Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1081990 | KEH19397.1 | 100.000 | 32 | 0 | 0 | 75 | 106 | 24 | 55 | 7.40e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1081990 | A0A072TPU4 | 100.000 | 32 | 0 | 0 | 75 | 106 | 24 | 55 | 3.54e-13 | 68.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046740 | Msa1081990 | 0.803744 | 3.011406e-49 | -8.615850e-47 |
| Msa0064380 | Msa1081990 | 0.804684 | 1.919348e-49 | -8.615850e-47 |
| Msa0651050 | Msa1081990 | 0.802204 | 6.268744e-49 | -8.615850e-47 |
| Msa0784200 | Msa1081990 | 0.854814 | 9.578136e-62 | -8.615850e-47 |
| Msa0818310 | Msa1081990 | 0.858717 | 6.801561e-63 | -8.615850e-47 |
| Msa0149200 | Msa1081990 | 0.807366 | 5.235820e-50 | -8.615850e-47 |
| Msa0432210 | Msa1081990 | 0.801530 | 8.621581e-49 | -8.615850e-47 |
| Msa1078270 | Msa1081990 | 0.830247 | 3.270770e-55 | -8.615850e-47 |
| Msa1081990 | Msa1123500 | 0.804081 | 2.562995e-49 | -8.615850e-47 |
| Msa1081990 | Msa1126770 | 0.815374 | 9.551306e-52 | -8.615850e-47 |
| Msa1081990 | Msa1165940 | 0.809982 | 1.445849e-50 | -8.615850e-47 |
| Msa1081990 | Msa1169770 | 0.829561 | 4.804343e-55 | -8.615850e-47 |
| Msa1081990 | Msa1428520 | 0.814183 | 1.754031e-51 | -8.615850e-47 |
| Msa0300090 | Msa1081990 | 0.808880 | 2.492139e-50 | -8.615850e-47 |
| Msa0315170 | Msa1081990 | 0.816908 | 4.339632e-52 | -8.615850e-47 |
| Msa0521050 | Msa1081990 | 0.821066 | 4.920233e-53 | -8.615850e-47 |
| Msa0552810 | Msa1081990 | 0.812953 | 3.270136e-51 | -8.615850e-47 |
| Msa0566700 | Msa1081990 | 0.848555 | 5.687485e-60 | -8.615850e-47 |
| Msa0581070 | Msa1081990 | 0.803651 | 3.149154e-49 | -8.615850e-47 |
| Msa0858770 | Msa1081990 | 0.854143 | 1.497587e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1081990 | MtrunA17_Chr7g0269341 | 100.000 | 32 | 0 | 0 | 75 | 106 | 51 | 82 | 3.80e-16 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 29 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCGTCATCTTGACCTTTCC+TGG | 0.181566 | 7_2:+81918970 | None:intergenic |
| TGACCAAGATAAGGAGGCTT+GGG | 0.388636 | 7_2:-81919274 | Msa1081990:CDS |
| AAATCTGATTGTGCTAATCA+TGG | 0.425549 | 7_2:+81919358 | None:intergenic |
| GTTGTTCCTCCTTGTAAATC+CGG | 0.426154 | 7_2:+81919011 | None:intergenic |
| TGCAGTTCCAACGAAGAAAC+CGG | 0.439313 | 7_2:-81919030 | Msa1081990:intron |
| TGTAAATCCGGTTTCTTCGT+TGG | 0.454351 | 7_2:+81919023 | None:intergenic |
| GATTAGCACAATCAGATTTG+TGG | 0.457969 | 7_2:-81919354 | Msa1081990:CDS |
| TTTGGGTTATACATCAATCA+TGG | 0.464574 | 7_2:+81922018 | None:intergenic |
| GAGGAAAGAAAGAAACTGTT+GGG | 0.495321 | 7_2:-81919237 | Msa1081990:intron |
| GCAAACTAAGAGCTGCTGCC+AGG | 0.505591 | 7_2:-81918988 | Msa1081990:CDS |
| AATCATGGACTCGGAATGCA+TGG | 0.508189 | 7_2:+81922033 | None:intergenic |
| TTGACCAAGATAAGGAGGCT+TGG | 0.508824 | 7_2:-81919275 | Msa1081990:CDS |
| GCACAATCAGATTTGTGGCA+TGG | 0.516728 | 7_2:-81919349 | Msa1081990:CDS |
| CACAATCAGATTTGTGGCAT+GGG | 0.526483 | 7_2:-81919348 | Msa1081990:CDS |
| TGAGGAAAGAAAGAAACTGT+TGG | 0.528311 | 7_2:-81919238 | Msa1081990:CDS |
| ACGAAGAAACCGGATTTACA+AGG | 0.549458 | 7_2:-81919020 | Msa1081990:CDS |
