AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1302120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1302120 MtrunA17_Chr4g0055931 99.387 326 2 0 1 326 1 326 0.0 669
Msa1302120 MtrunA17_Chr2g0331031 51.744 344 139 11 1 323 1 338 2.52e-97 291
Msa1302120 MtrunA17_Chr5g0415191 48.768 203 65 5 1 183 3 186 1.98e-48 164
Msa1302120 MtrunA17_Chr6g0488471 47.568 185 75 4 1 173 1 175 7.88e-46 157
Msa1302120 MtrunA17_Chr8g0389241 48.889 180 70 6 3 167 4 176 3.00e-42 147
Msa1302120 MtrunA17_Chr4g0059701 54.902 153 58 5 15 162 5 151 2.36e-36 132
Msa1302120 MtrunA17_Chr1g0210471 52.800 125 43 2 49 173 93 201 2.14e-35 128
Msa1302120 MtrunA17_Chr3g0135671 41.622 185 94 4 1 180 3 178 2.96e-34 125
Msa1302120 MtrunA17_Chr4g0062741 58.654 104 36 1 89 192 132 228 1.68e-33 125
Msa1302120 MtrunA17_Chr3g0104071 60.000 100 38 1 71 168 121 220 2.93e-32 122
Msa1302120 MtrunA17_Chr1g0162081 47.727 132 57 2 37 168 76 195 1.51e-31 120
Msa1302120 MtrunA17_Chr5g0429521 73.239 71 19 0 89 159 126 196 4.19e-31 119
Msa1302120 MtrunA17_Chr7g0241761 66.667 81 27 0 87 167 132 212 4.77e-31 119
Msa1302120 MtrunA17_Chr3g0092621 67.647 68 22 0 95 162 84 151 4.77e-28 107
Msa1302120 MtrunA17_Chr5g0436501 64.198 81 27 1 90 168 120 200 7.48e-28 109
Msa1302120 MtrunA17_Chr5g0409841 36.111 144 86 3 47 184 42 185 6.05e-23 95.1
Msa1302120 MtrunA17_Chr6g0452791 47.368 95 42 1 96 190 81 167 1.69e-20 87.0
Msa1302120 MtrunA17_Chr5g0440731 40.678 118 58 4 47 158 60 171 5.61e-20 88.6
Msa1302120 MtrunA17_Chr5g0440741 41.379 116 55 5 47 158 60 166 1.33e-19 87.4
Msa1302120 MtrunA17_Chr5g0409831 47.368 76 39 1 68 142 49 124 3.32e-18 82.0
Msa1302120 MtrunA17_Chr1g0192061 36.719 128 65 5 43 157 1 125 2.73e-15 73.2
Msa1302120 MtrunA17_Chr8g0365011 41.237 97 37 3 92 168 83 179 3.09e-15 74.7
Msa1302120 MtrunA17_Chr8g0364731 58.621 58 22 1 104 159 10 67 6.94e-15 72.0
Msa1302120 MtrunA17_Chr5g0432921 39.583 96 43 4 76 157 83 177 2.45e-12 65.5
Msa1302120 MtrunA17_Chr3g0113121 35.088 114 62 3 97 201 97 207 2.20e-11 62.8
Msa1302120 MtrunA17_Chr8g0370121 28.244 131 89 2 92 220 97 224 4.91e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1302120 AT5G47390.1 63.277 354 95 10 1 321 1 352 1.58e-135 389
Msa1302120 AT3G16350.1 45.288 382 131 15 1 318 1 368 4.74e-71 226
Msa1302120 AT5G61620.1 50.267 187 71 5 1 173 8 186 1.52e-49 168
Msa1302120 AT1G70000.1 50.244 205 59 7 1 185 1 182 2.39e-48 163
Msa1302120 AT1G70000.2 50.244 205 59 7 1 185 1 182 2.39e-48 163
Msa1302120 AT5G56840.1 44.751 181 57 6 1 161 1 158 2.82e-39 139
Msa1302120 AT2G38090.1 71.795 78 22 0 90 167 136 213 2.51e-33 125
Msa1302120 AT1G74840.2 52.667 150 55 5 21 162 22 163 4.71e-33 122
Msa1302120 AT1G19000.2 45.128 195 89 4 5 191 4 188 5.95e-33 123
Msa1302120 AT1G19000.1 45.128 195 89 4 5 191 4 188 5.95e-33 123
Msa1302120 AT1G74840.1 52.667 150 55 5 21 162 22 163 7.76e-33 122
Msa1302120 AT5G08520.1 52.336 107 51 0 62 168 85 191 8.76e-33 123
Msa1302120 AT1G49010.1 68.293 82 24 1 89 168 128 209 1.15e-32 123
Msa1302120 AT5G04760.1 62.195 82 31 0 83 164 87 168 1.23e-31 118
Msa1302120 AT5G58900.1 72.857 70 19 0 90 159 136 205 5.34e-31 118
Msa1302120 AT3G11280.2 55.000 100 45 0 60 159 92 191 8.52e-29 112
Msa1302120 AT3G11280.1 55.000 100 45 0 60 159 92 191 8.52e-29 112
Msa1302120 AT5G01200.1 63.636 77 28 0 89 165 140 216 3.38e-28 110
Msa1302120 AT5G05790.2 63.636 77 28 0 83 159 119 195 1.26e-26 106
Msa1302120 AT5G05790.1 63.636 77 28 0 83 159 119 195 1.26e-26 106
Msa1302120 AT3G10580.2 48.039 102 51 1 68 169 68 167 8.12e-24 98.6
Msa1302120 AT3G10580.1 48.039 102 51 1 68 169 68 167 1.29e-23 98.6
Msa1302120 AT4G09450.1 48.515 101 46 2 75 169 68 168 6.13e-22 92.0
Msa1302120 AT5G23650.1 51.948 77 37 0 83 159 108 184 1.53e-20 90.9
Msa1302120 AT3G10590.1 48.276 87 41 3 79 162 92 177 3.53e-18 82.0

Find 143 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCATGTGTTTCTTTCTT+AGG 0.230059 8_3:-64503592 None:intergenic
TTCATCAAATATACTTGGTT+TGG 0.266321 8_3:+64503835 Msa1302120:three_prime_UTR
TTTATCCACGACAAGATAAA+TGG 0.288105 8_3:+64499926 Msa1302120:five_prime_UTR
GTTTGTGTTTGTTTGCTTGT+AGG 0.301972 8_3:+64503904 Msa1302120:three_prime_UTR
ATCGACATTGATTGGGCTCT+TGG 0.306199 8_3:-64503638 None:intergenic
GATCCGGAAAAGTGCTAGTA+TGG 0.310152 8_3:+64500253 Msa1302120:CDS
GGTTTATTTGTATTTATGTT+TGG 0.320649 8_3:-64500024 None:intergenic
CATTGATGTCGGGCTTTAAT+GGG 0.332518 8_3:-64503471 None:intergenic
GCATTGATGTCGGGCTTTAA+TGG 0.338606 8_3:-64503472 None:intergenic
GTTGTGTTGTGTTGTGTTGT+TGG 0.344442 8_3:+64499954 Msa1302120:five_prime_UTR
AACAGCTTCACACCACGATT+TGG 0.346847 8_3:-64500209 None:intergenic
TCATCAAATATACTTGGTTT+GGG 0.349945 8_3:+64503836 Msa1302120:three_prime_UTR
ATTGGGCTCTTGGAATGTAC+TGG 0.350663 8_3:-64503628 None:intergenic
ATTTGTATTTATGTTTGGTT+TGG 0.350949 8_3:-64500019 None:intergenic
ACGAGTTCATCGACATTGAT+TGG 0.357821 8_3:-64503646 None:intergenic
CTCCCTGCATTTGTTACACT+GGG 0.361159 8_3:-64504094 None:intergenic
CACTATAGCGGGTCCGGGTC+TGG 0.363851 8_3:+64500287 Msa1302120:CDS
GGTGAAACTATTGGTGATAC+TGG 0.369014 8_3:+64503691 Msa1302120:CDS
TTTCCTCTTCCATATTGGTC+TGG 0.369873 8_3:+64503550 Msa1302120:CDS
AACGAGAGAGGTGAATTATC+AGG 0.373216 8_3:-64500114 None:intergenic
TGTGTTTCTTTCTTAGGAGC+TGG 0.373891 8_3:-64503586 None:intergenic
CCTTGATATAACATAGTTCC+TGG 0.379937 8_3:-64502483 None:intergenic
