AlfalfaGEDB | Msa0152420

M. sativa cultivar zhongmu-4 / Msa0152420

KEGG: K11699
GO: GO:0001101 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009751 GO:0009892 GO:0009987 GO:0010025 GO:0010033 GO:0010166 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043331 GO:0044237 GO:0044238 GO:0046483 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060147 GO:0060148 GO:0060255 GO:0060968 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901568 GO:1901570 GO:1901576 GO:1901698 GO:1901699 GO:1901700
PFAM: PF05183.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0152420	XP_013466600.1	94.360	1117	59	1	34	1146	1	1117	0.0	2166

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0152420	sp\|Q9LQV2\|RDR1_ARATH	61.470	1116	412	9	37	1145	2	1106	0.0	1377

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0152420	A0A072VFQ4	94.360	1117	59	1	34	1146	1	1117	0.0	2166

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012520	Msa0152420	0.994714	1.438570e-209	-8.615850e-47
Msa0061520	Msa0152420	0.821806	3.319184e-53	-8.615850e-47
Msa0152420	Msa0152550	0.800542	1.372806e-48	-8.615850e-47
Msa0152420	Msa0201330	0.849460	3.188768e-60	-8.615850e-47
Msa0152420	Msa0243910	0.858003	1.109704e-62	-8.615850e-47
Msa0152420	Msa0243930	0.837161	6.118771e-57	-8.615850e-47
Msa0152420	Msa0282590	0.802451	5.576175e-49	-8.615850e-47
Msa0152420	Msa0463460	0.831363	1.741343e-55	-8.615850e-47
Msa0152420	Msa0493850	0.824774	6.725686e-54	-8.615850e-47
Msa0152420	Msa0509020	0.839784	1.288233e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0152420	MtrunA17_Chr1g0161471	94.360	1117	59	1	34	1146	1	1117	0.0	2166
Msa0152420	MtrunA17_Chr1g0161491	82.804	1134	182	5	20	1146	1	1128	0.0	1920
Msa0152420	MtrunA17_Chr1g0161521	82.143	1120	190	3	34	1146	1	1117	0.0	1864
Msa0152420	MtrunA17_Chr1g0161511	81.996	1122	189	4	34	1146	1	1118	0.0	1857
Msa0152420	MtrunA17_Chr1g0161451	54.626	1124	462	10	38	1132	3	1107	0.0	1225
Msa0152420	MtrunA17_Chr4g0059271	39.119	1135	626	20	36	1127	7	1119	0.0	769
Msa0152420	MtrunA17_Chr3g0137841	36.540	1133	618	28	84	1137	81	1191	0.0	602
Msa0152420	MtrunA17_Chr4g0059261	55.294	85	38	0	885	969	1	85	1.64e-23	97.8
Msa0152420	MtrunA17_Chr6g0486821	21.865	654	372	27	532	1094	322	927	4.34e-14	77.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0152420	AT1G14790.1	61.470	1116	412	9	37	1145	2	1106	0.0	1377
Msa0152420	AT4G11130.1	38.489	1138	623	22	39	1128	11	1119	0.0	747
Msa0152420	AT3G49500.3	36.253	1073	582	27	133	1129	130	1176	1.21e-173	543
Msa0152420	AT3G49500.4	36.253	1073	582	27	133	1129	130	1176	1.21e-173	543
Msa0152420	AT3G49500.1	36.253	1073	582	27	133	1129	130	1176	1.21e-173	543
Msa0152420	AT3G49500.2	36.253	1073	582	27	133	1129	130	1176	1.21e-173	543
Msa0152420	AT3G49500.5	36.253	1073	582	27	133	1129	130	1176	1.21e-173	543
Msa0152420	AT2G19930.3	24.963	677	383	27	399	981	195	840	5.72e-29	125
Msa0152420	AT2G19930.2	24.963	677	383	27	399	981	201	846	6.34e-29	125
Msa0152420	AT2G19930.1	25.197	635	352	25	440	981	242	846	5.69e-28	122

