AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1126770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1126770 MtrunA17_Chr7g0269341 100.000 82 0 0 1 82 1 82 9.39e-59 174
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1126770 AT3G62790.1 84.146 82 13 0 1 82 1 82 1.16e-48 149
Msa1126770 AT2G47690.1 84.146 82 13 0 1 82 36 117 5.51e-48 148
Msa1126770 AT2G47690.2 73.913 69 13 1 1 69 36 99 4.60e-31 105
Msa1126770 AT2G47690.3 92.000 50 4 0 1 50 36 85 2.50e-30 102

Find 46 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAATTATGCAGTAAATTT+TGG 0.128901 7_3:+78314182 Msa1126770:three_prime_UTR
AAGGTCGTTGCTACGATTTC+TGG 0.156291 7_3:+78310860 Msa1126770:CDS
TCTAAAATTCTTGAGGTTAA+AGG 0.167984 7_3:+78314109 Msa1126770:three_prime_UTR
CCCGTCATCTTGACCTTTCC+TGG 0.181566 7_3:-78313861 None:intergenic
TGAACTATGCTGAGTTAATT+TGG 0.181969 7_3:+78314072 Msa1126770:three_prime_UTR
ACGAAGGAGAACACAATCTT+TGG 0.275115 7_3:-78310920 None:intergenic
GTGGTGGTAGTTTGGTAATT+TGG 0.292325 7_3:+78310704 Msa1126770:five_prime_UTR
AGGGATTGAAGGTACCTCTT+TGG 0.327899 7_3:-78310971 None:intergenic
TGAAAAGAGTGGTGGTAGTT+TGG 0.338848 7_3:+78310696 Msa1126770:five_prime_UTR
TCTCACCGATTTCTGCTTCC+AGG 0.341972 7_3:-78310769 None:intergenic
CGAGTTGAGCGAAAGAAATA+AGG 0.373675 7_3:+78310793 Msa1126770:five_prime_UTR
AGAAGAAATGGCGTCAGGTT+GGG 0.407936 7_3:+78310822 Msa1126770:exon
CGAAGGAGAACACAATCTTT+GGG 0.421263 7_3:-78310919 None:intergenic
GTTGTTCCTCCTTGTAAATC+CGG 0.426154 7_3:-78313820 None:intergenic
GTGTGAGCCCTTCGGCGGGC+AGG 0.428161 7_3:+78313994 Msa1126770:three_prime_UTR
TGCAGTTCCAACGAAGAAAC+CGG 0.439313 7_3:+78313801 Msa1126770:intron
ATAAGGTGAAGGAGAAGAAA+TGG 0.452896 7_3:+78310810 Msa1126770:exon
TGTAAATCCGGTTTCTTCGT+TGG 0.454351 7_3:-78313808 None:intergenic
GAAGAAATGGCGTCAGGTTG+GGG 0.460012 7_3:+78310823 Msa1126770:exon
AAATTGTTTGTAATTCTGCT+TGG 0.480988 7_3:+78313952 Msa1126770:three_prime_UTR
TGTTACCTGGAAGCAGAAAT+CGG 0.481116 7_3:+78310764 Msa1126770:five_prime_UTR
GCAAACTAAGAGCTGCTGCC+AGG 0.505591 7_3:+78313843 Msa1126770:CDS
GCGTCAGGTTGGGGAATCAC+TGG 0.513534 7_3:+78310832 Msa1126770:CDS
GAGAAGAAATGGCGTCAGGT+TGG 0.517260 7_3:+78310821 Msa1126770:exon
GAAGGAGAAGAAATGGCGTC+AGG 0.521379 7_3:+78310817 Msa1126770:exon
AAAAGAAGCCTGCCCGCCGA+AGG 0.526574 7_3:-78314002 None:intergenic
CGTTTGCTCTAAAATTCTTG+AGG 0.528421 7_3:+78314102 Msa1126770:three_prime_UTR
ACGAAGAAACCGGATTTACA+AGG 0.549458 7_3:+78313811 Msa1126770:CDS
CCAGGAAAGGTCAAGATGAC+GGG 0.551383 7_3:+78313861 Msa1126770:CDS
GCCAGGAAAGGTCAAGATGA+CGG 0.552182 7_3:+78313860 Msa1126770:CDS
CTAAGAGCTGCTGCCAGGAA+AGG 0.556365 7_3:+78313848 Msa1126770:CDS
AAGGTACCTCTTTGGAATGG+TGG 0.557593 7_3:-78310963 None:intergenic
TGACCTCCGAATTATTGCAC+AGG 0.568732 7_3:-78314026 None:intergenic
GAGCGAAAGAAATAAGGTGA+AGG 0.572190 7_3:+78310799 Msa1126770:five_prime_UTR
TAAGAAGACGAAGGTTGAGA+TGG 0.574526 7_3:+78310732 Msa1126770:five_prime_UTR
TTGAAGGTACCTCTTTGGAA+TGG 0.575212 7_3:-78310966 None:intergenic
