AlfalfaGEDB | Msa1413260

M. sativa cultivar zhongmu-4 / Msa1413260

KEGG: K11088
GO: GO:0000243 GO:0000245 GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005684 GO:0005685 GO:0005686 GO:0005687 GO:0005689 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031974 GO:0031981 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0034715 GO:0034719 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048589 GO:0065003 GO:0070013 GO:0071010 GO:0071011 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1901363 GO:1902494 GO:1990904
PFAM: PF01423.25

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1413260	sp\|Q9LM92\|SMD3B_ARATH	76.027	146	19	3	1	145	1	131	1.30e-66	201

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1413260	A0A2K3NP25	90.345	145	0	1	1	145	1	131	2.54e-87	259

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa1413260	0.828512	8.626088e-55	-8.615850e-47
Msa0029260	Msa1413260	0.803227	3.854124e-49	-8.615850e-47
Msa0029630	Msa1413260	0.843127	1.696029e-58	-8.615850e-47
Msa0033880	Msa1413260	0.803432	3.496782e-49	-8.615850e-47
Msa0037250	Msa1413260	0.822109	2.823713e-53	-8.615850e-47
Msa0043860	Msa1413260	0.804755	1.854818e-49	-8.615850e-47
Msa0046740	Msa1413260	0.846188	2.541572e-59	-8.615850e-47
Msa0048150	Msa1413260	0.803779	2.961832e-49	-8.615850e-47
Msa0048180	Msa1413260	0.834630	2.682866e-56	-8.615850e-47
Msa0056470	Msa1413260	0.848835	4.757767e-60	-8.615850e-47
Msa0068020	Msa1413260	0.830665	2.584469e-55	-8.615850e-47
Msa0076040	Msa1413260	0.854390	1.270657e-61	-8.615850e-47
Msa0079920	Msa1413260	0.811708	6.117019e-51	-8.615850e-47
Msa0082280	Msa1413260	0.821312	4.317065e-53	-8.615850e-47
Msa0090520	Msa1413260	0.808764	2.638564e-50	-8.615850e-47
Msa0091610	Msa1413260	0.805351	1.392169e-49	-8.615850e-47
Msa0093010	Msa1413260	0.827160	1.824091e-54	-8.615850e-47
Msa0096800	Msa1413260	0.818617	1.785436e-52	-8.615850e-47
Msa0097580	Msa1413260	0.801282	9.692964e-49	-8.615850e-47
Msa0115370	Msa1413260	0.800871	1.175985e-48	-8.615850e-47
Msa0115990	Msa1413260	0.815888	7.340616e-52	-8.615850e-47
Msa1345450	Msa1413260	0.809010	2.337569e-50	-8.615850e-47
Msa1349570	Msa1413260	0.839106	1.932541e-57	-8.615850e-47
Msa1356790	Msa1413260	0.801146	1.033448e-48	-8.615850e-47
Msa1362420	Msa1413260	0.809382	1.944820e-50	-8.615850e-47
Msa1362790	Msa1413260	0.852831	3.565374e-61	-8.615850e-47
Msa1363330	Msa1413260	0.823865	1.100355e-53	-8.615850e-47
Msa1363860	Msa1413260	0.801580	8.419869e-49	-8.615850e-47
Msa1369190	Msa1413260	0.882228	1.241895e-70	-8.615850e-47
Msa1370860	Msa1413260	0.828890	6.989683e-55	-8.615850e-47
Msa1376650	Msa1413260	0.828764	7.497811e-55	-8.615850e-47
Msa1379760	Msa1413260	0.830816	2.373231e-55	-8.615850e-47
Msa1382780	Msa1413260	0.805390	1.366186e-49	-8.615850e-47
Msa1386600	Msa1413260	0.823273	1.513681e-53	-8.615850e-47
Msa1413260	Msa1413500	0.825520	4.482804e-54	-8.615850e-47
Msa1413260	Msa1418340	0.845635	3.592106e-59	-8.615850e-47
Msa1413260	Msa1421560	0.806386	8.435308e-50	-8.615850e-47
Msa1413260	Msa1425670	0.976652	3.083208e-142	-8.615850e-47
Msa1413260	Msa1428520	0.800526	1.382947e-48	-8.615850e-47
Msa1413260	Msa1437860	0.805219	1.483858e-49	-8.615850e-47
Msa1413260	Msa1442850	0.811675	6.218171e-51	-8.615850e-47
Msa1413260	Msa1450280	0.859710	3.426279e-63	-8.615850e-47
Msa1413260	Msa1456050	0.895937	5.956706e-76	-8.615850e-47
Msa1413260	Msa1462860	0.879290	1.406111e-69	-8.615850e-47
Msa1413260	Msa1465080	0.849655	2.813189e-60	-8.615850e-47
Msa0604960	Msa1413260	0.803648	3.153179e-49	-8.615850e-47
Msa0610390	Msa1413260	0.811745	6.002982e-51	-8.615850e-47
Msa0610550	Msa1413260	0.814026	1.899660e-51	-8.615850e-47
Msa0615580	Msa1413260	0.832019	1.200383e-55	-8.615850e-47
Msa0615990	Msa1413260	0.815318	9.828612e-52	-8.615850e-47
Msa0620200	Msa1413260	0.824323	8.588524e-54	-8.615850e-47
Msa0623200	Msa1413260	0.803903	2.792043e-49	-8.615850e-47
Msa0631250	Msa1413260	0.825638	4.202365e-54	-8.615850e-47
Msa0633570	Msa1413260	0.833758	4.436863e-56	-8.615850e-47
Msa0650920	Msa1413260	0.800754	1.242548e-48	-8.615850e-47
Msa0651050	Msa1413260	0.846808	1.720549e-59	-8.615850e-47
Msa0661300	Msa1413260	0.856087	4.078649e-62	-8.615850e-47
Msa0662630	Msa1413260	0.813991	1.934104e-51	-8.615850e-47
Msa0666230	Msa1413260	0.848446	6.098850e-60	-8.615850e-47
Msa0672100	Msa1413260	0.809131	2.202336e-50	-8.615850e-47
Msa0687630	Msa1413260	0.809671	1.686343e-50	-8.615850e-47
Msa0690770	Msa1413260	0.830176	3.402948e-55	-8.615850e-47
Msa0692840	Msa1413260	0.813196	2.892699e-51	-8.615850e-47
Msa0692940	Msa1413260	0.827141	1.843185e-54	-8.615850e-47
Msa0693210	Msa1413260	0.839360	1.660137e-57	-8.615850e-47
Msa0697080	Msa1413260	0.804667	1.934832e-49	-8.615850e-47
Msa0698780	Msa1413260	0.861116	1.286068e-63	-8.615850e-47
Msa0699190	Msa1413260	0.800280	1.551730e-48	-8.615850e-47
Msa0704660	Msa1413260	0.800591	1.341080e-48	-8.615850e-47
Msa0706500	Msa1413260	0.811681	6.199385e-51	-8.615850e-47
Msa0712610	Msa1413260	0.808904	2.462740e-50	-8.615850e-47
Msa0729200	Msa1413260	0.829056	6.370738e-55	-8.615850e-47
Msa0752700	Msa1413260	0.816720	4.781187e-52	-8.615850e-47
Msa0766080	Msa1413260	0.817031	4.071131e-52	-8.615850e-47
Msa0769590	Msa1413260	0.829982	3.794668e-55	-8.615850e-47
Msa0781080	Msa1413260	0.801919	7.174156e-49	-8.615850e-47
Msa0785130	Msa1413260	0.857209	1.907391e-62	-8.615850e-47