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Find 247 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGTTGGCATTGAAGA+TGG	0.454789	1_4:+15033085	Msa0152420:CDS
AAACAACACAATCCACCATA+TGG	0.494194	1_4:-15035819	None:intergenic
AAAGATATAGTCAGTGACCG+AGG	0.695377	1_4:-15034566	None:intergenic
AAAGCCGTCGAATTCCATGT+CGG	0.717438	1_4:-15037160	None:intergenic
AAATATCTCTTGAACTTGCC+AGG	0.478082	1_4:+15035122	Msa0152420:CDS
AAATCAAGAAGGAGAAAGCC+CGG	0.557265	1_4:+15037544	Msa0152420:CDS
AAATCTCTTTACATCAGGCA+CGG	0.656840	1_4:-15033153	None:intergenic
AACAAATTATGACTACAAGT+TGG	0.460381	1_4:+15037215	Msa0152420:CDS
AACTATGCCATTTCTAAGGA+TGG	0.476554	1_4:-15034819	None:intergenic
AACTCCTTGCTTCTTTCCTT+AGG	0.379530	1_4:-15037362	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTCTCTCTTGAACAAATTTA+AGG	-	chr1_4:15032897-15032916	None:intergenic	30.0%
TTTCTTCTCCTATCCTATTT+AGG	+	chr1_4:15033056-15033075	Msa0152420:CDS	30.0%
TCTACAAATCTCTTTACATC+AGG	-	chr1_4:15033161-15033180	None:intergenic	30.0%
GTTGCTATAAAGATAAGAGA+AGG	+	chr1_4:15033206-15033225	Msa0152420:CDS	30.0%
CTATTTAAAAGTTCGGGAAA+TGG	+	chr1_4:15033343-15033362	Msa0152420:CDS	30.0%
AGCTTTCATACGAGAATATT+TGG	+	chr1_4:15033558-15033577	Msa0152420:CDS	30.0%
ATGCATTAAATGCAACAAAC+AGG	-	chr1_4:15033722-15033741	None:intergenic	30.0%
CTCTTCTGTTTGTAGTTAAT+TGG	+	chr1_4:15034002-15034021	Msa0152420:intron	30.0%
AATGGAATTTGAATTCCTTG+AGG	-	chr1_4:15034329-15034348	None:intergenic	30.0%
CTGACTATATCTTTGGATAA+CGG	+	chr1_4:15034575-15034594	Msa0152420:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	15032870	15037623	15032870	ID=Msa0152420;Name=Msa0152420
chr1_4	mRNA	15032870	15037623	15032870	ID=Msa0152420-mRNA-1;Parent=Msa0152420;Name=Msa0152420-mRNA-1;_AED=0.35;_eAED=0.35;_QI=135\|0.33\|0.25\|0.5\|1\|1\|4\|0\|1146
chr1_4	exon	15032870	15033634	15032870	ID=Msa0152420-mRNA-1:exon:5920;Parent=Msa0152420-mRNA-1
chr1_4	exon	15034017	15035860	15034017	ID=Msa0152420-mRNA-1:exon:5921;Parent=Msa0152420-mRNA-1
chr1_4	exon	15036311	15036461	15036311	ID=Msa0152420-mRNA-1:exon:5922;Parent=Msa0152420-mRNA-1
chr1_4	exon	15036808	15037623	15036808	ID=Msa0152420-mRNA-1:exon:5923;Parent=Msa0152420-mRNA-1
chr1_4	five_prime_UTR	15032870	15033004	15032870	ID=Msa0152420-mRNA-1:five_prime_utr;Parent=Msa0152420-mRNA-1
chr1_4	CDS	15033005	15033634	15033005	ID=Msa0152420-mRNA-1:cds;Parent=Msa0152420-mRNA-1
chr1_4	CDS	15034017	15035860	15034017	ID=Msa0152420-mRNA-1:cds;Parent=Msa0152420-mRNA-1
chr1_4	CDS	15036311	15036461	15036311	ID=Msa0152420-mRNA-1:cds;Parent=Msa0152420-mRNA-1
chr1_4	CDS	15036808	15037623	15036808	ID=Msa0152420-mRNA-1:cds;Parent=Msa0152420-mRNA-1