GTACCTCTTTGGAATGGTGG+AGG 0.591122 7_3:-78310960 None:intergenic
AAAGAAGCCTGCCCGCCGAA+GGG 0.592857 7_3:-78314001 None:intergenic
TTCCCTGTGCAATAATTCGG+AGG 0.593205 7_3:+78314023 Msa1126770:three_prime_UTR
ATGGTTCAGAATTTGTTACC+TGG 0.593427 7_3:+78310751 Msa1126770:five_prime_UTR
TTGGCTTTGTAAGAAGACGA+AGG 0.644975 7_3:+78310723 Msa1126770:five_prime_UTR
TGGGGAATCACTGGTAACAA+AGG 0.650188 7_3:+78310841 Msa1126770:CDS
GACCTCCGAATTATTGCACA+GGG 0.651129 7_3:-78314025 None:intergenic
ATGCCTCCACCATTCCAAAG+AGG 0.652254 7_3:+78310957 Msa1126770:CDS
AAGAAACCGGATTTACAAGG+AGG 0.717521 7_3:+78313814 Msa1126770:CDS
ATTCGAAGTAATCTTCACGA+AGG 0.720124 7_3:-78310936 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGTTAAATTAAACATTTA+AGG - chr7_3:78312267-78312286 None:intergenic 10.0%
!! AAAAGTAAAAGAAAGAAAAA+GGG - chr7_3:78310993-78311012 None:intergenic 15.0%
!! TAAAAGTAAAAGAAAGAAAA+AGG - chr7_3:78310994-78311013 None:intergenic 15.0%
!!! TTTTTTGTATTTTGTTTAGA+TGG + chr7_3:78311401-78311420 Msa1126770:intron 15.0%
!! GTTAATTAAATATAGAGTAA+AGG + chr7_3:78311776-78311795 Msa1126770:intron 15.0%
!!! TTAGTTGATAACTTAATTAT+AGG - chr7_3:78312875-78312894 None:intergenic 15.0%
!!! AGTTGTTTTATGTTTTTTTA+AGG + chr7_3:78313656-78313675 Msa1126770:intron 15.0%
!!! GTTGTTTTATGTTTTTTTAA+GGG + chr7_3:78313657-78313676 Msa1126770:intron 15.0%
!!! TACAATAATTTGTTAACATA+TGG - chr7_3:78313731-78313750 None:intergenic 15.0%
!! GAAATATTCAATAAGAAAAA+AGG - chr7_3:78314232-78314251 None:intergenic 15.0%
!! AGTAAAACAAAATAAGGTTT+GGG - chr7_3:78311324-78311343 None:intergenic 20.0%
!! AGGATGAAAAAAAATGATAT+GGG - chr7_3:78311674-78311693 None:intergenic 20.0%
!! AAGGATGAAAAAAAATGATA+TGG - chr7_3:78311675-78311694 None:intergenic 20.0%
!! TTAATTAACAGAAAATACGA+GGG - chr7_3:78311765-78311784 None:intergenic 20.0%
!! TTTAATTAACAGAAAATACG+AGG - chr7_3:78311766-78311785 None:intergenic 20.0%
!! TAAATTAACCACCATATTAT+TGG - chr7_3:78312409-78312428 None:intergenic 20.0%
!! ATAATATGGTGGTTAATTTA+TGG + chr7_3:78312409-78312428 Msa1126770:intron 20.0%
!! ACTTAATTATAGGAAGAAAA+AGG - chr7_3:78312865-78312884 None:intergenic 20.0%
!! TGGATAAAATATTATAGGAA+GGG - chr7_3:78313153-78313172 None:intergenic 20.0%
!! ATGGATAAAATATTATAGGA+AGG - chr7_3:78313154-78313173 None:intergenic 20.0%
!! CTTCATGGATAAAATATTAT+AGG - chr7_3:78313158-78313177 None:intergenic 20.0%
!!! CATAAAACAACTTTTTCTAT+CGG - chr7_3:78313648-78313667 None:intergenic 20.0%
!! ATCAACATTAGTCATTTATA+TGG - chr7_3:78313770-78313789 None:intergenic 20.0%
!!! GATGATTCTTTTTTATTTTG+AGG - chr7_3:78314143-78314162 None:intergenic 20.0%
!!! TGTAATTATGCAGTAAATTT+TGG + chr7_3:78314182-78314201 Msa1126770:three_prime_UTR 20.0%
! AATTGCAAAAATGAAAAGAG+TGG + chr7_3:78310685-78310704 Msa1126770:five_prime_UTR 25.0%
!!! TTTTGAAAAACGAAATCAAG+TGG - chr7_3:78311058-78311077 None:intergenic 25.0%
! CATTAATCTTCACGAAATTA+GGG - chr7_3:78311081-78311100 None:intergenic 25.0%