| CCAGGAAAGGTCAAGATGAC+GGG | 0.551383 | 7_2:-81918970 | Msa1081990:CDS |
| GCCAGGAAAGGTCAAGATGA+CGG | 0.552182 | 7_2:-81918971 | Msa1081990:CDS |
| CTAAGAGCTGCTGCCAGGAA+AGG | 0.556365 | 7_2:-81918983 | Msa1081990:CDS |
| ACAGAAAGTTGACCAAGATA+AGG | 0.570309 | 7_2:-81919283 | Msa1081990:CDS |
| AATCTGATTGTGCTAATCAT+GGG | 0.577607 | 7_2:+81919359 | None:intergenic |
| TTATACATCAATCATGGACT+CGG | 0.583755 | 7_2:+81922024 | None:intergenic |
| CAATAGAAACTCTACTCGCA+AGG | 0.605313 | 7_2:+81919318 | None:intergenic |
| GACCAAGATAAGGAGGCTTG+GGG | 0.619599 | 7_2:-81919273 | Msa1081990:CDS |
| GAAAGTTGACCAAGATAAGG+AGG | 0.641368 | 7_2:-81919280 | Msa1081990:CDS |
| ATCATGGACTCGGAATGCAT+GGG | 0.649316 | 7_2:+81922034 | None:intergenic |
| ACCAAGATAAGGAGGCTTGG+GGG | 0.682827 | 7_2:-81919272 | Msa1081990:CDS |
| TAGTCTTCTTGACATGAACA+AGG | 0.684381 | 7_2:-81922160 | Msa1081990:intron |
| AAGAAACCGGATTTACAAGG+AGG | 0.717521 | 7_2:-81919017 | Msa1081990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTAAAATCATAAATTTTT+GGG | - | chr7_2:81919542-81919561 | Msa1081990:intron | 10.0% |
| !! | ATAGTTAAATTAAACATTTA+AGG | + | chr7_2:81920571-81920590 | None:intergenic | 10.0% |
| !! | TAAATTTCAAAATTCAAACA+TGG | - | chr7_2:81919199-81919218 | Msa1081990:intron | 15.0% |
| !!! | GCATTAAAATCATAAATTTT+TGG | - | chr7_2:81919541-81919560 | Msa1081990:intron | 15.0% |
| !!! | TTTTTTGTATATTGTTTAGA+TGG | - | chr7_2:81919701-81919720 | Msa1081990:intron | 15.0% |
| !! | TTAATTAACAGAAAATATGA+GGG | + | chr7_2:81920069-81920088 | None:intergenic | 15.0% |
| !! | TTTAATTAACAGAAAATATG+AGG | + | chr7_2:81920070-81920089 | None:intergenic | 15.0% |
| !! | GTTAATTAAATATAGAGTAA+AGG | - | chr7_2:81920080-81920099 | Msa1081990:intron | 15.0% |
| !!! | TTAGTTGATAACTTAATTAT+AGG | + | chr7_2:81921179-81921198 | None:intergenic | 15.0% |
| !!! | AGTTGTTTTATGTTTTTTTA+AGG | - | chr7_2:81921960-81921979 | Msa1081990:intron | 15.0% |
| !!! | GTTGTTTTATGTTTTTTTAA+GGG | - | chr7_2:81921961-81921980 | Msa1081990:intron | 15.0% |
| !!! | TACAATAATTTGTTAACATA+TGG | + | chr7_2:81922035-81922054 | None:intergenic | 15.0% |
| !! | TTTATGTAATTTATGTTAGC+TGG | - | chr7_2:81919009-81919028 | Msa1081990:CDS | 20.0% |
| !! | AAATGAAATTCAAGACATTT+GGG | + | chr7_2:81919137-81919156 | None:intergenic | 20.0% |
| !!! | GTTATTTTCCAATCATAAAA+GGG | + | chr7_2:81919295-81919314 | None:intergenic | 20.0% |
| !!! | ACTACATTCAATAATTTGTA+AGG | + | chr7_2:81919393-81919412 | None:intergenic | 20.0% |
| !! | AGGATGAAAAAAAATGATAT+GGG | + | chr7_2:81919978-81919997 | None:intergenic | 20.0% |
| !! | AAGGATGAAAAAAAATGATA+TGG | + | chr7_2:81919979-81919998 | None:intergenic | 20.0% |
| !! | TAATTAACAGAAAATATGAG+GGG | + | chr7_2:81920068-81920087 | None:intergenic | 20.0% |
| !! | TAAATTAACCACCATATTAT+TGG | + | chr7_2:81920713-81920732 | None:intergenic | 20.0% |
| !! | ATAATATGGTGGTTAATTTA+TGG | - | chr7_2:81920713-81920732 | Msa1081990:intron | 20.0% |
| !! | ACTTAATTATAGGAAGAAAA+AGG | + | chr7_2:81921169-81921188 | None:intergenic | 20.0% |