CCTCCCTGCATTTGTTACAC+TGG 0.381440 8_3:-64504095 None:intergenic
ATGTTTGGTTTGGTCTCCCT+CGG 0.397830 8_3:-64500009 None:intergenic
CTTAGCCACTATAGCGGGTC+CGG 0.398806 8_3:+64500281 Msa1302120:CDS
ACAAACTAGGTTAACCATTC+TGG 0.399924 8_3:-64503887 None:intergenic
TTCAATTTCATTTCATGCCT+CGG 0.409007 8_3:+64500067 Msa1302120:five_prime_UTR
GATCATGGTGCTGATGGTTA+TGG 0.418054 8_3:+64500359 Msa1302120:CDS
TAACCATCAGCACCATGATC+AGG 0.421312 8_3:-64500356 None:intergenic
TAGAAGTTGAGTATAGTGAT+TGG 0.425963 8_3:-64499801 None:intergenic
CTCTTGGAATGTACTGGGGT+TGG 0.426876 8_3:-64503622 None:intergenic
GCTTGTAGGCAGTAGTATCT+AGG 0.428846 8_3:+64503918 Msa1302120:three_prime_UTR
TTCATACAACTCCAGCTTGT+GGG 0.433206 8_3:+64503770 Msa1302120:CDS
TTGGGCTCTTGGAATGTACT+GGG 0.435041 8_3:-64503627 None:intergenic
GGAAGAGGAAAAGGGAAGAA+TGG 0.436557 8_3:-64503538 None:intergenic
AGTAGTATCTAGGATTTACT+TGG 0.439017 8_3:+64503928 Msa1302120:three_prime_UTR
GACCAATATGGAAGAGGAAA+AGG 0.441108 8_3:-64503547 None:intergenic
TGCGGTACCATTGAAGTATC+AGG 0.442348 8_3:-64503316 None:intergenic
CTGAGTTTAGGTGAAACTAT+TGG 0.449826 8_3:+64503682 Msa1302120:CDS
ACGGGTCATGATTTCTGAAC+CGG 0.452893 8_3:-64500141 None:intergenic
GCAGGCACCTGATACTTCAA+TGG 0.455907 8_3:+64503309 Msa1302120:intron
GACGCTTGTGCATTGATGTC+GGG 0.457053 8_3:-64503481 None:intergenic
ATGCCTCGGATCCTGTGATT+CGG 0.462408 8_3:+64500081 Msa1302120:five_prime_UTR
GGACTGTATCCAGACCAATA+TGG 0.463662 8_3:-64503559 None:intergenic
AATCGTGGTGTGAAGCTGTT+TGG 0.464828 8_3:+64500212 Msa1302120:CDS
CGAGTTCATCGACATTGATT+GGG 0.465415 8_3:-64503645 None:intergenic
CATCTGCAACAATATCAAAC+AGG 0.473584 8_3:-64502586 None:intergenic
TGTAATTCATCAAATATACT+TGG 0.476466 8_3:+64503830 Msa1302120:three_prime_UTR
TGCACAAGCGTCGGCTTACC+CGG 0.477679 8_3:+64503492 Msa1302120:CDS
TGAAAAGCCGACTGTCTAGA+AGG 0.477844 8_3:-64503751 None:intergenic
ACAAGCTGGGCAAAGGTGAT+TGG 0.481462 8_3:+64502450 Msa1302120:CDS
GTTCTCATTGCAGCCACAAT+GGG 0.482827 8_3:+64500168 Msa1302120:CDS
TCATCGAGTGGAGGAGGAGC+AGG 0.484781 8_3:-64503394 None:intergenic
TTCACCTCTCTCGTTCGATC+CGG 0.485313 8_3:+64500122 Msa1302120:five_prime_UTR
CTATGTTCCTCCTCAGTCCA+TGG 0.485937 8_3:-64502407 None:intergenic
GAGGCATGAAATGAAATTGA+AGG 0.488386 8_3:-64500065 None:intergenic
TTTATGACCGTGGATTGGTT+CGG 0.489533 8_3:-64499847 None:intergenic
GGCATGTCAAAACTGAGTTT+AGG 0.490022 8_3:+64503670 Msa1302120:CDS
TAAGATTAACCGATGGGATC+CGG 0.490318 8_3:+64500237 Msa1302120:CDS
TCTTTCTTAGGAGCTGGCTC+AGG 0.491218 8_3:-64503580 None:intergenic
AAGAATGGAGAATAATATGC+TGG 0.499540 8_3:-64503523 None:intergenic
GTTTGAGTTTGTAGAATCCA+TGG 0.503591 8_3:-64503428 None:intergenic
CGACGCTTGTGCATTGATGT+CGG 0.504753 8_3:-64503482 None:intergenic
GTGATTGGCGTGGAATTGCC+AGG 0.506530 8_3:+64502465 Msa1302120:CDS
CAGACCCGGACCCGCTATAG+TGG 0.508114 8_3:-64500286 None:intergenic
CTTAAATAGGAAGCACAACT+TGG 0.509265 8_3:-64504043 None:intergenic
CACAGAACAGTCCCACAAGC+TGG 0.510753 8_3:-64503781 None:intergenic
TTACTTGGATTGAACAAGCT+GGG 0.512315 8_3:+64502437 Msa1302120:CDS
CATTCTTCATCGAGTGGAGG+AGG 0.516097 8_3:-64503400 None:intergenic
ACCAATATGGAAGAGGAAAA+GGG 0.517539 8_3:-64503546 None:intergenic
GTTTATTTATGACCGTGGAT+TGG 0.521412 8_3:-64499852 None:intergenic
CCAGGAACTATGTTATATCA+AGG 0.521846 8_3:+64502483 Msa1302120:CDS
AGTGGAGGAGGAGCAGGCAA+AGG 0.525729 8_3:-64503388 None:intergenic
GGAGATTGTTGACGTGGCAG+AGG 0.526371 8_3:-64499826 None:intergenic
TTTACTTGGATTGAACAAGC+TGG 0.526943 8_3:+64502436 Msa1302120:CDS
TCAAATACTCCTGGTTCACC+TGG 0.529002 8_3:+64500326 Msa1302120:CDS
TAAGAAAGAAACACATGAAG+TGG 0.531198 8_3:+64503594 Msa1302120:CDS
CAAGCAAACAAACACAAACT+AGG 0.532269 8_3:-64503900 None:intergenic
TAATATGCTGGATATACTAC+CGG 0.533057 8_3:-64503511 None:intergenic
CGATGAAGAATGTGAGTCCA+TGG 0.537872 8_3:+64503411 Msa1302120:CDS
GTGGAGGAGGAGCAGGCAAA+GGG 0.545011 8_3:-64503387 None:intergenic
TGTTTGGTTTGGTCTCCCTC+GGG 0.548440 8_3:-64500008 None:intergenic
AACCCTGATCATGGTGCTGA+TGG 0.553194 8_3:+64500353 Msa1302120:CDS
GTAGTATCTAGGATTTACTT+GGG 0.553645 8_3:+64503929 Msa1302120:three_prime_UTR
GTCGGGCTTTAATGGGGCAG+AGG 0.557337 8_3:-64503464 None:intergenic
TGCAACAATATCAAACAGGC+TGG 0.557484 8_3:-64502582 None:intergenic
TGTTCTCATTGCAGCCACAA+TGG 0.558526 8_3:+64500167 Msa1302120:CDS
GGTAATCTTAGCCACTATAG+CGG 0.560908 8_3:+64500275 Msa1302120:CDS
TCTCGTAAACTACTTGAAGA+AGG 0.563354 8_3:+64503727 Msa1302120:CDS
GATTCTACAAACTCAAACGA+TGG 0.564664 8_3:+64503433 Msa1302120:CDS
TATCCAGACCAATATGGAAG+AGG 0.565662 8_3:-64503553 None:intergenic
TTAGCCACTATAGCGGGTCC+GGG 0.567360 8_3:+64500282 Msa1302120:CDS
TTTCATACAACTCCAGCTTG+TGG 0.570031 8_3:+64503769 Msa1302120:CDS
AGTTTACGAGACAGAGTCGA+GGG 0.572728 8_3:-64503715 None:intergenic
TCAGGCAAAGCAATGTGTCT+AGG 0.575738 8_3:+64502546 Msa1302120:CDS
AATACCGGGTCAAATACTCC+TGG 0.575888 8_3:+64500317 Msa1302120:CDS
TTGGAGTAAGATTAACCGAT+GGG 0.581339 8_3:+64500231 Msa1302120:CDS
ACTATCCATTTATCTTGTCG+TGG 0.585024 8_3:-64499931 None:intergenic
TGCTGATGGTTATGGTTCTG+AGG 0.588306 8_3:+64500367 Msa1302120:CDS
GGATTGAACAAGCTGGGCAA+AGG 0.588333 8_3:+64502443 Msa1302120:CDS
AACCATCAGCACCATGATCA+GGG 0.589650 8_3:-64500355 None:intergenic
TGGTTCGGAGATTGTTGACG+TGG 0.590211 8_3:-64499832 None:intergenic
CCTGGTGAAAACCCTGATCA+TGG 0.590290 8_3:+64500344 Msa1302120:CDS
TGATCGTTTATTTATGACCG+TGG 0.591106 8_3:-64499857 None:intergenic