Msa0792420	Msa1413260	0.807745	4.349874e-50	-8.615850e-47
Msa0806880	Msa1413260	0.831997	1.215094e-55	-8.615850e-47
Msa0808800	Msa1413260	0.870305	1.613488e-66	-8.615850e-47
Msa0817540	Msa1413260	0.824395	8.260945e-54	-8.615850e-47
Msa0831100	Msa1413260	0.804565	2.032353e-49	-8.615850e-47
Msa0125450	Msa1413260	0.857766	1.305275e-62	-8.615850e-47
Msa0125540	Msa1413260	0.864860	8.969353e-65	-8.615850e-47
Msa0127850	Msa1413260	0.818430	1.967937e-52	-8.615850e-47
Msa0128860	Msa1413260	0.834928	2.256394e-56	-8.615850e-47
Msa0131590	Msa1413260	0.827560	1.462326e-54	-8.615850e-47
Msa0137990	Msa1413260	0.806627	7.505933e-50	-8.615850e-47
Msa0140820	Msa1413260	0.817441	3.291963e-52	-8.615850e-47
Msa0140850	Msa1413260	0.804265	2.347048e-49	-8.615850e-47
Msa0149190	Msa1413260	0.857239	1.868584e-62	-8.615850e-47
Msa0149200	Msa1413260	0.825689	4.088355e-54	-8.615850e-47
Msa0159440	Msa1413260	0.801550	8.540880e-49	-8.615850e-47
Msa0165950	Msa1413260	0.804514	2.082498e-49	-8.615850e-47
Msa0166750	Msa1413260	0.801872	7.334036e-49	-8.615850e-47
Msa0167480	Msa1413260	0.808066	3.716783e-50	-8.615850e-47
Msa0169300	Msa1413260	0.805496	1.298163e-49	-8.615850e-47
Msa0169610	Msa1413260	0.807408	5.130149e-50	-8.615850e-47
Msa0174730	Msa1413260	0.833321	5.703664e-56	-8.615850e-47
Msa0174770	Msa1413260	0.828621	8.121718e-55	-8.615850e-47
Msa0177960	Msa1413260	0.835559	1.563839e-56	-8.615850e-47
Msa0179030	Msa1413260	0.814075	1.853197e-51	-8.615850e-47
Msa0181610	Msa1413260	0.847655	1.008207e-59	-8.615850e-47
Msa0183900	Msa1413260	0.810715	1.004398e-50	-8.615850e-47
Msa0187930	Msa1413260	0.816384	5.687065e-52	-8.615850e-47
Msa0189700	Msa1413260	0.815445	9.209209e-52	-8.615850e-47
Msa0194540	Msa1413260	0.812183	4.818449e-51	-8.615850e-47
Msa0199880	Msa1413260	0.822305	2.543172e-53	-8.615850e-47
Msa0218830	Msa1413260	0.806707	7.216603e-50	-8.615850e-47
Msa0219120	Msa1413260	0.807729	4.384859e-50	-8.615850e-47
Msa0224560	Msa1413260	0.801848	7.417499e-49	-8.615850e-47
Msa0230490	Msa1413260	0.818064	2.382127e-52	-8.615850e-47
Msa0231100	Msa1413260	0.810124	1.347005e-50	-8.615850e-47
Msa0232010	Msa1413260	0.816685	4.869028e-52	-8.615850e-47
Msa0232080	Msa1413260	0.817192	3.745246e-52	-8.615850e-47
Msa1227690	Msa1413260	0.850419	1.718657e-60	-8.615850e-47
Msa1230580	Msa1413260	0.820056	8.391422e-53	-8.615850e-47
Msa1251160	Msa1413260	0.825843	3.757322e-54	-8.615850e-47
Msa1257510	Msa1413260	0.846595	1.967373e-59	-8.615850e-47
Msa1269790	Msa1413260	0.825446	4.668191e-54	-8.615850e-47
Msa1307950	Msa1413260	0.805866	1.085400e-49	-8.615850e-47
Msa1321790	Msa1413260	0.841017	6.129533e-58	-8.615850e-47
Msa1331250	Msa1413260	0.831714	1.427687e-55	-8.615850e-47
Msa1338190	Msa1413260	0.860520	1.950483e-63	-8.615850e-47
Msa1343260	Msa1413260	0.820844	5.534899e-53	-8.615850e-47
Msa1343290	Msa1413260	0.804531	2.065816e-49	-8.615850e-47
Msa0369450	Msa1413260	0.840868	6.710054e-58	-8.615850e-47
Msa0376820	Msa1413260	0.822127	2.797258e-53	-8.615850e-47
Msa0377820	Msa1413260	0.810942	8.970064e-51	-8.615850e-47
Msa0380300	Msa1413260	0.821642	3.622346e-53	-8.615850e-47
Msa0385500	Msa1413260	0.811618	6.397980e-51	-8.615850e-47
Msa0390030	Msa1413260	0.837487	5.049032e-57	-8.615850e-47
Msa0403730	Msa1413260	0.804505	2.092219e-49	-8.615850e-47
Msa0414800	Msa1413260	0.811837	5.732770e-51	-8.615850e-47
Msa0423750	Msa1413260	0.846987	1.537179e-59	-8.615850e-47
Msa0425470	Msa1413260	0.809318	2.007512e-50	-8.615850e-47
Msa0427150	Msa1413260	0.838797	2.322766e-57	-8.615850e-47
Msa0432210	Msa1413260	0.831328	1.776106e-55	-8.615850e-47
Msa0443390	Msa1413260	0.856718	2.662058e-62	-8.615850e-47
Msa0456430	Msa1413260	0.837824	4.139277e-57	-8.615850e-47
Msa0470530	Msa1413260	0.834446	2.984006e-56	-8.615850e-47
Msa0471960	Msa1413260	0.816687	4.862701e-52	-8.615850e-47
Msa0472130	Msa1413260	0.816245	6.107290e-52	-8.615850e-47
Msa0481480	Msa1413260	0.812236	4.691822e-51	-8.615850e-47
Msa0994290	Msa1413260	0.808448	3.082561e-50	-8.615850e-47
Msa1019240	Msa1413260	0.843795	1.125006e-58	-8.615850e-47
Msa1019260	Msa1413260	0.853393	2.461850e-61	-8.615850e-47
Msa1023160	Msa1413260	0.818703	1.707094e-52	-8.615850e-47
Msa1025940	Msa1413260	0.812789	3.552082e-51	-8.615850e-47
Msa1037510	Msa1413260	0.816331	5.843803e-52	-8.615850e-47
Msa1039900	Msa1413260	0.853319	2.585697e-61	-8.615850e-47
Msa1072710	Msa1413260	0.847380	1.199412e-59	-8.615850e-47
Msa1078270	Msa1413260	0.815701	8.077803e-52	-8.615850e-47
Msa1085470	Msa1413260	0.821996	2.999372e-53	-8.615850e-47
Msa1104140	Msa1413260	0.805763	1.141009e-49	-8.615850e-47
Msa1104210	Msa1413260	0.833871	4.156551e-56	-8.615850e-47
Msa0244780	Msa1413260	0.814920	1.205023e-51	-8.615850e-47
Msa0245580	Msa1413260	0.814155	1.779619e-51	-8.615850e-47
Msa0258850	Msa1413260	0.811345	7.335275e-51	-8.615850e-47
Msa0262480	Msa1413260	0.805285	1.436855e-49	-8.615850e-47
Msa0268130	Msa1413260	0.806964	6.369517e-50	-8.615850e-47
Msa0269470	Msa1413260	0.823417	1.401161e-53	-8.615850e-47
Msa0275360	Msa1413260	0.800319	1.524074e-48	-8.615850e-47
Msa0280430	Msa1413260	0.807466	4.987023e-50	-8.615850e-47
Msa0296250	Msa1413260	0.805338	1.400655e-49	-8.615850e-47
Msa0298200	Msa1413260	0.812348	4.434777e-51	-8.615850e-47
Msa0298990	Msa1413260	0.806994	6.278007e-50	-8.615850e-47
Msa0304590	Msa1413260	0.821054	4.951084e-53	-8.615850e-47
Msa0304660	Msa1413260	0.820943	5.250701e-53	-8.615850e-47
