
AGACTTATGGTGACAAGTTG+AGG - tig0026362:63694-63713 None:intergenic 40.0%
! GTTTTTATCGCCATTGCAGT+TGG + tig0026362:63801-63820 Msa1428520:three_prime_UTR 40.0%
GCATCGTGAGAAGAAGAAAG+GGG + tig0026362:58018-58037 Msa1428520:five_prime_UTR 45.0%
!! AGATTAGCTTCGTTCTTCGC+CGG + tig0026362:58105-58124 Msa1428520:CDS 45.0%
! CTGTTGAGTATGGGATTGGT+GGG - tig0026362:58187-58206 None:intergenic 45.0%
GGGAGAATACCTGTTGAGTA+TGG - tig0026362:58197-58216 None:intergenic 45.0%
GTTGACGGAGATAGTGTACA+TGG + tig0026362:58535-58554 Msa1428520:intron 45.0%
AACTCGCAAACAAAGCCATG+GGG - tig0026362:58790-58809 None:intergenic 45.0%
CAAACTCGCAAACAAAGCCA+TGG - tig0026362:58792-58811 None:intergenic 45.0%
!! CATGGCTTTGTTTGCGAGTT+TGG + tig0026362:58790-58809 Msa1428520:intron 45.0%
!! GCTTTGTTTGCGAGTTTGGA+GGG + tig0026362:58794-58813 Msa1428520:intron 45.0%
! CTTTGTTTGCGAGTTTGGAG+GGG + tig0026362:58795-58814 Msa1428520:intron 45.0%
!! TTTAGCTCCCCCATTTTGAG+GGG + tig0026362:58942-58961 Msa1428520:intron 45.0%
ATAGGCTCCCAACTTGAATG+GGG - tig0026362:58984-59003 None:intergenic 45.0%
GATAGGCTCCCAACTTGAAT+GGG - tig0026362:58985-59004 None:intergenic 45.0%
TGATAGGCTCCCAACTTGAA+TGG - tig0026362:58986-59005 None:intergenic 45.0%
TGGGTAAAAGGAAGGAGGAA+GGG - tig0026362:59013-59032 None:intergenic 45.0%
TTGGGTAAAAGGAAGGAGGA+AGG - tig0026362:59014-59033 None:intergenic 45.0%
AAGGTTGGGTAAAAGGAAGG+AGG - tig0026362:59018-59037 None:intergenic 45.0%
TGTTTACGAGTTTGGAGGGA+AGG - tig0026362:59037-59056 None:intergenic 45.0%
GCTCTGTTTACGAGTTTGGA+GGG - tig0026362:59041-59060 None:intergenic 45.0%
CACTTGCCGTATATCCAAGA+AGG - tig0026362:59431-59450 None:intergenic 45.0%
CTTCTTGGATATACGGCAAG+TGG + tig0026362:59429-59448 Msa1428520:intron 45.0%
TAAACAATTAGGGGGGGAAG+GGG - tig0026362:59757-59776 None:intergenic 45.0%
CATAAACAATTAGGGGGGGA+AGG - tig0026362:59759-59778 None:intergenic 45.0%
!!! CCAATTTTGGTGGGCTAGTT+TGG - tig0026362:60138-60157 None:intergenic 45.0%
CCAAACTAGCCCACCAAAAT+TGG + tig0026362:60135-60154 Msa1428520:intron 45.0%
!!! ATTCTCCTCGGTGCCAATTT+TGG - tig0026362:60151-60170 None:intergenic 45.0%
!! GTAAAAGGGGAAAGCATTGG+AGG + tig0026362:60311-60330 Msa1428520:intron 45.0%
!! AAGAGTATTGAAGGGATGGG+AGG + tig0026362:60634-60653 Msa1428520:intron 45.0%
GGGAGGAATCAAGCATACAT+TGG + tig0026362:60651-60670 Msa1428520:intron 45.0%
TCAAGCATACATTGGGTGAG+CGG + tig0026362:60659-60678 Msa1428520:intron 45.0%
TGATTGCAAGGCGAAAAGGT+TGG + tig0026362:60699-60718 Msa1428520:intron 45.0%