GTAATCTTAGCCACTATAGC+GGG 0.591144 8_3:+64500276 Msa1302120:CDS
CGGGAAGTAGAAGAAGAACC+AGG 0.591204 8_3:-64500398 None:intergenic
ACTAGGTTAACCATTCTGGA+AGG 0.591528 8_3:-64503883 None:intergenic
CTCTGCAGCAGCAAAACCCG+AGG 0.598531 8_3:+64499992 Msa1302120:five_prime_UTR
ATCAATGTCGATGAACTCGT+TGG 0.598709 8_3:+64503649 Msa1302120:CDS
GACTCACATTCTTCATCGAG+TGG 0.599669 8_3:-64503406 None:intergenic
AGAAGGTCCTTCTAGACAGT+CGG 0.599702 8_3:+64503744 Msa1302120:CDS
CAACTACAAACTGAAACAGA+AGG 0.603118 8_3:+64503358 Msa1302120:CDS
ATTGATGTCGGGCTTTAATG+GGG 0.617600 8_3:-64503470 None:intergenic
ATCCGGAAAAGTGCTAGTAT+GGG 0.617740 8_3:+64500254 Msa1302120:CDS
TTCTTGAGTTGTGCCCATTG+TGG 0.619382 8_3:-64500181 None:intergenic
ATCTTGTCGTGGATAAAGAG+AGG 0.620375 8_3:-64499920 None:intergenic
ATCAAGGACACCTACTCAAG+TGG 0.620432 8_3:+64502499 Msa1302120:CDS
TGAACCGGATCGAACGAGAG+AGG 0.621078 8_3:-64500126 None:intergenic
GCTGCAATGAGAACAACGAC+GGG 0.624049 8_3:-64500159 None:intergenic
CGACATCAATGCACAAGCGT+CGG 0.624911 8_3:+64503483 Msa1302120:CDS
CTGGGCAAAGGTGATTGGCG+TGG 0.626265 8_3:+64502455 Msa1302120:CDS
GATCCGAATCACAGGATCCG+AGG 0.626517 8_3:-64500084 None:intergenic
CTAGGTTAACCATTCTGGAA+GGG 0.628075 8_3:-64503882 None:intergenic
TTTGGAGTAAGATTAACCGA+TGG 0.628079 8_3:+64500230 Msa1302120:CDS
ATGTGTCTAGGCGGAAGAGA+CGG 0.634804 8_3:+64502558 Msa1302120:CDS
AATATGCTGGATATACTACC+GGG 0.636844 8_3:-64503510 None:intergenic
TGGGCTCTTGGAATGTACTG+GGG 0.642523 8_3:-64503626 None:intergenic
GCGTGACTGGCCACTTGAGT+AGG 0.645270 8_3:-64502509 None:intergenic
GGCTGCAATGAGAACAACGA+CGG 0.647502 8_3:-64500160 None:intergenic
TTAGCTGACAAGAAGTCTTG+CGG 0.653600 8_3:-64503334 None:intergenic
TGCAGGCACTCCATGGACTG+AGG 0.655185 8_3:+64502397 Msa1302120:intron
GGTATTCAAAAGTCCAGACC+CGG 0.655952 8_3:-64500300 None:intergenic
ACAATCTCCGAACCAATCCA+CGG 0.660058 8_3:+64499840 Msa1302120:five_prime_UTR
TGAGCATTATTATCATGATG+TGG 0.662122 8_3:+64503802 Msa1302120:exon
TCAAGAACTTGTCCAAATCG+TGG 0.664250 8_3:+64500197 Msa1302120:CDS
TAGTTTACGAGACAGAGTCG+AGG 0.668337 8_3:-64503716 None:intergenic
TCACATTCTTCATCGAGTGG+AGG 0.671641 8_3:-64503403 None:intergenic
TCTGCAGCAGCAAAACCCGA+GGG 0.677080 8_3:+64499993 Msa1302120:five_prime_UTR
AGGCACTCCATGGACTGAGG+AGG 0.685831 8_3:+64502400 Msa1302120:intron
GGCAAAGCAATGTGTCTAGG+CGG 0.687559 8_3:+64502549 Msa1302120:CDS
TGAACCAGGAGTATTTGACC+CGG 0.708436 8_3:-64500321 None:intergenic
GTTTACGAGACAGAGTCGAG+GGG 0.738520 8_3:-64503714 None:intergenic
GGTAAAGATAAGATGCTACG+CGG 0.788761 8_3:-64499899 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTAGTTTCTTTTTAA+AGG - chr8_3:64501518-64501537 None:intergenic 10.0%
!!! ATTTTTAATATTTTATTTGC+AGG + chr8_3:64502380-64502399 Msa1302120:intron 10.0%
!!! GAAAAAGTATTAAAAAAAAA+CGG - chr8_3:64503058-64503077 None:intergenic 10.0%
!!! TTATATTTTTGATTTTTGGT+TGG + chr8_3:64500599-64500618 Msa1302120:intron 15.0%
!! ATTATTATGTTTGTTTAACT+TGG + chr8_3:64500806-64500825 Msa1302120:intron 15.0%
!!! CAATAATTTTAATAATAGAG+AGG - chr8_3:64501719-64501738 None:intergenic 15.0%
!!! AAATATCATTTAAAGCAAAA+AGG - chr8_3:64502141-64502160 None:intergenic 15.0%
!! ATTAAAGAAAAAAACACATT+TGG - chr8_3:64502728-64502747 None:intergenic 15.0%
!! ATTTGTATTTATGTTTGGTT+TGG - chr8_3:64500022-64500041 None:intergenic 20.0%
!! GGTTTATTTGTATTTATGTT+TGG - chr8_3:64500027-64500046 None:intergenic 20.0%
!!! AAATGAAATTGAAGGTTTTA+AGG - chr8_3:64500060-64500079 None:intergenic 20.0%
!!! ATCTGAAATATATTGAATGT+TGG + chr8_3:64500714-64500733 Msa1302120:intron 20.0%
!!! ATAATAATTTTGAAGCACAT+GGG - chr8_3:64500794-64500813 None:intergenic 20.0%
!!! AATATGCTCTTTTAACTATA+TGG + chr8_3:64501050-64501069 Msa1302120:intron 20.0%
!!! TGATTTCTTAAGTTTTATCT+AGG + chr8_3:64501243-64501262 Msa1302120:intron 20.0%
!!! GATTTCTTAAGTTTTATCTA+GGG + chr8_3:64501244-64501263 Msa1302120:intron 20.0%
!! AAATAATCTATGAAGTATGT+TGG + chr8_3:64501531-64501550 Msa1302120:intron 20.0%
!!! TTTGCTTTAAATGATATTTG+TGG + chr8_3:64502142-64502161 Msa1302120:intron 20.0%
!!! TAATGTTAGGTATACTTTTT+TGG + chr8_3:64502216-64502235 Msa1302120:intron 20.0%
!! ATATAGAATTTGGAAATAAG+GGG - chr8_3:64502620-64502639 None:intergenic 20.0%
!! CATATAGAATTTGGAAATAA+GGG - chr8_3:64502621-64502640 None:intergenic 20.0%
!!! CATTTTAAGCATATAGAATT+TGG - chr8_3:64502630-64502649 None:intergenic 20.0%
!! TTATATGCAACATAATGTAA+AGG - chr8_3:64502658-64502677 None:intergenic 20.0%
!! ATTTGGATAATCTTATCAAA+TGG - chr8_3:64502711-64502730 None:intergenic 20.0%
!! TTTGAATTCAATTATATAGC+TGG + chr8_3:64502997-64503016 Msa1302120:intron 20.0%
!! TAAAACATTGGTATTTAGTT+TGG + chr8_3:64503160-64503179 Msa1302120:intron 20.0%
!!! TATTTTTGTTTTGATTTTGC+AGG + chr8_3:64503291-64503310 Msa1302120:intron 20.0%
!! TGTAATTCATCAAATATACT+TGG + chr8_3:64503830-64503849 Msa1302120:three_prime_UTR 20.0%
!!! AGGTTTTAAGGTTTTGTTTT+TGG - chr8_3:64500048-64500067 None:intergenic 25.0%
! CTAGATGAATTCAAGTATAT+TGG + chr8_3:64500518-64500537 Msa1302120:intron 25.0%
! TTGGATAAATTATGTGATCT+TGG + chr8_3:64500537-64500556 Msa1302120:intron 25.0%
! TAAATTATGTGATCTTGGTT+TGG + chr8_3:64500542-64500561 Msa1302120:intron 25.0%
!!! GTCTTTTTTGAGAGAATTAT+TGG + chr8_3:64500683-64500702 Msa1302120:intron 25.0%
!!! CATAATAATTTTGAAGCACA+TGG - chr8_3:64500795-64500814 None:intergenic 25.0%