| !! | TGGATAAAATATTATAGGAA+GGG | + | chr7_2:81921457-81921476 | None:intergenic | 20.0% |
| !! | ATGGATAAAATATTATAGGA+AGG | + | chr7_2:81921458-81921477 | None:intergenic | 20.0% |
| !! | CTTCATGGATAAAATATTAT+AGG | + | chr7_2:81921462-81921481 | None:intergenic | 20.0% |
| !!! | CATAAAACAACTTTTTCTAT+CGG | + | chr7_2:81921952-81921971 | None:intergenic | 20.0% |
| !! | ATCAACATTAGTCATTTATA+TGG | + | chr7_2:81922074-81922093 | None:intergenic | 20.0% |
| ! | CAAATGAAATTCAAGACATT+TGG | + | chr7_2:81919138-81919157 | None:intergenic | 25.0% |
| !! | GGATTTGTTTGATAAATTAC+TGG | - | chr7_2:81919220-81919239 | Msa1081990:intron | 25.0% |
| !! | TTTGATAAATTACTGGTTGT+TGG | - | chr7_2:81919227-81919246 | Msa1081990:intron | 25.0% |
| !!! | GGTTATTTTCCAATCATAAA+AGG | + | chr7_2:81919296-81919315 | None:intergenic | 25.0% |
| ! | TTATGATTGGAAAATAACCT+TGG | - | chr7_2:81919297-81919316 | Msa1081990:CDS | 25.0% |
| ! | AGAACAATAAAAATACTGAG+AGG | + | chr7_2:81919439-81919458 | None:intergenic | 25.0% |
| !! | ACTAGATTTTTCTCATATCA+AGG | + | chr7_2:81919841-81919860 | None:intergenic | 25.0% |
| !! | AGAAAGGTATAATTGAAAAG+AGG | - | chr7_2:81919890-81919909 | Msa1081990:intron | 25.0% |
| !! | GAAAGGTATAATTGAAAAGA+GGG | - | chr7_2:81919891-81919910 | Msa1081990:intron | 25.0% |
| !!! | ATTTGTTTTCTCTCAATTTG+AGG | - | chr7_2:81919931-81919950 | Msa1081990:intron | 25.0% |
| !!! | TTTGTTTTCTCTCAATTTGA+GGG | - | chr7_2:81919932-81919951 | Msa1081990:intron | 25.0% |
| ! | GTTAAACTATAATTGCTACA+GGG | + | chr7_2:81920161-81920180 | None:intergenic | 25.0% |
| ! | AATAGACTGAAATTGAATGT+AGG | + | chr7_2:81920183-81920202 | None:intergenic | 25.0% |
| ! | GAAAAATTGATACATGATGA+TGG | - | chr7_2:81920329-81920348 | Msa1081990:intron | 25.0% |
| ! | TATGATTCTCCAATAACTTA+CGG | - | chr7_2:81920650-81920669 | Msa1081990:intron | 25.0% |
| !! | TGAGGTTATAATTTTTCATG+TGG | - | chr7_2:81920771-81920790 | Msa1081990:intron | 25.0% |
| ! | AGTTGACAAAAATTGAGTTA+TGG | - | chr7_2:81921020-81921039 | Msa1081990:intron | 25.0% |
| !! | TTTTTCTTGTTACGTTTATC+TGG | - | chr7_2:81921072-81921091 | Msa1081990:intron | 25.0% |
| !!! | TAAAGGTCTTTTAGCTTATT+TGG | - | chr7_2:81920825-81920844 | Msa1081990:intron | 25.0% |
| ! | TTATCAACTAATATTGCTCT+GGG | - | chr7_2:81921188-81921207 | Msa1081990:intron | 25.0% |
| ! | TTTATCCATGAAGTTTACTT+TGG | - | chr7_2:81921469-81921488 | Msa1081990:intron | 25.0% |
| !! | GTAACTTCTTTTTATGTTTG+TGG | - | chr7_2:81921592-81921611 | Msa1081990:intron | 25.0% |
| ! | ATTTAAATCAACCAGTCTTT+AGG | + | chr7_2:81921730-81921749 | None:intergenic | 25.0% |
| ! | TTTTACATTACCGATAGTAG+AGG | - | chr7_2:81919040-81919059 | Msa1081990:intron | 30.0% |
| ATTCTATGATCCTCTACTAT+CGG | + | chr7_2:81919053-81919072 | None:intergenic | 30.0% | |
| TTATACATCAATCATGGACT+CGG | + | chr7_2:81919114-81919133 | None:intergenic | 30.0% | |
| ! | TTTGGGTTATACATCAATCA+TGG | + | chr7_2:81919120-81919139 | None:intergenic | 30.0% |
| TACTTTGCGTTTAGCATTTA+TGG | - | chr7_2:81919169-81919188 | Msa1081990:intron | 30.0% | |
| AATAAAAATACTGAGAGGAG+GGG | + | chr7_2:81919434-81919453 | None:intergenic | 30.0% | |