GACATGACCGTTTCCAGATA+TGG + tig0026362:60723-60742 Msa1428520:intron 45.0%
TGTTGCAACAAGGCCATATC+TGG - tig0026362:60739-60758 None:intergenic 45.0%
CAGCTAGACTCCATAAAACC+TGG - tig0026362:61091-61110 None:intergenic 45.0%
CAACACAATATGTCAGCCAG+CGG - tig0026362:61147-61166 None:intergenic 45.0%
CTGGCTGACATATTGTGTTG+CGG + tig0026362:61147-61166 Msa1428520:intron 45.0%
CATATTGTGTTGCGGCTAAC+AGG + tig0026362:61155-61174 Msa1428520:intron 45.0%
GGGTCTGTTTGAGAGTTTGA+AGG + tig0026362:61226-61245 Msa1428520:intron 45.0%
TGAAGGGAAGGGGATGAATT+TGG + tig0026362:61243-61262 Msa1428520:intron 45.0%
GAAGGGAAGGGGATGAATTT+GGG + tig0026362:61244-61263 Msa1428520:intron 45.0%
AAGGGAAGGGGATGAATTTG+GGG + tig0026362:61245-61264 Msa1428520:intron 45.0%
GACACATGTCACACTCTGAT+AGG - tig0026362:61356-61375 None:intergenic 45.0%
CCTTCAAGGTTCATCAATGG+CGG + tig0026362:61517-61536 Msa1428520:intron 45.0%
GAGGAGGAAAGGAAAAATGG+AGG - tig0026362:61729-61748 None:intergenic 45.0%
GCTATGTTTGGGAGTTTAGG+AGG - tig0026362:61772-61791 None:intergenic 45.0%
! ACTCCCAAACATAGCCTTAG+TGG + tig0026362:61777-61796 Msa1428520:intron 45.0%
GATGCCACTAAGGCTATGTT+TGG - tig0026362:61784-61803 None:intergenic 45.0%
!! GTTCTGGAGAGGGAGATAAA+GGG + tig0026362:61813-61832 Msa1428520:intron 45.0%
GGGAATAAGATCCACTTTGC+AGG - tig0026362:61862-61881 None:intergenic 45.0%
CTTGCCAAGCTGAAACCTAT+AGG + tig0026362:61972-61991 Msa1428520:intron 45.0%
!!! TTTTCAGCACTGACACGTCT+CGG + tig0026362:62455-62474 Msa1428520:intron 45.0%
CATACAAAGTGGAAGATCCC+GGG - tig0026362:62606-62625 None:intergenic 45.0%
TATTTCAGCAAACACTCGGG+TGG + tig0026362:62907-62926 Msa1428520:intron 45.0%
ATTTCAGCAAACACTCGGGT+GGG + tig0026362:62908-62927 Msa1428520:intron 45.0%
TATTCACCCAGTCCAGTTCA+AGG + tig0026362:62973-62992 Msa1428520:intron 45.0%
AATGAGGTCCAACCTTGAAC+TGG - tig0026362:62988-63007 None:intergenic 45.0%
AGTTCAAGGTTGGACCTCAT+TGG + tig0026362:62987-63006 Msa1428520:intron 45.0%
GTTCAAGGTTGGACCTCATT+GGG + tig0026362:62988-63007 Msa1428520:intron 45.0%
TTCAAGGTTGGACCTCATTG+GGG + tig0026362:62989-63008 Msa1428520:intron 45.0%
! TACGGTCTAAAGTCTGGGTA+GGG - tig0026362:63035-63054 None:intergenic 45.0%
! TTACGGTCTAAAGTCTGGGT+AGG - tig0026362:63036-63055 None:intergenic 45.0%
! CGCTTTACGGTCTAAAGTCT+GGG - tig0026362:63040-63059 None:intergenic 45.0%
! TCGCTTTACGGTCTAAAGTC+TGG - tig0026362:63041-63060 None:intergenic 45.0%
GACTTTAGACCGTAAAGCGA+TGG + tig0026362:63041-63060 Msa1428520:intron 45.0%