! TCATTAATCTTCACGAAATT+AGG - chr7_3:78311082-78311101 None:intergenic 25.0%
! TCTCTAACTAAGATAAATTG+AGG - chr7_3:78311131-78311150 None:intergenic 25.0%
! CAGTAAAACAAAATAAGGTT+TGG - chr7_3:78311325-78311344 None:intergenic 25.0%
!!! AACCTTATTTTGTTTTACTG+TGG + chr7_3:78311325-78311344 Msa1126770:intron 25.0%
!! ACTAGATTTTTCTCATATCA+AGG - chr7_3:78311537-78311556 None:intergenic 25.0%
!! AGAAAGGTATAATTGAAAAG+AGG + chr7_3:78311586-78311605 Msa1126770:intron 25.0%
!! GAAAGGTATAATTGAAAAGA+GGG + chr7_3:78311587-78311606 Msa1126770:intron 25.0%
!!! ATTTGTTTTCTCTCAATTTG+AGG + chr7_3:78311627-78311646 Msa1126770:intron 25.0%
!!! TTTGTTTTCTCTCAATTTGA+GGG + chr7_3:78311628-78311647 Msa1126770:intron 25.0%
! TAATTAACAGAAAATACGAG+GGG - chr7_3:78311764-78311783 None:intergenic 25.0%
! GTTAAACTATAATTGCTACA+GGG - chr7_3:78311857-78311876 None:intergenic 25.0%
! AATAGACTGAAATTGAATGT+AGG - chr7_3:78311879-78311898 None:intergenic 25.0%
! GAAAAATTGATACATGATGA+TGG + chr7_3:78312025-78312044 Msa1126770:intron 25.0%
! TATGATTCTCCAATAACTTA+CGG + chr7_3:78312346-78312365 Msa1126770:intron 25.0%
!! TGAGGTTATAATTTTTCATG+TGG + chr7_3:78312467-78312486 Msa1126770:intron 25.0%
! AGTTGACAAAAATTGAGTTA+TGG + chr7_3:78312716-78312735 Msa1126770:intron 25.0%
!! TTTTTCTTGTTACGTTTATC+TGG + chr7_3:78312768-78312787 Msa1126770:intron 25.0%
!!! TAAAGGTCTTTTAGCTTATT+TGG + chr7_3:78312521-78312540 Msa1126770:intron 25.0%
! TTATCAACTAATATTGCTCT+GGG + chr7_3:78312884-78312903 Msa1126770:intron 25.0%
! TTTATCCATGAAGTTTACTT+TGG + chr7_3:78313165-78313184 Msa1126770:intron 25.0%
!! GTAACTTCTTTTTATGTTTG+TGG + chr7_3:78313288-78313307 Msa1126770:intron 25.0%
! ATTTAAATCAACCAGTCTTT+AGG - chr7_3:78313426-78313445 None:intergenic 25.0%
! AAATTGTTTGTAATTCTGCT+TGG + chr7_3:78313952-78313971 Msa1126770:three_prime_UTR 25.0%
!! TCTAAAATTCTTGAGGTTAA+AGG + chr7_3:78314109-78314128 Msa1126770:three_prime_UTR 25.0%
AAGAAAGAAAAAGGGATTGA+AGG - chr7_3:78310985-78311004 None:intergenic 30.0%
TGCCACAGTAAAACAAAATA+AGG - chr7_3:78311330-78311349 None:intergenic 30.0%
TTTACATCGAACAAAACAAC+AGG - chr7_3:78311462-78311481 None:intergenic 30.0%
CAGATGAGAAATAGTTAGAA+AGG + chr7_3:78311570-78311589 Msa1126770:intron 30.0%
AAACAAATAGCTTGAGAAGA+AGG - chr7_3:78311615-78311634 None:intergenic 30.0%
! TTGTTTTCTCTCAATTTGAG+GGG + chr7_3:78311629-78311648 Msa1126770:intron 30.0%
AAAAAATGATATGGGACTCA+CGG - chr7_3:78311666-78311685 None:intergenic 30.0%
!!! TTTTTTCTCCACAACACAAT+GGG + chr7_3:78311696-78311715 Msa1126770:intron 30.0%
GGTTAAACTATAATTGCTAC+AGG - chr7_3:78311858-78311877 None:intergenic 30.0%
TCAACCAATGAAAACAATAC+AGG + chr7_3:78311901-78311920 Msa1126770:intron 30.0%
CAACCAATGAAAACAATACA+GGG + chr7_3:78311902-78311921 Msa1126770:intron 30.0%
! AATCCCTGTATTGTTTTCAT+TGG - chr7_3:78311908-78311927 None:intergenic 30.0%
!! AAATTGATACATGATGATGG+TGG + chr7_3:78312028-78312047 Msa1126770:intron 30.0%
!! TTAACATGTGTTACTTGGTT+AGG - chr7_3:78312106-78312125 None:intergenic 30.0%