| CAATAAAAATACTGAGAGGA+GGG | + | chr7_2:81919435-81919454 | None:intergenic | 30.0% | |
| ACAATAAAAATACTGAGAGG+AGG | + | chr7_2:81919436-81919455 | None:intergenic | 30.0% | |
| TAACCAACATGTAGAAAGAT+TGG | - | chr7_2:81919465-81919484 | Msa1081990:intron | 30.0% | |
| AATCCAATCTTTCTACATGT+TGG | + | chr7_2:81919471-81919490 | None:intergenic | 30.0% | |
| !!! | GAATTTTTTTACTACTGCCA+TGG | - | chr7_2:81919499-81919518 | Msa1081990:intron | 30.0% |
| TTTACATCGAACAAAACAAC+AGG | + | chr7_2:81919766-81919785 | None:intergenic | 30.0% | |
| CAGATGAGAAATAGTTAGAA+AGG | - | chr7_2:81919874-81919893 | Msa1081990:intron | 30.0% | |
| AAACAAATAGCTTGAGAAGA+AGG | + | chr7_2:81919919-81919938 | None:intergenic | 30.0% | |
| ! | TTGTTTTCTCTCAATTTGAG+GGG | - | chr7_2:81919933-81919952 | Msa1081990:intron | 30.0% |
| AAAAAATGATATGGGACTCA+CGG | + | chr7_2:81919970-81919989 | None:intergenic | 30.0% | |
| !!! | TTTTTTCTCCACAACACAAT+GGG | - | chr7_2:81920000-81920019 | Msa1081990:intron | 30.0% |
| GGTTAAACTATAATTGCTAC+AGG | + | chr7_2:81920162-81920181 | None:intergenic | 30.0% | |
| TCAACCAATGAAAACAATAC+AGG | - | chr7_2:81920205-81920224 | Msa1081990:intron | 30.0% | |
| CAACCAATGAAAACAATACA+GGG | - | chr7_2:81920206-81920225 | Msa1081990:intron | 30.0% | |
| ! | AATCCCTGTATTGTTTTCAT+TGG | + | chr7_2:81920212-81920231 | None:intergenic | 30.0% |
| !! | AAATTGATACATGATGATGG+TGG | - | chr7_2:81920332-81920351 | Msa1081990:intron | 30.0% |
| !! | TTAACATGTGTTACTTGGTT+AGG | + | chr7_2:81920410-81920429 | None:intergenic | 30.0% |
| AATCTACATCAACCTTGATT+TGG | - | chr7_2:81920485-81920504 | Msa1081990:intron | 30.0% | |
| AGTGAACTTGGAATTACAAT+GGG | - | chr7_2:81920544-81920563 | Msa1081990:intron | 30.0% | |
| !!! | GCATTTGGTTTTGTTTCATA+TGG | - | chr7_2:81920735-81920754 | Msa1081990:intron | 30.0% |
| ! | TTTTTCTCGTTACGTTTATC+TGG | - | chr7_2:81920801-81920820 | Msa1081990:intron | 30.0% |
| GCATGACAAAATAAGCTAAA+AGG | + | chr7_2:81920834-81920853 | None:intergenic | 30.0% | |
| ! | AATAGAGTAGACTAGCTATT+TGG | + | chr7_2:81920921-81920940 | None:intergenic | 30.0% |
| TAATGTGTGGTTGATTGAAA+AGG | + | chr7_2:81920982-81921001 | None:intergenic | 30.0% | |
| GCTATTATGTTTGTAATGTG+TGG | + | chr7_2:81920995-81921014 | None:intergenic | 30.0% | |
| TGTTACGTTTATCTGGTTAA+AGG | - | chr7_2:81921079-81921098 | Msa1081990:intron | 30.0% | |
| ATCTTACAATCAGGTACTTT+GGG | - | chr7_2:81921127-81921146 | Msa1081990:intron | 30.0% | |
| GTTATCAACTAATATTGCTC+TGG | - | chr7_2:81921187-81921206 | Msa1081990:intron | 30.0% | |
| ATATTATAGGAAGGGTTTCT+AGG | + | chr7_2:81921449-81921468 | None:intergenic | 30.0% | |
| TTGGTGAGAAAAGTTTATTC+TGG | - | chr7_2:81921488-81921507 | Msa1081990:intron | 30.0% | |
| ! | TTTCGAAGGAATTTGAAACA+AGG | + | chr7_2:81921647-81921666 | None:intergenic | 30.0% |
| ! | TGCTGTAATATAGTTTTCGA+AGG | + | chr7_2:81921661-81921680 | None:intergenic | 30.0% |
| AATCTGATTGTGCTAATCAT+GGG | + | chr7_2:81921779-81921798 | None:intergenic | 30.0% | |
| AAATCTGATTGTGCTAATCA+TGG | + | chr7_2:81921780-81921799 | None:intergenic | 30.0% | |
| TTGTTAACATATGGAACACT+GGG | + | chr7_2:81922026-81922045 | None:intergenic | 30.0% | |