TTAGACCGTAAAGCGATGGT+AGG + tig0026362:63045-63064 Msa1428520:intron 45.0%
TAGACCGTAAAGCGATGGTA+GGG + tig0026362:63046-63065 Msa1428520:intron 45.0%
AACTCCCTACCATCGCTTTA+CGG - tig0026362:63053-63072 None:intergenic 45.0%
!! ACTGGTTTGAAGGGATGAAG+AGG + tig0026362:63075-63094 Msa1428520:intron 45.0%
GTTTGAAGGGATGAAGAGGA+GGG + tig0026362:63079-63098 Msa1428520:intron 45.0%
TTTGAAGGGATGAAGAGGAG+GGG + tig0026362:63080-63099 Msa1428520:intron 45.0%
! GGCACTGTACTGGGTAATTT+TGG + tig0026362:63101-63120 Msa1428520:intron 45.0%
TTGGCATTGTGCCATGCAAA+TGG - tig0026362:63336-63355 None:intergenic 45.0%
CGACTACATAGAGCATGCTT+TGG - tig0026362:63355-63374 None:intergenic 45.0%
CCCTCCATTCAAGAAAAGGA+AGG - tig0026362:63475-63494 None:intergenic 45.0%
TTGAATGGAGGGAATGTGTG+AGG + tig0026362:63483-63502 Msa1428520:intron 45.0%
AGACAGTCGAATTTCTTCCC+TGG + tig0026362:63589-63608 Msa1428520:CDS 45.0%
GTCACCATAAGTCTTCGGAT+CGG + tig0026362:63700-63719 Msa1428520:three_prime_UTR 45.0%
AGAACCGATCCGAAGACTTA+TGG - tig0026362:63707-63726 None:intergenic 45.0%
CCTGTTGAGTATGGGATTGG+TGG - tig0026362:58188-58207 None:intergenic 50.0%
CCACCAATCCCATACTCAAC+AGG + tig0026362:58185-58204 Msa1428520:CDS 50.0%
! CTACATGCATAGGTGTCGTG+TGG - tig0026362:58400-58419 None:intergenic 50.0%
TGTTTATTGGGAGTGAGGCC+TGG + tig0026362:58595-58614 Msa1428520:intron 50.0%
GTTTATTGGGAGTGAGGCCT+GGG + tig0026362:58596-58615 Msa1428520:intron 50.0%
TTTATTGGGAGTGAGGCCTG+GGG + tig0026362:58597-58616 Msa1428520:intron 50.0%
CCACATATGTGCATATCCCC+AGG - tig0026362:58616-58635 None:intergenic 50.0%
CCTGGGGATATGCACATATG+TGG + tig0026362:58613-58632 Msa1428520:intron 50.0%
GGGAATGTTCCCCAATTCCT+TGG - tig0026362:58770-58789 None:intergenic 50.0%
GAATTGGGGAACATTCCCCA+TGG + tig0026362:58772-58791 Msa1428520:intron 50.0%
!! GGCTTTGTTTGCGAGTTTGG+AGG + tig0026362:58793-58812 Msa1428520:intron 50.0%
GGGAAGGTTGGGTAAAAGGA+AGG - tig0026362:59021-59040 None:intergenic 50.0%
TGGAGGGAAGGTTGGGTAAA+AGG - tig0026362:59025-59044 None:intergenic 50.0%
ACGAGTTTGGAGGGAAGGTT+GGG - tig0026362:59032-59051 None:intergenic 50.0%
TACGAGTTTGGAGGGAAGGT+TGG - tig0026362:59033-59052 None:intergenic 50.0%
GGCTCTGTTTACGAGTTTGG+AGG - tig0026362:59042-59061 None:intergenic 50.0%
ATCGAGTGGTATGGGATGGA+AGG - tig0026362:59102-59121 None:intergenic 50.0%
ACACATCGAGTGGTATGGGA+TGG - tig0026362:59106-59125 None:intergenic 50.0%
TGCCCAAATCACACATCGAG+TGG - tig0026362:59116-59135 None:intergenic 50.0%
TCCAATAAAGGGAATCCGGC+TGG + tig0026362:59728-59747 Msa1428520:intron 50.0%