! GTGAACTATATGCATATTAA+TGG - chr8_3:64500873-64500892 None:intergenic 25.0%
! GTCTATGATAGATTAAATAC+CGG + chr8_3:64500959-64500978 Msa1302120:intron 25.0%
! TCTATGATAGATTAAATACC+GGG + chr8_3:64500960-64500979 Msa1302120:intron 25.0%
! TAAATTACACATTATCGAGT+TGG + chr8_3:64501786-64501805 Msa1302120:intron 25.0%
!!! GAATTATTTTCGAGTTGATT+CGG + chr8_3:64501944-64501963 Msa1302120:intron 25.0%
! TGTGTAATCTGATAAAACTA+GGG - chr8_3:64501981-64502000 None:intergenic 25.0%
! TTCAAATAGTCACTAATGTT+AGG + chr8_3:64502203-64502222 Msa1302120:intron 25.0%
!! TTAAATGAGTCAAAGGTTTT+AGG - chr8_3:64502245-64502264 None:intergenic 25.0%
!!! GAACATAGAATGTTTTTACT+TGG + chr8_3:64502422-64502441 Msa1302120:CDS 25.0%
! GCATATAGAATTTGGAAATA+AGG - chr8_3:64502622-64502641 None:intergenic 25.0%
!! ATGATATTGTTTGACCTTTT+AGG + chr8_3:64502746-64502765 Msa1302120:intron 25.0%
!! TGATATTGTTTGACCTTTTA+GGG + chr8_3:64502747-64502766 Msa1302120:intron 25.0%
!! ATTTTCAAAGAATCCCTAAA+AGG - chr8_3:64502763-64502782 None:intergenic 25.0%
! AACATTATTAATACACAGAG+AGG - chr8_3:64502868-64502887 None:intergenic 25.0%
! TCTGTGTATTAATAATGTTC+TGG + chr8_3:64502869-64502888 Msa1302120:intron 25.0%
! ATCAAATTAGTGAGAAATAC+GGG - chr8_3:64503125-64503144 None:intergenic 25.0%
! CATCAAATTAGTGAGAAATA+CGG - chr8_3:64503126-64503145 None:intergenic 25.0%
! ATTTCTCACTAATTTGATGT+CGG + chr8_3:64503127-64503146 Msa1302120:intron 25.0%
!! TTCTGAACCTTCTAATTTTT+CGG + chr8_3:64503259-64503278 Msa1302120:intron 25.0%
! TTCATCAAATATACTTGGTT+TGG + chr8_3:64503835-64503854 Msa1302120:three_prime_UTR 25.0%
! TCATCAAATATACTTGGTTT+GGG + chr8_3:64503836-64503855 Msa1302120:three_prime_UTR 25.0%
! AGGGCAAGTAAAAATTATTA+AGG - chr8_3:64503866-64503885 None:intergenic 25.0%
!! TTTCAACTTTTCATTTCTCA+AGG + chr8_3:64503986-64504005 Msa1302120:three_prime_UTR 25.0%
!! CTTTTTGACAACACTTAAAT+AGG - chr8_3:64504059-64504078 None:intergenic 25.0%
TAGAAGTTGAGTATAGTGAT+TGG - chr8_3:64499804-64499823 None:intergenic 30.0%
TTTATCCACGACAAGATAAA+TGG + chr8_3:64499926-64499945 Msa1302120:five_prime_UTR 30.0%
TTCAATTTCATTTCATGCCT+CGG + chr8_3:64500067-64500086 Msa1302120:five_prime_UTR 30.0%
!!! ACAAACCCTTTTTTCTTTCA+CGG - chr8_3:64500421-64500440 None:intergenic 30.0%
TTTGCTTGCATGTGAATTAT+TGG + chr8_3:64500468-64500487 Msa1302120:intron 30.0%
!!! TTTTTGGTTGGTGTAATTGT+AGG + chr8_3:64500611-64500630 Msa1302120:intron 30.0%
! TTGAATGTTGGTCTAAGAAA+TGG + chr8_3:64500726-64500745 Msa1302120:intron 30.0%
!!! AACATTGTTTTTGAACCACA+TGG - chr8_3:64500770-64500789 None:intergenic 30.0%
TGTATTCTACTGCCTAATTA+TGG + chr8_3:64500837-64500856 Msa1302120:intron 30.0%
GTATTCTACTGCCTAATTAT+GGG + chr8_3:64500838-64500857 Msa1302120:intron 30.0%
TATTCTACTGCCTAATTATG+GGG + chr8_3:64500839-64500858 Msa1302120:intron 30.0%
!! GCTCTTTTAACTATATGGTT+CGG + chr8_3:64501055-64501074 Msa1302120:intron 30.0%
ATCATGACTGAAACAATCTT+TGG + chr8_3:64501129-64501148 Msa1302120:intron 30.0%
!!! CCTTTTTTTTAACTCGAGAT+CGG + chr8_3:64501362-64501381 Msa1302120:intron 30.0%
GATAAATGATTCGTTGAACT+TGG - chr8_3:64501912-64501931 None:intergenic 30.0%
GTGTGTAATCTGATAAAACT+AGG - chr8_3:64501982-64502001 None:intergenic 30.0%
! TGCACAGAGTATTAGATTTA+GGG - chr8_3:64502059-64502078 None:intergenic 30.0%
! TTGCACAGAGTATTAGATTT+AGG - chr8_3:64502060-64502079 None:intergenic 30.0%
! GTCTATCTAAAGTTTGATCT+AGG - chr8_3:64502119-64502138 None:intergenic 30.0%
!!! TGTTAGGTATACTTTTTTGG+AGG + chr8_3:64502219-64502238 Msa1302120:intron 30.0%
AACCTTTGACTCATTTAACT+AGG + chr8_3:64502247-64502266 Msa1302120:intron 30.0%
AACCTAGTTAAATGAGTCAA+AGG - chr8_3:64502252-64502271 None:intergenic 30.0%
TGACTCATTTAACTAGGTTT+CGG + chr8_3:64502253-64502272 Msa1302120:intron 30.0%
ACGCTCAAAAATATTTCATC+AGG + chr8_3:64502528-64502547 Msa1302120:CDS 30.0%
! CTTATCAAATGGTAATGAAC+AGG - chr8_3:64502700-64502719 None:intergenic 30.0%
! AAATGGACAATTTTCCCAAA+TGG - chr8_3:64502821-64502840 None:intergenic 30.0%
GTTAGATATTGATAGAACCA+TGG + chr8_3:64502891-64502910 Msa1302120:intron 30.0%
!!! TTTGGCAATGTTTTAATAGC+CGG + chr8_3:64502924-64502943 Msa1302120:intron 30.0%
AATTGAATTCAAACCAACCA+GGG - chr8_3:64502990-64503009 None:intergenic 30.0%
TAATTGAATTCAAACCAACC+AGG - chr8_3:64502991-64503010 None:intergenic 30.0%
AATTCAATTATATAGCTGGC+TGG + chr8_3:64503001-64503020 Msa1302120:intron 30.0%
TTTCTCACTAATTTGATGTC+GGG + chr8_3:64503128-64503147 Msa1302120:intron 30.0%
!!! GGGACTGATTTTTAAAACAT+TGG + chr8_3:64503148-64503167 Msa1302120:intron 30.0%
!! AACATTGGTATTTAGTTTGG+AGG + chr8_3:64503163-64503182 Msa1302120:intron 30.0%
! AAACATTGCATTTTCTGATG+TGG + chr8_3:64503188-64503207 Msa1302120:intron 30.0%
GAAAAATTAGAAGGTTCAGA+AGG - chr8_3:64503260-64503279 None:intergenic 30.0%
! TCTGAACCTTCTAATTTTTC+GGG + chr8_3:64503260-64503279 Msa1302120:intron 30.0%
AGAAATCCCGAAAAATTAGA+AGG - chr8_3:64503269-64503288 None:intergenic 30.0%
TAATATGCTGGATATACTAC+CGG - chr8_3:64503514-64503533 None:intergenic 30.0%
AAGAATGGAGAATAATATGC+TGG - chr8_3:64503526-64503545 None:intergenic 30.0%
ACTTCATGTGTTTCTTTCTT+AGG - chr8_3:64503595-64503614 None:intergenic 30.0%
TAAGAAAGAAACACATGAAG+TGG + chr8_3:64503594-64503613 Msa1302120:CDS 30.0%
TGAGCATTATTATCATGATG+TGG + chr8_3:64503802-64503821 Msa1302120:exon 30.0%
! AGTAGTATCTAGGATTTACT+TGG + chr8_3:64503928-64503947 Msa1302120:three_prime_UTR 30.0%