AATCTACATCAACCTTGATT+TGG + chr7_3:78312181-78312200 Msa1126770:intron 30.0%
AGTGAACTTGGAATTACAAT+GGG + chr7_3:78312240-78312259 Msa1126770:intron 30.0%
!!! GCATTTGGTTTTGTTTCATA+TGG + chr7_3:78312431-78312450 Msa1126770:intron 30.0%
! TTTTTCTCGTTACGTTTATC+TGG + chr7_3:78312497-78312516 Msa1126770:intron 30.0%
GCATGACAAAATAAGCTAAA+AGG - chr7_3:78312530-78312549 None:intergenic 30.0%
! AATAGAGTAGACTAGCTATT+TGG - chr7_3:78312617-78312636 None:intergenic 30.0%
TAATGTGTGGTTGATTGAAA+AGG - chr7_3:78312678-78312697 None:intergenic 30.0%
GCTATTATGTTTGTAATGTG+TGG - chr7_3:78312691-78312710 None:intergenic 30.0%
TGTTACGTTTATCTGGTTAA+AGG + chr7_3:78312775-78312794 Msa1126770:intron 30.0%
ATCTTACAATCAGGTACTTT+GGG + chr7_3:78312823-78312842 Msa1126770:intron 30.0%
GTTATCAACTAATATTGCTC+TGG + chr7_3:78312883-78312902 Msa1126770:intron 30.0%
ATATTATAGGAAGGGTTTCT+AGG - chr7_3:78313145-78313164 None:intergenic 30.0%
TTGGTGAGAAAAGTTTATTC+TGG + chr7_3:78313184-78313203 Msa1126770:intron 30.0%
! TTTCGAAGGAATTTGAAACA+AGG - chr7_3:78313343-78313362 None:intergenic 30.0%
! TGCTGTAATATAGTTTTCGA+AGG - chr7_3:78313357-78313376 None:intergenic 30.0%
AATCTGATTGTGCTAATCAT+GGG - chr7_3:78313475-78313494 None:intergenic 30.0%
AAATCTGATTGTGCTAATCA+TGG - chr7_3:78313476-78313495 None:intergenic 30.0%
TTGTTAACATATGGAACACT+GGG - chr7_3:78313722-78313741 None:intergenic 30.0%
TTTGTTAACATATGGAACAC+TGG - chr7_3:78313723-78313742 None:intergenic 30.0%
TGAACTATGCTGAGTTAATT+TGG + chr7_3:78314072-78314091 Msa1126770:three_prime_UTR 30.0%
TGCAAAAATGAAAAGAGTGG+TGG + chr7_3:78310688-78310707 Msa1126770:five_prime_UTR 35.0%
!! ATGGTTCAGAATTTGTTACC+TGG + chr7_3:78310751-78310770 Msa1126770:five_prime_UTR 35.0%
ATAAGGTGAAGGAGAAGAAA+TGG + chr7_3:78310810-78310829 Msa1126770:exon 35.0%
ATTCGAAGTAATCTTCACGA+AGG - chr7_3:78310939-78310958 None:intergenic 35.0%
! GATGTCGATTATGGGTTATT+GGG + chr7_3:78311230-78311249 Msa1126770:intron 35.0%
TTATTGGGATGCAATGTATC+CGG + chr7_3:78311245-78311264 Msa1126770:intron 35.0%
CCGAACTTTAATCATTGTTC+GGG - chr7_3:78311283-78311302 None:intergenic 35.0%
CCCGAACAATGATTAAAGTT+CGG + chr7_3:78311280-78311299 Msa1126770:intron 35.0%
CCCGAACTTTAATCATTGTT+CGG - chr7_3:78311284-78311303 None:intergenic 35.0%
CCGAACAATGATTAAAGTTC+GGG + chr7_3:78311281-78311300 Msa1126770:intron 35.0%
! CTATTTCTCATCTGTGATAC+AGG - chr7_3:78311564-78311583 None:intergenic 35.0%
TGTGTTGTGGAGAAAAAACA+AGG - chr7_3:78311694-78311713 None:intergenic 35.0%
!!! GTTTTTTCTCCACAACACAA+TGG + chr7_3:78311695-78311714 Msa1126770:intron 35.0%
! AATTTTCTCCCATTGTGTTG+TGG - chr7_3:78311707-78311726 None:intergenic 35.0%
! TAGGCACTTGTTAGTAAACA+GGG + chr7_3:78311939-78311958 Msa1126770:intron 35.0%
! GTCTGTTAACATGTGTTACT+TGG - chr7_3:78312111-78312130 None:intergenic 35.0%
CAACAGAATTACAGTGAACT+TGG + chr7_3:78312228-78312247 Msa1126770:intron 35.0%
CAGTGAACTTGGAATTACAA+TGG + chr7_3:78312239-78312258 Msa1126770:intron 35.0%