ACCAGCCGGATTCCCTTTAT+TGG - tig0026362:59732-59751 None:intergenic 50.0%
TTACGCAGCTGAGACAAGTG+AGG - tig0026362:59980-59999 None:intergenic 50.0%
!!! TCCTCGGTGCCAATTTTGGT+GGG - tig0026362:60147-60166 None:intergenic 50.0%
! CGACAGCAGTTGTTTGTTGC+CGG + tig0026362:60849-60868 Msa1428520:intron 50.0%
AGTAGCTGCCTTAGAGATCC+AGG + tig0026362:61070-61089 Msa1428520:intron 50.0%
TTGTGTTGCGGCTAACAGGT+TGG + tig0026362:61159-61178 Msa1428520:intron 50.0%
TGGCATTAGCAAACTGCCAC+AGG + tig0026362:61179-61198 Msa1428520:intron 50.0%
CTGCCACAGGTGTGTAAGAT+AGG + tig0026362:61192-61211 Msa1428520:intron 50.0%
GTGCCTATCTTACACACCTG+TGG - tig0026362:61198-61217 None:intergenic 50.0%
AGGGAAGGGGATGAATTTGG+GGG + tig0026362:61246-61265 Msa1428520:intron 50.0%
TGTTAGAGGAGAGAGAGAGC+AGG - tig0026362:61477-61496 None:intergenic 50.0%
CCGCCATTGATGAACCTTGA+AGG - tig0026362:61520-61539 None:intergenic 50.0%
GGGGAGGAGGAAAGGAAAAA+TGG - tig0026362:61732-61751 None:intergenic 50.0%
AGGGGAGGACTTTCGGAAAA+GGG - tig0026362:61752-61771 None:intergenic 50.0%
GTTTAGGAGGGGAGGACTTT+CGG - tig0026362:61759-61778 None:intergenic 50.0%
!! GGTTCTGGAGAGGGAGATAA+AGG + tig0026362:61812-61831 Msa1428520:intron 50.0%
TGGAGAGGGAGATAAAGGGA+GGG + tig0026362:61817-61836 Msa1428520:intron 50.0%
AGCAGTAGCATCCTGCAAAG+TGG + tig0026362:61848-61867 Msa1428520:intron 50.0%
! CAATTTGGGGCAAGCCCATT+GGG - tig0026362:61882-61901 None:intergenic 50.0%
ATGATTGGGAGCTGATGCTC+AGG - tig0026362:62067-62086 None:intergenic 50.0%
AATCAGAGGTCCCTCAAAGC+AGG + tig0026362:62111-62130 Msa1428520:intron 50.0%
ATCAGAGGTCCCTCAAAGCA+GGG + tig0026362:62112-62131 Msa1428520:intron 50.0%
TCTGTAAGGCCTAGCTGAAG+CGG + tig0026362:62529-62548 Msa1428520:intron 50.0%
TCGGTATTACCGCTTCAGCT+AGG - tig0026362:62541-62560 None:intergenic 50.0%
GCGGTAATACCGACACTGTT+AGG + tig0026362:62548-62567 Msa1428520:intron 50.0%
GATATCTTCGGTGATGTCCC+AGG + tig0026362:62574-62593 Msa1428520:intron 50.0%
AGCGACCCACTGTGGAATAA+AGG - tig0026362:62730-62749 None:intergenic 50.0%
!!! TGCTCAAGTCTTTTGGGGCA+GGG - tig0026362:62828-62847 None:intergenic 50.0%
!!! TTGCTCAAGTCTTTTGGGGC+AGG - tig0026362:62829-62848 None:intergenic 50.0%
TTTCAGCAAACACTCGGGTG+GGG + tig0026362:62909-62928 Msa1428520:intron 50.0%
GTCCAACCTTGAACTGGACT+GGG - tig0026362:62982-63001 None:intergenic 50.0%
GCGATGGTAGGGAGTTAAAC+TGG + tig0026362:63057-63076 Msa1428520:intron 50.0%
GGTTTGAAGGGATGAAGAGG+AGG + tig0026362:63078-63097 Msa1428520:intron 50.0%