| TTTGTTAACATATGGAACAC+TGG | + | chr7_2:81922027-81922046 | None:intergenic | 30.0% | |
| ATGGAAGCTCATAAAAACGA+CGG | - | chr7_2:81918949-81918968 | Msa1081990:CDS | 35.0% | |
| TAGTCTTCTTGACATGAACA+AGG | - | chr7_2:81918975-81918994 | Msa1081990:CDS | 35.0% | |
| ! | AAACCTGATTGTCTTTTTCC+AGG | - | chr7_2:81919076-81919095 | Msa1081990:intron | 35.0% |
| ! | TGTGTTCTCCCTTTTATGAT+TGG | - | chr7_2:81919284-81919303 | Msa1081990:CDS | 35.0% |
| TGATTGGAAAATAACCTTGG+CGG | - | chr7_2:81919300-81919319 | Msa1081990:CDS | 35.0% | |
| TAACTGAGGAGGAATTAAGA+TGG | - | chr7_2:81919326-81919345 | Msa1081990:CDS | 35.0% | |
| ATAAAAATACTGAGAGGAGG+GGG | + | chr7_2:81919433-81919452 | None:intergenic | 35.0% | |
| ! | CTTTCTACATGTTGGTTAAG+AGG | + | chr7_2:81919463-81919482 | None:intergenic | 35.0% |
| ! | CTATTTCTCATCTGTGATAC+AGG | + | chr7_2:81919868-81919887 | None:intergenic | 35.0% |
| TGTGTTGTGGAGAAAAAACA+AGG | + | chr7_2:81919998-81920017 | None:intergenic | 35.0% | |
| !!! | GTTTTTTCTCCACAACACAA+TGG | - | chr7_2:81919999-81920018 | Msa1081990:intron | 35.0% |
| ! | AATTTTCTCCCATTGTGTTG+TGG | + | chr7_2:81920011-81920030 | None:intergenic | 35.0% |
| ! | TAGGCACTTGTTAGTAAACA+GGG | - | chr7_2:81920243-81920262 | Msa1081990:intron | 35.0% |
| ! | GTCTGTTAACATGTGTTACT+TGG | + | chr7_2:81920415-81920434 | None:intergenic | 35.0% |
| CAACAGAATTACAGTGAACT+TGG | - | chr7_2:81920532-81920551 | Msa1081990:intron | 35.0% | |
| CAGTGAACTTGGAATTACAA+TGG | - | chr7_2:81920543-81920562 | Msa1081990:intron | 35.0% | |
| TTTAAGGATGTAAAGTCCTG+TGG | - | chr7_2:81920684-81920703 | Msa1081990:intron | 35.0% | |
| GGTGGTTAATTTATGGCATT+TGG | - | chr7_2:81920720-81920739 | Msa1081990:intron | 35.0% | |
| CGTTACGTTTATCTGGTTAA+AGG | - | chr7_2:81920808-81920827 | Msa1081990:intron | 35.0% | |
| !!! | TGTCATGCTGATTTTTCATG+TGG | - | chr7_2:81920884-81920903 | Msa1081990:intron | 35.0% |
| !!! | GTCATGCTGATTTTTCATGT+GGG | - | chr7_2:81920885-81920904 | Msa1081990:intron | 35.0% |
| !!! | TCATGCTGATTTTTCATGTG+GGG | - | chr7_2:81920886-81920905 | Msa1081990:intron | 35.0% |
| CTCATATTTCAGCAGATGTT+TGG | + | chr7_2:81920948-81920967 | None:intergenic | 35.0% | |
| GGAATATGACAACAGTCATA+TGG | - | chr7_2:81921041-81921060 | Msa1081990:intron | 35.0% | |
| GATCTTACAATCAGGTACTT+TGG | - | chr7_2:81921126-81921145 | Msa1081990:intron | 35.0% | |
| ! | AGGTACTTTGGGTACATTTT+AGG | - | chr7_2:81921138-81921157 | Msa1081990:intron | 35.0% |
| AAGCATTCTTTCCTACTACA+TGG | + | chr7_2:81921306-81921325 | None:intergenic | 35.0% | |
| ! | GTAGTAGGAAAGAATGCTTT+TGG | - | chr7_2:81921307-81921326 | Msa1081990:intron | 35.0% |
| ! | TAGGAAAGAATGCTTTTGGT+AGG | - | chr7_2:81921311-81921330 | Msa1081990:intron | 35.0% |
| ! | AGGAAAGAATGCTTTTGGTA+GGG | - | chr7_2:81921312-81921331 | Msa1081990:intron | 35.0% |
| GGGGAAACTAAAACATATGT+GGG | - | chr7_2:81921368-81921387 | Msa1081990:intron | 35.0% | |
| !! | TGGGAAGTATTGAAAATGAC+TGG | - | chr7_2:81921387-81921406 | Msa1081990:intron | 35.0% |
| CTTTGTTGCATAAAGAGCTT+TGG | - | chr7_2:81921419-81921438 | Msa1081990:intron | 35.0% | |