! GTAGTATCTAGGATTTACTT+GGG + chr8_3:64503929-64503948 Msa1302120:three_prime_UTR 30.0%
GTTTATTTATGACCGTGGAT+TGG - chr8_3:64499855-64499874 None:intergenic 35.0%
TGATCGTTTATTTATGACCG+TGG - chr8_3:64499860-64499879 None:intergenic 35.0%
ACTATCCATTTATCTTGTCG+TGG - chr8_3:64499934-64499953 None:intergenic 35.0%
GAGGCATGAAATGAAATTGA+AGG - chr8_3:64500068-64500087 None:intergenic 35.0%
! TTTGGAGTAAGATTAACCGA+TGG + chr8_3:64500230-64500249 Msa1302120:CDS 35.0%
TTGGAGTAAGATTAACCGAT+GGG + chr8_3:64500231-64500250 Msa1302120:CDS 35.0%
TACTTCCCGTGAAAGAAAAA+AGG + chr8_3:64500412-64500431 Msa1302120:CDS 35.0%
ACTTCCCGTGAAAGAAAAAA+GGG + chr8_3:64500413-64500432 Msa1302120:CDS 35.0%
!!! CAAACCCTTTTTTCTTTCAC+GGG - chr8_3:64500420-64500439 None:intergenic 35.0%
AATTCACATGCAAGCAAAAG+AGG - chr8_3:64500466-64500485 None:intergenic 35.0%
!! TATGTGATCTTGGTTTGGAT+TGG + chr8_3:64500547-64500566 Msa1302120:intron 35.0%
TAGGAGTAACTAGACAAGAA+AGG + chr8_3:64500630-64500649 Msa1302120:intron 35.0%
! TGTTGGTCTAAGAAATGGAT+AGG + chr8_3:64500731-64500750 Msa1302120:intron 35.0%
AATGGATAGGTATAAGTCTC+AGG + chr8_3:64500744-64500763 Msa1302120:intron 35.0%
ATTCTACTGCCTAATTATGG+GGG + chr8_3:64500840-64500859 Msa1302120:intron 35.0%
CTGTTTCAGCTATCTAAACT+AGG + chr8_3:64500892-64500911 Msa1302120:intron 35.0%
ACCTGGACAAAAATAAAGCT+TGG - chr8_3:64501155-64501174 None:intergenic 35.0%
! TTTTCTGTGTCTTGAACCTT+CGG - chr8_3:64501206-64501225 None:intergenic 35.0%
GGTTCAAGACACAGAAAAAA+TGG + chr8_3:64501208-64501227 Msa1302120:intron 35.0%
!! TCTTAAGTTTTATCTAGGGC+TGG + chr8_3:64501248-64501267 Msa1302120:intron 35.0%
CCGATCTCGAGTTAAAAAAA+AGG - chr8_3:64501365-64501384 None:intergenic 35.0%
TTTACAGTTCACGAACAACT+CGG + chr8_3:64501389-64501408 Msa1302120:intron 35.0%
TTGTACGGACAGTAGTAAAA+AGG - chr8_3:64501578-64501597 None:intergenic 35.0%
! AGTGCAGTGCATATTTTGTA+CGG - chr8_3:64501593-64501612 None:intergenic 35.0%
AGTTGAACTTGAACTGAGTA+TGG - chr8_3:64501834-64501853 None:intergenic 35.0%
TAATCTGATAAAACTAGGGC+TGG - chr8_3:64501977-64501996 None:intergenic 35.0%
ATTACACACAACCCTGAATA+GGG + chr8_3:64501993-64502012 Msa1302120:intron 35.0%
AAGAAATGTGACCCTATTCA+GGG - chr8_3:64502007-64502026 None:intergenic 35.0%
TAAGAAATGTGACCCTATTC+AGG - chr8_3:64502008-64502027 None:intergenic 35.0%
ACATTTCTTAAACGACGACA+TGG + chr8_3:64502018-64502037 Msa1302120:intron 35.0%
! GCACAGAGTATTAGATTTAG+GGG - chr8_3:64502058-64502077 None:intergenic 35.0%
CAAATTCAGCTAAACAGTAC+TGG - chr8_3:64502280-64502299 None:intergenic 35.0%
ACATTACAGTCAGCTTCAAT+GGG + chr8_3:64502317-64502336 Msa1302120:intron 35.0%
TTTACTTGGATTGAACAAGC+TGG + chr8_3:64502436-64502455 Msa1302120:CDS 35.0%
TTACTTGGATTGAACAAGCT+GGG + chr8_3:64502437-64502456 Msa1302120:CDS 35.0%
CCTTGATATAACATAGTTCC+TGG - chr8_3:64502486-64502505 None:intergenic 35.0%
CCAGGAACTATGTTATATCA+AGG + chr8_3:64502483-64502502 Msa1302120:CDS 35.0%
!! GAAATATTTTTGAGCGTGAC+TGG - chr8_3:64502525-64502544 None:intergenic 35.0%
CATCTGCAACAATATCAAAC+AGG - chr8_3:64502589-64502608 None:intergenic 35.0%
! ATGGTAATGAACAGGTTATG+TGG - chr8_3:64502692-64502711 None:intergenic 35.0%
! TGTCCATTTCCTGGATATTT+TGG + chr8_3:64502832-64502851 Msa1302120:intron 35.0%
CATCCAAAATATCCAGGAAA+TGG - chr8_3:64502838-64502857 None:intergenic 35.0%
CATCAACATCCAAAATATCC+AGG - chr8_3:64502844-64502863 None:intergenic 35.0%
TTAGAAGGTTCAGAAGGAAA+AGG - chr8_3:64503254-64503273 None:intergenic 35.0%
CAACTACAAACTGAAACAGA+AGG + chr8_3:64503358-64503377 Msa1302120:CDS 35.0%
! GTTTGAGTTTGTAGAATCCA+TGG - chr8_3:64503431-64503450 None:intergenic 35.0%
GATTCTACAAACTCAAACGA+TGG + chr8_3:64503433-64503452 Msa1302120:CDS 35.0%
AATATGCTGGATATACTACC+GGG - chr8_3:64503513-64503532 None:intergenic 35.0%
ACCAATATGGAAGAGGAAAA+GGG - chr8_3:64503549-64503568 None:intergenic 35.0%
CTGAGTTTAGGTGAAACTAT+TGG + chr8_3:64503682-64503701 Msa1302120:CDS 35.0%
TCTCGTAAACTACTTGAAGA+AGG + chr8_3:64503727-64503746 Msa1302120:CDS 35.0%
ACAAACTAGGTTAACCATTC+TGG - chr8_3:64503890-64503909 None:intergenic 35.0%
CAAGCAAACAAACACAAACT+AGG - chr8_3:64503903-64503922 None:intergenic 35.0%
GTTTGTGTTTGTTTGCTTGT+AGG + chr8_3:64503904-64503923 Msa1302120:three_prime_UTR 35.0%
! CTTAAATAGGAAGCACAACT+TGG - chr8_3:64504046-64504065 None:intergenic 35.0%
!! TTTATGACCGTGGATTGGTT+CGG - chr8_3:64499850-64499869 None:intergenic 40.0%
GGTAAAGATAAGATGCTACG+CGG - chr8_3:64499902-64499921 None:intergenic 40.0%
ATCTTGTCGTGGATAAAGAG+AGG - chr8_3:64499923-64499942 None:intergenic 40.0%
GTTGTGTTGTGTTGTGTTGT+TGG + chr8_3:64499954-64499973 Msa1302120:five_prime_UTR 40.0%
!!! GTTTTGAAGATCCGAATCAC+AGG - chr8_3:64500095-64500114 None:intergenic 40.0%
AACGAGAGAGGTGAATTATC+AGG - chr8_3:64500117-64500136 None:intergenic 40.0%
TCAAGAACTTGTCCAAATCG+TGG + chr8_3:64500197-64500216 Msa1302120:CDS 40.0%
TAAGATTAACCGATGGGATC+CGG + chr8_3:64500237-64500256 Msa1302120:CDS 40.0%
!! ATCCGGAAAAGTGCTAGTAT+GGG + chr8_3:64500254-64500273 Msa1302120:CDS 40.0%
! TACCCATACTAGCACTTTTC+CGG - chr8_3:64500259-64500278 None:intergenic 40.0%
GGTAATCTTAGCCACTATAG+CGG + chr8_3:64500275-64500294 Msa1302120:CDS 40.0%
GTAATCTTAGCCACTATAGC+GGG + chr8_3:64500276-64500295 Msa1302120:CDS 40.0%
ATAGATTAAATACCGGGCTG+TGG + chr8_3:64500966-64500985 Msa1302120:intron 40.0%
CAATGCTTGCAGATCATTAG+GGG - chr8_3:64501026-64501045 None:intergenic 40.0%