CTATGTAGTCGCGACTTCCT+TGG + tig0026362:63364-63383 Msa1428520:intron 50.0%
GTCGCGACTTCCTTGGAATT+AGG + tig0026362:63371-63390 Msa1428520:intron 50.0%
! CTTCGGATCGGTTCTGTATC+CGG + tig0026362:63712-63731 Msa1428520:three_prime_UTR 50.0%
GGTTAGAGACTCCACCTACC+AGG + tig0026362:58567-58586 Msa1428520:intron 55.0%
TGTTTGCGAGTTTGGAGGGG+AGG + tig0026362:58798-58817 Msa1428520:intron 55.0%
GTTTGCGAGTTTGGAGGGGA+GGG + tig0026362:58799-58818 Msa1428520:intron 55.0%
TTTGCGAGTTTGGAGGGGAG+GGG + tig0026362:58800-58819 Msa1428520:intron 55.0%
GCAGCTGAGACAAGTGAGGA+AGG - tig0026362:59976-59995 None:intergenic 55.0%
!!! CTCCTCGGTGCCAATTTTGG+TGG - tig0026362:60148-60167 None:intergenic 55.0%
TGGGTCTGTCCTAGACCTAG+TGG + tig0026362:60429-60448 Msa1428520:intron 55.0%
ACAATATGTCAGCCAGCGGC+TGG - tig0026362:61143-61162 None:intergenic 55.0%
GGGAAGGGGATGAATTTGGG+GGG + tig0026362:61247-61266 Msa1428520:intron 55.0%
AAGGGGATGAATTTGGGGGG+AGG + tig0026362:61250-61269 Msa1428520:intron 55.0%
GATGAATTTGGGGGGAGGTG+AGG + tig0026362:61255-61274 Msa1428520:intron 55.0%
TCGGAAAAGGGGAGGAGGAA+AGG - tig0026362:61740-61759 None:intergenic 55.0%
GACTTTCGGAAAAGGGGAGG+AGG - tig0026362:61745-61764 None:intergenic 55.0%
GAGGACTTTCGGAAAAGGGG+AGG - tig0026362:61748-61767 None:intergenic 55.0%
GGGGAGGACTTTCGGAAAAG+GGG - tig0026362:61751-61770 None:intergenic 55.0%
GAGGGGAGGACTTTCGGAAA+AGG - tig0026362:61753-61772 None:intergenic 55.0%
GTTTGGGAGTTTAGGAGGGG+AGG - tig0026362:61767-61786 None:intergenic 55.0%
! CATAGCCTTAGTGGCATCGG+TGG + tig0026362:61786-61805 Msa1428520:intron 55.0%
CCAAACCACCGATGCCACTA+AGG - tig0026362:61794-61813 None:intergenic 55.0%
!! CCTTAGTGGCATCGGTGGTT+TGG + tig0026362:61791-61810 Msa1428520:intron 55.0%
!! TGGCATCGGTGGTTTGGTTC+TGG + tig0026362:61797-61816 Msa1428520:intron 55.0%
!! TCGGTGGTTTGGTTCTGGAG+AGG + tig0026362:61802-61821 Msa1428520:intron 55.0%
!! CGGTGGTTTGGTTCTGGAGA+GGG + tig0026362:61803-61822 Msa1428520:intron 55.0%
CTGGAGAGGGAGATAAAGGG+AGG + tig0026362:61816-61835 Msa1428520:intron 55.0%
GGAGAGGGAGATAAAGGGAG+GGG + tig0026362:61818-61837 Msa1428520:intron 55.0%
! CCAATTTGGGGCAAGCCCAT+TGG - tig0026362:61883-61902 None:intergenic 55.0%
! CCAATGGGCTTGCCCCAAAT+TGG + tig0026362:61880-61899 Msa1428520:intron 55.0%
TCAGAGGTCCCTCAAAGCAG+GGG + tig0026362:62113-62132 Msa1428520:intron 55.0%
TGATGTCCCAGGTTTGAGCC+CGG + tig0026362:62585-62604 Msa1428520:intron 55.0%
AAGATCCCGGGCTCAAACCT+GGG - tig0026362:62594-62613 None:intergenic 55.0%