| TCTCACCAAAGTAAACTTCA+TGG | + | chr7_2:81921477-81921496 | None:intergenic | 35.0% | |
| TTATTCTGGTACTCAAGTTC+AGG | - | chr7_2:81921502-81921521 | Msa1081990:intron | 35.0% | |
| !! | GACATTCTCTACTGCTTTTA+AGG | + | chr7_2:81921528-81921547 | None:intergenic | 35.0% |
| !!! | ACCCATTGTGAATTAGCTTT+TGG | - | chr7_2:81921563-81921582 | Msa1081990:intron | 35.0% |
| GCCAAAAGCTAATTCACAAT+GGG | + | chr7_2:81921567-81921586 | None:intergenic | 35.0% | |
| TGCCAAAAGCTAATTCACAA+TGG | + | chr7_2:81921568-81921587 | None:intergenic | 35.0% | |
| !!! | GTGAATTAGCTTTTGGCAAA+TGG | - | chr7_2:81921570-81921589 | Msa1081990:intron | 35.0% |
| !! | TAGTGCTTTTTATGCACCTT+GGG | - | chr7_2:81921682-81921701 | Msa1081990:intron | 35.0% |
| GATTAGCACAATCAGATTTG+TGG | - | chr7_2:81921781-81921800 | Msa1081990:intron | 35.0% | |
| ACAGAAAGTTGACCAAGATA+AGG | - | chr7_2:81921852-81921871 | Msa1081990:intron | 35.0% | |
| TGAGGAAAGAAAGAAACTGT+TGG | - | chr7_2:81921897-81921916 | Msa1081990:intron | 35.0% | |
| GAGGAAAGAAAGAAACTGTT+GGG | - | chr7_2:81921898-81921917 | Msa1081990:intron | 35.0% | |
| GAACCTGGAAAAAGACAATC+AGG | + | chr7_2:81919082-81919101 | None:intergenic | 40.0% | |
| ! | ACTACTGCCATGGTGTTTTA+AGG | - | chr7_2:81919509-81919528 | Msa1081990:intron | 40.0% |
| !! | CTACTGCCATGGTGTTTTAA+GGG | - | chr7_2:81919510-81919529 | Msa1081990:intron | 40.0% |
| CCATATCCCTTAAAACACCA+TGG | + | chr7_2:81919519-81919538 | None:intergenic | 40.0% | |
| !!! | CCATGGTGTTTTAAGGGATA+TGG | - | chr7_2:81919516-81919535 | Msa1081990:intron | 40.0% |
| ! | TTTTCTCTCAATTTGAGGGG+AGG | - | chr7_2:81919936-81919955 | Msa1081990:intron | 40.0% |
| ! | CTAGGCACTTGTTAGTAAAC+AGG | - | chr7_2:81920242-81920261 | Msa1081990:intron | 40.0% |
| ! | AGGCACTTGTTAGTAAACAG+GGG | - | chr7_2:81920244-81920263 | Msa1081990:intron | 40.0% |
| TTGTTAGTAAACAGGGGATG+AGG | - | chr7_2:81920250-81920269 | Msa1081990:intron | 40.0% | |
| ACAGACTTAACATCCTGTAG+TGG | - | chr7_2:81920429-81920448 | Msa1081990:intron | 40.0% | |
| CAGACTTAACATCCTGTAGT+GGG | - | chr7_2:81920430-81920449 | Msa1081990:intron | 40.0% | |
| GTGTCATGACCGTAAGTTAT+TGG | + | chr7_2:81920662-81920681 | None:intergenic | 40.0% | |
| TACGGTCATGACACAGTTTA+AGG | - | chr7_2:81920668-81920687 | Msa1081990:intron | 40.0% | |
| TATGGCGCAGTTTGATTATG+AGG | - | chr7_2:81920753-81920772 | Msa1081990:intron | 40.0% | |
| GTCATGCTGATCTTACAATC+AGG | - | chr7_2:81921118-81921137 | Msa1081990:intron | 40.0% | |
| TACATGGCTATTGAGGTGAA+AGG | + | chr7_2:81921290-81921309 | None:intergenic | 40.0% | |
| TTCCTACTACATGGCTATTG+AGG | + | chr7_2:81921297-81921316 | None:intergenic | 40.0% | |
| ! | GGAAAGAATGCTTTTGGTAG+GGG | - | chr7_2:81921313-81921332 | Msa1081990:intron | 40.0% |
| GTGAAACTTACCTGCTTGTT+GGG | - | chr7_2:81921347-81921366 | Msa1081990:intron | 40.0% | |
| ! | TGAAACTTACCTGCTTGTTG+GGG | - | chr7_2:81921348-81921367 | Msa1081990:intron | 40.0% |
| GGGGGAAACTAAAACATATG+TGG | - | chr7_2:81921367-81921386 | Msa1081990:intron | 40.0% | |
| !! | CTAGTGCTTTTTATGCACCT+TGG | - | chr7_2:81921681-81921700 | Msa1081990:intron | 40.0% |
