AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0471960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0471960 MtrunA17_Chr3g0127601 100.000 66 0 0 1 66 1 66 1.51e-43 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0471960 AT5G53650.1 65.152 66 23 0 1 66 1 66 5.98e-27 93.2

Find 38 sgRNAs with CRISPR-Local

Find 533 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGTATCCGGATGTATTT+TGG 0.172027 3_3:+74361425 Msa0471960:three_prime_UTR
CAATCTTGAGAGAAAGAAAA+TGG 0.241800 3_3:+74355786 Msa0471960:exon
GCTGCAACGGCGTCGTTTGC+TGG 0.270820 3_3:+74355850 Msa0471960:CDS
TTTAGTTACTGCAAATGGTT+TGG 0.339295 3_3:+74361593 Msa0471960:three_prime_UTR
TCTCAAGATTGATTGATTGC+AGG 0.359997 3_3:-74355774 None:intergenic
TTCTATTTAGTTACTGCAAA+TGG 0.363096 3_3:+74361588 Msa0471960:three_prime_UTR
CTTCGGATCGGTTCTGTATC+CGG 0.372606 3_3:+74361414 Msa0471960:three_prime_UTR
TTTGGTGATTAATGAACATC+TGG 0.375107 3_3:+74361521 Msa0471960:three_prime_UTR
GGGAGAATACCTGTTGAGTA+TGG 0.376982 3_3:-74355915 None:intergenic
TTCTTCTTCTCACGATGCTT+CGG 0.396875 3_3:-74355734 None:intergenic
ACAAACTGAAACTTCACAAT+AGG 0.401412 3_3:+74361324 Msa0471960:CDS
AAACGACGTCGCTGCAAGAA+AGG 0.429481 3_3:+74355662 None:intergenic
AAGAAAGGGCCACGCGCGTT+CGG 0.451594 3_3:+74355677 Msa0471960:five_prime_UTR
AATCTTGAGAGAAAGAAAAT+GGG 0.454045 3_3:+74355787 Msa0471960:exon
AGAACCGATCCGAAGACTTA+TGG 0.456778 3_3:-74361406 None:intergenic
AAACGACGCCGTTGCAGCAC+CGG 0.470941 3_3:-74355845 None:intergenic
CCACCAATCCCATACTCAAC+AGG 0.477274 3_3:+74355906 Msa0471960:CDS
AACTTGTCACCATAAGTCTT+CGG 0.491211 3_3:+74361397 Msa0471960:three_prime_UTR
AACGACGTCGCTGCAAGAAA+GGG 0.504554 3_3:+74355663 None:intergenic
AGCATCGTGAGAAGAAGAAA+GGG 0.517209 3_3:+74355738 Msa0471960:five_prime_UTR
GTTCTTCGCCGGTGCTGCAA+CGG 0.522965 3_3:+74355837 Msa0471960:CDS
AAGCATCGTGAGAAGAAGAA+AGG 0.525203 3_3:+74355737 Msa0471960:five_prime_UTR
AGACTTATGGTGACAAGTTG+AGG 0.536592 3_3:-74361393 None:intergenic
AGACAGTCGAATTTCTTCCC+TGG 0.541530 3_3:+74361291 Msa0471960:CDS
CAAGCTTGTAATCACGATGA+AGG 0.577496 3_3:-74355882 None:intergenic
CCTGTTGAGTATGGGATTGG+TGG 0.582093 3_3:-74355906 None:intergenic
AGATTAGCTTCGTTCTTCGC+CGG 0.587795 3_3:+74355826 Msa0471960:CDS
ATACCTGTTGAGTATGGGAT+TGG 0.603433 3_3:-74355909 None:intergenic
ACTACAGTGCCGAACGCGCG+TGG 0.606854 3_3:-74355686 None:intergenic
TCATTAATCACCAAATGCAA+TGG 0.615594 3_3:-74361513 None:intergenic
TGATTAATGAACATCTGGGA+TGG 0.619153 3_3:+74361526 Msa0471960:three_prime_UTR
CTGTTGAGTATGGGATTGGT+GGG 0.621413 3_3:-74355905 None:intergenic
GGAGAATACCTGTTGAGTAT+GGG 0.625186 3_3:-74355914 None:intergenic
GTCACCATAAGTCTTCGGAT+CGG 0.633003 3_3:+74361402 Msa0471960:three_prime_UTR
GATTAATGAACATCTGGGAT+GGG 0.635717 3_3:+74361527 Msa0471960:three_prime_UTR
ATCTTGAGAGAAAGAAAATG+GGG 0.673965 3_3:+74355788 Msa0471960:exon
TTGGTGATTAATGAACATCT+GGG 0.693716 3_3:+74361522 Msa0471960:three_prime_UTR
GCATCGTGAGAAGAAGAAAG+GGG 0.711412 3_3:+74355739 Msa0471960:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAATTATATAGAAGTA+AGG - chr3_3:74356642-74356661 None:intergenic 10.0%
!!! TTTATTTTATTTCCTTAATT+TGG + chr3_3:74357099-74357118 Msa0471960:intron 10.0%
!! GTTCTTTATAAAATAATTTA+TGG + chr3_3:74358718-74358737 Msa0471960:intron 10.0%
!!! TTTTTTTTTCTTGAATTATA+TGG - chr3_3:74359867-74359886 None:intergenic 10.0%
!! TAATACAAAAAATTGAATAT+GGG - chr3_3:74360589-74360608 None:intergenic 10.0%
!! ATAATACAAAAAATTGAATA+TGG - chr3_3:74360590-74360609 None:intergenic 10.0%
!! ACAATTATTCAACTAAAAAA+AGG - chr3_3:74356078-74356097 None:intergenic 15.0%
!!! TTGTTGTATAATATTTTTTG+TGG - chr3_3:74357504-74357523 None:intergenic 15.0%
!!! TATGTTTTACAAACAATTTT+TGG + chr3_3:74357529-74357548 Msa0471960:intron 15.0%
!!! ATGTTTTACAAACAATTTTT+GGG + chr3_3:74357530-74357549 Msa0471960:intron 15.0%
!!! AAATCATTGAAAGAATTTTT+AGG + chr3_3:74359359-74359378 Msa0471960:intron 15.0%
!!! TTTTTTGAACAAATGTATTT+TGG + chr3_3:74361452-74361471 Msa0471960:three_prime_UTR 15.0%
!!! TGATTTAGCTTTTTGATTTT+TGG + chr3_3:74356015-74356034 Msa0471960:intron 20.0%
!!! TTTGATTTTTGGTTAGAAAT+AGG + chr3_3:74356026-74356045 Msa0471960:intron 20.0%
!!! ATTATATAGAAGTAAGGTTT+TGG - chr3_3:74356636-74356655 None:intergenic 20.0%
!!! ATGAATGATCTATCAAATTT+TGG - chr3_3:74356870-74356889 None:intergenic 20.0%
!! AAAGATAATGCTCAAATTAA+AGG - chr3_3:74356957-74356976 None:intergenic 20.0%
!!! TTTCTTTGGAACTTTAAATT+TGG + chr3_3:74357243-74357262 Msa0471960:intron 20.0%
!!! TTCTTTGGAACTTTAAATTT+GGG + chr3_3:74357244-74357263 Msa0471960:intron 20.0%
!!! AAAAGTTGAAAAAGCTTTAA+AGG + chr3_3:74357771-74357790 Msa0471960:intron 20.0%
!! GAGACTCAATTAAATAAATA+GGG + chr3_3:74357940-74357959 Msa0471960:intron 20.0%
!! AGACTCAATTAAATAAATAG+GGG + chr3_3:74357941-74357960 Msa0471960:intron 20.0%
!!! TGTATTATAACCTTGTTTAT+AGG + chr3_3:74358229-74358248 Msa0471960:intron 20.0%
!!! TTCAATACTCTTAATTTTAG+GGG - chr3_3:74358341-74358360 None:intergenic 20.0%
!!! CTTCAATACTCTTAATTTTA+GGG - chr3_3:74358342-74358361 None:intergenic 20.0%
!!! CTAAAATTAAGAGTATTGAA+GGG + chr3_3:74358341-74358360 Msa0471960:intron 20.0%
!! AATTTATGGTTCTTCATTTA+CGG + chr3_3:74358732-74358751 Msa0471960:intron 20.0%
!!! AAGACATTTGAAATTGAAAT+GGG + chr3_3:74359965-74359984 Msa0471960:intron 20.0%
!!! TAATTTTGGAGAATTAGTTA+GGG + chr3_3:74360817-74360836 Msa0471960:intron 20.0%
!! AGGATACTTAATGAATAAAT+AGG + chr3_3:74360850-74360869 Msa0471960:intron 20.0%
!! GGATACTTAATGAATAAATA+GGG + chr3_3:74360851-74360870 Msa0471960:intron 20.0%
!! GATACTTAATGAATAAATAG+GGG + chr3_3:74360852-74360871 Msa0471960:intron 20.0%
!! ATACTTAATGAATAAATAGG+GGG + chr3_3:74360853-74360872 Msa0471960:intron 20.0%