Gene Sequence

>Msa0152420

ATGATTTTTTTGATGCAGAAGTTTAACAGTAACATTAATTTTTTGAATTATTTTCTTCTCCTATCCTATTTAGGAAAATCAAAAGAGTTGGCATTGAAGATGGTTAAAAGTAAAACAATTGAGTTGTATGGATTTCCTCATTATGTGACCGTGCCTGATGTAAAGAGATTTGTAGAGCAGTATACTGGTGAAGGAAGCGTGGTTGCTATAAAGATAAGAGAAGGCAAAGCCCGTATTCGAACAGCATTTGCTATTATTCAATTCACTACTAAAGATCATGCTACAGATATGATGACCTTACCTAGCAGAAGTTTGTCGCCATTGCAGTACGGGAGCTCCTATTTAAAAGTTCGGGAAATGGAAAGAGATATTGTTCCAAGGCCAAGGGAATTTTTGCACAGTTTGGATGAGGTGAAACTGTATTTTGGCTGTCAAATCTCAAAGAAAAGATTATCTGTTTTATGGAGAGAGGAGAATGTTAGAGTTGATTTTGGGATTGGAATGAAAAAGTGGCGATTCTCTTTGTGCCATGACAATAAGACGTTCAAACTTGAGCTTTCATACGAGAATATTTGGAAGATTGAGCTGCATCAGCCACGGGGTAAAACTACAAAGTATCTATTGATTCAGTTAATTGGTGCTCCTCGGGTTTTTGAGCTTTATTCTCATACTTCAGATGATGCATATAACATATACGAAGATCCTTTTAAGAACTATTTTATTGATCCCCCTGATGACCAATGGATCCGTACAGTAGATTTCACTCCATGCACTTGTATTGGGCAGTCTTCTGCTTTATGTCTAGAGCTTCCTAGCAGCAGAGATTTTCCGAATTTCAGGGAAAACTTTGCTCATTACGAGGAAAGTGCGGGTCCATACACATTGGAGAGTGGATCACCTTTTTCTTGCAATCCGGATGTTGTCCCCATGGTTGCTCCTCCTCAAGGAATTCAAATTCCATTTGACATCTTGTTTAAAGTTAATTCATTGGTTCAGCACGGGTGTCTTTCAGGTTCTGAACTCGATAATGCTTTCTATCATCTAGTTGATCCAACTAGAAAGAATGTTGAGCTTATTGAGAATGCTTTAGAAAAGATGTACTATTCAAAGGATTTCTGTTATGAACCCGTGAAATGGCTGAAAGATCAGTACGAAATGTACCGTAGTTCAAATAATCCACCTCGGTCACTGACTATATCTTTGGATAACGGTTTGGTATATGTTTGCAGGGCACAGATAACACCTTGCAAAGTATACTTTTGTGGTCCAGAGATCAATGTCTCAAATCGTGTTCTGCGTAAATACAAAAAATATATGGATAACTTTCTACGTGTTTCGTTTGTTGACGAGGAGTTGGATAAACTGTATTCGTCAGATTTATCTTCACGTATTTCCGTGGGTGGAAGAACTGATATATACTATAGAATTCTTTCCATCCTTAGAAATGGCATAGTTATTGGTGATAAGAAGTTTGAATTTCTAGCTTTCTCATCAAGTCAGTTGCGTGAAAGTTCGCTATGGATGTTTGCTCGTACACCAACTGGAGATACCGCTGGATCCATAAGGGAATGGATGGGAGATTTTAGCCGCATAAAAAATGTAGCTAAATATGCTGCTAGACTTGGACAATCTTTTGGTTCCTCTACCGAAACTACAACGGTCAGCAGCACTGAAATTGAAATTATTCTTGATGTACATAATAAAACCAAATATGTCTTCTCTGATGGAATTGGGAAAATATCTCTTGAACTTGCCAGGAGAGTGGCTAAAAAATGTGGTTATGATTCTATGCCGTCTGCCTTCCAGATTCGGTATGGCGGGTACAAAGGAGTTGTGGCTGTTGATCCAACATCATCGGTAAAGTTGTCACTGAGGATGAGCATGCTCAAGTACGATTCAGACAACACAGATTTGGATGTTTTGGCATGTAGTAAGTTCCGGCCTTGTTATCTGAATCGACAGTTGATTTCTCTCTTATCCACTCTTGATGTCAAGGACAGTGTTTTCGAGAAAAAACAAAAAGAAGCTGTTGATCAACTGAACACAATACTAACAGATTCGACGAAGGCACGCGAGGTTTTGGACTTGATGTCTTCCGGGGAGGTCACTAATATTCTGAAAGAGATGCTTATTTGTGGTTACAAGCCTAATGTTGAACCATTTCTTTCAATGATGCTGCAGACATTTAGGGCCTCAAAACTTTTGGAACTGCGGCAAAAAACTAGGATATTTATTCCAAAAGGAAGAGCAATGATGGGAGTTCTAGATGAAACTAGAACCCTAGAATATGGTGAAGTTTTTGTTCAATATTCTAACAATAGGGAAGACAGTCTTTCTCATGTAGTTAATGGTAAGGTTGTTGTAGCGAAAAACCCGTGCTTGCACCCAGGTGATGTTCGTGTTTTGAAGGCTGTGGATGTGCCAGCTTTGCGCCATATGGTGGATTGTGTTGTTTTCCCTCAAAAAGGTCACAGACCACATCCAAATGAATGTTCGGGAAGTGATCTTGATGGGGACATCTACTTTGTTTGCTGGGATTCTGAATTGATTCCACCTCGAACAATTGATCCAATGGAGTATGATTCTGCCAAACCTATTGTATTGGATCATGATGTGGAGATTGAGGAAGTGCAGCAGTATTTTACCAATTACATACTCAACGATTGTCTTGGAATAATTGCCAATGCACACACCGTCTTTGCAGACAAAGAACCTGGAAAAGCAATGGCAGGTCCATGTGTTGAACTTGCAAAGCTGTTCTCAACAGCAGTTGACTTTCCAAAAACCGGTATCCCAGCAGAAATACCTCGTCGTCTTATCCCCACAGAATATCCAGATTTCATGGAAAAGCCTAACAAACCTATCTACAAATCAAAGAATGTAATAGGAAAACTTTTTAGGGAAATTCAAGGTATTTCAACAAAGGACGGCTCTATTACATCCTTCACATTGGAAGTGGCTAAAGAGTCCTATGATTCCGACATGGAATTCGACGGCTTTATGGATTATGTTGATGATGCCTTCTATCACAAAACAAATTATGACTACAAGTTGGGAAATCTGATGGACTACTATGGTATCAAAACTGAATCAGAAATCCTAAGTGGGAATATTATGAAAATGTCGAAATCTTTCACCAAAAGAAGGGATGCAGATGCAATTACTATGGCTGTAAGGTCCCTAAGGAAAGAAGCAAGGAGTTGGTTCAATGAAGACGATACTGGGAGTGATGATGCATATGCAAAAGCTTCTGCTTGGTACTATGTTACTTACCATCATAGTTACTATGGTGTGTACAATGAAGGTATGAAAAGGGACCATTTTCTAAGCTTTCCATGGTGTGTTTACCATTTGCTTGTCCAAATCAAGAAGGAGAAAGCCCGGATGAGGATGCATTCGAGCATGGAACAAAGCTTCAGTCGCAGGTTGCGTCTTGACTGA