TCGCTGCTCCATTTCCGCTT+TGG + tig0026362:62745-62764 Msa1428520:intron 55.0%
AGCTGTGTGGATGATCCTGG+GGG - tig0026362:62798-62817 None:intergenic 55.0%
GAGCTGTGTGGATGATCCTG+GGG - tig0026362:62799-62818 None:intergenic 55.0%
GGAGCTGTGTGGATGATCCT+GGG - tig0026362:62800-62819 None:intergenic 55.0%
AGGAGCTGTGTGGATGATCC+TGG - tig0026362:62801-62820 None:intergenic 55.0%
!!! CTCAAGTCTTTTGGGGCAGG+GGG - tig0026362:62826-62845 None:intergenic 55.0%
!!! GCTCAAGTCTTTTGGGGCAG+GGG - tig0026362:62827-62846 None:intergenic 55.0%
CACCCAGTCCAGTTCAAGGT+TGG + tig0026362:62977-62996 Msa1428520:intron 55.0%
GGTCCAACCTTGAACTGGAC+TGG - tig0026362:62983-63002 None:intergenic 55.0%
!! GCTTTTGGTTGGCCCCAATG+AGG - tig0026362:63004-63023 None:intergenic 55.0%
! GGGCCAACCAAAAGCACAAC+TGG + tig0026362:63009-63028 Msa1428520:intron 55.0%
! GGGCCAGTTGTGCTTTTGGT+TGG - tig0026362:63015-63034 None:intergenic 55.0%
! GGTAGGGCCAGTTGTGCTTT+TGG - tig0026362:63019-63038 None:intergenic 55.0%
!! AAGAGGAGGGGCACTGTACT+GGG + tig0026362:63092-63111 Msa1428520:intron 55.0%
! AAGAAAGGGGCACGCGCGTT+CGG + tig0026362:57957-57976 Msa1428520:five_prime_UTR 60.0%
!! GTTCTTCGCCGGTGCTGCAA+CGG + tig0026362:58116-58135 Msa1428520:CDS 60.0%
AAACGACGCCGTTGCAGCAC+CGG - tig0026362:58127-58146 None:intergenic 60.0%
TTGGAGGGGAGGGGAAGAGA+AGG + tig0026362:58809-58828 Msa1428520:intron 60.0%
TGGAGGGGAGGGGAAGAGAA+GGG + tig0026362:58810-58829 Msa1428520:intron 60.0%
GCCCACCAAAATTGGCACCG+AGG + tig0026362:60143-60162 Msa1428520:intron 60.0%
TGGTGGCTTCAATGGCGGTG+GGG - tig0026362:61123-61142 None:intergenic 60.0%
CTGGTGGCTTCAATGGCGGT+GGG - tig0026362:61124-61143 None:intergenic 60.0%
ATATGTCAGCCAGCGGCTGG+TGG - tig0026362:61140-61159 None:intergenic 60.0%
TAGCTCCGCCCCTGCTTTGA+GGG - tig0026362:62124-62143 None:intergenic 60.0%
CGGAGCTAGGACTGAGTGGT+GGG + tig0026362:62136-62155 Msa1428520:intron 60.0%
! AGCTAGGACTGAGTGGTGGG+AGG + tig0026362:62139-62158 Msa1428520:intron 60.0%
! GCTAGGACTGAGTGGTGGGA+GGG + tig0026362:62140-62159 Msa1428520:intron 60.0%
GATGTCCCAGGTTTGAGCCC+GGG + tig0026362:62586-62605 Msa1428520:intron 60.0%
GAAGATCCCGGGCTCAAACC+TGG - tig0026362:62595-62614 None:intergenic 60.0%
AATGGAGCAGCGACCCACTG+TGG - tig0026362:62738-62757 None:intergenic 60.0%
GCTGTGTGGATGATCCTGGG+GGG - tig0026362:62797-62816 None:intergenic 60.0%
!! GAAGAGGAGGGGCACTGTAC+TGG + tig0026362:63091-63110 Msa1428520:intron 60.0%
GCTGCAACGGCGTCGTTTGC+TGG + tig0026362:58129-58148 Msa1428520:CDS 65.0%