!!! AACATGAACATTTGTTAATT+TGG + chr3_3:74360891-74360910 Msa0471960:intron 20.0%
!! AAAAAAATCCAAAATACATC+CGG - chr3_3:74361436-74361455 None:intergenic 20.0%
! AATCTTGAGAGAAAGAAAAT+GGG + chr3_3:74355787-74355806 Msa0471960:exon 25.0%
! TTAACTAACATGAATCTTGT+GGG - chr3_3:74355938-74355957 None:intergenic 25.0%
! ATTAACTAACATGAATCTTG+TGG - chr3_3:74355939-74355958 None:intergenic 25.0%
!! TAGTTGAATAATTGTTTCTC+TGG + chr3_3:74356083-74356102 Msa0471960:intron 25.0%
!! AGTTGAATAATTGTTTCTCT+GGG + chr3_3:74356084-74356103 Msa0471960:intron 25.0%
!! TGTTTGTGTTAGTGTTTTAT+AGG + chr3_3:74356214-74356233 Msa0471960:intron 25.0%
!! GTTTGTGTTAGTGTTTTATA+GGG + chr3_3:74356215-74356234 Msa0471960:intron 25.0%
! CATATTCTGCATAATGTAAA+TGG - chr3_3:74356400-74356419 None:intergenic 25.0%
! ATAACATAGATTACTGCATT+GGG - chr3_3:74356457-74356476 None:intergenic 25.0%
! TATAACATAGATTACTGCAT+TGG - chr3_3:74356458-74356477 None:intergenic 25.0%
! ATCTATGTTATAAGTTTCCA+AGG + chr3_3:74356466-74356485 Msa0471960:intron 25.0%
! TTATAAGTTTCCAAGGAATT+GGG + chr3_3:74356473-74356492 Msa0471960:intron 25.0%
!!! AATTTTGGTTTTACTTGACA+AGG - chr3_3:74356855-74356874 None:intergenic 25.0%
!! TGCATATGACAATTATGTTT+TGG - chr3_3:74356913-74356932 None:intergenic 25.0%
! CAAAACAAGTCTTAAAGATA+AGG - chr3_3:74357045-74357064 None:intergenic 25.0%
! AAATAAATCCAGTAGATGAT+AGG - chr3_3:74357086-74357105 None:intergenic 25.0%
! TATACATTTATAGTCATGTG+TGG + chr3_3:74357331-74357350 Msa0471960:intron 25.0%
! ATACATTTATAGTCATGTGT+GGG + chr3_3:74357332-74357351 Msa0471960:intron 25.0%
!! GTTTTCCATTGTCAAATAAA+GGG + chr3_3:74357432-74357451 Msa0471960:intron 25.0%
! TTTAAAGGTAGTATTCTGTT+AGG + chr3_3:74357786-74357805 Msa0471960:intron 25.0%
! GGAGACTCAATTAAATAAAT+AGG + chr3_3:74357939-74357958 Msa0471960:intron 25.0%
! GACTCAATTAAATAAATAGG+GGG + chr3_3:74357942-74357961 Msa0471960:intron 25.0%
! AGGTTATAATACATACTTGT+GGG - chr3_3:74358222-74358241 None:intergenic 25.0%
! AAGGTTATAATACATACTTG+TGG - chr3_3:74358223-74358242 None:intergenic 25.0%
!! TCAATACTCTTAATTTTAGG+GGG - chr3_3:74358340-74358359 None:intergenic 25.0%
!! CCTTCAATACTCTTAATTTT+AGG - chr3_3:74358343-74358362 None:intergenic 25.0%
!!! CCTAAAATTAAGAGTATTGA+AGG + chr3_3:74358340-74358359 Msa0471960:intron 25.0%
! AAAATAGATACATGATTGCA+AGG + chr3_3:74358402-74358421 Msa0471960:intron 25.0%
! AGAAATTCCGATATTCAATT+AGG + chr3_3:74358480-74358499 Msa0471960:intron 25.0%
!!! TTGATTATCTTCTAGCTTAT+AGG + chr3_3:74358694-74358713 Msa0471960:intron 25.0%
! AAAAGTTCTTATACAAGCTT+TGG + chr3_3:74358755-74358774 Msa0471960:intron 25.0%
! TAAATAATGACACCAATTTG+GGG - chr3_3:74359595-74359614 None:intergenic 25.0%
! CTAAATAATGACACCAATTT+GGG - chr3_3:74359596-74359615 None:intergenic 25.0%
!! ATTATTTAGGTTCATGTACA+CGG + chr3_3:74359607-74359626 Msa0471960:intron 25.0%
! ATTGAGAGATATTTGATTGT+GGG - chr3_3:74359794-74359813 None:intergenic 25.0%
! ATAAAGAGTAGAGAAAGAAA+TGG + chr3_3:74359894-74359913 Msa0471960:intron 25.0%
! ACTTATTATCTTCAATTGCA+AGG - chr3_3:74359933-74359952 None:intergenic 25.0%
!! GAAGACATTTGAAATTGAAA+TGG + chr3_3:74359964-74359983 Msa0471960:intron 25.0%
!! AGACATTTGAAATTGAAATG+GGG + chr3_3:74359966-74359985 Msa0471960:intron 25.0%
!! ATTATACTTTAAGAGCAGTA+AGG + chr3_3:74360122-74360141 Msa0471960:intron 25.0%
!!! ATTTTTTGCTCAAGTCTTTT+GGG - chr3_3:74360536-74360555 None:intergenic 25.0%
!!! AATTTTTTGCTCAAGTCTTT+TGG - chr3_3:74360537-74360556 None:intergenic 25.0%
! TTGAGCAAAAAATTTCTCTA+AGG + chr3_3:74360543-74360562 Msa0471960:intron 25.0%
! ATTATATTTCAGCAAACACT+CGG + chr3_3:74360605-74360624 Msa0471960:intron 25.0%
!!! GTAATTTTGGAGAATTAGTT+AGG + chr3_3:74360816-74360835 Msa0471960:intron 25.0%
! TTCTATAATTTCCATTTGCA+TGG + chr3_3:74361024-74361043 Msa0471960:intron 25.0%
! TTCTATTTAGTTACTGCAAA+TGG + chr3_3:74361588-74361607 Msa0471960:three_prime_UTR 25.0%
CAATCTTGAGAGAAAGAAAA+TGG + chr3_3:74355786-74355805 Msa0471960:exon 30.0%
ATCTTGAGAGAAAGAAAATG+GGG + chr3_3:74355788-74355807 Msa0471960:exon 30.0%
AAGGATTATCATAATCGCAT+AGG - chr3_3:74356059-74356078 None:intergenic 30.0%
TGAAATGTAACTACATGCAT+AGG - chr3_3:74356131-74356150 None:intergenic 30.0%
ATAGTGTACATGGTTTATCT+TGG + chr3_3:74356261-74356280 Msa0471960:intron 30.0%
TAGTGTACATGGTTTATCTT+GGG + chr3_3:74356262-74356281 Msa0471960:intron 30.0%
! TACCAGGATTCTTGTTTATT+GGG + chr3_3:74356299-74356318 Msa0471960:intron 30.0%
TTGAGCTTAGATAATACTTG+AGG + chr3_3:74356353-74356372 Msa0471960:intron 30.0%
TGAGCTTAGATAATACTTGA+GGG + chr3_3:74356354-74356373 Msa0471960:intron 30.0%
GTTATAAGTTTCCAAGGAAT+TGG + chr3_3:74356472-74356491 Msa0471960:intron 30.0%
TATAAGTTTCCAAGGAATTG+GGG + chr3_3:74356474-74356493 Msa0471960:intron 30.0%
!!! TATAGAAGTAAGGTTTTGGA+GGG - chr3_3:74356632-74356651 None:intergenic 30.0%
!! ATATAGAAGTAAGGTTTTGG+AGG - chr3_3:74356633-74356652 None:intergenic 30.0%
! AACTGGATAGCTAACTTTTT+AGG - chr3_3:74356779-74356798 None:intergenic 30.0%
TAAAAAGTTAGCTATCCAGT+TGG + chr3_3:74356778-74356797 Msa0471960:intron 30.0%
GTATTTAATGATCTTCCAAC+TGG - chr3_3:74356796-74356815 None:intergenic 30.0%
!!! ATGTTTTGGTTGTATCAAGT+AGG - chr3_3:74356899-74356918 None:intergenic 30.0%
GCACTATTTGAAAATGGAAA+GGG - chr3_3:74357006-74357025 None:intergenic 30.0%
TGCACTATTTGAAAATGGAA+AGG - chr3_3:74357007-74357026 None:intergenic 30.0%
! TTCCATTTTCAAATAGTGCA+TGG + chr3_3:74357007-74357026 Msa0471960:intron 30.0%
! ATAGTCAAAGTTTTCGTGAA+AGG + chr3_3:74357218-74357237 Msa0471960:intron 30.0%
ATGGAAAACCACATTCATTA+GGG - chr3_3:74357421-74357440 None:intergenic 30.0%
AATGGAAAACCACATTCATT+AGG - chr3_3:74357422-74357441 None:intergenic 30.0%
! GGTTTTCCATTGTCAAATAA+AGG + chr3_3:74357431-74357450 Msa0471960:intron 30.0%