CCAATGCTTGCAGATCATTA+GGG - chr8_3:64501027-64501046 None:intergenic 40.0%
TTCAGTCATGATTCGAACTC+TGG - chr8_3:64501121-64501140 None:intergenic 40.0%
!!! GCCAAGCTTTATTTTTGTCC+AGG + chr8_3:64501151-64501170 Msa1302120:intron 40.0%
TTTCTGTGTCTTGAACCTTC+GGG - chr8_3:64501205-64501224 None:intergenic 40.0%
! CGACTCGATAAGATTTGGTT+CGG + chr8_3:64501310-64501329 Msa1302120:intron 40.0%
GGACAGTAGTAAAAAGGTAG+TGG - chr8_3:64501572-64501591 None:intergenic 40.0%
AAAAAATTAGTCCCACGTCG+GGG - chr8_3:64501652-64501671 None:intergenic 40.0%
CAAAAAATTAGTCCCACGTC+GGG - chr8_3:64501653-64501672 None:intergenic 40.0%
GCAAAAAATTAGTCCCACGT+CGG - chr8_3:64501654-64501673 None:intergenic 40.0%
CAACTCAAGTTCGACTCATT+TGG + chr8_3:64501878-64501897 Msa1302120:intron 40.0%
GATTACACACAACCCTGAAT+AGG + chr8_3:64501992-64502011 Msa1302120:intron 40.0%
! CAGAGTATTAGATTTAGGGG+AGG - chr8_3:64502055-64502074 None:intergenic 40.0%
CACATTACAGTCAGCTTCAA+TGG + chr8_3:64502316-64502335 Msa1302120:intron 40.0%
CATTACAGTCAGCTTCAATG+GGG + chr8_3:64502318-64502337 Msa1302120:intron 40.0%
!! TTTTATTTGCAGGCACTCCA+TGG + chr8_3:64502390-64502409 Msa1302120:intron 40.0%
TGCAACAATATCAAACAGGC+TGG - chr8_3:64502585-64502604 None:intergenic 40.0%
! TCACGACACTGTTTTCCATT+TGG + chr8_3:64502803-64502822 Msa1302120:intron 40.0%
! CACGACACTGTTTTCCATTT+GGG + chr8_3:64502804-64502823 Msa1302120:intron 40.0%
TGGGAAAATTGTCCATTTCC+TGG + chr8_3:64502823-64502842 Msa1302120:intron 40.0%
TATTGATAGAACCATGGCTC+TGG + chr8_3:64502897-64502916 Msa1302120:intron 40.0%
ATTGATAGAACCATGGCTCT+GGG + chr8_3:64502898-64502917 Msa1302120:intron 40.0%
TTAGTGAGAAATACGGGTCA+TGG - chr8_3:64503119-64503138 None:intergenic 40.0%
TTAGCTGACAAGAAGTCTTG+CGG - chr8_3:64503337-64503356 None:intergenic 40.0%
! ATTGATGTCGGGCTTTAATG+GGG - chr8_3:64503473-64503492 None:intergenic 40.0%
! CATTGATGTCGGGCTTTAAT+GGG - chr8_3:64503474-64503493 None:intergenic 40.0%
! TCCCTTTTCCTCTTCCATAT+TGG + chr8_3:64503545-64503564 Msa1302120:CDS 40.0%
GACCAATATGGAAGAGGAAA+AGG - chr8_3:64503550-64503569 None:intergenic 40.0%
TTTCCTCTTCCATATTGGTC+TGG + chr8_3:64503550-64503569 Msa1302120:CDS 40.0%
TATCCAGACCAATATGGAAG+AGG - chr8_3:64503556-64503575 None:intergenic 40.0%
TGTGTTTCTTTCTTAGGAGC+TGG - chr8_3:64503589-64503608 None:intergenic 40.0%
! CGAGTTCATCGACATTGATT+GGG - chr8_3:64503648-64503667 None:intergenic 40.0%
ACGAGTTCATCGACATTGAT+TGG - chr8_3:64503649-64503668 None:intergenic 40.0%
ATCAATGTCGATGAACTCGT+TGG + chr8_3:64503649-64503668 Msa1302120:CDS 40.0%
GGCATGTCAAAACTGAGTTT+AGG + chr8_3:64503670-64503689 Msa1302120:CDS 40.0%
! GGTGAAACTATTGGTGATAC+TGG + chr8_3:64503691-64503710 Msa1302120:CDS 40.0%
TTTCATACAACTCCAGCTTG+TGG + chr8_3:64503769-64503788 Msa1302120:CDS 40.0%
TTCATACAACTCCAGCTTGT+GGG + chr8_3:64503770-64503789 Msa1302120:CDS 40.0%
! TTTTACTTGCCCTTCCAGAA+TGG + chr8_3:64503873-64503892 Msa1302120:three_prime_UTR 40.0%
! CTAGGTTAACCATTCTGGAA+GGG - chr8_3:64503885-64503904 None:intergenic 40.0%
ACTAGGTTAACCATTCTGGA+AGG - chr8_3:64503886-64503905 None:intergenic 40.0%
ACAATCTCCGAACCAATCCA+CGG + chr8_3:64499840-64499859 Msa1302120:five_prime_UTR 45.0%
!! ATGTTTGGTTTGGTCTCCCT+CGG - chr8_3:64500012-64500031 None:intergenic 45.0%
ACGGGTCATGATTTCTGAAC+CGG - chr8_3:64500144-64500163 None:intergenic 45.0%
TGTTCTCATTGCAGCCACAA+TGG + chr8_3:64500167-64500186 Msa1302120:CDS 45.0%
GTTCTCATTGCAGCCACAAT+GGG + chr8_3:64500168-64500187 Msa1302120:CDS 45.0%
! TTCTTGAGTTGTGCCCATTG+TGG - chr8_3:64500184-64500203 None:intergenic 45.0%
AACAGCTTCACACCACGATT+TGG - chr8_3:64500212-64500231 None:intergenic 45.0%
AATCGTGGTGTGAAGCTGTT+TGG + chr8_3:64500212-64500231 Msa1302120:CDS 45.0%
!! GATCCGGAAAAGTGCTAGTA+TGG + chr8_3:64500253-64500272 Msa1302120:CDS 45.0%
GGTATTCAAAAGTCCAGACC+CGG - chr8_3:64500303-64500322 None:intergenic 45.0%
! GGGTCTGGACTTTTGAATAC+CGG + chr8_3:64500302-64500321 Msa1302120:CDS 45.0%
! GGTCTGGACTTTTGAATACC+GGG + chr8_3:64500303-64500322 Msa1302120:CDS 45.0%
AATACCGGGTCAAATACTCC+TGG + chr8_3:64500317-64500336 Msa1302120:CDS 45.0%
!! TGAACCAGGAGTATTTGACC+CGG - chr8_3:64500324-64500343 None:intergenic 45.0%
TCAAATACTCCTGGTTCACC+TGG + chr8_3:64500326-64500345 Msa1302120:CDS 45.0%
AACCATCAGCACCATGATCA+GGG - chr8_3:64500358-64500377 None:intergenic 45.0%
TAACCATCAGCACCATGATC+AGG - chr8_3:64500359-64500378 None:intergenic 45.0%
!! GATCATGGTGCTGATGGTTA+TGG + chr8_3:64500359-64500378 Msa1302120:CDS 45.0%
! TGCTGATGGTTATGGTTCTG+AGG + chr8_3:64500367-64500386 Msa1302120:CDS 45.0%
!!! GGTTCTGAGGATTTTGTTCC+TGG + chr8_3:64500380-64500399 Msa1302120:CDS 45.0%
CCCTAATGATCTGCAAGCAT+TGG + chr8_3:64501024-64501043 Msa1302120:intron 45.0%
GCCAATGCTTGCAGATCATT+AGG - chr8_3:64501028-64501047 None:intergenic 45.0%
! ACTATATGGTTCGGCTCAAG+TGG + chr8_3:64501064-64501083 Msa1302120:intron 45.0%
! TTTTTGTCCAGGTCGAACTC+TGG + chr8_3:64501162-64501181 Msa1302120:intron 45.0%
TGTCTTGAACCTTCGGGAAA+GGG - chr8_3:64501199-64501218 None:intergenic 45.0%
! CGACTCGACTCGATAAGATT+TGG + chr8_3:64501305-64501324 Msa1302120:intron 45.0%
! TGAGTATGGTTCGACTCGTT+TGG - chr8_3:64501820-64501839 None:intergenic 45.0%
TACTCACTCTTGGGAAGGAT+GGG - chr8_3:64502093-64502112 None:intergenic 45.0%
ATCCTTCCCAAGAGTGAGTA+GGG + chr8_3:64502093-64502112 Msa1302120:intron 45.0%
GTCAGCTTCAATGGGGATTA+CGG + chr8_3:64502325-64502344 Msa1302120:intron 45.0%