| !! | AGTGCTTTTTATGCACCTTG+GGG | - | chr7_2:81921683-81921702 | Msa1081990:intron | 40.0% |
| GCAAAACAAGACCTAAAGAC+TGG | - | chr7_2:81921716-81921735 | Msa1081990:intron | 40.0% | |
| CACAATCAGATTTGTGGCAT+GGG | - | chr7_2:81921787-81921806 | Msa1081990:intron | 40.0% | |
| CAATAGAAACTCTACTCGCA+AGG | + | chr7_2:81921820-81921839 | None:intergenic | 40.0% | |
| GAAAGTTGACCAAGATAAGG+AGG | - | chr7_2:81921855-81921874 | Msa1081990:intron | 40.0% | |
| TGTAAATCCGGTTTCTTCGT+TGG | + | chr7_2:81922115-81922134 | None:intergenic | 40.0% | |
| ACGAAGAAACCGGATTTACA+AGG | - | chr7_2:81922115-81922134 | Msa1081990:intron | 40.0% | |
| AAGAAACCGGATTTACAAGG+AGG | - | chr7_2:81922118-81922137 | Msa1081990:intron | 40.0% | |
| GTTGTTCCTCCTTGTAAATC+CGG | + | chr7_2:81922127-81922146 | None:intergenic | 40.0% | |
| GAAGCTCATAAAAACGACGG+TGG | - | chr7_2:81918952-81918971 | Msa1081990:CDS | 45.0% | |
| ATCATGGACTCGGAATGCAT+GGG | + | chr7_2:81919104-81919123 | None:intergenic | 45.0% | |
| AATCATGGACTCGGAATGCA+TGG | + | chr7_2:81919105-81919124 | None:intergenic | 45.0% | |
| TTAGTAAACAGGGGATGAGG+TGG | - | chr7_2:81920253-81920272 | Msa1081990:intron | 45.0% | |
| TACTTGGTTAGGCAGTTGGT+TGG | + | chr7_2:81920399-81920418 | None:intergenic | 45.0% | |
| !! | GTGTTACTTGGTTAGGCAGT+TGG | + | chr7_2:81920403-81920422 | None:intergenic | 45.0% |
| AGAAATGAGAGTCCCACTAC+AGG | + | chr7_2:81920445-81920464 | None:intergenic | 45.0% | |
| ! | CGAGAGAGAGCATGATTGAA+TGG | - | chr7_2:81920508-81920527 | Msa1081990:intron | 45.0% |
| TCCTGTGGCTGCCAATAATA+TGG | - | chr7_2:81920699-81920718 | Msa1081990:intron | 45.0% | |
| ACCATATTATTGGCAGCCAC+AGG | + | chr7_2:81920703-81920722 | None:intergenic | 45.0% | |
| TGTGGCTGCCAATAATATGG+TGG | - | chr7_2:81920702-81920721 | Msa1081990:intron | 45.0% | |
| CACCTCAATAGCCATGTAGT+AGG | - | chr7_2:81921292-81921311 | Msa1081990:intron | 45.0% | |
| ! | CTTTTGGTAGGGGCAAGTAA+GGG | - | chr7_2:81921323-81921342 | Msa1081990:intron | 45.0% |
| ! | TTTTGGTAGGGGCAAGTAAG+GGG | - | chr7_2:81921324-81921343 | Msa1081990:intron | 45.0% |
| GGTGAAACTTACCTGCTTGT+TGG | - | chr7_2:81921346-81921365 | Msa1081990:intron | 45.0% | |
| ! | GAAACTTACCTGCTTGTTGG+GGG | - | chr7_2:81921349-81921368 | Msa1081990:intron | 45.0% |
| ! | TTTAGTTTCCCCCAACAAGC+AGG | + | chr7_2:81921360-81921379 | None:intergenic | 45.0% |
| !! | GTGCTTTTTATGCACCTTGG+GGG | - | chr7_2:81921684-81921703 | Msa1081990:intron | 45.0% |
| TTTATGCACCTTGGGGGAAA+AGG | - | chr7_2:81921690-81921709 | Msa1081990:intron | 45.0% | |
| GCACAATCAGATTTGTGGCA+TGG | - | chr7_2:81921786-81921805 | Msa1081990:intron | 45.0% | |
| TTGACCAAGATAAGGAGGCT+TGG | - | chr7_2:81921860-81921879 | Msa1081990:intron | 45.0% | |
| TGACCAAGATAAGGAGGCTT+GGG | - | chr7_2:81921861-81921880 | Msa1081990:intron | 45.0% | |
| TGCAGTTCCAACGAAGAAAC+CGG | - | chr7_2:81922105-81922124 | Msa1081990:intron | 45.0% | |
| !!! | TTTAATTTTTTTTACTTTTT+CGG | - | chr7_2:81919356-81919375 | Msa1081990:CDS | 5.0% |
| ! | AACCTTGGCGGACATAACTG+AGG | - | chr7_2:81919312-81919331 | Msa1081990:CDS | 50.0% |