ATTGTCAAATAAAGGGAATC+CGG + chr3_3:74357439-74357458 Msa0471960:intron 30.0%
TGCGAATCATAAACAATTAG+GGG - chr3_3:74357481-74357500 None:intergenic 30.0%
GTGCGAATCATAAACAATTA+GGG - chr3_3:74357482-74357501 None:intergenic 30.0%
! TCTACATGGTAATGTGATTA+AGG - chr3_3:74357651-74357670 None:intergenic 30.0%
CATTACCATGTAGAAAATGA+TGG + chr3_3:74357657-74357676 Msa0471960:intron 30.0%
AGTATTCTGTTAGGATAGAA+AGG + chr3_3:74357795-74357814 Msa0471960:intron 30.0%
! GAGTTAGTTGAGATTAGTTA+GGG + chr3_3:74357902-74357921 Msa0471960:intron 30.0%
TTTATTGAATGCCTGAGAAT+AGG - chr3_3:74358064-74358083 None:intergenic 30.0%
CAACGAAGAGAAAAAGAAAA+TGG - chr3_3:74358111-74358130 None:intergenic 30.0%
TTCGTTGAGTTCTTAACAAA+TGG + chr3_3:74358124-74358143 Msa0471960:intron 30.0%
TCGTTGAGTTCTTAACAAAT+GGG + chr3_3:74358125-74358144 Msa0471960:intron 30.0%
ATGCTAGAATCCTATAAACA+AGG - chr3_3:74358242-74358261 None:intergenic 30.0%
AAAGATGCAAGAACTTGATT+TGG + chr3_3:74358295-74358314 Msa0471960:intron 30.0%
!! CAAGAACTTGATTTGGAAAA+AGG + chr3_3:74358302-74358321 Msa0471960:intron 30.0%
!! AACTTGATTTGGAAAAAGGT+AGG + chr3_3:74358306-74358325 Msa0471960:intron 30.0%
!! AATTAAGAGTATTGAAGGGA+TGG + chr3_3:74358345-74358364 Msa0471960:intron 30.0%
!! ATTAAGAGTATTGAAGGGAT+GGG + chr3_3:74358346-74358365 Msa0471960:intron 30.0%
! AGAAAGAGTATATTTGGTTC+CGG - chr3_3:74358586-74358605 None:intergenic 30.0%
GCTGAAATAACTTCATACTA+CGG + chr3_3:74358643-74358662 Msa0471960:intron 30.0%
TAAGATAGGCACACATATTA+GGG + chr3_3:74358909-74358928 Msa0471960:intron 30.0%
TTTCAGTTTCTAATAAGGAG+AGG + chr3_3:74359243-74359262 Msa0471960:intron 30.0%
TTTCTAATAAGGAGAGGAAA+AGG + chr3_3:74359249-74359268 Msa0471960:intron 30.0%
TACAAAACACTCTCTCAATA+AGG - chr3_3:74359283-74359302 None:intergenic 30.0%
GAACTCAAAAAATGTATTGG+AGG - chr3_3:74359410-74359429 None:intergenic 30.0%
GAGGAACTCAAAAAATGTAT+TGG - chr3_3:74359413-74359432 None:intergenic 30.0%
CCTAAATAATGACACCAATT+TGG - chr3_3:74359597-74359616 None:intergenic 30.0%
!! CCAAATTGGTGTCATTATTT+AGG + chr3_3:74359594-74359613 Msa0471960:intron 30.0%
GATTGAGAGATATTTGATTG+TGG - chr3_3:74359795-74359814 None:intergenic 30.0%
ATCAAATATCTCTCAATCAG+AGG + chr3_3:74359797-74359816 Msa0471960:intron 30.0%
TATCTTCAATTGCAAGGATT+AGG - chr3_3:74359927-74359946 None:intergenic 30.0%
! GACATTTGAAATTGAAATGG+GGG + chr3_3:74359967-74359986 Msa0471960:intron 30.0%
TAAAGAACACAACTAACTGA+AGG + chr3_3:74360012-74360031 Msa0471960:intron 30.0%
AACAATAACATGATCTTGTG+TGG + chr3_3:74360195-74360214 Msa0471960:intron 30.0%
CTATAAACTCACATACAAAG+TGG - chr3_3:74360319-74360338 None:intergenic 30.0%
CTTTGTATGTGAGTTTATAG+TGG + chr3_3:74360319-74360338 Msa0471960:intron 30.0%
! AGAGACCAAAACATTTTTGT+TGG - chr3_3:74360367-74360386 None:intergenic 30.0%
!!! TGTTTTTTGAACAACCAAAG+CGG - chr3_3:74360464-74360483 None:intergenic 30.0%
TTGGTTGTTCAAAAAACAAC+AGG + chr3_3:74360466-74360485 Msa0471960:intron 30.0%
TGGTTGTTCAAAAAACAACA+GGG + chr3_3:74360467-74360486 Msa0471960:intron 30.0%
!!! TTTTTTGCTCAAGTCTTTTG+GGG - chr3_3:74360535-74360554 None:intergenic 30.0%
TTATATTTCAGCAAACACTC+GGG + chr3_3:74360606-74360625 Msa0471960:intron 30.0%
! ATTGCCAAATTGATAGCTAT+TGG + chr3_3:74360639-74360658 Msa0471960:intron 30.0%
TGTTCCAATAGCTATCAATT+TGG - chr3_3:74360646-74360665 None:intergenic 30.0%
TTAGTTAGGGTAATTAGTTG+AGG + chr3_3:74360830-74360849 Msa0471960:intron 30.0%
GAAATACAATTCTCCTTCAA+AGG - chr3_3:74360954-74360973 None:intergenic 30.0%
AGAAACAAAAACGAACACAA+AGG - chr3_3:74361008-74361027 None:intergenic 30.0%
!! AGTTTGTTTCAGTTTTTCCA+GGG - chr3_3:74361311-74361330 None:intergenic 30.0%
ACAAACTGAAACTTCACAAT+AGG + chr3_3:74361324-74361343 Msa0471960:CDS 30.0%
TCATTAATCACCAAATGCAA+TGG - chr3_3:74361516-74361535 None:intergenic 30.0%
! TTTGGTGATTAATGAACATC+TGG + chr3_3:74361521-74361540 Msa0471960:three_prime_UTR 30.0%
! TTGGTGATTAATGAACATCT+GGG + chr3_3:74361522-74361541 Msa0471960:three_prime_UTR 30.0%
!!! TTGCATTCTATTTTTGAAGC+TGG + chr3_3:74361556-74361575 Msa0471960:three_prime_UTR 30.0%
!!! TGCATTCTATTTTTGAAGCT+GGG + chr3_3:74361557-74361576 Msa0471960:three_prime_UTR 30.0%
TTTAGTTACTGCAAATGGTT+TGG + chr3_3:74361593-74361612 Msa0471960:three_prime_UTR 30.0%
TCTCAAGATTGATTGATTGC+AGG - chr3_3:74355777-74355796 None:intergenic 35.0%
!! TAATTGTTTCTCTGGGATGT+CGG + chr3_3:74356091-74356110 Msa0471960:intron 35.0%
GTACTTGTCAATGTCATGTT+CGG + chr3_3:74356191-74356210 Msa0471960:intron 35.0%
CAATAAACAAGAATCCTGGT+AGG - chr3_3:74356300-74356319 None:intergenic 35.0%
! CTACCAGGATTCTTGTTTAT+TGG + chr3_3:74356298-74356317 Msa0471960:intron 35.0%
! ATTCTTGTTTATTGGGAGTG+AGG + chr3_3:74356306-74356325 Msa0471960:intron 35.0%
! TTCTTGTTTATTGGGAGTGA+GGG + chr3_3:74356307-74356326 Msa0471960:intron 35.0%
GAGCTTAGATAATACTTGAG+GGG + chr3_3:74356355-74356374 Msa0471960:intron 35.0%
CATTATGCAGAATATGTGAG+TGG + chr3_3:74356404-74356423 Msa0471960:intron 35.0%
GGCATGTATGAGTTATTTAG+AGG + chr3_3:74356425-74356444 Msa0471960:intron 35.0%
!!! AAGGCATTTTTTTGAGAGAG+TGG + chr3_3:74356549-74356568 Msa0471960:intron 35.0%
GACCATGCACTATTTGAAAA+TGG - chr3_3:74357012-74357031 None:intergenic 35.0%
TAAATCCAGTAGATGATAGG+AGG - chr3_3:74357083-74357102 None:intergenic 35.0%
!! GATTTTGTTTCTCACCTTCT+TGG + chr3_3:74357129-74357148 Msa0471960:intron 35.0%
TTCTCACCTTCTTGGATATA+CGG + chr3_3:74357137-74357156 Msa0471960:intron 35.0%
!! TTTCGTGAAAGGTGTTTCTT+TGG + chr3_3:74357229-74357248 Msa0471960:intron 35.0%
ACAACTGAAACGCTAACAAA+AGG - chr3_3:74357302-74357321 None:intergenic 35.0%
! GGATTCCCTTTATTTGACAA+TGG - chr3_3:74357440-74357459 None:intergenic 35.0%
GAATCATAAACAATTAGGGG+GGG - chr3_3:74357478-74357497 None:intergenic 35.0%