ATCAAGGACACCTACTCAAG+TGG + chr8_3:64502499-64502518 Msa1302120:CDS 45.0%
TCAGGCAAAGCAATGTGTCT+AGG + chr8_3:64502546-64502565 Msa1302120:CDS 45.0%
! TTGATAGAACCATGGCTCTG+GGG + chr8_3:64502899-64502918 Msa1302120:intron 45.0%
AAACCAACCAGGGAACTAGT+TGG - chr8_3:64502980-64502999 None:intergenic 45.0%
AAAAACGGTTGAACCAGCCA+TGG - chr8_3:64503043-64503062 None:intergenic 45.0%
CAGAAGGAAAAGGAAAAGCG+AGG - chr8_3:64503244-64503263 None:intergenic 45.0%
! TGCGGTACCATTGAAGTATC+AGG - chr8_3:64503319-64503338 None:intergenic 45.0%
TCACATTCTTCATCGAGTGG+AGG - chr8_3:64503406-64503425 None:intergenic 45.0%
GACTCACATTCTTCATCGAG+TGG - chr8_3:64503409-64503428 None:intergenic 45.0%
CGATGAAGAATGTGAGTCCA+TGG + chr8_3:64503411-64503430 Msa1302120:CDS 45.0%
! GCATTGATGTCGGGCTTTAA+TGG - chr8_3:64503475-64503494 None:intergenic 45.0%
GGAAGAGGAAAAGGGAAGAA+TGG - chr8_3:64503541-64503560 None:intergenic 45.0%
GGACTGTATCCAGACCAATA+TGG - chr8_3:64503562-64503581 None:intergenic 45.0%
TTGGGCTCTTGGAATGTACT+GGG - chr8_3:64503630-64503649 None:intergenic 45.0%
ATTGGGCTCTTGGAATGTAC+TGG - chr8_3:64503631-64503650 None:intergenic 45.0%
! ATCGACATTGATTGGGCTCT+TGG - chr8_3:64503641-64503660 None:intergenic 45.0%
AGTTTACGAGACAGAGTCGA+GGG - chr8_3:64503718-64503737 None:intergenic 45.0%
TAGTTTACGAGACAGAGTCG+AGG - chr8_3:64503719-64503738 None:intergenic 45.0%
AGAAGGTCCTTCTAGACAGT+CGG + chr8_3:64503744-64503763 Msa1302120:CDS 45.0%
TGAAAAGCCGACTGTCTAGA+AGG - chr8_3:64503754-64503773 None:intergenic 45.0%
GCTTGTAGGCAGTAGTATCT+AGG + chr8_3:64503918-64503937 Msa1302120:three_prime_UTR 45.0%
!!! AATATTATATTTTTGATTTT+TGG + chr8_3:64500595-64500614 Msa1302120:intron 5.0%
!!! TTTTTGTTATATATATATAT+AGG + chr8_3:64501485-64501504 Msa1302120:intron 5.0%
! TGGTTCGGAGATTGTTGACG+TGG - chr8_3:64499835-64499854 None:intergenic 50.0%
!! TGTTTGGTTTGGTCTCCCTC+GGG - chr8_3:64500011-64500030 None:intergenic 50.0%
ATGCCTCGGATCCTGTGATT+CGG + chr8_3:64500081-64500100 Msa1302120:five_prime_UTR 50.0%
TTCACCTCTCTCGTTCGATC+CGG + chr8_3:64500122-64500141 Msa1302120:five_prime_UTR 50.0%
GCTGCAATGAGAACAACGAC+GGG - chr8_3:64500162-64500181 None:intergenic 50.0%
GGCTGCAATGAGAACAACGA+CGG - chr8_3:64500163-64500182 None:intergenic 50.0%
! AGCACTTTTCCGGATCCCAT+CGG - chr8_3:64500249-64500268 None:intergenic 50.0%
! CCATGATCAGGGTTTTCACC+AGG - chr8_3:64500347-64500366 None:intergenic 50.0%
CCTGGTGAAAACCCTGATCA+TGG + chr8_3:64500344-64500363 Msa1302120:CDS 50.0%
! AACCCTGATCATGGTGCTGA+TGG + chr8_3:64500353-64500372 Msa1302120:CDS 50.0%
CGGGAAGTAGAAGAAGAACC+AGG - chr8_3:64500401-64500420 None:intergenic 50.0%
GGTATAAGTCTCAGGCCATG+TGG + chr8_3:64500752-64500771 Msa1302120:intron 50.0%
CTGCCTAATTATGGGGGATG+AGG + chr8_3:64500846-64500865 Msa1302120:intron 50.0%
GGACCTCATCCCCCATAATT+AGG - chr8_3:64500852-64500871 None:intergenic 50.0%
ATTAAATACCGGGCTGTGGC+AGG + chr8_3:64500970-64500989 Msa1302120:intron 50.0%
GGGGTGAAACAAGCTAGACA+AGG - chr8_3:64501007-64501026 None:intergenic 50.0%
CAGGTCGAACTCTGGATTAC+CGG + chr8_3:64501170-64501189 Msa1302120:intron 50.0%
GTGTCTTGAACCTTCGGGAA+AGG - chr8_3:64501200-64501219 None:intergenic 50.0%
GAGCTCAGACAGGTTTGACT+CGG - chr8_3:64501286-64501305 None:intergenic 50.0%
! ACAACTCGGTTCGACTCGTT+AGG + chr8_3:64501403-64501422 Msa1302120:intron 50.0%
ATTTCCAAATCTCCCCGACG+TGG + chr8_3:64501637-64501656 Msa1302120:intron 50.0%
TTTCCAAATCTCCCCGACGT+GGG + chr8_3:64501638-64501657 Msa1302120:intron 50.0%
CTACTCACTCTTGGGAAGGA+TGG - chr8_3:64502094-64502113 None:intergenic 50.0%
CATCCTTCCCAAGAGTGAGT+AGG + chr8_3:64502092-64502111 Msa1302120:intron 50.0%
TCTAGGCCCTACTCACTCTT+GGG - chr8_3:64502102-64502121 None:intergenic 50.0%
ATCTAGGCCCTACTCACTCT+TGG - chr8_3:64502103-64502122 None:intergenic 50.0%
CTATGTTCCTCCTCAGTCCA+TGG - chr8_3:64502410-64502429 None:intergenic 50.0%
GGATTGAACAAGCTGGGCAA+AGG + chr8_3:64502443-64502462 Msa1302120:CDS 50.0%
ACAAGCTGGGCAAAGGTGAT+TGG + chr8_3:64502450-64502469 Msa1302120:CDS 50.0%
GGCAAAGCAATGTGTCTAGG+CGG + chr8_3:64502549-64502568 Msa1302120:CDS 50.0%
ATGTGTCTAGGCGGAAGAGA+CGG + chr8_3:64502558-64502577 Msa1302120:CDS 50.0%
!! AACCATGGCTCTGGGGTATT+TGG + chr8_3:64502906-64502925 Msa1302120:intron 50.0%
! GGAACTAGTTGGTTCCCTCT+CGG - chr8_3:64502969-64502988 None:intergenic 50.0%
GAACCAACTAGTTCCCTGGT+TGG + chr8_3:64502974-64502993 Msa1302120:intron 50.0%
GTTGAACCGCAGTTCAACCA+TGG + chr8_3:64503023-64503042 Msa1302120:intron 50.0%
AACCAGCCATGGTTGAACTG+CGG - chr8_3:64503032-64503051 None:intergenic 50.0%
GCAGGCACCTGATACTTCAA+TGG + chr8_3:64503309-64503328 Msa1302120:intron 50.0%
CATTCTTCATCGAGTGGAGG+AGG - chr8_3:64503403-64503422 None:intergenic 50.0%
! GACGCTTGTGCATTGATGTC+GGG - chr8_3:64503484-64503503 None:intergenic 50.0%
! CGACGCTTGTGCATTGATGT+CGG - chr8_3:64503485-64503504 None:intergenic 50.0%
CGACATCAATGCACAAGCGT+CGG + chr8_3:64503483-64503502 Msa1302120:CDS 50.0%
! TCTTTCTTAGGAGCTGGCTC+AGG - chr8_3:64503583-64503602 None:intergenic 50.0%
CTCTTGGAATGTACTGGGGT+TGG - chr8_3:64503625-64503644 None:intergenic 50.0%
TGGGCTCTTGGAATGTACTG+GGG - chr8_3:64503629-64503648 None:intergenic 50.0%
GTTTACGAGACAGAGTCGAG+GGG - chr8_3:64503717-64503736 None:intergenic 50.0%
GGAGATTGTTGACGTGGCAG+AGG - chr8_3:64499829-64499848 None:intergenic 55.0%
TCTGCAGCAGCAAAACCCGA+GGG + chr8_3:64499993-64500012 Msa1302120:five_prime_UTR 55.0%