Msa0317910	Msa1413260	0.863880	1.815208e-64	-8.615850e-47
Msa0320590	Msa1413260	0.822185	2.712047e-53	-8.615850e-47
Msa0331700	Msa1413260	0.820815	5.620460e-53	-8.615850e-47
Msa0336010	Msa1413260	0.818832	1.595365e-52	-8.615850e-47
Msa0348830	Msa1413260	0.890684	7.884431e-74	-8.615850e-47
Msa0358770	Msa1413260	0.802638	5.101803e-49	-8.615850e-47
Msa1121680	Msa1413260	0.807196	5.688198e-50	-8.615850e-47
Msa1123350	Msa1413260	0.811055	8.476984e-51	-8.615850e-47
Msa1123500	Msa1413260	0.826745	2.291448e-54	-8.615850e-47
Msa1124070	Msa1413260	0.806407	8.349287e-50	-8.615850e-47
Msa1125860	Msa1413260	0.802899	4.507154e-49	-8.615850e-47
Msa1126510	Msa1413260	0.845707	3.434277e-59	-8.615850e-47
Msa1126770	Msa1413260	0.825450	4.656325e-54	-8.615850e-47
Msa1126830	Msa1413260	0.869666	2.608982e-66	-8.615850e-47
Msa1130980	Msa1413260	0.843571	1.290873e-58	-8.615850e-47
Msa1165780	Msa1413260	0.856087	4.077658e-62	-8.615850e-47
Msa1165940	Msa1413260	0.848000	8.098908e-60	-8.615850e-47
Msa1166860	Msa1413260	0.838800	2.319116e-57	-8.615850e-47
Msa1166870	Msa1413260	0.824397	8.250672e-54	-8.615850e-47
Msa1169770	Msa1413260	0.814774	1.298004e-51	-8.615850e-47
Msa1175350	Msa1413260	0.810525	1.103972e-50	-8.615850e-47
Msa1184370	Msa1413260	0.846955	1.568980e-59	-8.615850e-47
Msa1208020	Msa1413260	0.860087	2.637987e-63	-8.615850e-47
Msa0484740	Msa1413260	0.807507	4.886783e-50	-8.615850e-47
Msa0516600	Msa1413260	0.812809	3.516175e-51	-8.615850e-47
Msa0521050	Msa1413260	0.882541	9.551437e-71	-8.615850e-47
Msa0524500	Msa1413260	0.824636	7.251149e-54	-8.615850e-47
Msa0526540	Msa1413260	0.824481	7.886435e-54	-8.615850e-47
Msa0527150	Msa1413260	0.829582	4.748593e-55	-8.615850e-47
Msa0531650	Msa1413260	0.838262	3.192775e-57	-8.615850e-47
Msa0534750	Msa1413260	0.837420	5.251848e-57	-8.615850e-47
Msa0544540	Msa1413260	0.819298	1.249835e-52	-8.615850e-47
Msa0552810	Msa1413260	0.817105	3.918333e-52	-8.615850e-47
Msa0559790	Msa1413260	0.809078	2.260487e-50	-8.615850e-47
Msa0573350	Msa1413260	0.845162	4.821981e-59	-8.615850e-47
Msa0576940	Msa1413260	0.810008	1.426693e-50	-8.615850e-47
Msa0580230	Msa1413260	0.815283	1.000813e-51	-8.615850e-47
Msa0580280	Msa1413260	0.848854	4.700675e-60	-8.615850e-47
Msa0581070	Msa1413260	0.845647	3.564773e-59	-8.615850e-47
Msa0581110	Msa1413260	0.869292	3.453179e-66	-8.615850e-47
Msa0588360	Msa1413260	0.810632	1.046709e-50	-8.615850e-47
Msa0590940	Msa1413260	0.837529	4.926682e-57	-8.615850e-47
Msa0593700	Msa1413260	0.822786	1.966479e-53	-8.615850e-47
Msa0595170	Msa1413260	0.803018	4.257659e-49	-8.615850e-47
Msa0858440	Msa1413260	0.804525	2.072072e-49	-8.615850e-47
Msa0880470	Msa1413260	0.823913	1.072266e-53	-8.615850e-47
Msa0881290	Msa1413260	0.814755	1.310575e-51	-8.615850e-47
Msa0888810	Msa1413260	0.828529	8.547906e-55	-8.615850e-47
Msa0895390	Msa1413260	0.805001	1.648107e-49	-8.615850e-47
Msa0943170	Msa1413260	0.820541	6.494848e-53	-8.615850e-47
Msa0945480	Msa1413260	0.811893	5.575683e-51	-8.615850e-47
Msa0963020	Msa1413260	0.811681	6.198591e-51	-8.615850e-47
Msa0966270	Msa1413260	0.812322	4.494145e-51	-8.615850e-47
Msa0968440	Msa1413260	0.800494	1.403532e-48	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1413260	MtrunA17_Chr8g0383391	90.345	145	0	1	1	145	1	131	4.89e-91	259

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1413260	AT1G20580.1	76.027	146	19	3	1	145	1	131	1.33e-67	201
Msa1413260	AT1G76300.1	70.345	145	26	3	1	145	1	128	1.21e-64	193

Find 58 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGCATCACTCTAAAATCTTT+TGG	0.274319	tig0024019:+42083	None:intergenic
GCTGGCCGTGGAGCTCCGCC+TGG	0.291361	tig0024019:-42459	Msa1413260:CDS
ATACTAATGTGACAGGTTTA+TGG	0.302035	tig0024019:-42824	Msa1413260:intron
TGATAGAAAGAAATTTGAAT+TGG	0.341162	tig0024019:-42341	Msa1413260:three_prime_UTR
AAAGAAGATGAGTCGTAGTT+TGG	0.344374	tig0024019:-44215	Msa1413260:exon
CTGATGTAGCCCGTCTATCT+TGG	0.348458	tig0024019:-43200	Msa1413260:intron
GCCTGTATTGTGTGCTTGGC+TGG	0.354352	tig0024019:-42272	Msa1413260:three_prime_UTR
TGATTGAGTGTGAGGATAAC+TGG	0.357866	tig0024019:-44108	Msa1413260:CDS
GAGTCGTAGTTTGGGAATTC+CGG	0.364238	tig0024019:-44206	Msa1413260:CDS
CCGTGGAGCTCCGCCTGGGA+GGG	0.368506	tig0024019:-42454	Msa1413260:CDS
CGTGGAGCTCCGCCTGGGAG+GGG	0.398677	tig0024019:-42453	Msa1413260:CDS
AGTTTGACAGCCCTCAAAAC+TGG	0.411974	tig0024019:-42173	Msa1413260:three_prime_UTR
TAGGCTCAAGCTGCTGGCCG+TGG	0.412883	tig0024019:-42471	Msa1413260:CDS
AAGAAGATGAGTCGTAGTTT+GGG	0.420399	tig0024019:-44214	Msa1413260:exon
GCCGTGGAGCTCCGCCTGGG+AGG	0.444968	tig0024019:-42455	Msa1413260:CDS
CCTGTGTAGGCTCAAGCTGC+TGG	0.451467	tig0024019:-42477	Msa1413260:intron
CTTGAGCATGTATTTATTCG+AGG	0.458500	tig0024019:-42960	Msa1413260:CDS
GCCTCGTGGAGGAGCTTCAC+CGG	0.468346	tig0024019:+44187	None:intergenic
CTGGCCGTGGAGCTCCGCCT+GGG	0.468800	tig0024019:-42458	Msa1413260:CDS
TTATTCGAGGTAGCAAAGTC+AGG	0.472481	tig0024019:-42947	Msa1413260:intron
TGCATCTAAACGCTTGAACA+TGG	0.482856	tig0024019:+42774	None:intergenic
GGAGCGTTCTTCAGCATGTC+GGG	0.484052	tig0024019:+42796	None:intergenic
GCATCGCTTGGTGTTGGTAG+AGG	0.487013	tig0024019:-42648	Msa1413260:CDS
ACCAGCCAAGCACACAATAC+AGG	0.498191	tig0024019:+42271	None:intergenic
AAGCTCCTCCACGAGGCCTC+CGG	0.500533	tig0024019:-44181	Msa1413260:CDS
AAGGGCAAGGGTGCATCGCT+TGG	0.512282	tig0024019:-42660	Msa1413260:CDS
ATGTAGCCCGTCTATCTTGG+TGG	0.516622	tig0024019:-43197	Msa1413260:intron