CGAATCATAAACAATTAGGG+GGG - chr3_3:74357479-74357498 None:intergenic 35.0%
GCGAATCATAAACAATTAGG+GGG - chr3_3:74357480-74357499 None:intergenic 35.0%
GGTGCGAATCATAAACAATT+AGG - chr3_3:74357483-74357502 None:intergenic 35.0%
TTTCTTTCTACTCTCTTGTG+TGG + chr3_3:74357587-74357606 Msa0471960:intron 35.0%
! TGTTGCCATCATTTTCTACA+TGG - chr3_3:74357665-74357684 None:intergenic 35.0%
AAAGGTAGAGTAGAATGAAG+AGG + chr3_3:74357813-74357832 Msa0471960:intron 35.0%
GAGAATCGAGTAGAATGAAA+AGG + chr3_3:74357880-74357899 Msa0471960:intron 35.0%
! GGAGTTAGTTGAGATTAGTT+AGG + chr3_3:74357901-74357920 Msa0471960:intron 35.0%
TAGTTAGGGTAGTAGTTAGT+TGG + chr3_3:74357916-74357935 Msa0471960:intron 35.0%
AGTTAGGGTAGTAGTTAGTT+GGG + chr3_3:74357917-74357936 Msa0471960:intron 35.0%
AATAGGGGGAAATAGTAGAA+AGG + chr3_3:74357956-74357975 Msa0471960:intron 35.0%
AGCAGTGGTTCAATTGTAAA+AGG + chr3_3:74358011-74358030 Msa0471960:intron 35.0%
GCAGTGGTTCAATTGTAAAA+GGG + chr3_3:74358012-74358031 Msa0471960:intron 35.0%
CAGTGGTTCAATTGTAAAAG+GGG + chr3_3:74358013-74358032 Msa0471960:intron 35.0%
! ATTGTAAAAGGGGAAAGCAT+TGG + chr3_3:74358023-74358042 Msa0471960:intron 35.0%
! GAAGTCTTTTTCCTATTCTC+AGG + chr3_3:74358050-74358069 Msa0471960:intron 35.0%
AAAATAGATCCACTAGGTCT+AGG - chr3_3:74358156-74358175 None:intergenic 35.0%
!! TAGACCTAGTGGATCTATTT+TGG + chr3_3:74358155-74358174 Msa0471960:intron 35.0%
!! AGACCTAGTGGATCTATTTT+GGG + chr3_3:74358156-74358175 Msa0471960:intron 35.0%
GGGAAGAAATGTAGAATTTG+AGG + chr3_3:74358177-74358196 Msa0471960:intron 35.0%
TTCTTCCTATTGTTGCAACA+AGG - chr3_3:74358464-74358483 None:intergenic 35.0%
CTACACGCCTAATTGAATAT+CGG - chr3_3:74358490-74358509 None:intergenic 35.0%
! TTTTCTCAGAACAGGATTCT+TGG - chr3_3:74358523-74358542 None:intergenic 35.0%
!!! CAATCTTGTTTTCTCAGAAC+AGG - chr3_3:74358531-74358550 None:intergenic 35.0%
GGAACCAAATATACTCTTTC+TGG + chr3_3:74358585-74358604 Msa0471960:intron 35.0%
! TGCACCAGAAAGAGTATATT+TGG - chr3_3:74358592-74358611 None:intergenic 35.0%
TTTCAGCACGTTCTCAAAAA+GGG - chr3_3:74358630-74358649 None:intergenic 35.0%
ATTTCAGCACGTTCTCAAAA+AGG - chr3_3:74358631-74358650 None:intergenic 35.0%
GCTAGAAGATAATCAAGACT+GGG - chr3_3:74358690-74358709 None:intergenic 35.0%
AGCTAGAAGATAATCAAGAC+TGG - chr3_3:74358691-74358710 None:intergenic 35.0%
GTAAGATAGGCACACATATT+AGG + chr3_3:74358908-74358927 Msa0471960:intron 35.0%
AACTGAATCTCAGAGTTACA+GGG - chr3_3:74359118-74359137 None:intergenic 35.0%
TAACTGAATCTCAGAGTTAC+AGG - chr3_3:74359119-74359138 None:intergenic 35.0%
!! TAGTTGCAGAAGTTTGTTAG+AGG - chr3_3:74359194-74359213 None:intergenic 35.0%
! AATGTATTGGAGGAGGATTT+TGG - chr3_3:74359400-74359419 None:intergenic 35.0%
CTCAAAAAATGTATTGGAGG+AGG - chr3_3:74359407-74359426 None:intergenic 35.0%
AAAGTGGATCTTATTCCCAA+TGG + chr3_3:74359567-74359586 Msa0471960:intron 35.0%
ATTGTAGTCCATTTGCCTAT+AGG - chr3_3:74359690-74359709 None:intergenic 35.0%
!! TAGGCAAATGGACTACAATT+AGG + chr3_3:74359691-74359710 Msa0471960:intron 35.0%
! ATGGACTACAATTAGGAAAC+AGG + chr3_3:74359698-74359717 Msa0471960:intron 35.0%
TACAATTAGGAAACAGGAGA+TGG + chr3_3:74359704-74359723 Msa0471960:intron 35.0%
!! TGCAATATTCAGCTTTAGGA+AGG - chr3_3:74359738-74359757 None:intergenic 35.0%
CCAATGCAATATTCAGCTTT+AGG - chr3_3:74359742-74359761 None:intergenic 35.0%
CCTAAAGCTGAATATTGCAT+TGG + chr3_3:74359739-74359758 Msa0471960:intron 35.0%
TGATTGTGGGATCTATGATT+GGG - chr3_3:74359781-74359800 None:intergenic 35.0%
TTGATTGTGGGATCTATGAT+TGG - chr3_3:74359782-74359801 None:intergenic 35.0%
AAGAGTAGAGAAAGAAATGG+AGG + chr3_3:74359897-74359916 Msa0471960:intron 35.0%
AAGAAGTTCGAAGTTGGAAA+GGG + chr3_3:74360035-74360054 Msa0471960:intron 35.0%
GAAGTTGGAAAGGGAAATTA+GGG + chr3_3:74360044-74360063 Msa0471960:intron 35.0%
AATAACATGATCTTGTGTGG+TGG + chr3_3:74360198-74360217 Msa0471960:intron 35.0%
GTGGCAAAACTTTATCTGTA+AGG + chr3_3:74360217-74360236 Msa0471960:intron 35.0%
ACTGTTAGGATGGATATCTT+CGG + chr3_3:74360264-74360283 Msa0471960:intron 35.0%
! GCAGACCAACAAAAATGTTT+TGG + chr3_3:74360359-74360378 Msa0471960:intron 35.0%
TTTAAGCCTTTATTCCACAG+TGG + chr3_3:74360423-74360442 Msa0471960:intron 35.0%
TTAAGCCTTTATTCCACAGT+GGG + chr3_3:74360424-74360443 Msa0471960:intron 35.0%
GGTTGTTCAAAAAACAACAG+GGG + chr3_3:74360468-74360487 Msa0471960:intron 35.0%
TTGATACATGCCTAATTCCA+AGG - chr3_3:74361086-74361105 None:intergenic 35.0%
AGGATTGAAGACATAGTTCA+CGG - chr3_3:74361119-74361138 None:intergenic 35.0%
ATCAAAGAGACAGTTGCTAA+TGG - chr3_3:74361154-74361173 None:intergenic 35.0%
! TGATCCTTCCTTTTCTTGAA+TGG + chr3_3:74361170-74361189 Msa0471960:intron 35.0%
GTTTGTTTGAAGAGTTTGTG+TGG + chr3_3:74361207-74361226 Msa0471960:intron 35.0%
! TGAACTTTCTTTTCTTCTGC+AGG + chr3_3:74361246-74361265 Msa0471960:intron 35.0%
!! CAGTTTGTTTCAGTTTTTCC+AGG - chr3_3:74361312-74361331 None:intergenic 35.0%
AACTTGTCACCATAAGTCTT+CGG + chr3_3:74361397-74361416 Msa0471960:three_prime_UTR 35.0%
! TTCTGTATCCGGATGTATTT+TGG + chr3_3:74361425-74361444 Msa0471960:three_prime_UTR 35.0%
! GTTTTTATCGCCATTGCATT+TGG + chr3_3:74361503-74361522 Msa0471960:three_prime_UTR 35.0%
TGATTAATGAACATCTGGGA+TGG + chr3_3:74361526-74361545 Msa0471960:three_prime_UTR 35.0%
! GATTAATGAACATCTGGGAT+GGG + chr3_3:74361527-74361546 Msa0471960:three_prime_UTR 35.0%
TTCTTCTTCTCACGATGCTT+CGG - chr3_3:74355737-74355756 None:intergenic 40.0%
! AAGCATCGTGAGAAGAAGAA+AGG + chr3_3:74355737-74355756 Msa0471960:five_prime_UTR 40.0%
AGCATCGTGAGAAGAAGAAA+GGG + chr3_3:74355738-74355757 Msa0471960:five_prime_UTR 40.0%
CAAGCTTGTAATCACGATGA+AGG - chr3_3:74355885-74355904 None:intergenic 40.0%
ATACCTGTTGAGTATGGGAT+TGG - chr3_3:74355912-74355931 None:intergenic 40.0%