TTTAAGGATGTAAAGTCCTG+TGG + chr7_3:78312380-78312399 Msa1126770:intron 35.0%
GGTGGTTAATTTATGGCATT+TGG + chr7_3:78312416-78312435 Msa1126770:intron 35.0%
CGTTACGTTTATCTGGTTAA+AGG + chr7_3:78312504-78312523 Msa1126770:intron 35.0%
!!! TGTCATGCTGATTTTTCATG+TGG + chr7_3:78312580-78312599 Msa1126770:intron 35.0%
!!! GTCATGCTGATTTTTCATGT+GGG + chr7_3:78312581-78312600 Msa1126770:intron 35.0%
!!! TCATGCTGATTTTTCATGTG+GGG + chr7_3:78312582-78312601 Msa1126770:intron 35.0%
CTCATATTTCAGCAGATGTT+TGG - chr7_3:78312644-78312663 None:intergenic 35.0%
GGAATATGACAACAGTCATA+TGG + chr7_3:78312737-78312756 Msa1126770:intron 35.0%
GATCTTACAATCAGGTACTT+TGG + chr7_3:78312822-78312841 Msa1126770:intron 35.0%
! AGGTACTTTGGGTACATTTT+AGG + chr7_3:78312834-78312853 Msa1126770:intron 35.0%
AAGCATTCTTTCCTACTACA+TGG - chr7_3:78313002-78313021 None:intergenic 35.0%
! GTAGTAGGAAAGAATGCTTT+TGG + chr7_3:78313003-78313022 Msa1126770:intron 35.0%
! TAGGAAAGAATGCTTTTGGT+AGG + chr7_3:78313007-78313026 Msa1126770:intron 35.0%
! AGGAAAGAATGCTTTTGGTA+GGG + chr7_3:78313008-78313027 Msa1126770:intron 35.0%
GGGGAAACTAAAACATATGT+GGG + chr7_3:78313064-78313083 Msa1126770:intron 35.0%
!! TGGGAAGTATTGAAAATGAC+TGG + chr7_3:78313083-78313102 Msa1126770:intron 35.0%
CTTTGTTGCATAAAGAGCTT+TGG + chr7_3:78313115-78313134 Msa1126770:intron 35.0%
TCTCACCAAAGTAAACTTCA+TGG - chr7_3:78313173-78313192 None:intergenic 35.0%
TTATTCTGGTACTCAAGTTC+AGG + chr7_3:78313198-78313217 Msa1126770:intron 35.0%
!! GACATTCTCTACTGCTTTTA+AGG - chr7_3:78313224-78313243 None:intergenic 35.0%
!!! ACCCATTGTGAATTAGCTTT+TGG + chr7_3:78313259-78313278 Msa1126770:intron 35.0%
GCCAAAAGCTAATTCACAAT+GGG - chr7_3:78313263-78313282 None:intergenic 35.0%
TGCCAAAAGCTAATTCACAA+TGG - chr7_3:78313264-78313283 None:intergenic 35.0%
!!! GTGAATTAGCTTTTGGCAAA+TGG + chr7_3:78313266-78313285 Msa1126770:intron 35.0%
!! TAGTGCTTTTTATGCACCTT+GGG + chr7_3:78313378-78313397 Msa1126770:intron 35.0%
GTAAAACAAGACCTAAAGAC+TGG + chr7_3:78313412-78313431 Msa1126770:intron 35.0%
GATTAGCACAATCAGATTTG+TGG + chr7_3:78313477-78313496 Msa1126770:intron 35.0%
ACAGAAAGTTGACCAAGATA+AGG + chr7_3:78313548-78313567 Msa1126770:intron 35.0%
TGAGGAAAGAAAGAAACTGT+TGG + chr7_3:78313593-78313612 Msa1126770:intron 35.0%
GAGGAAAGAAAGAAACTGTT+GGG + chr7_3:78313594-78313613 Msa1126770:intron 35.0%
! CTTTTCCCTGTGCAATAATT+CGG + chr7_3:78314020-78314039 Msa1126770:three_prime_UTR 35.0%
!! CGTTTGCTCTAAAATTCTTG+AGG + chr7_3:78314102-78314121 Msa1126770:three_prime_UTR 35.0%
TGAAAAGAGTGGTGGTAGTT+TGG + chr7_3:78310696-78310715 Msa1126770:five_prime_UTR 40.0%
! GTGGTGGTAGTTTGGTAATT+TGG + chr7_3:78310704-78310723 Msa1126770:five_prime_UTR 40.0%
!! TTGGCTTTGTAAGAAGACGA+AGG + chr7_3:78310723-78310742 Msa1126770:five_prime_UTR 40.0%
TAAGAAGACGAAGGTTGAGA+TGG + chr7_3:78310732-78310751 Msa1126770:five_prime_UTR 40.0%
TGTTACCTGGAAGCAGAAAT+CGG + chr7_3:78310764-78310783 Msa1126770:five_prime_UTR 40.0%
! CGAGTTGAGCGAAAGAAATA+AGG + chr7_3:78310793-78310812 Msa1126770:five_prime_UTR 40.0%
