AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1207000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1207000 MtrunA17_Chr4g0055931 99.387 326 2 0 1 326 1 326 0.0 669
Msa1207000 MtrunA17_Chr2g0331031 51.744 344 139 11 1 323 1 338 2.52e-97 291
Msa1207000 MtrunA17_Chr5g0415191 48.768 203 65 5 1 183 3 186 1.98e-48 164
Msa1207000 MtrunA17_Chr6g0488471 47.568 185 75 4 1 173 1 175 7.88e-46 157
Msa1207000 MtrunA17_Chr8g0389241 48.889 180 70 6 3 167 4 176 3.00e-42 147
Msa1207000 MtrunA17_Chr4g0059701 54.902 153 58 5 15 162 5 151 2.36e-36 132
Msa1207000 MtrunA17_Chr1g0210471 52.800 125 43 2 49 173 93 201 2.14e-35 128
Msa1207000 MtrunA17_Chr3g0135671 41.622 185 94 4 1 180 3 178 2.96e-34 125
Msa1207000 MtrunA17_Chr4g0062741 58.654 104 36 1 89 192 132 228 1.68e-33 125
Msa1207000 MtrunA17_Chr3g0104071 60.000 100 38 1 71 168 121 220 2.93e-32 122
Msa1207000 MtrunA17_Chr1g0162081 47.727 132 57 2 37 168 76 195 1.51e-31 120
Msa1207000 MtrunA17_Chr5g0429521 73.239 71 19 0 89 159 126 196 4.19e-31 119
Msa1207000 MtrunA17_Chr7g0241761 66.667 81 27 0 87 167 132 212 4.77e-31 119
Msa1207000 MtrunA17_Chr3g0092621 67.647 68 22 0 95 162 84 151 4.77e-28 107
Msa1207000 MtrunA17_Chr5g0436501 64.198 81 27 1 90 168 120 200 7.48e-28 109
Msa1207000 MtrunA17_Chr5g0409841 36.111 144 86 3 47 184 42 185 6.05e-23 95.1
Msa1207000 MtrunA17_Chr6g0452791 47.368 95 42 1 96 190 81 167 1.69e-20 87.0
Msa1207000 MtrunA17_Chr5g0440731 40.678 118 58 4 47 158 60 171 5.61e-20 88.6
Msa1207000 MtrunA17_Chr5g0440741 41.379 116 55 5 47 158 60 166 1.33e-19 87.4
Msa1207000 MtrunA17_Chr5g0409831 47.368 76 39 1 68 142 49 124 3.32e-18 82.0
Msa1207000 MtrunA17_Chr1g0192061 36.719 128 65 5 43 157 1 125 2.73e-15 73.2
Msa1207000 MtrunA17_Chr8g0365011 41.237 97 37 3 92 168 83 179 3.09e-15 74.7
Msa1207000 MtrunA17_Chr8g0364731 58.621 58 22 1 104 159 10 67 6.94e-15 72.0
Msa1207000 MtrunA17_Chr5g0432921 39.583 96 43 4 76 157 83 177 2.45e-12 65.5
Msa1207000 MtrunA17_Chr3g0113121 35.088 114 62 3 97 201 97 207 2.20e-11 62.8
Msa1207000 MtrunA17_Chr8g0370121 28.244 131 89 2 92 220 97 224 4.91e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1207000 AT5G47390.1 63.277 354 95 10 1 321 1 352 1.58e-135 389
Msa1207000 AT3G16350.1 45.288 382 131 15 1 318 1 368 4.74e-71 226
Msa1207000 AT5G61620.1 50.267 187 71 5 1 173 8 186 1.52e-49 168
Msa1207000 AT1G70000.1 50.244 205 59 7 1 185 1 182 2.39e-48 163
Msa1207000 AT1G70000.2 50.244 205 59 7 1 185 1 182 2.39e-48 163
Msa1207000 AT5G56840.1 44.751 181 57 6 1 161 1 158 2.82e-39 139
Msa1207000 AT2G38090.1 71.795 78 22 0 90 167 136 213 2.51e-33 125
Msa1207000 AT1G74840.2 52.667 150 55 5 21 162 22 163 4.71e-33 122
Msa1207000 AT1G19000.2 45.128 195 89 4 5 191 4 188 5.95e-33 123