GGAGAATACCTGTTGAGTAT+GGG - chr3_3:74355917-74355936 None:intergenic 40.0%
! GGTATGTATGAGTGAGTTGA+CGG + chr3_3:74356236-74356255 Msa0471960:intron 40.0%
TAAACAAGAATCCTGGTAGG+TGG - chr3_3:74356297-74356316 None:intergenic 40.0%
CTCCCAATAAACAAGAATCC+TGG - chr3_3:74356304-74356323 None:intergenic 40.0%
AACTCGCAAACAAAGCCATA+GGG - chr3_3:74356506-74356525 None:intergenic 40.0%
AAACTCGCAAACAAAGCCAT+AGG - chr3_3:74356507-74356526 None:intergenic 40.0%
!! TATGGCTTTGTTTGCGAGTT+TGG + chr3_3:74356506-74356525 Msa0471960:intron 40.0%
ACACAAAATCCCCTCGAAAT+GGG - chr3_3:74356670-74356689 None:intergenic 40.0%
AACACAAAATCCCCTCGAAA+TGG - chr3_3:74356671-74356690 None:intergenic 40.0%
TTATGAAGCCCCATTCAAGT+TGG + chr3_3:74356689-74356708 Msa0471960:intron 40.0%
! TATGAAGCCCCATTCAAGTT+GGG + chr3_3:74356690-74356709 Msa0471960:intron 40.0%
AAGGAGGAAGGGAAAATGAT+AGG - chr3_3:74356718-74356737 None:intergenic 40.0%
TTAGGCTCTGTTTACGAGTT+TGG - chr3_3:74356761-74356780 None:intergenic 40.0%
AATCACACATCGAGTGGTAT+GGG - chr3_3:74356826-74356845 None:intergenic 40.0%
AAATCACACATCGAGTGGTA+TGG - chr3_3:74356827-74356846 None:intergenic 40.0%
ATACCACTCGATGTGTGATT+TGG + chr3_3:74356826-74356845 Msa0471960:intron 40.0%
TACCACTCGATGTGTGATTT+GGG + chr3_3:74356827-74356846 Msa0471960:intron 40.0%
AATCTCCTCCTATCATCTAC+TGG + chr3_3:74357075-74357094 Msa0471960:intron 40.0%
AAATCGCAGGGTCCAAATTA+AGG - chr3_3:74357114-74357133 None:intergenic 40.0%
AGGTGAGAAACAAAATCGCA+GGG - chr3_3:74357126-74357145 None:intergenic 40.0%
AAGGTGAGAAACAAAATCGC+AGG - chr3_3:74357127-74357146 None:intergenic 40.0%
TGTCATCTCCCTAATGAATG+TGG + chr3_3:74357410-74357429 Msa0471960:intron 40.0%
ATAAACAATTAGGGGGGGAA+GGG - chr3_3:74357473-74357492 None:intergenic 40.0%
ACTCTCTTGTGTGGAATTCA+TGG + chr3_3:74357596-74357615 Msa0471960:intron 40.0%
TCATTCTACTCGATTCTCCT+CGG - chr3_3:74357878-74357897 None:intergenic 40.0%
GTTAGGGTAGTAGTTAGTTG+GGG + chr3_3:74357918-74357937 Msa0471960:intron 40.0%
GCATGAGAAAAACATAGCAG+TGG + chr3_3:74357996-74358015 Msa0471960:intron 40.0%
!! GACCTAGTGGATCTATTTTG+GGG + chr3_3:74358157-74358176 Msa0471960:intron 40.0%
TTCCCCAAAATAGATCCACT+AGG - chr3_3:74358162-74358181 None:intergenic 40.0%
ATGCTGCATCATCTTAAGCT+TGG - chr3_3:74358267-74358286 None:intergenic 40.0%
AGCTTAAGATGATGCAGCAT+CGG + chr3_3:74358267-74358286 Msa0471960:intron 40.0%
GGAGGAATCAAGCATACATT+GGG + chr3_3:74358367-74358386 Msa0471960:intron 40.0%
TACATGATTGCAAGGCGAAA+AGG + chr3_3:74358410-74358429 Msa0471960:intron 40.0%
AACAAGGCCATATCTGGAAA+CGG - chr3_3:74358448-74358467 None:intergenic 40.0%
!! TATGGCCTTGTTGCAACAAT+AGG + chr3_3:74358456-74358475 Msa0471960:intron 40.0%
AAACAACTGCTGTCGAGATT+AGG - chr3_3:74358559-74358578 None:intergenic 40.0%
CCATAAAACCTGGATCTCTA+AGG - chr3_3:74358796-74358815 None:intergenic 40.0%
! CCTTAGAGATCCAGGTTTTA+TGG + chr3_3:74358793-74358812 Msa0471960:intron 40.0%
GGTCTGTTTGAGAGTTTGAA+GGG + chr3_3:74358930-74358949 Msa0471960:intron 40.0%
TGTTTGAGAGTTTGAAGGGA+AGG + chr3_3:74358934-74358953 Msa0471960:intron 40.0%
GTTTGAGAGTTTGAAGGGAA+GGG + chr3_3:74358935-74358954 Msa0471960:intron 40.0%
TTTGAGAGTTTGAAGGGAAG+GGG + chr3_3:74358936-74358955 Msa0471960:intron 40.0%
ACTGAATCTCAGAGTTACAG+GGG - chr3_3:74359117-74359136 None:intergenic 40.0%
TGCAACTAACTTCTCCTTCA+AGG + chr3_3:74359206-74359225 Msa0471960:intron 40.0%
TCTCCTTCAAGGTTCATCAA+TGG + chr3_3:74359217-74359236 Msa0471960:intron 40.0%
GGCGGTTTCAGTTTCTAATA+AGG + chr3_3:74359238-74359257 Msa0471960:intron 40.0%
CTAATAAGGAGAGGAAAAGG+CGG + chr3_3:74359252-74359271 Msa0471960:intron 40.0%
TATGTTTGGGAGTTTAGGAG+GGG - chr3_3:74359473-74359492 None:intergenic 40.0%
CTATGTTTGGGAGTTTAGGA+GGG - chr3_3:74359474-74359493 None:intergenic 40.0%
AAGGCTATGTTTGGGAGTTT+AGG - chr3_3:74359478-74359497 None:intergenic 40.0%
ATGCCACTAAGGCTATGTTT+GGG - chr3_3:74359486-74359505 None:intergenic 40.0%
! AAACATAGCCTTAGTGGCAT+CGG + chr3_3:74359486-74359505 Msa0471960:intron 40.0%
CATTGCAAATCTGTCAACTG+TGG + chr3_3:74359637-74359656 Msa0471960:intron 40.0%
TTTGCCTATAGGTTTCAGCT+TGG - chr3_3:74359679-74359698 None:intergenic 40.0%
AGCTGAAACCTATAGGCAAA+TGG + chr3_3:74359679-74359698 Msa0471960:intron 40.0%
TGAAGGAAGAAGTTCGAAGT+TGG + chr3_3:74360029-74360048 Msa0471960:intron 40.0%
GAAGAAGTTCGAAGTTGGAA+AGG + chr3_3:74360034-74360053 Msa0471960:intron 40.0%
CGAAGTTGGAAAGGGAAATT+AGG + chr3_3:74360043-74360062 Msa0471960:intron 40.0%
! GGGAAATTAGGGCATTAAGT+CGG + chr3_3:74360055-74360074 Msa0471960:intron 40.0%
TAATACCGACACTGTTAGGA+TGG + chr3_3:74360254-74360273 Msa0471960:intron 40.0%
GATATCCATCCTAACAGTGT+CGG - chr3_3:74360262-74360281 None:intergenic 40.0%
ACATACAAAGTGGAAGATCC+CGG - chr3_3:74360309-74360328 None:intergenic 40.0%
TTGAACAACCAAAGCGGAAA+TGG - chr3_3:74360458-74360477 None:intergenic 40.0%
AAGGATTGCATGATTGCATC+AGG + chr3_3:74360562-74360581 Msa0471960:intron 40.0%
!! AGGGAGTTAAACTGGTTTGA+AGG + chr3_3:74360767-74360786 Msa0471960:intron 40.0%
!! GGGAGTTAAACTGGTTTGAA+GGG + chr3_3:74360768-74360787 Msa0471960:intron 40.0%
AGCAGTGATTCAGTTGCAAA+AGG + chr3_3:74360922-74360941 Msa0471960:intron 40.0%
GCAGTGATTCAGTTGCAAAA+GGG + chr3_3:74360923-74360942 Msa0471960:intron 40.0%
CAAAAGGGAGAAACCTTTGA+AGG + chr3_3:74360938-74360957 Msa0471960:intron 40.0%
GCTAATGGCGAAGAAAATGA+AGG - chr3_3:74361139-74361158 None:intergenic 40.0%
! TCCTTCCTTTTCTTGAATGG+AGG + chr3_3:74361173-74361192 Msa0471960:intron 40.0%
! CCTTCCTTTTCTTGAATGGA+GGG + chr3_3:74361174-74361193 Msa0471960:intron 40.0%
CATTCCCTCCATTCAAGAAA+AGG - chr3_3:74361181-74361200 None:intergenic 40.0%
! TCTTTTCTTCTGCAGGTGAA+TGG + chr3_3:74361253-74361272 Msa0471960:intron 40.0%