GATCCGAATCACAGGATCCG+AGG - chr8_3:64500087-64500106 None:intergenic 55.0%
TGAACCGGATCGAACGAGAG+AGG - chr8_3:64500129-64500148 None:intergenic 55.0%
!! CTTAGCCACTATAGCGGGTC+CGG + chr8_3:64500281-64500300 Msa1302120:CDS 55.0%
!! TTAGCCACTATAGCGGGTCC+GGG + chr8_3:64500282-64500301 Msa1302120:CDS 55.0%
! GGGTTTTCACCAGGTGAACC+AGG - chr8_3:64500338-64500357 None:intergenic 55.0%
CGGTAATCCAGAGTTCGACC+TGG - chr8_3:64501172-64501191 None:intergenic 55.0%
GTCGAACTCTGGATTACCGG+AGG + chr8_3:64501173-64501192 Msa1302120:intron 55.0%
CACTCTTGGGAAGGATGGGA+AGG - chr8_3:64502089-64502108 None:intergenic 55.0%
GTGATTGGCGTGGAATTGCC+AGG + chr8_3:64502465-64502484 Msa1302120:CDS 55.0%
TGCCAAATACCCCAGAGCCA+TGG - chr8_3:64502911-64502930 None:intergenic 55.0%
AATAGCCGGACCGAACCAAC+CGG + chr8_3:64502938-64502957 Msa1302120:intron 55.0%
GAGGGAACCAACTAGTTCCC+TGG + chr8_3:64502970-64502989 Msa1302120:intron 55.0%
AACCGCAGTTCAACCATGGC+TGG + chr8_3:64503027-64503046 Msa1302120:intron 55.0%
CACAGAACAGTCCCACAAGC+TGG - chr8_3:64503784-64503803 None:intergenic 55.0%
CTCTGCAGCAGCAAAACCCG+AGG + chr8_3:64499992-64500011 Msa1302120:five_prime_UTR 60.0%
GTCAAACACCTGCCACAGCC+CGG - chr8_3:64500981-64501000 None:intergenic 60.0%
AACCTTCGGGAAAGGGCCTC+CGG - chr8_3:64501192-64501211 None:intergenic 60.0%
GAGTCGAGTCGAGCTCAGAC+AGG - chr8_3:64501296-64501315 None:intergenic 60.0%
AGTCCCACGTCGGGGAGATT+TGG - chr8_3:64501644-64501663 None:intergenic 60.0%
GGCCCTACTCACTCTTGGGA+AGG - chr8_3:64502098-64502117 None:intergenic 60.0%
! TGCAGGCACTCCATGGACTG+AGG + chr8_3:64502397-64502416 Msa1302120:intron 60.0%
! AGGCACTCCATGGACTGAGG+AGG + chr8_3:64502400-64502419 Msa1302120:intron 60.0%
CTGGGCAAAGGTGATTGGCG+TGG + chr8_3:64502455-64502474 Msa1302120:CDS 60.0%
! GCGTGACTGGCCACTTGAGT+AGG - chr8_3:64502512-64502531 None:intergenic 60.0%
!! CACAACCGGTTGGTTCGGTC+CGG - chr8_3:64502946-64502965 None:intergenic 60.0%
! CTCGGCACAACCGGTTGGTT+CGG - chr8_3:64502951-64502970 None:intergenic 60.0%
AACCAACCGGTTGTGCCGAG+AGG + chr8_3:64502951-64502970 Msa1302120:intron 60.0%
ACCAACCGGTTGTGCCGAGA+GGG + chr8_3:64502952-64502971 Msa1302120:intron 60.0%
TGGTTCCCTCTCGGCACAAC+CGG - chr8_3:64502960-64502979 None:intergenic 60.0%
GTGGAGGAGGAGCAGGCAAA+GGG - chr8_3:64503390-64503409 None:intergenic 60.0%
AGTGGAGGAGGAGCAGGCAA+AGG - chr8_3:64503391-64503410 None:intergenic 60.0%
TCATCGAGTGGAGGAGGAGC+AGG - chr8_3:64503397-64503416 None:intergenic 60.0%
! GTCGGGCTTTAATGGGGCAG+AGG - chr8_3:64503467-64503486 None:intergenic 60.0%
!! TGCACAAGCGTCGGCTTACC+CGG + chr8_3:64503492-64503511 Msa1302120:CDS 60.0%
CAGACCCGGACCCGCTATAG+TGG - chr8_3:64500289-64500308 None:intergenic 65.0%
!! CACTATAGCGGGTCCGGGTC+TGG + chr8_3:64500287-64500306 Msa1302120:CDS 65.0%
TACCGGAGGCCCTTTCCCGA+AGG + chr8_3:64501187-64501206 Msa1302120:intron 65.0%
TCCCTCTCGGCACAACCGGT+TGG - chr8_3:64502956-64502975 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 64499794 64504104 64499794 ID=Msa1302120;Name=Msa1302120
chr8_3 mRNA 64499794 64504104 64499794 ID=Msa1302120-mRNA-1;Parent=Msa1302120;Name=Msa1302120-mRNA-1;_AED=0.16;_eAED=0.16;_QI=361|1|1|1|1|1|3|300|326
chr8_3 exon 64499794 64500434 64499794 ID=Msa1302120-mRNA-1:exon:19484;Parent=Msa1302120-mRNA-1
chr8_3 exon 64502402 64502610 64502402 ID=Msa1302120-mRNA-1:exon:19485;Parent=Msa1302120-mRNA-1
chr8_3 exon 64503313 64504104 64503313 ID=Msa1302120-mRNA-1:exon:19486;Parent=Msa1302120-mRNA-1
chr8_3 five_prime_UTR 64499794 64500154 64499794 ID=Msa1302120-mRNA-1:five_prime_utr;Parent=Msa1302120-mRNA-1
chr8_3 CDS 64500155 64500434 64500155 ID=Msa1302120-mRNA-1:cds;Parent=Msa1302120-mRNA-1
chr8_3 CDS 64502402 64502610 64502402 ID=Msa1302120-mRNA-1:cds;Parent=Msa1302120-mRNA-1
chr8_3 CDS 64503313 64503804 64503313 ID=Msa1302120-mRNA-1:cds;Parent=Msa1302120-mRNA-1
chr8_3 three_prime_UTR 64503805 64504104 64503805 ID=Msa1302120-mRNA-1:three_prime_utr;Parent=Msa1302120-mRNA-1
Gene Sequence

>Msa1302120

ATGACCCGTCGTTGTTCTCATTGCAGCCACAATGGGCACAACTCAAGAACTTGTCCAAATCGTGGTGTGAAGCTGTTTGGAGTAAGATTAACCGATGGGATCCGGAAAAGTGCTAGTATGGGTAATCTTAGCCACTATAGCGGGTCCGGGTCTGGACTTTTGAATACCGGGTCAAATACTCCTGGTTCACCTGGTGAAAACCCTGATCATGGTGCTGATGGTTATGGTTCTGAGGATTTTGTTCCTGGTTCTTCTTCTACTTCCCGTGAAAGAAAAAAGGGCACTCCATGGACTGAGGAGGAACATAGAATGTTTTTACTTGGATTGAACAAGCTGGGCAAAGGTGATTGGCGTGGAATTGCCAGGAACTATGTTATATCAAGGACACCTACTCAAGTGGCCAGTCACGCTCAAAAATATTTCATCAGGCAAAGCAATGTGTCTAGGCGGAAGAGACGGTCCAGCCTGTTTGATATTGTTGCAGATGATGCACCTGATACTTCAATGGTACCGCAAGACTTCTTGTCAGCTAATCAACTACAAACTGAAACAGAAGGCAATAACCCTTTGCCTGCTCCTCCTCCACTCGATGAAGAATGTGAGTCCATGGATTCTACAAACTCAAACGATGGAGAGTCTGCCTCTGCCCCATTAAAGCCCGACATCAATGCACAAGCGTCGGCTTACCCGGTAGTATATCCAGCATATTATTCTCCATTCTTCCCTTTTCCTCTTCCATATTGGTCTGGATACAGTCCTGAGCCAGCTCCTAAGAAAGAAACACATGAAGTGGTGAAGCCAACCCCAGTACATTCCAAGAGCCCAATCAATGTCGATGAACTCGTTGGCATGTCAAAACTGAGTTTAGGTGAAACTATTGGTGATACTGGCCCCTCGACTCTGTCTCGTAAACTACTTGAAGAAGGTCCTTCTAGACAGTCGGCTTTTCATACAACTCCAGCTTGTGGGACTGTTCTGTGA
Protein sequence

>Msa1302120

MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGIRKSASMGNLSHYSGSGSGLLNTGSNTPGSPGENPDHGADGYGSEDFVPGSSSTSRERKKGTPWTEEEHRMFLLGLNKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADDAPDTSMVPQDFLSANQLQTETEGNNPLPAPPPLDEECESMDSTNSNDGESASAPLKPDINAQASAYPVVYPAYYSPFFPFPLPYWSGYSPEPAPKKETHEVVKPTPVHSKSPINVDELVGMSKLSLGETIGDTGPSTLSRKLLEEGPSRQSAFHTTPACGTVL*