CCCTCCCAGGCGGAGCTCCA+CGG	0.537318	tig0024019:+42454	None:intergenic
AAGGGTGCATCGCTTGGTGT+TGG	0.544000	tig0024019:-42654	Msa1413260:CDS
AAGCATCACTTACACTGCTA+AGG	0.553810	tig0024019:-44071	Msa1413260:intron
GCGTTTAGATGCAAGAATCA+AGG	0.557683	tig0024019:-42764	Msa1413260:intron
CTGAATATCTTGAAGGGCAA+GGG	0.558094	tig0024019:-42672	Msa1413260:intron
AATGATGATCACCTCCTCAC+TGG	0.558350	tig0024019:+42423	None:intergenic
CTCCACCGTGACGACGTGGC+CGG	0.561230	tig0024019:+44162	None:intergenic
GCATCTAAACGCTTGAACAT+GGG	0.565911	tig0024019:+42775	None:intergenic
ACTGGTGGTACACCCCTCCC+AGG	0.566465	tig0024019:+42441	None:intergenic
AGCAGTTGCAATGCGAGCAA+AGG	0.568696	tig0024019:-42622	Msa1413260:intron
GGGAGCGTTCTTCAGCATGT+CGG	0.573337	tig0024019:+42795	None:intergenic
CCCTCAAAACTGGTTTAAGA+CGG	0.578521	tig0024019:-42163	Msa1413260:three_prime_UTR
TGTAAGTGATGCTTTCGAGT+TGG	0.586493	tig0024019:+44080	None:intergenic
GGCCTCCGGCCACGTCGTCA+CGG	0.591892	tig0024019:-44167	Msa1413260:CDS
CGACGTGGCCGGAGGCCTCG+TGG	0.593417	tig0024019:+44173	None:intergenic
CACCGTGACGACGTGGCCGG+AGG	0.597159	tig0024019:+44165	None:intergenic
ATTCACAGACTACTTCTCAC+TGG	0.604652	tig0024019:-42307	Msa1413260:three_prime_UTR
AGGCAACATGATTGAGTGTG+AGG	0.608133	tig0024019:-44116	Msa1413260:CDS
TGTAGCCCGTCTATCTTGGT+GGG	0.618588	tig0024019:-43196	Msa1413260:intron
GTCACGGTGGAGCTCAAGAG+CGG	0.621698	tig0024019:-44151	Msa1413260:CDS
GGGGTGTACCACCAGTGAGG+AGG	0.633056	tig0024019:-42434	Msa1413260:CDS
AGTTATTATGAGTTTCGTGA+GGG	0.633783	tig0024019:-42197	Msa1413260:three_prime_UTR
AAGTTATTATGAGTTTCGTG+AGG	0.640457	tig0024019:-42198	Msa1413260:three_prime_UTR
GGAGGGGTGTACCACCAGTG+AGG	0.654099	tig0024019:-42437	Msa1413260:CDS
GATGATCACCTCCTCACTGG+TGG	0.658723	tig0024019:+42426	None:intergenic
TGAGCTCCACCGTGACGACG+TGG	0.674804	tig0024019:+44158	None:intergenic
CGTGGCCGGAGGCCTCGTGG+AGG	0.675507	tig0024019:+44176	None:intergenic
AAGAGCGGCGAACTCTACAG+AGG	0.686815	tig0024019:-44136	Msa1413260:CDS
TCCGGTGAAGCTCCTCCACG+AGG	0.694574	tig0024019:-44188	Msa1413260:CDS
GGTGGTACACCCCTCCCAGG+CGG	0.697960	tig0024019:+42444	None:intergenic
CTCCGGCCACGTCGTCACGG+TGG	0.732137	tig0024019:-44164	Msa1413260:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTAATCACTTTTTAATAAGA+AGG	+	tig0024019:43656-43675	None:intergenic	15.0%
!!	AATAAACTAGGAATAAAAAA+AGG	+	tig0024019:43802-43821	None:intergenic	15.0%
!!	TAGATGAAAATAAATAAACT+AGG	+	tig0024019:43814-43833	None:intergenic	15.0%
!!!	CTTTTAAAATTAGTATATGA+CGG	-	tig0024019:44168-44187	Msa1413260:CDS	15.0%
!!!	TTAATCACTTTTTAATAAGA+AGG	+	tig0024019:43656-43675	None:intergenic	15.0%
!!	AATAAACTAGGAATAAAAAA+AGG	+	tig0024019:43802-43821	None:intergenic	15.0%
!!	TAGATGAAAATAAATAAACT+AGG	+	tig0024019:43814-43833	None:intergenic	15.0%
!!!	CTTTTAAAATTAGTATATGA+CGG	-	tig0024019:44168-44187	Msa1413260:CDS	15.0%
!!!	CTTTCTAGTATTAACTAATT+TGG	-	tig0024019:42539-42558	Msa1413260:intron	20.0%
!!!	TACTTTTTTCTCTAATGATA+TGG	+	tig0024019:42577-42596	None:intergenic	20.0%
!!	ATATCATTAGAGAAAAAAGT+AGG	-	tig0024019:42576-42595	Msa1413260:intron	20.0%
!!	TATCATTAGAGAAAAAAGTA+GGG	-	tig0024019:42577-42596	Msa1413260:intron	20.0%
!!!	ACAAGTAATTTTGTTAAAGA+GGG	-	tig0024019:42642-42661	Msa1413260:CDS	20.0%
!!	GAAAAAAAAAGTTACAAAAC+AGG	+	tig0024019:42758-42777	None:intergenic	20.0%
!!!	CATGTCAATTCTTATTTATA+AGG	-	tig0024019:42981-43000	Msa1413260:CDS	20.0%
!!	AATAAATTAACAGTAAGACA+TGG	-	tig0024019:43159-43178	Msa1413260:intron	20.0%
!!	AAGAAATTAACAAGTTTCAT+AGG	+	tig0024019:43294-43313	None:intergenic	20.0%
!!!	TAACGTAATTATTTCAAGTA+AGG	-	tig0024019:43500-43519	Msa1413260:intron	20.0%
!!	GTGATTAATTACTCTATATT+TGG	-	tig0024019:43668-43687	Msa1413260:intron	20.0%
!!	TGATAGAAAGAAATTTGAAT+TGG	-	tig0024019:44051-44070	Msa1413260:intron	20.0%
!!!	CTAGTTATTTTGTAATTAGA+AGG	-	tig0024019:44279-44298	Msa1413260:five_prime_UTR	20.0%
!!!	CTTTCTAGTATTAACTAATT+TGG	-	tig0024019:42539-42558	Msa1413260:intron	20.0%
!!!	TACTTTTTTCTCTAATGATA+TGG	+	tig0024019:42577-42596	None:intergenic	20.0%
!!	ATATCATTAGAGAAAAAAGT+AGG	-	tig0024019:42576-42595	Msa1413260:intron	20.0%
!!	TATCATTAGAGAAAAAAGTA+GGG	-	tig0024019:42577-42596	Msa1413260:intron	20.0%
!!!	ACAAGTAATTTTGTTAAAGA+GGG	-	tig0024019:42642-42661	Msa1413260:CDS	20.0%
!!	GAAAAAAAAAGTTACAAAAC+AGG	+	tig0024019:42758-42777	None:intergenic	20.0%
!!!	CATGTCAATTCTTATTTATA+AGG	-	tig0024019:42981-43000	Msa1413260:CDS	20.0%
!!	AATAAATTAACAGTAAGACA+TGG	-	tig0024019:43159-43178	Msa1413260:intron	20.0%
!!	AAGAAATTAACAAGTTTCAT+AGG	+	tig0024019:43294-43313	None:intergenic	20.0%
!!!	TAACGTAATTATTTCAAGTA+AGG	-	tig0024019:43500-43519	Msa1413260:intron	20.0%
!!	GTGATTAATTACTCTATATT+TGG	-	tig0024019:43668-43687	Msa1413260:intron	20.0%
!!	TGATAGAAAGAAATTTGAAT+TGG	-	tig0024019:44051-44070	Msa1413260:intron	20.0%
!!!	CTAGTTATTTTGTAATTAGA+AGG	-	tig0024019:44279-44298	Msa1413260:five_prime_UTR	20.0%
!	AAAAAACTGTGTATTAGAAG+AGG	-	tig0024019:42109-42128	Msa1413260:three_prime_UTR	25.0%
!	TTGAAAAAGATCGTGAATTA+GGG	-	tig0024019:42137-42156	Msa1413260:three_prime_UTR	25.0%
!!!	TTTTTTGTAGAATTGAGTTG+TGG	-	tig0024019:42400-42419	Msa1413260:three_prime_UTR	25.0%
!!	TAGGGTTTATGTTGTATTTT+AGG	-	tig0024019:42482-42501	Msa1413260:intron	25.0%
!!	AGGGTTTATGTTGTATTTTA+GGG	-	tig0024019:42483-42502	Msa1413260:intron	25.0%
!!	AGAAAAAAGTAGGGATTTTT+GGG	-	tig0024019:42586-42605	Msa1413260:intron	25.0%
!!	CAAAATTACTTGTGCTTTTA+TGG	+	tig0024019:42635-42654	None:intergenic	25.0%