AGACTTATGGTGACAAGTTG+AGG - chr3_3:74361396-74361415 None:intergenic 40.0%
GCATCGTGAGAAGAAGAAAG+GGG + chr3_3:74355739-74355758 Msa0471960:five_prime_UTR 45.0%
!! AGATTAGCTTCGTTCTTCGC+CGG + chr3_3:74355826-74355845 Msa0471960:CDS 45.0%
! CTGTTGAGTATGGGATTGGT+GGG - chr3_3:74355908-74355927 None:intergenic 45.0%
GGGAGAATACCTGTTGAGTA+TGG - chr3_3:74355918-74355937 None:intergenic 45.0%
GTTGACGGAGATAGTGTACA+TGG + chr3_3:74356251-74356270 Msa0471960:intron 45.0%
GAATTGGGGAACATTCCCTA+TGG + chr3_3:74356488-74356507 Msa0471960:intron 45.0%
!! GCTTTGTTTGCGAGTTTGGA+GGG + chr3_3:74356510-74356529 Msa0471960:intron 45.0%
! CTTTGTTTGCGAGTTTGGAG+GGG + chr3_3:74356511-74356530 Msa0471960:intron 45.0%
!!! TTTTTAGCTCCCCCATTTCG+AGG + chr3_3:74356656-74356675 Msa0471960:intron 45.0%
!!! TTTTAGCTCCCCCATTTCGA+GGG + chr3_3:74356657-74356676 Msa0471960:intron 45.0%
ACAAAATCCCCTCGAAATGG+GGG - chr3_3:74356668-74356687 None:intergenic 45.0%
CACAAAATCCCCTCGAAATG+GGG - chr3_3:74356669-74356688 None:intergenic 45.0%
ATAGGCTCCCAACTTGAATG+GGG - chr3_3:74356700-74356719 None:intergenic 45.0%
GATAGGCTCCCAACTTGAAT+GGG - chr3_3:74356701-74356720 None:intergenic 45.0%
TGATAGGCTCCCAACTTGAA+TGG - chr3_3:74356702-74356721 None:intergenic 45.0%
TGGGTAAAAGGAAGGAGGAA+GGG - chr3_3:74356729-74356748 None:intergenic 45.0%
TTGGGTAAAAGGAAGGAGGA+AGG - chr3_3:74356730-74356749 None:intergenic 45.0%
AAGGTTGGGTAAAAGGAAGG+AGG - chr3_3:74356734-74356753 None:intergenic 45.0%
TGTTTACGAGTTTGGAGGGA+AGG - chr3_3:74356753-74356772 None:intergenic 45.0%
GCTCTGTTTACGAGTTTGGA+GGG - chr3_3:74356757-74356776 None:intergenic 45.0%
CACTTGCCGTATATCCAAGA+AGG - chr3_3:74357146-74357165 None:intergenic 45.0%
CTTCTTGGATATACGGCAAG+TGG + chr3_3:74357144-74357163 Msa0471960:intron 45.0%
TCAAATAAAGGGAATCCGGC+TGG + chr3_3:74357443-74357462 Msa0471960:intron 45.0%
TAAACAATTAGGGGGGGAAG+GGG - chr3_3:74357472-74357491 None:intergenic 45.0%
CATAAACAATTAGGGGGGGA+AGG - chr3_3:74357474-74357493 None:intergenic 45.0%
TTACGCAGCTAAGACAAGTG+AGG - chr3_3:74357695-74357714 None:intergenic 45.0%
!!! CCAATTTTGGTGGGCTAGTT+TGG - chr3_3:74357853-74357872 None:intergenic 45.0%
CCAAACTAGCCCACCAAAAT+TGG + chr3_3:74357850-74357869 Msa0471960:intron 45.0%
!!! ATTCTCCTCGGTGCCAATTT+TGG - chr3_3:74357866-74357885 None:intergenic 45.0%
!! GTAAAAGGGGAAAGCATTGG+AGG + chr3_3:74358026-74358045 Msa0471960:intron 45.0%
!! AAGAGTATTGAAGGGATGGG+AGG + chr3_3:74358349-74358368 Msa0471960:intron 45.0%
GGGAGGAATCAAGCATACAT+TGG + chr3_3:74358366-74358385 Msa0471960:intron 45.0%
TCAAGCATACATTGGGTGAG+CGG + chr3_3:74358374-74358393 Msa0471960:intron 45.0%
TGATTGCAAGGCGAAAAGGT+TGG + chr3_3:74358414-74358433 Msa0471960:intron 45.0%
GACATGACCGTTTCCAGATA+TGG + chr3_3:74358438-74358457 Msa0471960:intron 45.0%
TGTTGCAACAAGGCCATATC+TGG - chr3_3:74358454-74358473 None:intergenic 45.0%
CAGCTAGACTCCATAAAACC+TGG - chr3_3:74358806-74358825 None:intergenic 45.0%
CAACACAATATGTCAGCCAG+CGG - chr3_3:74358850-74358869 None:intergenic 45.0%
CTGGCTGACATATTGTGTTG+CGG + chr3_3:74358850-74358869 Msa0471960:intron 45.0%
CATATTGTGTTGCGGCTAAC+AGG + chr3_3:74358858-74358877 Msa0471960:intron 45.0%
GGGTCTGTTTGAGAGTTTGA+AGG + chr3_3:74358929-74358948 Msa0471960:intron 45.0%
TGAAGGGAAGGGGATGAATT+TGG + chr3_3:74358946-74358965 Msa0471960:intron 45.0%
GAAGGGAAGGGGATGAATTT+GGG + chr3_3:74358947-74358966 Msa0471960:intron 45.0%
AAGGGAAGGGGATGAATTTG+GGG + chr3_3:74358948-74358967 Msa0471960:intron 45.0%
CCTTCAAGGTTCATCAATGG+CGG + chr3_3:74359220-74359239 Msa0471960:intron 45.0%
GAGGAGGAAAGGAAAAATGG+AGG - chr3_3:74359432-74359451 None:intergenic 45.0%
GCTATGTTTGGGAGTTTAGG+AGG - chr3_3:74359475-74359494 None:intergenic 45.0%
! ACTCCCAAACATAGCCTTAG+TGG + chr3_3:74359480-74359499 Msa0471960:intron 45.0%
GATGCCACTAAGGCTATGTT+TGG - chr3_3:74359487-74359506 None:intergenic 45.0%
!! GTTCTGGAGAGGGAGATAAA+GGG + chr3_3:74359516-74359535 Msa0471960:intron 45.0%
GGGAATAAGATCCACTTTGC+AGG - chr3_3:74359565-74359584 None:intergenic 45.0%
CTTGCCAAGCTGAAACCTAT+AGG + chr3_3:74359672-74359691 Msa0471960:intron 45.0%
!!! TTTTCAGCACTGACACGTCT+CGG + chr3_3:74360157-74360176 Msa0471960:intron 45.0%
CATACAAAGTGGAAGATCCC+GGG - chr3_3:74360308-74360327 None:intergenic 45.0%
TATTTCAGCAAACACTCGGG+TGG + chr3_3:74360609-74360628 Msa0471960:intron 45.0%
ATTTCAGCAAACACTCGGGT+GGG + chr3_3:74360610-74360629 Msa0471960:intron 45.0%
AATGAGGTCCAACCTTGAAC+TGG - chr3_3:74360690-74360709 None:intergenic 45.0%
AGTTCAAGGTTGGACCTCAT+TGG + chr3_3:74360689-74360708 Msa0471960:intron 45.0%
GTTCAAGGTTGGACCTCATT+GGG + chr3_3:74360690-74360709 Msa0471960:intron 45.0%
TTCAAGGTTGGACCTCATTG+GGG + chr3_3:74360691-74360710 Msa0471960:intron 45.0%
! TACGGTCTAAAGTCTGGGTA+GGG - chr3_3:74360737-74360756 None:intergenic 45.0%
! TTACGGTCTAAAGTCTGGGT+AGG - chr3_3:74360738-74360757 None:intergenic 45.0%
! CGCTTTACGGTCTAAAGTCT+GGG - chr3_3:74360742-74360761 None:intergenic 45.0%
! TCGCTTTACGGTCTAAAGTC+TGG - chr3_3:74360743-74360762 None:intergenic 45.0%
GACTTTAGACCGTAAAGCGA+TGG + chr3_3:74360743-74360762 Msa0471960:intron 45.0%
TTAGACCGTAAAGCGATGGT+AGG + chr3_3:74360747-74360766 Msa0471960:intron 45.0%
TAGACCGTAAAGCGATGGTA+GGG + chr3_3:74360748-74360767 Msa0471960:intron 45.0%
AACTCCCTACCATCGCTTTA+CGG - chr3_3:74360755-74360774 None:intergenic 45.0%
!! ACTGGTTTGAAGGGATGAAG+AGG + chr3_3:74360777-74360796 Msa0471960:intron 45.0%
GTTTGAAGGGATGAAGAGGA+GGG + chr3_3:74360781-74360800 Msa0471960:intron 45.0%
TTTGAAGGGATGAAGAGGAG+GGG + chr3_3:74360782-74360801 Msa0471960:intron 45.0%
! GGCACTGTACTGGGTAATTT+TGG + chr3_3:74360803-74360822 Msa0471960:intron 45.0%
TTGGCATTGTGCCATGCAAA+TGG - chr3_3:74361038-74361057 None:intergenic 45.0%