GAGCGAAAGAAATAAGGTGA+AGG + chr7_3:78310799-78310818 Msa1126770:five_prime_UTR 40.0%
CGAAGGAGAACACAATCTTT+GGG - chr7_3:78310922-78310941 None:intergenic 40.0%
ACGAAGGAGAACACAATCTT+TGG - chr7_3:78310923-78310942 None:intergenic 40.0%
!! TTGAAGGTACCTCTTTGGAA+TGG - chr7_3:78310969-78310988 None:intergenic 40.0%
! TCTGACTCGATGTCGATTAT+GGG + chr7_3:78311222-78311241 Msa1126770:intron 40.0%
! CGATGTCGATTATGGGTTAT+TGG + chr7_3:78311229-78311248 Msa1126770:intron 40.0%
! TTTTCTCTCAATTTGAGGGG+AGG + chr7_3:78311632-78311651 Msa1126770:intron 40.0%
! CTAGGCACTTGTTAGTAAAC+AGG + chr7_3:78311938-78311957 Msa1126770:intron 40.0%
! AGGCACTTGTTAGTAAACAG+GGG + chr7_3:78311940-78311959 Msa1126770:intron 40.0%
TTGTTAGTAAACAGGGGATG+AGG + chr7_3:78311946-78311965 Msa1126770:intron 40.0%
ACAGACTTAACATCCTGTAG+TGG + chr7_3:78312125-78312144 Msa1126770:intron 40.0%
CAGACTTAACATCCTGTAGT+GGG + chr7_3:78312126-78312145 Msa1126770:intron 40.0%
GTGTCATGACCGTAAGTTAT+TGG - chr7_3:78312358-78312377 None:intergenic 40.0%
TACGGTCATGACACAGTTTA+AGG + chr7_3:78312364-78312383 Msa1126770:intron 40.0%
TATGGCGCAGTTTGATTATG+AGG + chr7_3:78312449-78312468 Msa1126770:intron 40.0%
GTCATGCTGATCTTACAATC+AGG + chr7_3:78312814-78312833 Msa1126770:intron 40.0%
TACATGGCTATTGAGGTGAA+AGG - chr7_3:78312986-78313005 None:intergenic 40.0%
TTCCTACTACATGGCTATTG+AGG - chr7_3:78312993-78313012 None:intergenic 40.0%
! GGAAAGAATGCTTTTGGTAG+GGG + chr7_3:78313009-78313028 Msa1126770:intron 40.0%
GTGAAACTTACCTGCTTGTT+GGG + chr7_3:78313043-78313062 Msa1126770:intron 40.0%
! TGAAACTTACCTGCTTGTTG+GGG + chr7_3:78313044-78313063 Msa1126770:intron 40.0%
GGGGGAAACTAAAACATATG+TGG + chr7_3:78313063-78313082 Msa1126770:intron 40.0%
!! CTAGTGCTTTTTATGCACCT+TGG + chr7_3:78313377-78313396 Msa1126770:intron 40.0%
!! AGTGCTTTTTATGCACCTTG+GGG + chr7_3:78313379-78313398 Msa1126770:intron 40.0%
CACAATCAGATTTGTGGCAT+GGG + chr7_3:78313483-78313502 Msa1126770:intron 40.0%
CAATAGAAACTCTACTCGCA+AGG - chr7_3:78313516-78313535 None:intergenic 40.0%
GAAAGTTGACCAAGATAAGG+AGG + chr7_3:78313551-78313570 Msa1126770:intron 40.0%
TGTAAATCCGGTTTCTTCGT+TGG - chr7_3:78313811-78313830 None:intergenic 40.0%
ACGAAGAAACCGGATTTACA+AGG + chr7_3:78313811-78313830 Msa1126770:CDS 40.0%
AAGAAACCGGATTTACAAGG+AGG + chr7_3:78313814-78313833 Msa1126770:CDS 40.0%
GTTGTTCCTCCTTGTAAATC+CGG - chr7_3:78313823-78313842 None:intergenic 40.0%
AGAAGAAATGGCGTCAGGTT+GGG + chr7_3:78310822-78310841 Msa1126770:exon 45.0%
TGGGGAATCACTGGTAACAA+AGG + chr7_3:78310841-78310860 Msa1126770:CDS 45.0%
AAGGTCGTTGCTACGATTTC+TGG + chr7_3:78310860-78310879 Msa1126770:CDS 45.0%
!! AAGGTACCTCTTTGGAATGG+TGG - chr7_3:78310966-78310985 None:intergenic 45.0%
!! AGGGATTGAAGGTACCTCTT+TGG - chr7_3:78310974-78310993 None:intergenic 45.0%
CATAATCGACATCGAGTCAG+AGG - chr7_3:78311223-78311242 None:intergenic 45.0%
! CTCTGACTCGATGTCGATTA+TGG + chr7_3:78311221-78311240 Msa1126770:intron 45.0%