!!	CACAAGTAATTTTGTTAAAG+AGG	-	tig0024019:42641-42660	Msa1413260:CDS	25.0%
!!!	ATCAAAAGCTTTAAGCTATA+TGG	+	tig0024019:42852-42871	None:intergenic	25.0%
!!	TATAGCTTAAAGCTTTTGAT+AGG	-	tig0024019:42852-42871	Msa1413260:intron	25.0%
!!!	TTACTTTTTCCAAGATGAAA+GGG	+	tig0024019:42938-42957	None:intergenic	25.0%
!!!	TTTACTTTTTCCAAGATGAA+AGG	+	tig0024019:42939-42958	None:intergenic	25.0%
!!!	AAATCTCTCTTAATGGATTA+AGG	+	tig0024019:43108-43127	None:intergenic	25.0%
!	TTAATCCATTAAGAGAGATT+TGG	-	tig0024019:43107-43126	Msa1413260:intron	25.0%
!	TAATCCATTAAGAGAGATTT+GGG	-	tig0024019:43108-43127	Msa1413260:intron	25.0%
!	TCTACAATAGTTGCTAATAA+TGG	-	tig0024019:43376-43395	Msa1413260:intron	25.0%
!!	TTTTTGTCTGAATATCTTGA+AGG	-	tig0024019:43713-43732	Msa1413260:intron	25.0%
!!	TTTTGTCTGAATATCTTGAA+GGG	-	tig0024019:43714-43733	Msa1413260:intron	25.0%
!!!	TATTTATTTTCATCTAGCCT+TGG	-	tig0024019:43818-43837	Msa1413260:intron	25.0%
!!!	ATTTATTTTCATCTAGCCTT+GGG	-	tig0024019:43819-43838	Msa1413260:intron	25.0%
!	AAAAAACTGTGTATTAGAAG+AGG	-	tig0024019:42109-42128	Msa1413260:three_prime_UTR	25.0%
!	TTGAAAAAGATCGTGAATTA+GGG	-	tig0024019:42137-42156	Msa1413260:three_prime_UTR	25.0%
!!!	TTTTTTGTAGAATTGAGTTG+TGG	-	tig0024019:42400-42419	Msa1413260:three_prime_UTR	25.0%
!!	TAGGGTTTATGTTGTATTTT+AGG	-	tig0024019:42482-42501	Msa1413260:intron	25.0%
!!	AGGGTTTATGTTGTATTTTA+GGG	-	tig0024019:42483-42502	Msa1413260:intron	25.0%
!!	AGAAAAAAGTAGGGATTTTT+GGG	-	tig0024019:42586-42605	Msa1413260:intron	25.0%
!!	CAAAATTACTTGTGCTTTTA+TGG	+	tig0024019:42635-42654	None:intergenic	25.0%
!!	CACAAGTAATTTTGTTAAAG+AGG	-	tig0024019:42641-42660	Msa1413260:CDS	25.0%
!!!	ATCAAAAGCTTTAAGCTATA+TGG	+	tig0024019:42852-42871	None:intergenic	25.0%
!!	TATAGCTTAAAGCTTTTGAT+AGG	-	tig0024019:42852-42871	Msa1413260:intron	25.0%
!!!	TTACTTTTTCCAAGATGAAA+GGG	+	tig0024019:42938-42957	None:intergenic	25.0%
!!!	TTTACTTTTTCCAAGATGAA+AGG	+	tig0024019:42939-42958	None:intergenic	25.0%
!!!	AAATCTCTCTTAATGGATTA+AGG	+	tig0024019:43108-43127	None:intergenic	25.0%
!	TTAATCCATTAAGAGAGATT+TGG	-	tig0024019:43107-43126	Msa1413260:intron	25.0%
!	TAATCCATTAAGAGAGATTT+GGG	-	tig0024019:43108-43127	Msa1413260:intron	25.0%
!	TCTACAATAGTTGCTAATAA+TGG	-	tig0024019:43376-43395	Msa1413260:intron	25.0%
!!	TTTTTGTCTGAATATCTTGA+AGG	-	tig0024019:43713-43732	Msa1413260:intron	25.0%
!!	TTTTGTCTGAATATCTTGAA+GGG	-	tig0024019:43714-43733	Msa1413260:intron	25.0%
!!!	TATTTATTTTCATCTAGCCT+TGG	-	tig0024019:43818-43837	Msa1413260:intron	25.0%
!!!	ATTTATTTTCATCTAGCCTT+GGG	-	tig0024019:43819-43838	Msa1413260:intron	25.0%
	GTTGAAAAAGATCGTGAATT+AGG	-	tig0024019:42136-42155	Msa1413260:three_prime_UTR	30.0%
	TAGGGATCTTTGAATACTTA+TGG	-	tig0024019:42501-42520	Msa1413260:intron	30.0%
!!!	ATACTTATGGTTTTGAACAC+TGG	-	tig0024019:42514-42533	Msa1413260:intron	30.0%
!	GAGAAAAAAGTAGGGATTTT+TGG	-	tig0024019:42585-42604	Msa1413260:intron	30.0%
	TAAATCGACCCATAAAAGTT+AGG	-	tig0024019:42671-42690	Msa1413260:intron	30.0%
!	AAACAGAGCCTAACTTTTAT+GGG	+	tig0024019:42682-42701	None:intergenic	30.0%
!!!	GTTACAAAACAGGTCTTTTT+TGG	+	tig0024019:42748-42767	None:intergenic	30.0%
	TATCAAACTAAGCAATAAGC+TGG	+	tig0024019:42815-42834	None:intergenic	30.0%
!!!	TACTTTTTCCAAGATGAAAG+GGG	+	tig0024019:42937-42956	None:intergenic	30.0%
	TGGATTGAATTTGTAGTGTT+TGG	+	tig0024019:43027-43046	None:intergenic	30.0%
!!	TAATGGATTAAGGCTTTGTT+TGG	+	tig0024019:43098-43117	None:intergenic	30.0%
!	TGTATATCGCATTTTCTGTA+AGG	-	tig0024019:43529-43548	Msa1413260:intron	30.0%
	ATACTAATGTGACAGGTTTA+TGG	-	tig0024019:43568-43587	Msa1413260:intron	30.0%
!	ATTGAACAAACATTTTCCCA+AGG	+	tig0024019:43838-43857	None:intergenic	30.0%
	TTACACCACATTTGTAACAA+CGG	+	tig0024019:43883-43902	None:intergenic	30.0%
!	AATCTCTATTTTCTGTCTGT+TGG	-	tig0024019:43997-44016	Msa1413260:intron	30.0%
	AAGTTATTATGAGTTTCGTG+AGG	-	tig0024019:44194-44213	Msa1413260:CDS	30.0%
	AGTTATTATGAGTTTCGTGA+GGG	-	tig0024019:44195-44214	Msa1413260:CDS	30.0%
	GTTGAAAAAGATCGTGAATT+AGG	-	tig0024019:42136-42155	Msa1413260:three_prime_UTR	30.0%
	TAGGGATCTTTGAATACTTA+TGG	-	tig0024019:42501-42520	Msa1413260:intron	30.0%
!!!	ATACTTATGGTTTTGAACAC+TGG	-	tig0024019:42514-42533	Msa1413260:intron	30.0%
!	GAGAAAAAAGTAGGGATTTT+TGG	-	tig0024019:42585-42604	Msa1413260:intron	30.0%
	TAAATCGACCCATAAAAGTT+AGG	-	tig0024019:42671-42690	Msa1413260:intron	30.0%
!	AAACAGAGCCTAACTTTTAT+GGG	+	tig0024019:42682-42701	None:intergenic	30.0%
!!!	GTTACAAAACAGGTCTTTTT+TGG	+	tig0024019:42748-42767	None:intergenic	30.0%
	TATCAAACTAAGCAATAAGC+TGG	+	tig0024019:42815-42834	None:intergenic	30.0%
!!!	TACTTTTTCCAAGATGAAAG+GGG	+	tig0024019:42937-42956	None:intergenic	30.0%
	TGGATTGAATTTGTAGTGTT+TGG	+	tig0024019:43027-43046	None:intergenic	30.0%
!!	TAATGGATTAAGGCTTTGTT+TGG	+	tig0024019:43098-43117	None:intergenic	30.0%
!	TGTATATCGCATTTTCTGTA+AGG	-	tig0024019:43529-43548	Msa1413260:intron	30.0%
	ATACTAATGTGACAGGTTTA+TGG	-	tig0024019:43568-43587	Msa1413260:intron	30.0%
!	ATTGAACAAACATTTTCCCA+AGG	+	tig0024019:43838-43857	None:intergenic	30.0%
	TTACACCACATTTGTAACAA+CGG	+	tig0024019:43883-43902	None:intergenic	30.0%
!	AATCTCTATTTTCTGTCTGT+TGG	-	tig0024019:43997-44016	Msa1413260:intron	30.0%
	AAGTTATTATGAGTTTCGTG+AGG	-	tig0024019:44194-44213	Msa1413260:CDS	30.0%
	AGTTATTATGAGTTTCGTGA+GGG	-	tig0024019:44195-44214	Msa1413260:CDS	30.0%
	AAAGAAGATGAGTCGTAGTT+TGG	-	tig0024019:42177-42196	Msa1413260:three_prime_UTR	35.0%