CGACTACATAGAGCATGCTT+TGG - chr3_3:74361057-74361076 None:intergenic 45.0%
CCCTCCATTCAAGAAAAGGA+AGG - chr3_3:74361177-74361196 None:intergenic 45.0%
TTGAATGGAGGGAATGAGTG+AGG + chr3_3:74361185-74361204 Msa0471960:intron 45.0%
AGACAGTCGAATTTCTTCCC+TGG + chr3_3:74361291-74361310 Msa0471960:CDS 45.0%
GTCACCATAAGTCTTCGGAT+CGG + chr3_3:74361402-74361421 Msa0471960:three_prime_UTR 45.0%
AGAACCGATCCGAAGACTTA+TGG - chr3_3:74361409-74361428 None:intergenic 45.0%
CCTGTTGAGTATGGGATTGG+TGG - chr3_3:74355909-74355928 None:intergenic 50.0%
CCACCAATCCCATACTCAAC+AGG + chr3_3:74355906-74355925 Msa0471960:CDS 50.0%
! CTACATGCATAGGTGTCGTG+TGG - chr3_3:74356121-74356140 None:intergenic 50.0%
TGTTTATTGGGAGTGAGGGC+TGG + chr3_3:74356311-74356330 Msa0471960:intron 50.0%
GTTTATTGGGAGTGAGGGCT+GGG + chr3_3:74356312-74356331 Msa0471960:intron 50.0%
TTTATTGGGAGTGAGGGCTG+GGG + chr3_3:74356313-74356332 Msa0471960:intron 50.0%
GGGAATGTTCCCCAATTCCT+TGG - chr3_3:74356486-74356505 None:intergenic 50.0%
!! GGCTTTGTTTGCGAGTTTGG+AGG + chr3_3:74356509-74356528 Msa0471960:intron 50.0%
! TTTAGCTCCCCCATTTCGAG+GGG + chr3_3:74356658-74356677 Msa0471960:intron 50.0%
GGGAAGGTTGGGTAAAAGGA+AGG - chr3_3:74356737-74356756 None:intergenic 50.0%
TGGAGGGAAGGTTGGGTAAA+AGG - chr3_3:74356741-74356760 None:intergenic 50.0%
ACGAGTTTGGAGGGAAGGTT+GGG - chr3_3:74356748-74356767 None:intergenic 50.0%
TACGAGTTTGGAGGGAAGGT+TGG - chr3_3:74356749-74356768 None:intergenic 50.0%
GGCTCTGTTTACGAGTTTGG+AGG - chr3_3:74356758-74356777 None:intergenic 50.0%
ATCGAGTGGTATGGGATGGA+AGG - chr3_3:74356818-74356837 None:intergenic 50.0%
ACACATCGAGTGGTATGGGA+TGG - chr3_3:74356822-74356841 None:intergenic 50.0%
TGCCCAAATCACACATCGAG+TGG - chr3_3:74356832-74356851 None:intergenic 50.0%
GCAGCTAAGACAAGTGAGGA+AGG - chr3_3:74357691-74357710 None:intergenic 50.0%
!!! TCCTCGGTGCCAATTTTGGT+GGG - chr3_3:74357862-74357881 None:intergenic 50.0%
! CGACAGCAGTTGTTTGTTGC+CGG + chr3_3:74358564-74358583 Msa0471960:intron 50.0%
AGTAGCTGCCTTAGAGATCC+AGG + chr3_3:74358785-74358804 Msa0471960:intron 50.0%
TTGTGTTGCGGCTAACAGGT+TGG + chr3_3:74358862-74358881 Msa0471960:intron 50.0%
TGGCATTAGCAAACTGCCAC+AGG + chr3_3:74358882-74358901 Msa0471960:intron 50.0%
CTGCCACAGGTGTGTAAGAT+AGG + chr3_3:74358895-74358914 Msa0471960:intron 50.0%
GTGCCTATCTTACACACCTG+TGG - chr3_3:74358901-74358920 None:intergenic 50.0%
AGGGAAGGGGATGAATTTGG+GGG + chr3_3:74358949-74358968 Msa0471960:intron 50.0%
TGTTAGAGGAGAGAGAGAGC+AGG - chr3_3:74359180-74359199 None:intergenic 50.0%
CCGCCATTGATGAACCTTGA+AGG - chr3_3:74359223-74359242 None:intergenic 50.0%
GGGGAGGAGGAAAGGAAAAA+TGG - chr3_3:74359435-74359454 None:intergenic 50.0%
AGGGGAGGACTTTCGGAAAA+GGG - chr3_3:74359455-74359474 None:intergenic 50.0%
GTTTAGGAGGGGAGGACTTT+CGG - chr3_3:74359462-74359481 None:intergenic 50.0%
!! GGTTCTGGAGAGGGAGATAA+AGG + chr3_3:74359515-74359534 Msa0471960:intron 50.0%
TGGAGAGGGAGATAAAGGGA+GGG + chr3_3:74359520-74359539 Msa0471960:intron 50.0%
AGCAGTAGCATCCTGCAAAG+TGG + chr3_3:74359551-74359570 Msa0471960:intron 50.0%
TTCCCAATGGTGCCCCAAAT+TGG + chr3_3:74359580-74359599 Msa0471960:intron 50.0%
! CACCAATTTGGGGCACCATT+GGG - chr3_3:74359585-74359604 None:intergenic 50.0%
! ACACCAATTTGGGGCACCAT+TGG - chr3_3:74359586-74359605 None:intergenic 50.0%
ATGATTGGGAGCTGATGCTC+AGG - chr3_3:74359767-74359786 None:intergenic 50.0%
AATCAGAGGTCCCTCAAAGC+AGG + chr3_3:74359811-74359830 Msa0471960:intron 50.0%
ATCAGAGGTCCCTCAAAGCA+GGG + chr3_3:74359812-74359831 Msa0471960:intron 50.0%
TCTGTAAGGCCTAGCTGAAG+CGG + chr3_3:74360231-74360250 Msa0471960:intron 50.0%
TCGGTATTACCGCTTCAGCT+AGG - chr3_3:74360243-74360262 None:intergenic 50.0%
GCGGTAATACCGACACTGTT+AGG + chr3_3:74360250-74360269 Msa0471960:intron 50.0%
GATATCTTCGGTGATGTCCC+AGG + chr3_3:74360276-74360295 Msa0471960:intron 50.0%
AGCGACCCACTGTGGAATAA+AGG - chr3_3:74360432-74360451 None:intergenic 50.0%
!!! TGCTCAAGTCTTTTGGGGCA+GGG - chr3_3:74360530-74360549 None:intergenic 50.0%
!!! TTGCTCAAGTCTTTTGGGGC+AGG - chr3_3:74360531-74360550 None:intergenic 50.0%
TTTCAGCAAACACTCGGGTG+GGG + chr3_3:74360611-74360630 Msa0471960:intron 50.0%
GTCCAACCTTGAACTGGACT+GGG - chr3_3:74360684-74360703 None:intergenic 50.0%
GCGATGGTAGGGAGTTAAAC+TGG + chr3_3:74360759-74360778 Msa0471960:intron 50.0%
GGTTTGAAGGGATGAAGAGG+AGG + chr3_3:74360780-74360799 Msa0471960:intron 50.0%
CTATGTAGTCGCGACTTCCT+TGG + chr3_3:74361066-74361085 Msa0471960:intron 50.0%
GTCGCGACTTCCTTGGAATT+AGG + chr3_3:74361073-74361092 Msa0471960:intron 50.0%
! CTTCGGATCGGTTCTGTATC+CGG + chr3_3:74361414-74361433 Msa0471960:three_prime_UTR 50.0%
GGTTAGAGACTCCACCTACC+AGG + chr3_3:74356283-74356302 Msa0471960:intron 55.0%
TGTTTGCGAGTTTGGAGGGG+AGG + chr3_3:74356514-74356533 Msa0471960:intron 55.0%
GTTTGCGAGTTTGGAGGGGA+GGG + chr3_3:74356515-74356534 Msa0471960:intron 55.0%
TTTGCGAGTTTGGAGGGGAG+GGG + chr3_3:74356516-74356535 Msa0471960:intron 55.0%
!!! CTCCTCGGTGCCAATTTTGG+TGG - chr3_3:74357863-74357882 None:intergenic 55.0%
TGGGTCTGTCCTAGACCTAG+TGG + chr3_3:74358144-74358163 Msa0471960:intron 55.0%
ACAATATGTCAGCCAGCGGC+TGG - chr3_3:74358846-74358865 None:intergenic 55.0%
GGGAAGGGGATGAATTTGGG+GGG + chr3_3:74358950-74358969 Msa0471960:intron 55.0%
AAGGGGATGAATTTGGGGGG+AGG + chr3_3:74358953-74358972 Msa0471960:intron 55.0%
GATGAATTTGGGGGGAGGTG+AGG + chr3_3:74358958-74358977 Msa0471960:intron 55.0%
TCGGAAAAGGGGAGGAGGAA+AGG - chr3_3:74359443-74359462 None:intergenic 55.0%
GACTTTCGGAAAAGGGGAGG+AGG - chr3_3:74359448-74359467 None:intergenic 55.0%
GAGGACTTTCGGAAAAGGGG+AGG - chr3_3:74359451-74359470 None:intergenic 55.0%
GGGGAGGACTTTCGGAAAAG+GGG - chr3_3:74359454-74359473 None:intergenic 55.0%
GAGGGGAGGACTTTCGGAAA+AGG - chr3_3:74359456-74359475 None:intergenic 55.0%