TTAGTAAACAGGGGATGAGG+TGG + chr7_3:78311949-78311968 Msa1126770:intron 45.0%
TACTTGGTTAGGCAGTTGGT+TGG - chr7_3:78312095-78312114 None:intergenic 45.0%
!! GTGTTACTTGGTTAGGCAGT+TGG - chr7_3:78312099-78312118 None:intergenic 45.0%
AGAAATGAGAGTCCCACTAC+AGG - chr7_3:78312141-78312160 None:intergenic 45.0%
! CGAGAGAGAGCATGATTGAA+TGG + chr7_3:78312204-78312223 Msa1126770:intron 45.0%
TCCTGTGGCTGCCAATAATA+TGG + chr7_3:78312395-78312414 Msa1126770:intron 45.0%
ACCATATTATTGGCAGCCAC+AGG - chr7_3:78312399-78312418 None:intergenic 45.0%
TGTGGCTGCCAATAATATGG+TGG + chr7_3:78312398-78312417 Msa1126770:intron 45.0%
CACCTCAATAGCCATGTAGT+AGG + chr7_3:78312988-78313007 Msa1126770:intron 45.0%
! CTTTTGGTAGGGGCAAGTAA+GGG + chr7_3:78313019-78313038 Msa1126770:intron 45.0%
! TTTTGGTAGGGGCAAGTAAG+GGG + chr7_3:78313020-78313039 Msa1126770:intron 45.0%
GGTGAAACTTACCTGCTTGT+TGG + chr7_3:78313042-78313061 Msa1126770:intron 45.0%
! GAAACTTACCTGCTTGTTGG+GGG + chr7_3:78313045-78313064 Msa1126770:intron 45.0%
! TTTAGTTTCCCCCAACAAGC+AGG - chr7_3:78313056-78313075 None:intergenic 45.0%
!! GTGCTTTTTATGCACCTTGG+GGG + chr7_3:78313380-78313399 Msa1126770:intron 45.0%
TTTATGCACCTTGGGGGAAA+AGG + chr7_3:78313386-78313405 Msa1126770:intron 45.0%
! TTTACTTGCCTTTTCCCCCA+AGG - chr7_3:78313397-78313416 None:intergenic 45.0%
GCACAATCAGATTTGTGGCA+TGG + chr7_3:78313482-78313501 Msa1126770:intron 45.0%
TTGACCAAGATAAGGAGGCT+TGG + chr7_3:78313556-78313575 Msa1126770:intron 45.0%
TGACCAAGATAAGGAGGCTT+GGG + chr7_3:78313557-78313576 Msa1126770:intron 45.0%
TGCAGTTCCAACGAAGAAAC+CGG + chr7_3:78313801-78313820 Msa1126770:intron 45.0%
TTCCCTGTGCAATAATTCGG+AGG + chr7_3:78314023-78314042 Msa1126770:three_prime_UTR 45.0%
GACCTCCGAATTATTGCACA+GGG - chr7_3:78314028-78314047 None:intergenic 45.0%
TGACCTCCGAATTATTGCAC+AGG - chr7_3:78314029-78314048 None:intergenic 45.0%
!! AATTGTAAAAAAAAAAAAAA+AGG - chr7_3:78311017-78311036 None:intergenic 5.0%
!! TCTCACCGATTTCTGCTTCC+AGG - chr7_3:78310772-78310791 None:intergenic 50.0%
GAAGGAGAAGAAATGGCGTC+AGG + chr7_3:78310817-78310836 Msa1126770:exon 50.0%
GAGAAGAAATGGCGTCAGGT+TGG + chr7_3:78310821-78310840 Msa1126770:exon 50.0%
! GAAGAAATGGCGTCAGGTTG+GGG + chr7_3:78310823-78310842 Msa1126770:exon 50.0%
ATGCCTCCACCATTCCAAAG+AGG + chr7_3:78310957-78310976 Msa1126770:CDS 50.0%
!! GTACCTCTTTGGAATGGTGG+AGG - chr7_3:78310963-78310982 None:intergenic 50.0%
! CAAACGCAGCTCTGACGATA+AGG - chr7_3:78311167-78311186 None:intergenic 50.0%
ACATCGAGTCAGAGGCAACA+AGG - chr7_3:78311215-78311234 None:intergenic 50.0%
CAATGTATCCGGCCAACGTT+CGG + chr7_3:78311256-78311275 Msa1126770:intron 50.0%
! CAGGGATTGTGCTGATGTCT+AGG + chr7_3:78311920-78311939 Msa1126770:intron 50.0%
AACAAGCAAGCTCGAGAGCT+TGG + chr7_3:78311979-78311998 Msa1126770:intron 50.0%
TGCTCTCTCTCGCCAAATCA+AGG - chr7_3:78312196-78312215 None:intergenic 50.0%
! GCTTTTGGTAGGGGCAAGTA+AGG + chr7_3:78313018-78313037 Msa1126770:intron 50.0%
TTTGGTAGGGGCAAGTAAGG+GGG + chr7_3:78313021-78313040 Msa1126770:intron 50.0%