	AAGAAGATGAGTCGTAGTTT+GGG	-	tig0024019:42178-42197	Msa1413260:three_prime_UTR	35.0%
	CGTTGTGATATTCGCAAATT+TGG	-	tig0024019:42442-42461	Msa1413260:CDS	35.0%
!!	AAAAAGTAGGGATTTTTGGG+TGG	-	tig0024019:42589-42608	Msa1413260:intron	35.0%
!	CAAACAGAGCCTAACTTTTA+TGG	+	tig0024019:42683-42702	None:intergenic	35.0%
	CATAAAAGTTAGGCTCTGTT+TGG	-	tig0024019:42681-42700	Msa1413260:intron	35.0%
	ACAACCCAAATCTCTCTTAA+TGG	+	tig0024019:43115-43134	None:intergenic	35.0%
!!	TAAGAGAGATTTGGGTTGTA+TGG	-	tig0024019:43116-43135	Msa1413260:intron	35.0%
	GAAAAAGTCTTTGGTTGTTG+TGG	-	tig0024019:43218-43237	Msa1413260:intron	35.0%
	AGTTTCATAGGAGAGAAAGA+TGG	+	tig0024019:43282-43301	None:intergenic	35.0%
	ATAATGGCTAAATCTTCTGC+AGG	-	tig0024019:43392-43411	Msa1413260:intron	35.0%
	CTTGAGCATGTATTTATTCG+AGG	-	tig0024019:43432-43451	Msa1413260:intron	35.0%
	TGAAGTGATACTAATGTGAC+AGG	-	tig0024019:43561-43580	Msa1413260:intron	35.0%
!!	TTCAATGACTTGCTAGTTGA+AGG	-	tig0024019:43852-43871	Msa1413260:intron	35.0%
!	GTAGAATTTTGTCTTAGGTG+TGG	-	tig0024019:44142-44161	Msa1413260:CDS	35.0%
	AAAGAAGATGAGTCGTAGTT+TGG	-	tig0024019:42177-42196	Msa1413260:three_prime_UTR	35.0%
	AAGAAGATGAGTCGTAGTTT+GGG	-	tig0024019:42178-42197	Msa1413260:three_prime_UTR	35.0%
	CGTTGTGATATTCGCAAATT+TGG	-	tig0024019:42442-42461	Msa1413260:CDS	35.0%
!!	AAAAAGTAGGGATTTTTGGG+TGG	-	tig0024019:42589-42608	Msa1413260:intron	35.0%
!	CAAACAGAGCCTAACTTTTA+TGG	+	tig0024019:42683-42702	None:intergenic	35.0%
	CATAAAAGTTAGGCTCTGTT+TGG	-	tig0024019:42681-42700	Msa1413260:intron	35.0%
	ACAACCCAAATCTCTCTTAA+TGG	+	tig0024019:43115-43134	None:intergenic	35.0%
!!	TAAGAGAGATTTGGGTTGTA+TGG	-	tig0024019:43116-43135	Msa1413260:intron	35.0%
	GAAAAAGTCTTTGGTTGTTG+TGG	-	tig0024019:43218-43237	Msa1413260:intron	35.0%
	AGTTTCATAGGAGAGAAAGA+TGG	+	tig0024019:43282-43301	None:intergenic	35.0%
	ATAATGGCTAAATCTTCTGC+AGG	-	tig0024019:43392-43411	Msa1413260:intron	35.0%
	CTTGAGCATGTATTTATTCG+AGG	-	tig0024019:43432-43451	Msa1413260:intron	35.0%
	TGAAGTGATACTAATGTGAC+AGG	-	tig0024019:43561-43580	Msa1413260:intron	35.0%
!!	TTCAATGACTTGCTAGTTGA+AGG	-	tig0024019:43852-43871	Msa1413260:intron	35.0%
!	GTAGAATTTTGTCTTAGGTG+TGG	-	tig0024019:44142-44161	Msa1413260:CDS	35.0%
	TGATTGAGTGTGAGGATAAC+TGG	-	tig0024019:42284-42303	Msa1413260:three_prime_UTR	40.0%
!	TGTAAGTGATGCTTTCGAGT+TGG	+	tig0024019:42315-42334	None:intergenic	40.0%
	AAGCATCACTTACACTGCTA+AGG	-	tig0024019:42321-42340	Msa1413260:three_prime_UTR	40.0%
	ATTCGCAAATTTGGCAGATG+TGG	-	tig0024019:42451-42470	Msa1413260:CDS	40.0%
!!!	TAGGGATTTTTGGGTGGTTT+CGG	-	tig0024019:42595-42614	Msa1413260:intron	40.0%
	CAAAGTTACCCCTTTCATCT+TGG	-	tig0024019:42926-42945	Msa1413260:intron	40.0%
	CTAGCTTATAGCAGATAAGC+TGG	+	tig0024019:43050-43069	None:intergenic	40.0%
!	TTTTTCCCACCAAGATAGAC+GGG	+	tig0024019:43204-43223	None:intergenic	40.0%
!	CTTTTTCCCACCAAGATAGA+CGG	+	tig0024019:43205-43224	None:intergenic	40.0%
	TCTTGGTGGGAAAAAGTCTT+TGG	-	tig0024019:43209-43228	Msa1413260:intron	40.0%
	TTATTCGAGGTAGCAAAGTC+AGG	-	tig0024019:43445-43464	Msa1413260:intron	40.0%
	GCATCTAAACGCTTGAACAT+GGG	+	tig0024019:43620-43639	None:intergenic	40.0%
	TGCATCTAAACGCTTGAACA+TGG	+	tig0024019:43621-43640	None:intergenic	40.0%
	GCGTTTAGATGCAAGAATCA+AGG	-	tig0024019:43628-43647	Msa1413260:intron	40.0%
	TCTGAATATCTTGAAGGGCA+AGG	-	tig0024019:43719-43738	Msa1413260:intron	40.0%
	CTGAATATCTTGAAGGGCAA+GGG	-	tig0024019:43720-43739	Msa1413260:intron	40.0%
	ACCTACCGTTGTTACAAATG+TGG	-	tig0024019:43875-43894	Msa1413260:intron	40.0%
	ACCACATTTGTAACAACGGT+AGG	+	tig0024019:43879-43898	None:intergenic	40.0%
	ACCTCAAATGTTTCCTGTGT+AGG	-	tig0024019:43902-43921	Msa1413260:intron	40.0%
	ATTCACAGACTACTTCTCAC+TGG	-	tig0024019:44085-44104	Msa1413260:CDS	40.0%
!	TTTTGCCTGTATTGTGTGCT+TGG	-	tig0024019:44116-44135	Msa1413260:CDS	40.0%
!	GGCTGGTAGAATTTTGTCTT+AGG	-	tig0024019:44137-44156	Msa1413260:CDS	40.0%
!!	CCGTCTTAAACCAGTTTTGA+GGG	+	tig0024019:44232-44251	None:intergenic	40.0%
!	CCCTCAAAACTGGTTTAAGA+CGG	-	tig0024019:44229-44248	Msa1413260:exon	40.0%
!	TCCGTCTTAAACCAGTTTTG+AGG	+	tig0024019:44233-44252	None:intergenic	40.0%
	TGATTGAGTGTGAGGATAAC+TGG	-	tig0024019:42284-42303	Msa1413260:three_prime_UTR	40.0%
!	TGTAAGTGATGCTTTCGAGT+TGG	+	tig0024019:42315-42334	None:intergenic	40.0%
	AAGCATCACTTACACTGCTA+AGG	-	tig0024019:42321-42340	Msa1413260:three_prime_UTR	40.0%
	ATTCGCAAATTTGGCAGATG+TGG	-	tig0024019:42451-42470	Msa1413260:CDS	40.0%
!!!	TAGGGATTTTTGGGTGGTTT+CGG	-	tig0024019:42595-42614	Msa1413260:intron	40.0%
	CAAAGTTACCCCTTTCATCT+TGG	-	tig0024019:42926-42945	Msa1413260:intron	40.0%
	CTAGCTTATAGCAGATAAGC+TGG	+	tig0024019:43050-43069	None:intergenic	40.0%
!	TTTTTCCCACCAAGATAGAC+GGG	+	tig0024019:43204-43223	None:intergenic	40.0%
!	CTTTTTCCCACCAAGATAGA+CGG	+	tig0024019:43205-43224	None:intergenic	40.0%
	TCTTGGTGGGAAAAAGTCTT+TGG	-	tig0024019:43209-43228	Msa1413260:intron	40.0%
	TTATTCGAGGTAGCAAAGTC+AGG	-	tig0024019:43445-43464	Msa1413260:intron	40.0%
	GCATCTAAACGCTTGAACAT+GGG	+	tig0024019:43620-43639	None:intergenic	40.0%
	TGCATCTAAACGCTTGAACA+TGG	+	tig0024019:43621-43640	None:intergenic	40.0%
	GCGTTTAGATGCAAGAATCA+AGG	-	tig0024019:43628-43647	Msa1413260:intron	40.0%
	TCTGAATATCTTGAAGGGCA+AGG	-	tig0024019:43719-43738	Msa1413260:intron	40.0%
	CTGAATATCTTGAAGGGCAA+GGG	-	tig0024019:43720-43739	Msa1413260:intron	40.0%
	ACCTACCGTTGTTACAAATG+TGG	-	tig0024019:43875-43894	Msa1413260:intron	40.0%