Msa1207000 AT1G19000.1 45.128 195 89 4 5 191 4 188 5.95e-33 123
Msa1207000 AT1G74840.1 52.667 150 55 5 21 162 22 163 7.76e-33 122
Msa1207000 AT5G08520.1 52.336 107 51 0 62 168 85 191 8.76e-33 123
Msa1207000 AT1G49010.1 68.293 82 24 1 89 168 128 209 1.15e-32 123
Msa1207000 AT5G04760.1 62.195 82 31 0 83 164 87 168 1.23e-31 118
Msa1207000 AT5G58900.1 72.857 70 19 0 90 159 136 205 5.34e-31 118
Msa1207000 AT3G11280.2 55.000 100 45 0 60 159 92 191 8.52e-29 112
Msa1207000 AT3G11280.1 55.000 100 45 0 60 159 92 191 8.52e-29 112
Msa1207000 AT5G01200.1 63.636 77 28 0 89 165 140 216 3.38e-28 110
Msa1207000 AT5G05790.2 63.636 77 28 0 83 159 119 195 1.26e-26 106
Msa1207000 AT5G05790.1 63.636 77 28 0 83 159 119 195 1.26e-26 106
Msa1207000 AT3G10580.2 48.039 102 51 1 68 169 68 167 8.12e-24 98.6
Msa1207000 AT3G10580.1 48.039 102 51 1 68 169 68 167 1.29e-23 98.6
Msa1207000 AT4G09450.1 48.515 101 46 2 75 169 68 168 6.13e-22 92.0
Msa1207000 AT5G23650.1 51.948 77 37 0 83 159 108 184 1.53e-20 90.9
Msa1207000 AT3G10590.1 48.276 87 41 3 79 162 92 177 3.53e-18 82.0

Find 143 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCATGTGTTTCTTTCTT+AGG 0.230059 8_1:-64377791 None:intergenic
TTCATCAAATATACTTGGTT+TGG 0.266321 8_1:+64378034 Msa1207000:three_prime_UTR
TTTATCCACGACAAGATAAA+TGG 0.288105 8_1:+64374124 Msa1207000:five_prime_UTR
GTTTGTGTTTGTTTGCTTGT+AGG 0.301972 8_1:+64378103 Msa1207000:three_prime_UTR
ATCGACATTGATTGGGCTCT+TGG 0.306199 8_1:-64377837 None:intergenic
GATCCGGAAAAGTGCTAGTA+TGG 0.310152 8_1:+64374451 Msa1207000:CDS
GGTTTATTTGTATTTATGTT+TGG 0.320649 8_1:-64374222 None:intergenic
CATTGATGTCGGGCTTTAAT+GGG 0.332518 8_1:-64377670 None:intergenic
GCATTGATGTCGGGCTTTAA+TGG 0.338606 8_1:-64377671 None:intergenic
GTTGTGTTGTGTTGTGTTGT+TGG 0.344442 8_1:+64374152 Msa1207000:five_prime_UTR
AACAGCTTCACACCACGATT+TGG 0.346847 8_1:-64374407 None:intergenic
TCATCAAATATACTTGGTTT+GGG 0.349945 8_1:+64378035 Msa1207000:three_prime_UTR
ATTGGGCTCTTGGAATGTAC+TGG 0.350663 8_1:-64377827 None:intergenic
ATTTGTATTTATGTTTGGTT+TGG 0.350949 8_1:-64374217 None:intergenic
ACGAGTTCATCGACATTGAT+TGG 0.357821 8_1:-64377845 None:intergenic
CTCCCTGCATTTGTTACACT+GGG 0.361159 8_1:-64378293 None:intergenic
CACTATAGCGGGTCCGGGTC+TGG 0.363851 8_1:+64374485 Msa1207000:CDS
GGTGAAACTATTGGTGATAC+TGG 0.369014 8_1:+64377890 Msa1207000:CDS
TTTCCTCTTCCATATTGGTC+TGG 0.369873 8_1:+64377749 Msa1207000:CDS
AACGAGAGAGGTGAATTATC+AGG 0.373216 8_1:-64374312 None:intergenic
TGTGTTTCTTTCTTAGGAGC+TGG 0.373891 8_1:-64377785 None:intergenic
CCTTGATATAACATAGTTCC+TGG 0.379937 8_1:-64376682 None:intergenic
CCTCCCTGCATTTGTTACAC+TGG 0.381440 8_1:-64378294 None:intergenic
ATGTTTGGTTTGGTCTCCCT+CGG 0.397830 8_1:-64374207 None:intergenic
CTTAGCCACTATAGCGGGTC+CGG 0.398806 8_1:+64374479 Msa1207000:CDS