Protein sequence

>Msa0152420

MIFLMQKFNSNINFLNYFLLLSYLGKSKELALKMVKSKTIELYGFPHYVTVPDVKRFVEQYTGEGSVVAIKIREGKARIRTAFAIIQFTTKDHATDMMTLPSRSLSPLQYGSSYLKVREMERDIVPRPREFLHSLDEVKLYFGCQISKKRLSVLWREENVRVDFGIGMKKWRFSLCHDNKTFKLELSYENIWKIELHQPRGKTTKYLLIQLIGAPRVFELYSHTSDDAYNIYEDPFKNYFIDPPDDQWIRTVDFTPCTCIGQSSALCLELPSSRDFPNFRENFAHYEESAGPYTLESGSPFSCNPDVVPMVAPPQGIQIPFDILFKVNSLVQHGCLSGSELDNAFYHLVDPTRKNVELIENALEKMYYSKDFCYEPVKWLKDQYEMYRSSNNPPRSLTISLDNGLVYVCRAQITPCKVYFCGPEINVSNRVLRKYKKYMDNFLRVSFVDEELDKLYSSDLSSRISVGGRTDIYYRILSILRNGIVIGDKKFEFLAFSSSQLRESSLWMFARTPTGDTAGSIREWMGDFSRIKNVAKYAARLGQSFGSSTETTTVSSTEIEIILDVHNKTKYVFSDGIGKISLELARRVAKKCGYDSMPSAFQIRYGGYKGVVAVDPTSSVKLSLRMSMLKYDSDNTDLDVLACSKFRPCYLNRQLISLLSTLDVKDSVFEKKQKEAVDQLNTILTDSTKAREVLDLMSSGEVTNILKEMLICGYKPNVEPFLSMMLQTFRASKLLELRQKTRIFIPKGRAMMGVLDETRTLEYGEVFVQYSNNREDSLSHVVNGKVVVAKNPCLHPGDVRVLKAVDVPALRHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDSELIPPRTIDPMEYDSAKPIVLDHDVEIEEVQQYFTNYILNDCLGIIANAHTVFADKEPGKAMAGPCVELAKLFSTAVDFPKTGIPAEIPRRLIPTEYPDFMEKPNKPIYKSKNVIGKLFREIQGISTKDGSITSFTLEVAKESYDSDMEFDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKTESEILSGNIMKMSKSFTKRRDADAITMAVRSLRKEARSWFNEDDTGSDDAYAKASAWYYVTYHHSYYGVYNEGMKRDHFLSFPWCVYHLLVQIKKEKARMRMHSSMEQSFSRRLRLD*