	ACCACATTTGTAACAACGGT+AGG	+	tig0024019:43879-43898	None:intergenic	40.0%
	ACCTCAAATGTTTCCTGTGT+AGG	-	tig0024019:43902-43921	Msa1413260:intron	40.0%
	ATTCACAGACTACTTCTCAC+TGG	-	tig0024019:44085-44104	Msa1413260:CDS	40.0%
!	TTTTGCCTGTATTGTGTGCT+TGG	-	tig0024019:44116-44135	Msa1413260:CDS	40.0%
!	GGCTGGTAGAATTTTGTCTT+AGG	-	tig0024019:44137-44156	Msa1413260:CDS	40.0%
!!	CCGTCTTAAACCAGTTTTGA+GGG	+	tig0024019:44232-44251	None:intergenic	40.0%
!	CCCTCAAAACTGGTTTAAGA+CGG	-	tig0024019:44229-44248	Msa1413260:exon	40.0%
!	TCCGTCTTAAACCAGTTTTG+AGG	+	tig0024019:44233-44252	None:intergenic	40.0%
	GAGTCGTAGTTTGGGAATTC+CGG	-	tig0024019:42186-42205	Msa1413260:three_prime_UTR	45.0%
	AGGCAACATGATTGAGTGTG+AGG	-	tig0024019:42276-42295	Msa1413260:three_prime_UTR	45.0%
	CAAATTTGGCAGATGTGGAG+CGG	-	tig0024019:42456-42475	Msa1413260:CDS	45.0%
	AAATTTGGCAGATGTGGAGC+GGG	-	tig0024019:42457-42476	Msa1413260:CDS	45.0%
	GCTTATAGCAGATAAGCTGG+TGG	+	tig0024019:43047-43066	None:intergenic	45.0%
	TGGCTAAATCTTCTGCAGGA+TGG	-	tig0024019:43396-43415	Msa1413260:intron	45.0%
	GCCTACACAGGAAACATTTG+AGG	+	tig0024019:43906-43925	None:intergenic	45.0%
	AATGATGATCACCTCCTCAC+TGG	+	tig0024019:43972-43991	None:intergenic	45.0%
	AGTTTGACAGCCCTCAAAAC+TGG	-	tig0024019:44219-44238	Msa1413260:exon	45.0%
	GAGTCGTAGTTTGGGAATTC+CGG	-	tig0024019:42186-42205	Msa1413260:three_prime_UTR	45.0%
	AGGCAACATGATTGAGTGTG+AGG	-	tig0024019:42276-42295	Msa1413260:three_prime_UTR	45.0%
	CAAATTTGGCAGATGTGGAG+CGG	-	tig0024019:42456-42475	Msa1413260:CDS	45.0%
	AAATTTGGCAGATGTGGAGC+GGG	-	tig0024019:42457-42476	Msa1413260:CDS	45.0%
	GCTTATAGCAGATAAGCTGG+TGG	+	tig0024019:43047-43066	None:intergenic	45.0%
	TGGCTAAATCTTCTGCAGGA+TGG	-	tig0024019:43396-43415	Msa1413260:intron	45.0%
	GCCTACACAGGAAACATTTG+AGG	+	tig0024019:43906-43925	None:intergenic	45.0%
	AATGATGATCACCTCCTCAC+TGG	+	tig0024019:43972-43991	None:intergenic	45.0%
	AGTTTGACAGCCCTCAAAAC+TGG	-	tig0024019:44219-44238	Msa1413260:exon	45.0%
	AACGATAAACCCAGCCACGA+CGG	+	tig0024019:42426-42445	None:intergenic	50.0%
	CTGATGTAGCCCGTCTATCT+TGG	-	tig0024019:43192-43211	Msa1413260:CDS	50.0%
	ATGTAGCCCGTCTATCTTGG+TGG	-	tig0024019:43195-43214	Msa1413260:intron	50.0%
	TGTAGCCCGTCTATCTTGGT+GGG	-	tig0024019:43196-43215	Msa1413260:intron	50.0%
	AGCAGTTGCAATGCGAGCAA+AGG	-	tig0024019:43770-43789	Msa1413260:intron	50.0%
	ACCAGCCAAGCACACAATAC+AGG	+	tig0024019:44124-44143	None:intergenic	50.0%
	AACGATAAACCCAGCCACGA+CGG	+	tig0024019:42426-42445	None:intergenic	50.0%
	CTGATGTAGCCCGTCTATCT+TGG	-	tig0024019:43192-43211	Msa1413260:CDS	50.0%
	ATGTAGCCCGTCTATCTTGG+TGG	-	tig0024019:43195-43214	Msa1413260:intron	50.0%
	TGTAGCCCGTCTATCTTGGT+GGG	-	tig0024019:43196-43215	Msa1413260:intron	50.0%
	AGCAGTTGCAATGCGAGCAA+AGG	-	tig0024019:43770-43789	Msa1413260:intron	50.0%
	ACCAGCCAAGCACACAATAC+AGG	+	tig0024019:44124-44143	None:intergenic	50.0%
	AAGAGCGGCGAACTCTACAG+AGG	-	tig0024019:42256-42275	Msa1413260:three_prime_UTR	55.0%
!	GAATTGAGTTGTGGCCGTCG+TGG	-	tig0024019:42409-42428	Msa1413260:three_prime_UTR	55.0%
	GCAGATGTGGAGCGGGATTA+GGG	-	tig0024019:42464-42483	Msa1413260:CDS	55.0%
!	GGAGCGTTCTTCAGCATGTC+GGG	+	tig0024019:43599-43618	None:intergenic	55.0%
!!	GGGAGCGTTCTTCAGCATGT+CGG	+	tig0024019:43600-43619	None:intergenic	55.0%
!!	AAGGGTGCATCGCTTGGTGT+TGG	-	tig0024019:43738-43757	Msa1413260:intron	55.0%
!!	GCATCGCTTGGTGTTGGTAG+AGG	-	tig0024019:43744-43763	Msa1413260:intron	55.0%
	GATGATCACCTCCTCACTGG+TGG	+	tig0024019:43969-43988	None:intergenic	55.0%
	GCCTGTATTGTGTGCTTGGC+TGG	-	tig0024019:44120-44139	Msa1413260:CDS	55.0%
	AAGAGCGGCGAACTCTACAG+AGG	-	tig0024019:42256-42275	Msa1413260:three_prime_UTR	55.0%
!	GAATTGAGTTGTGGCCGTCG+TGG	-	tig0024019:42409-42428	Msa1413260:three_prime_UTR	55.0%
	GCAGATGTGGAGCGGGATTA+GGG	-	tig0024019:42464-42483	Msa1413260:CDS	55.0%
!	GGAGCGTTCTTCAGCATGTC+GGG	+	tig0024019:43599-43618	None:intergenic	55.0%
!!	GGGAGCGTTCTTCAGCATGT+CGG	+	tig0024019:43600-43619	None:intergenic	55.0%
!!	AAGGGTGCATCGCTTGGTGT+TGG	-	tig0024019:43738-43757	Msa1413260:intron	55.0%
!!	GCATCGCTTGGTGTTGGTAG+AGG	-	tig0024019:43744-43763	Msa1413260:intron	55.0%
	GATGATCACCTCCTCACTGG+TGG	+	tig0024019:43969-43988	None:intergenic	55.0%
	GCCTGTATTGTGTGCTTGGC+TGG	-	tig0024019:44120-44139	Msa1413260:CDS	55.0%
	GTCACGGTGGAGCTCAAGAG+CGG	-	tig0024019:42241-42260	Msa1413260:three_prime_UTR	60.0%
	GGCAGATGTGGAGCGGGATT+AGG	-	tig0024019:42463-42482	Msa1413260:CDS	60.0%
!	AAGGGCAAGGGTGCATCGCT+TGG	-	tig0024019:43732-43751	Msa1413260:intron	60.0%
	CCAGCAGCTTGAGCCTACAC+AGG	+	tig0024019:43918-43937	None:intergenic	60.0%
	CCTGTGTAGGCTCAAGCTGC+TGG	-	tig0024019:43915-43934	Msa1413260:intron	60.0%
	GTCACGGTGGAGCTCAAGAG+CGG	-	tig0024019:42241-42260	Msa1413260:three_prime_UTR	60.0%
	GGCAGATGTGGAGCGGGATT+AGG	-	tig0024019:42463-42482	Msa1413260:CDS	60.0%
!	AAGGGCAAGGGTGCATCGCT+TGG	-	tig0024019:43732-43751	Msa1413260:intron	60.0%
	CCAGCAGCTTGAGCCTACAC+AGG	+	tig0024019:43918-43937	None:intergenic	60.0%
	CCTGTGTAGGCTCAAGCTGC+TGG	-	tig0024019:43915-43934	Msa1413260:intron	60.0%
	TCCGGTGAAGCTCCTCCACG+AGG	-	tig0024019:42204-42223	Msa1413260:three_prime_UTR	65.0%
	GCCTCGTGGAGGAGCTTCAC+CGG	+	tig0024019:42208-42227	None:intergenic	65.0%
	AAGCTCCTCCACGAGGCCTC+CGG	-	tig0024019:42211-42230	Msa1413260:three_prime_UTR	65.0%
	TGAGCTCCACCGTGACGACG+TGG	+	tig0024019:42237-42256	None:intergenic	65.0%
