AlfalfaGEDB | Msa1126770

M. sativa cultivar zhongmu-4 / Msa1126770

KEGG: K12890
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0035061 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0097159 GO:1901363
PFAM: PF10200.12

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1126770	XP_024625354.1	100.000	82	0	0	1	82	1	82	1.02e-54	174

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1126770	sp\|Q9LZI6\|NDS5B_ARATH	84.146	82	13	0	1	82	1	82	1.14e-47	149

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1126770	A0A396HCE7	100.000	82	0	0	1	82	1	82	4.88e-55	174

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa1126770	0.845740	3.363138e-59	-8.615850e-47
Msa0002380	Msa1126770	0.821077	4.889990e-53	-8.615850e-47
Msa0002490	Msa1126770	0.850746	1.390928e-60	-8.615850e-47
Msa0002540	Msa1126770	0.803965	2.709645e-49	-8.615850e-47
Msa0003780	Msa1126770	0.812866	3.416658e-51	-8.615850e-47
Msa0004860	Msa1126770	0.813755	2.180072e-51	-8.615850e-47
Msa0004920	Msa1126770	0.800237	1.583839e-48	-8.615850e-47
Msa0004950	Msa1126770	0.823290	1.500176e-53	-8.615850e-47
Msa0004980	Msa1126770	0.842212	2.967967e-58	-8.615850e-47
Msa0006880	Msa1126770	0.833877	4.143255e-56	-8.615850e-47

Showing 1 to 10 of 790 entries

Previous1 2 3 4 5…79Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1126770	MtrunA17_Chr7g0269341	100.000	82	0	0	1	82	1	82	9.39e-59	174

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1126770	AT3G62790.1	84.146	82	13	0	1	82	1	82	1.16e-48	149
Msa1126770	AT2G47690.1	84.146	82	13	0	1	82	36	117	5.51e-48	148
Msa1126770	AT2G47690.2	73.913	69	13	1	1	69	36	99	4.60e-31	105
Msa1126770	AT2G47690.3	92.000	50	4	0	1	50	36	85	2.50e-30	102

Showing 1 to 4 of 4 entries

Previous1Next

Find 46 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGCCTGCCCGCCGA+AGG	0.526574	7_3:-78314002	None:intergenic
AAAGAAGCCTGCCCGCCGAA+GGG	0.592857	7_3:-78314001	None:intergenic
AAATTGTTTGTAATTCTGCT+TGG	0.480988	7_3:+78313952	Msa1126770:three_prime_UTR
AAGAAACCGGATTTACAAGG+AGG	0.717521	7_3:+78313814	Msa1126770:CDS
AAGGTACCTCTTTGGAATGG+TGG	0.557593	7_3:-78310963	None:intergenic
AAGGTCGTTGCTACGATTTC+TGG	0.156291	7_3:+78310860	Msa1126770:CDS
ACGAAGAAACCGGATTTACA+AGG	0.549458	7_3:+78313811	Msa1126770:CDS
ACGAAGGAGAACACAATCTT+TGG	0.275115	7_3:-78310920	None:intergenic
AGAAGAAATGGCGTCAGGTT+GGG	0.407936	7_3:+78310822	Msa1126770:exon
AGGGATTGAAGGTACCTCTT+TGG	0.327899	7_3:-78310971	None:intergenic

Showing 1 to 10 of 46 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAAGAAAAAGGGATTGA+AGG	-	chr7_3:78310985-78311004	None:intergenic	30.0%
TGCCACAGTAAAACAAAATA+AGG	-	chr7_3:78311330-78311349	None:intergenic	30.0%
TTTACATCGAACAAAACAAC+AGG	-	chr7_3:78311462-78311481	None:intergenic	30.0%
CAGATGAGAAATAGTTAGAA+AGG	+	chr7_3:78311570-78311589	Msa1126770:intron	30.0%
AAACAAATAGCTTGAGAAGA+AGG	-	chr7_3:78311615-78311634	None:intergenic	30.0%
AAAAAATGATATGGGACTCA+CGG	-	chr7_3:78311666-78311685	None:intergenic	30.0%
GGTTAAACTATAATTGCTAC+AGG	-	chr7_3:78311858-78311877	None:intergenic	30.0%
TCAACCAATGAAAACAATAC+AGG	+	chr7_3:78311901-78311920	Msa1126770:intron	30.0%
CAACCAATGAAAACAATACA+GGG	+	chr7_3:78311902-78311921	Msa1126770:intron	30.0%
AATCTACATCAACCTTGATT+TGG	+	chr7_3:78312181-78312200	Msa1126770:intron	30.0%

Showing 1 to 10 of 241 entries

Previous1 2 3 4 5…25Next

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	78310678	78314262	78310678	ID=Msa1126770;Name=Msa1126770
chr7_3	mRNA	78310678	78314262	78310678	ID=Msa1126770-mRNA-1;Parent=Msa1126770;Name=Msa1126770-mRNA-1;_AED=0.00;_eAED=0.00;_QI=151\|1\|1\|1\|0\|1\|2\|358\|82
chr7_3	exon	78310678	78310978	78310678	ID=Msa1126770-mRNA-1:exon:21809;Parent=Msa1126770-mRNA-1
chr7_3	exon	78313806	78314262	78313806	ID=Msa1126770-mRNA-1:exon:21810;Parent=Msa1126770-mRNA-1
chr7_3	five_prime_UTR	78310678	78310828	78310678	ID=Msa1126770-mRNA-1:five_prime_utr;Parent=Msa1126770-mRNA-1
chr7_3	CDS	78310829	78310978	78310829	ID=Msa1126770-mRNA-1:cds;Parent=Msa1126770-mRNA-1
chr7_3	CDS	78313806	78313904	78313806	ID=Msa1126770-mRNA-1:cds;Parent=Msa1126770-mRNA-1
chr7_3	three_prime_UTR	78313905	78314262	78313905	ID=Msa1126770-mRNA-1:three_prime_utr;Parent=Msa1126770-mRNA-1

Gene Sequence	>Msa1126770 ATGGCGTCAGGTTGGGGAATCACTGGTAACAAAGGTCGTTGCTACGATTTCTGGATCGATTTCAGCGAGTGCATGTCTACTTGTAGAGAACCCAAAGATTGTGTTCTCCTTCGTGAAGATTACTTCGAATGCCTCCACCATTCCAAAGAGTTCCAACGAAGAAACCGGATTTACAAGGAGGAACAACGCAAACTAAGAGCTGCTGCCAGGAAAGGTCAAGATGACGGGAAAGTTGCTGAACATCATTAG
Protein sequence	>Msa1126770 MASGWGITGNKGRCYDFWIDFSECMSTCREPKDCVLLREDYFECLHHSKEFQRRNRIYKEEQRKLRAAARKGQDDGKVAEHH*