GACCAAGATAAGGAGGCTTG+GGG + chr7_3:78313558-78313577 Msa1126770:intron 50.0%
ACCAAGATAAGGAGGCTTGG+GGG + chr7_3:78313559-78313578 Msa1126770:intron 50.0%
GCCAGGAAAGGTCAAGATGA+CGG + chr7_3:78313860-78313879 Msa1126770:CDS 50.0%
CCAGGAAAGGTCAAGATGAC+GGG + chr7_3:78313861-78313880 Msa1126770:CDS 50.0%
! TGCGTTTTGTGTGAGCCCTT+CGG + chr7_3:78313986-78314005 Msa1126770:three_prime_UTR 50.0%
GTCAGAGCTGCGTTTGTCTG+TGG + chr7_3:78311171-78311190 Msa1126770:intron 55.0%
CATTGTTCGGGACCGAACGT+TGG - chr7_3:78311271-78311290 None:intergenic 55.0%
ATACGAGGGGAGATGCTGAG+AGG - chr7_3:78311751-78311770 None:intergenic 55.0%
TCCCCCAAGCCTCCTTATCT+TGG - chr7_3:78313563-78313582 None:intergenic 55.0%
ATAAGGAGGCTTGGGGGAAG+AGG + chr7_3:78313565-78313584 Msa1126770:intron 55.0%
TAAGGAGGCTTGGGGGAAGA+GGG + chr7_3:78313566-78313585 Msa1126770:intron 55.0%
TTGGGGGAAGAGGGCTATTG+AGG + chr7_3:78313575-78313594 Msa1126770:intron 55.0%
GCAAACTAAGAGCTGCTGCC+AGG + chr7_3:78313843-78313862 Msa1126770:CDS 55.0%
CTAAGAGCTGCTGCCAGGAA+AGG + chr7_3:78313848-78313867 Msa1126770:CDS 55.0%
CCCGTCATCTTGACCTTTCC+TGG - chr7_3:78313864-78313883 None:intergenic 55.0%
! GTTTTGTGTGAGCCCTTCGG+CGG + chr7_3:78313989-78314008 Msa1126770:three_prime_UTR 55.0%
! TTTTGTGTGAGCCCTTCGGC+GGG + chr7_3:78313990-78314009 Msa1126770:three_prime_UTR 55.0%
!! GCGTCAGGTTGGGGAATCAC+TGG + chr7_3:78310832-78310851 Msa1126770:CDS 60.0%
AAAGAAGCCTGCCCGCCGAA+GGG - chr7_3:78314004-78314023 None:intergenic 60.0%
AAAAGAAGCCTGCCCGCCGA+AGG - chr7_3:78314005-78314024 None:intergenic 60.0%
GTTCGGGACCGAACGTTGGC+CGG - chr7_3:78311267-78311286 None:intergenic 65.0%
GTGTGAGCCCTTCGGCGGGC+AGG + chr7_3:78313994-78314013 Msa1126770:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 78310678 78314262 78310678 ID=Msa1126770;Name=Msa1126770
chr7_3 mRNA 78310678 78314262 78310678 ID=Msa1126770-mRNA-1;Parent=Msa1126770;Name=Msa1126770-mRNA-1;_AED=0.00;_eAED=0.00;_QI=151|1|1|1|0|1|2|358|82
chr7_3 exon 78310678 78310978 78310678 ID=Msa1126770-mRNA-1:exon:21809;Parent=Msa1126770-mRNA-1
chr7_3 exon 78313806 78314262 78313806 ID=Msa1126770-mRNA-1:exon:21810;Parent=Msa1126770-mRNA-1
chr7_3 five_prime_UTR 78310678 78310828 78310678 ID=Msa1126770-mRNA-1:five_prime_utr;Parent=Msa1126770-mRNA-1
chr7_3 CDS 78310829 78310978 78310829 ID=Msa1126770-mRNA-1:cds;Parent=Msa1126770-mRNA-1
chr7_3 CDS 78313806 78313904 78313806 ID=Msa1126770-mRNA-1:cds;Parent=Msa1126770-mRNA-1
chr7_3 three_prime_UTR 78313905 78314262 78313905 ID=Msa1126770-mRNA-1:three_prime_utr;Parent=Msa1126770-mRNA-1
Gene Sequence

>Msa1126770

ATGGCGTCAGGTTGGGGAATCACTGGTAACAAAGGTCGTTGCTACGATTTCTGGATCGATTTCAGCGAGTGCATGTCTACTTGTAGAGAACCCAAAGATTGTGTTCTCCTTCGTGAAGATTACTTCGAATGCCTCCACCATTCCAAAGAGTTCCAACGAAGAAACCGGATTTACAAGGAGGAACAACGCAAACTAAGAGCTGCTGCCAGGAAAGGTCAAGATGACGGGAAAGTTGCTGAACATCATTAG

Protein sequence

>Msa1126770

MASGWGITGNKGRCYDFWIDFSECMSTCREPKDCVLLREDYFECLHHSKEFQRRNRIYKEEQRKLRAAARKGQDDGKVAEHH*