GTTTGGGAGTTTAGGAGGGG+AGG - chr3_3:74359470-74359489 None:intergenic 55.0%
! CATAGCCTTAGTGGCATCGG+TGG + chr3_3:74359489-74359508 Msa0471960:intron 55.0%
CCAAACCACCGATGCCACTA+AGG - chr3_3:74359497-74359516 None:intergenic 55.0%
!! CCTTAGTGGCATCGGTGGTT+TGG + chr3_3:74359494-74359513 Msa0471960:intron 55.0%
!! TGGCATCGGTGGTTTGGTTC+TGG + chr3_3:74359500-74359519 Msa0471960:intron 55.0%
!! TCGGTGGTTTGGTTCTGGAG+AGG + chr3_3:74359505-74359524 Msa0471960:intron 55.0%
!! CGGTGGTTTGGTTCTGGAGA+GGG + chr3_3:74359506-74359525 Msa0471960:intron 55.0%
CTGGAGAGGGAGATAAAGGG+AGG + chr3_3:74359519-74359538 Msa0471960:intron 55.0%
GGAGAGGGAGATAAAGGGAG+GGG + chr3_3:74359521-74359540 Msa0471960:intron 55.0%
TCAGAGGTCCCTCAAAGCAG+GGG + chr3_3:74359813-74359832 Msa0471960:intron 55.0%
TCGCTGCTCCATTTCCGCTT+TGG + chr3_3:74360447-74360466 Msa0471960:intron 55.0%
AGCTGTGTGGATGATCCTGG+GGG - chr3_3:74360500-74360519 None:intergenic 55.0%
GAGCTGTGTGGATGATCCTG+GGG - chr3_3:74360501-74360520 None:intergenic 55.0%
GGAGCTGTGTGGATGATCCT+GGG - chr3_3:74360502-74360521 None:intergenic 55.0%
AGGAGCTGTGTGGATGATCC+TGG - chr3_3:74360503-74360522 None:intergenic 55.0%
!!! CTCAAGTCTTTTGGGGCAGG+GGG - chr3_3:74360528-74360547 None:intergenic 55.0%
!!! GCTCAAGTCTTTTGGGGCAG+GGG - chr3_3:74360529-74360548 None:intergenic 55.0%
CACCCAGTCCAGTTCAAGGT+TGG + chr3_3:74360679-74360698 Msa0471960:intron 55.0%
GGTCCAACCTTGAACTGGAC+TGG - chr3_3:74360685-74360704 None:intergenic 55.0%
!! GCTTTTGGTTGGCCCCAATG+AGG - chr3_3:74360706-74360725 None:intergenic 55.0%
! GGGCCAACCAAAAGCACAAC+TGG + chr3_3:74360711-74360730 Msa0471960:intron 55.0%
! GGGCCAGTTGTGCTTTTGGT+TGG - chr3_3:74360717-74360736 None:intergenic 55.0%
! GGTAGGGCCAGTTGTGCTTT+TGG - chr3_3:74360721-74360740 None:intergenic 55.0%
!! AAGAGGAGGGGCACTGTACT+GGG + chr3_3:74360794-74360813 Msa0471960:intron 55.0%
AAGAAAGGGCCACGCGCGTT+CGG + chr3_3:74355677-74355696 Msa0471960:five_prime_UTR 60.0%
!! GTTCTTCGCCGGTGCTGCAA+CGG + chr3_3:74355837-74355856 Msa0471960:CDS 60.0%
AAACGACGCCGTTGCAGCAC+CGG - chr3_3:74355848-74355867 None:intergenic 60.0%
TTGGAGGGGAGGGGAAGAGA+AGG + chr3_3:74356525-74356544 Msa0471960:intron 60.0%
TGGAGGGGAGGGGAAGAGAA+GGG + chr3_3:74356526-74356545 Msa0471960:intron 60.0%
GCCCACCAAAATTGGCACCG+AGG + chr3_3:74357858-74357877 Msa0471960:intron 60.0%
ATATGTCAGCCAGCGGCTGG+TGG - chr3_3:74358843-74358862 None:intergenic 60.0%
TAGCTCCGCCCCTGCTTTGA+GGG - chr3_3:74359824-74359843 None:intergenic 60.0%
CGGAGCTAGGACTGAGTGGT+GGG + chr3_3:74359836-74359855 Msa0471960:intron 60.0%
! AGCTAGGACTGAGTGGTGGG+AGG + chr3_3:74359839-74359858 Msa0471960:intron 60.0%
! GCTAGGACTGAGTGGTGGGA+GGG + chr3_3:74359840-74359859 Msa0471960:intron 60.0%
TGATGTCCCAGGTTCGAGCC+CGG + chr3_3:74360287-74360306 Msa0471960:intron 60.0%
AAGATCCCGGGCTCGAACCT+GGG - chr3_3:74360296-74360315 None:intergenic 60.0%
AATGGAGCAGCGACCCACTG+TGG - chr3_3:74360440-74360459 None:intergenic 60.0%
GCTGTGTGGATGATCCTGGG+GGG - chr3_3:74360499-74360518 None:intergenic 60.0%
!! GAAGAGGAGGGGCACTGTAC+TGG + chr3_3:74360793-74360812 Msa0471960:intron 60.0%
! ACTACAGTGCCGAACGCGCG+TGG - chr3_3:74355689-74355708 None:intergenic 65.0%
GCTGCAACGGCGTCGTTTGC+TGG + chr3_3:74355850-74355869 Msa0471960:CDS 65.0%
GGGGAGGGGAAGAGAAGGGA+AGG + chr3_3:74356530-74356549 Msa0471960:intron 65.0%
GCGGCTGGTGGCTTCAATGG+CGG - chr3_3:74358831-74358850 None:intergenic 65.0%
CCAGCGGCTGGTGGCTTCAA+TGG - chr3_3:74358834-74358853 None:intergenic 65.0%
CCATTGAAGCCACCAGCCGC+TGG + chr3_3:74358831-74358850 Msa0471960:intron 65.0%
GAGGTCCCTCAAAGCAGGGG+CGG + chr3_3:74359816-74359835 Msa0471960:intron 65.0%
CTAGCTCCGCCCCTGCTTTG+AGG - chr3_3:74359825-74359844 None:intergenic 65.0%
CTCAAAGCAGGGGCGGAGCT+AGG + chr3_3:74359823-74359842 Msa0471960:intron 65.0%
GCGGAGCTAGGACTGAGTGG+TGG + chr3_3:74359835-74359854 Msa0471960:intron 65.0%
GATGTCCCAGGTTCGAGCCC+GGG + chr3_3:74360288-74360307 Msa0471960:intron 65.0%
GAAGATCCCGGGCTCGAACC+TGG - chr3_3:74360297-74360316 None:intergenic 65.0%
GTGGATGATCCTGGGGGGAC+TGG - chr3_3:74360494-74360513 None:intergenic 65.0%
!!! GTCTTTTGGGGCAGGGGGAG+AGG - chr3_3:74360523-74360542 None:intergenic 65.0%
GGGGCGGAGCTAGGACTGAG+TGG + chr3_3:74359832-74359851 Msa0471960:intron 70.0%
GCAGGGGGAGAGGAGCTGTG+TGG - chr3_3:74360513-74360532 None:intergenic 70.0%
GGGGGGAAGGGGACACCAGC+CGG - chr3_3:74357461-74357480 None:intergenic 75.0%
CAACAGGGGCCAGTCCCCCC+AGG + chr3_3:74360482-74360501 Msa0471960:intron 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 74355677 74361639 74355677 ID=Msa0471960;Name=Msa0471960
chr3_3 mRNA 74355677 74361639 74355677 ID=Msa0471960-mRNA-1;Parent=Msa0471960;Name=Msa0471960-mRNA-1;_AED=0.00;_eAED=0.00;_QI=128|1|1|1|0|1|2|294|66
chr3_3 exon 74355677 74355927 74355677 ID=Msa0471960-mRNA-1:exon:18986;Parent=Msa0471960-mRNA-1
chr3_3 exon 74361268 74361639 74361268 ID=Msa0471960-mRNA-1:exon:18987;Parent=Msa0471960-mRNA-1
chr3_3 five_prime_UTR 74355677 74355804 74355677 ID=Msa0471960-mRNA-1:five_prime_utr;Parent=Msa0471960-mRNA-1
chr3_3 CDS 74355805 74355927 74355805 ID=Msa0471960-mRNA-1:cds;Parent=Msa0471960-mRNA-1
chr3_3 CDS 74361268 74361345 74361268 ID=Msa0471960-mRNA-1:cds;Parent=Msa0471960-mRNA-1
chr3_3 three_prime_UTR 74361346 74361639 74361346 ID=Msa0471960-mRNA-1:three_prime_utr;Parent=Msa0471960-mRNA-1
Gene Sequence

>Msa0471960

ATGGGGTACGTGCTTCGAGTGAGATTAGCTTCGTTCTTCGCCGGTGCTGCAACGGCGTCGTTTGCTGGTCTCTACATCCTTCATCGTGATTACAAGCTTGCCCACCAATCCCATACTCAACAGGTGAATGGTCTCTACGAATCACTAGACAGTCGAATTTCTTCCCTGGAAAAACTGAAACAAACTGAAACTTCACAATAG
Protein sequence

>Msa0471960

MGYVLRVRLASFFAGAATASFAGLYILHRDYKLAHQSHTQQVNGLYESLDSRISSLEKLKQTETSQ*