GGGGAGGGGAAGAGAAGGGA+AGG + tig0026362:58814-58833 Msa1428520:intron 65.0%
TTCAATGGCGGTGGGGGTGG+TGG - tig0026362:61116-61135 None:intergenic 65.0%
GGTGGCTTCAATGGCGGTGG+GGG - tig0026362:61122-61141 None:intergenic 65.0%
GCTGGTGGCTTCAATGGCGG+TGG - tig0026362:61125-61144 None:intergenic 65.0%
GCGGCTGGTGGCTTCAATGG+CGG - tig0026362:61128-61147 None:intergenic 65.0%
CCAGCGGCTGGTGGCTTCAA+TGG - tig0026362:61131-61150 None:intergenic 65.0%
CCATTGAAGCCACCAGCCGC+TGG + tig0026362:61128-61147 Msa1428520:intron 65.0%
GAGGTCCCTCAAAGCAGGGG+CGG + tig0026362:62116-62135 Msa1428520:intron 65.0%
CTAGCTCCGCCCCTGCTTTG+AGG - tig0026362:62125-62144 None:intergenic 65.0%
CTCAAAGCAGGGGCGGAGCT+AGG + tig0026362:62123-62142 Msa1428520:intron 65.0%
GCGGAGCTAGGACTGAGTGG+TGG + tig0026362:62135-62154 Msa1428520:intron 65.0%
GTGGATGATCCTGGGGGGAC+TGG - tig0026362:62792-62811 None:intergenic 65.0%
!!! GTCTTTTGGGGCAGGGGGAG+AGG - tig0026362:62821-62840 None:intergenic 65.0%
GGCTTCAATGGCGGTGGGGG+TGG - tig0026362:61119-61138 None:intergenic 70.0%
GGGGCGGAGCTAGGACTGAG+TGG + tig0026362:62132-62151 Msa1428520:intron 70.0%
GCAGGGGGAGAGGAGCTGTG+TGG - tig0026362:62811-62830 None:intergenic 70.0%
GGGGGGAAGGGGACACCAGC+CGG - tig0026362:59746-59765 None:intergenic 75.0%
CAACAGGGGCCAGTCCCCCC+AGG + tig0026362:62780-62799 Msa1428520:intron 75.0%
Chromosome Type Strat End Strand Name
tig0026362 gene 57957 63937 57957 ID=Msa1428520;Name=Msa1428520
tig0026362 mRNA 57957 63937 57957 ID=Msa1428520-mRNA-1;Parent=Msa1428520;Name=Msa1428520-mRNA-1;_AED=0.00;_eAED=0.00;_QI=127|1|1|1|0|1|2|294|66
tig0026362 exon 57957 58206 57957 ID=Msa1428520-mRNA-1:exon:5984;Parent=Msa1428520-mRNA-1
tig0026362 exon 63566 63937 63566 ID=Msa1428520-mRNA-1:exon:5985;Parent=Msa1428520-mRNA-1
tig0026362 five_prime_UTR 57957 58083 57957 ID=Msa1428520-mRNA-1:five_prime_utr;Parent=Msa1428520-mRNA-1
tig0026362 CDS 58084 58206 58084 ID=Msa1428520-mRNA-1:cds;Parent=Msa1428520-mRNA-1
tig0026362 CDS 63566 63643 63566 ID=Msa1428520-mRNA-1:cds;Parent=Msa1428520-mRNA-1
tig0026362 three_prime_UTR 63644 63937 63644 ID=Msa1428520-mRNA-1:three_prime_utr;Parent=Msa1428520-mRNA-1
Gene Sequence

>Msa1428520

ATGGGGTACGTGCTTCGAGTGAGATTAGCTTCGTTCTTCGCCGGTGCTGCAACGGCGTCGTTTGCTGGTCTCTACATCCTTCATCGTGATTACAAGCTTGCCCACCAATCCCATACTCAACAGGTGAATGGTCTCTACGAATCACTAGACAGTCGAATTTCTTCCCTGGAAAAACTGAAACAAACTGAAACTTCACAATAG
Protein sequence

>Msa1428520

MGYVLRVRLASFFAGAATASFAGLYILHRDYKLAHQSHTQQVNGLYESLDSRISSLEKLKQTETSQ*