| GGAGGGGGAGATTAATAGAG+AGG | + | chr7_2:81919418-81919437 | None:intergenic | 50.0% | |
| ATATGAGGGGAGATGCTGAG+AGG | + | chr7_2:81920055-81920074 | None:intergenic | 50.0% | |
| ! | CAGGGATTGTGCTGATGTCT+AGG | - | chr7_2:81920224-81920243 | Msa1081990:intron | 50.0% |
| AACAAGCAAGCTCGAGAGCT+TGG | - | chr7_2:81920283-81920302 | Msa1081990:intron | 50.0% | |
| TGCTCTCTCTCGCCAAATCA+AGG | + | chr7_2:81920500-81920519 | None:intergenic | 50.0% | |
| ! | GCTTTTGGTAGGGGCAAGTA+AGG | - | chr7_2:81921322-81921341 | Msa1081990:intron | 50.0% |
| TTTGGTAGGGGCAAGTAAGG+GGG | - | chr7_2:81921325-81921344 | Msa1081990:intron | 50.0% | |
| ! | TTTGCTTGCCTTTTCCCCCA+AGG | + | chr7_2:81921701-81921720 | None:intergenic | 50.0% |
| GACCAAGATAAGGAGGCTTG+GGG | - | chr7_2:81921862-81921881 | Msa1081990:intron | 50.0% | |
| ACCAAGATAAGGAGGCTTGG+GGG | - | chr7_2:81921863-81921882 | Msa1081990:intron | 50.0% | |
| GCCAGGAAAGGTCAAGATGA+CGG | - | chr7_2:81922164-81922183 | Msa1081990:CDS | 50.0% | |
| CCAGGAAAGGTCAAGATGAC+GGG | - | chr7_2:81922165-81922184 | Msa1081990:CDS | 50.0% | |
| ACTCGGAATGCATGGGAACC+TGG | + | chr7_2:81919097-81919116 | None:intergenic | 55.0% | |
| CTCCTCAGTTATGTCCGCCA+AGG | + | chr7_2:81919317-81919336 | None:intergenic | 55.0% | |
| ! | CTTGGCGGACATAACTGAGG+AGG | - | chr7_2:81919315-81919334 | Msa1081990:CDS | 55.0% |
| TCCCCCAAGCCTCCTTATCT+TGG | + | chr7_2:81921867-81921886 | None:intergenic | 55.0% | |
| ATAAGGAGGCTTGGGGGAAG+AGG | - | chr7_2:81921869-81921888 | Msa1081990:intron | 55.0% | |
| TAAGGAGGCTTGGGGGAAGA+GGG | - | chr7_2:81921870-81921889 | Msa1081990:intron | 55.0% | |
| TTGGGGGAAGAGGGCTATTG+AGG | - | chr7_2:81921879-81921898 | Msa1081990:intron | 55.0% | |
| GCAAACTAAGAGCTGCTGCC+AGG | - | chr7_2:81922147-81922166 | Msa1081990:intron | 55.0% | |
| CTAAGAGCTGCTGCCAGGAA+AGG | - | chr7_2:81922152-81922171 | Msa1081990:intron | 55.0% | |
| CCCGTCATCTTGACCTTTCC+TGG | + | chr7_2:81922168-81922187 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 81918949 | 81922208 | 81918949 | ID=Msa1081990;Name=Msa1081990 |
| chr7_2 | mRNA | 81918949 | 81922208 | 81918949 | ID=Msa1081990-mRNA-1;Parent=Msa1081990;Name=Msa1081990-mRNA-1;_AED=0.75;_eAED=0.75;_QI=0|0|0|0.5|1|1|4|0|106 |
| chr7_2 | exon | 81922161 | 81922208 | 81922161 | ID=Msa1081990-mRNA-1:exon:21127;Parent=Msa1081990-mRNA-1 |
| chr7_2 | exon | 81922030 | 81922059 | 81922030 | ID=Msa1081990-mRNA-1:exon:21126;Parent=Msa1081990-mRNA-1 |
| chr7_2 | exon | 81919238 | 81919381 | 81919238 | ID=Msa1081990-mRNA-1:exon:21125;Parent=Msa1081990-mRNA-1 |
| chr7_2 | exon | 81918949 | 81919047 | 81918949 | ID=Msa1081990-mRNA-1:exon:21124;Parent=Msa1081990-mRNA-1 |
| chr7_2 | CDS | 81922161 | 81922208 | 81922161 | ID=Msa1081990-mRNA-1:cds;Parent=Msa1081990-mRNA-1 |
| chr7_2 | CDS | 81922030 | 81922059 | 81922030 | ID=Msa1081990-mRNA-1:cds;Parent=Msa1081990-mRNA-1 |
| chr7_2 | CDS | 81919238 | 81919381 | 81919238 | ID=Msa1081990-mRNA-1:cds;Parent=Msa1081990-mRNA-1 |
| chr7_2 | CDS | 81918949 | 81919047 | 81918949 | ID=Msa1081990-mRNA-1:cds;Parent=Msa1081990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