	TGAGTTGTGGCCGTCGTGGC+TGG	-	tig0024019:42413-42432	Msa1413260:exon	65.0%
	GAGTTGTGGCCGTCGTGGCT+GGG	-	tig0024019:42414-42433	Msa1413260:exon	65.0%
	TAGGCTCAAGCTGCTGGCCG+TGG	-	tig0024019:43921-43940	Msa1413260:intron	65.0%
	ACTGGTGGTACACCCCTCCC+AGG	+	tig0024019:43954-43973	None:intergenic	65.0%
!	GGAGGGGTGTACCACCAGTG+AGG	-	tig0024019:43955-43974	Msa1413260:intron	65.0%
	GGGGTGTACCACCAGTGAGG+AGG	-	tig0024019:43958-43977	Msa1413260:intron	65.0%
	TCCGGTGAAGCTCCTCCACG+AGG	-	tig0024019:42204-42223	Msa1413260:three_prime_UTR	65.0%
	GCCTCGTGGAGGAGCTTCAC+CGG	+	tig0024019:42208-42227	None:intergenic	65.0%
	AAGCTCCTCCACGAGGCCTC+CGG	-	tig0024019:42211-42230	Msa1413260:three_prime_UTR	65.0%
	TGAGCTCCACCGTGACGACG+TGG	+	tig0024019:42237-42256	None:intergenic	65.0%
	TGAGTTGTGGCCGTCGTGGC+TGG	-	tig0024019:42413-42432	Msa1413260:exon	65.0%
	GAGTTGTGGCCGTCGTGGCT+GGG	-	tig0024019:42414-42433	Msa1413260:exon	65.0%
	TAGGCTCAAGCTGCTGGCCG+TGG	-	tig0024019:43921-43940	Msa1413260:intron	65.0%
	ACTGGTGGTACACCCCTCCC+AGG	+	tig0024019:43954-43973	None:intergenic	65.0%
!	GGAGGGGTGTACCACCAGTG+AGG	-	tig0024019:43955-43974	Msa1413260:intron	65.0%
	GGGGTGTACCACCAGTGAGG+AGG	-	tig0024019:43958-43977	Msa1413260:intron	65.0%
	CTCCACCGTGACGACGTGGC+CGG	+	tig0024019:42233-42252	None:intergenic	70.0%
	GGTGGTACACCCCTCCCAGG+CGG	+	tig0024019:43951-43970	None:intergenic	70.0%
	CTCCACCGTGACGACGTGGC+CGG	+	tig0024019:42233-42252	None:intergenic	70.0%
	GGTGGTACACCCCTCCCAGG+CGG	+	tig0024019:43951-43970	None:intergenic	70.0%
	GGCCTCCGGCCACGTCGTCA+CGG	-	tig0024019:42225-42244	Msa1413260:three_prime_UTR	75.0%
	CACCGTGACGACGTGGCCGG+AGG	+	tig0024019:42230-42249	None:intergenic	75.0%
	CTCCGGCCACGTCGTCACGG+TGG	-	tig0024019:42228-42247	Msa1413260:three_prime_UTR	75.0%
	CTGGCCGTGGAGCTCCGCCT+GGG	-	tig0024019:43934-43953	Msa1413260:intron	75.0%
	CCCTCCCAGGCGGAGCTCCA+CGG	+	tig0024019:43941-43960	None:intergenic	75.0%
	CCGTGGAGCTCCGCCTGGGA+GGG	-	tig0024019:43938-43957	Msa1413260:intron	75.0%
	CGTGGAGCTCCGCCTGGGAG+GGG	-	tig0024019:43939-43958	Msa1413260:intron	75.0%
	GGCCTCCGGCCACGTCGTCA+CGG	-	tig0024019:42225-42244	Msa1413260:three_prime_UTR	75.0%
	CACCGTGACGACGTGGCCGG+AGG	+	tig0024019:42230-42249	None:intergenic	75.0%
	CTCCGGCCACGTCGTCACGG+TGG	-	tig0024019:42228-42247	Msa1413260:three_prime_UTR	75.0%
	CTGGCCGTGGAGCTCCGCCT+GGG	-	tig0024019:43934-43953	Msa1413260:intron	75.0%
	CCCTCCCAGGCGGAGCTCCA+CGG	+	tig0024019:43941-43960	None:intergenic	75.0%
	CCGTGGAGCTCCGCCTGGGA+GGG	-	tig0024019:43938-43957	Msa1413260:intron	75.0%
	CGTGGAGCTCCGCCTGGGAG+GGG	-	tig0024019:43939-43958	Msa1413260:intron	75.0%
!	CGTGGCCGGAGGCCTCGTGG+AGG	+	tig0024019:42219-42238	None:intergenic	80.0%
!	CGACGTGGCCGGAGGCCTCG+TGG	+	tig0024019:42222-42241	None:intergenic	80.0%
!	GCTGGCCGTGGAGCTCCGCC+TGG	-	tig0024019:43933-43952	Msa1413260:intron	80.0%
!	GCCGTGGAGCTCCGCCTGGG+AGG	-	tig0024019:43937-43956	Msa1413260:intron	80.0%
!	CGTGGCCGGAGGCCTCGTGG+AGG	+	tig0024019:42219-42238	None:intergenic	80.0%
!	CGACGTGGCCGGAGGCCTCG+TGG	+	tig0024019:42222-42241	None:intergenic	80.0%
!	GCTGGCCGTGGAGCTCCGCC+TGG	-	tig0024019:43933-43952	Msa1413260:intron	80.0%
!	GCCGTGGAGCTCCGCCTGGG+AGG	-	tig0024019:43937-43956	Msa1413260:intron	80.0%

Chromosome	Type	Strat	End	Strand	Name
tig0024019	gene	42094	44320	42094	ID=Msa1413260;Name=Msa1413260
tig0024019	mRNA	42094	44320	42094	ID=Msa1413260-mRNA-1;Parent=Msa1413260;Name=Msa1413260-mRNA-1;_AED=0.15;_eAED=0.15;_QI=90\|0.6\|0.83\|0.83\|1\|1\|6\|337\|145
tig0024019	exon	42094	42490	42094	ID=Msa1413260-mRNA-1:exon:21077;Parent=Msa1413260-mRNA-1
tig0024019	exon	42623	42679	42623	ID=Msa1413260-mRNA-1:exon:21076;Parent=Msa1413260-mRNA-1
tig0024019	exon	42765	42831	42765	ID=Msa1413260-mRNA-1:exon:21075;Parent=Msa1413260-mRNA-1
tig0024019	exon	42948	43000	42948	ID=Msa1413260-mRNA-1:exon:21074;Parent=Msa1413260-mRNA-1
tig0024019	exon	43172	43213	43172	ID=Msa1413260-mRNA-1:exon:21073;Parent=Msa1413260-mRNA-1
tig0024019	exon	44072	44320	44072	ID=Msa1413260-mRNA-1:exon:21072;Parent=Msa1413260-mRNA-1
tig0024019	five_prime_UTR	44231	44320	44231	ID=Msa1413260-mRNA-1:five_prime_utr;Parent=Msa1413260-mRNA-1
tig0024019	CDS	44072	44230	44072	ID=Msa1413260-mRNA-1:cds;Parent=Msa1413260-mRNA-1
tig0024019	CDS	43172	43213	43172	ID=Msa1413260-mRNA-1:cds;Parent=Msa1413260-mRNA-1
tig0024019	CDS	42948	43000	42948	ID=Msa1413260-mRNA-1:cds;Parent=Msa1413260-mRNA-1
tig0024019	CDS	42765	42831	42765	ID=Msa1413260-mRNA-1:cds;Parent=Msa1413260-mRNA-1
tig0024019	CDS	42623	42679	42623	ID=Msa1413260-mRNA-1:cds;Parent=Msa1413260-mRNA-1
tig0024019	CDS	42431	42490	42431	ID=Msa1413260-mRNA-1:cds;Parent=Msa1413260-mRNA-1
tig0024019	three_prime_UTR	42094	42430	42094	ID=Msa1413260-mRNA-1:three_prime_utr;Parent=Msa1413260-mRNA-1

Gene Sequence

>Msa1413260

ATGAGTCGTAGTTTGGGAATTCCGGTGAAGCTCCTCCACGAGGCCTCCGGCCACGTCGTCACGGTGGAGCTCAAGAGCGGCGAACTCTACAGAGGCAACATGATTGAGTGTGAGGATAACTGGAACTGCCAACTCGAAAGCATCACTTACACTGCTAAGCCCGTCTATCTTGGTGGGAAAAAGTCTTTGGTTGTTGTGGTTGATGGAAAAACGTCACAACTTGAGCATGTATTTATTCGAGGTAGCAAAGTCAGGTTTATGGTCATACCCGACATGCTGAAGAACGCTCCCATGTTCAAGCGTTTAGATGCAAGAATCAAGGGCAAGGGTGCATCGCTTGGTGTTGGTAGAGGCAGAGCAGTTGCAATGCGAGCAAAGGCTCAAGCTGCTGGCCGTGGAGCTCCGCCTGGGAGGGGTGTACCACCAGTGAGGAGGTGA

Protein sequence

>Msa1413260

MSRSLGIPVKLLHEASGHVVTVELKSGELYRGNMIECEDNWNCQLESITYTAKPVYLGGKKSLVVVVDGKTSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKGASLGVGRGRAVAMRAKAQAAGRGAPPGRGVPPVRR*