ACAAACTAGGTTAACCATTC+TGG 0.399924 8_1:-64378086 None:intergenic
TTCAATTTCATTTCATGCCT+CGG 0.409007 8_1:+64374265 Msa1207000:five_prime_UTR
GATCATGGTGCTGATGGTTA+TGG 0.418054 8_1:+64374557 Msa1207000:CDS
TAACCATCAGCACCATGATC+AGG 0.421312 8_1:-64374554 None:intergenic
TAGAAGTTGAGTATAGTGAT+TGG 0.425963 8_1:-64373999 None:intergenic
CTCTTGGAATGTACTGGGGT+TGG 0.426876 8_1:-64377821 None:intergenic
GCTTGTAGGCAGTAGTATCT+AGG 0.428846 8_1:+64378117 Msa1207000:three_prime_UTR
TTCATACAACTCCAGCTTGT+GGG 0.433206 8_1:+64377969 Msa1207000:CDS
TTGGGCTCTTGGAATGTACT+GGG 0.435041 8_1:-64377826 None:intergenic
GGAAGAGGAAAAGGGAAGAA+TGG 0.436557 8_1:-64377737 None:intergenic
AGTAGTATCTAGGATTTACT+TGG 0.439017 8_1:+64378127 Msa1207000:three_prime_UTR
GACCAATATGGAAGAGGAAA+AGG 0.441108 8_1:-64377746 None:intergenic
TGCGGTACCATTGAAGTATC+AGG 0.442348 8_1:-64377515 None:intergenic
CTGAGTTTAGGTGAAACTAT+TGG 0.449826 8_1:+64377881 Msa1207000:CDS
ACGGGTCATGATTTCTGAAC+CGG 0.452893 8_1:-64374339 None:intergenic
GCAGGCACCTGATACTTCAA+TGG 0.455907 8_1:+64377508 Msa1207000:intron
GACGCTTGTGCATTGATGTC+GGG 0.457053 8_1:-64377680 None:intergenic
ATGCCTCGGATCCTGTGATT+CGG 0.462408 8_1:+64374279 Msa1207000:five_prime_UTR
GGACTGTATCCAGACCAATA+TGG 0.463662 8_1:-64377758 None:intergenic
AATCGTGGTGTGAAGCTGTT+TGG 0.464828 8_1:+64374410 Msa1207000:CDS
CGAGTTCATCGACATTGATT+GGG 0.465415 8_1:-64377844 None:intergenic
CATCTGCAACAATATCAAAC+AGG 0.473584 8_1:-64376785 None:intergenic
TGTAATTCATCAAATATACT+TGG 0.476466 8_1:+64378029 Msa1207000:three_prime_UTR
TGCACAAGCGTCGGCTTACC+CGG 0.477679 8_1:+64377691 Msa1207000:CDS
TGAAAAGCCGACTGTCTAGA+AGG 0.477844 8_1:-64377950 None:intergenic
ACAAGCTGGGCAAAGGTGAT+TGG 0.481462 8_1:+64376649 Msa1207000:CDS
GTTCTCATTGCAGCCACAAT+GGG 0.482827 8_1:+64374366 Msa1207000:CDS
TCATCGAGTGGAGGAGGAGC+AGG 0.484781 8_1:-64377593 None:intergenic
TTCACCTCTCTCGTTCGATC+CGG 0.485313 8_1:+64374320 Msa1207000:five_prime_UTR
CTATGTTCCTCCTCAGTCCA+TGG 0.485937 8_1:-64376606 None:intergenic
GAGGCATGAAATGAAATTGA+AGG 0.488386 8_1:-64374263 None:intergenic
TTTATGACCGTGGATTGGTT+CGG 0.489533 8_1:-64374045 None:intergenic
GGCATGTCAAAACTGAGTTT+AGG 0.490022 8_1:+64377869 Msa1207000:CDS
TAAGATTAACCGATGGGATC+CGG 0.490318 8_1:+64374435 Msa1207000:CDS
TCTTTCTTAGGAGCTGGCTC+AGG 0.491218 8_1:-64377779 None:intergenic
AAGAATGGAGAATAATATGC+TGG 0.499540 8_1:-64377722 None:intergenic
GTTTGAGTTTGTAGAATCCA+TGG 0.503591 8_1:-64377627 None:intergenic
CGACGCTTGTGCATTGATGT+CGG 0.504753 8_1:-64377681 None:intergenic
GTGATTGGCGTGGAATTGCC+AGG 0.506530 8_1:+64376664 Msa1207000:CDS
CAGACCCGGACCCGCTATAG+TGG 0.508114 8_1:-64374484 None:intergenic
CTTAAATAGGAAGCACAACT+TGG 0.509265 8_1:-64378242 None:intergenic
CACAGAACAGTCCCACAAGC+TGG 0.510753 8_1:-64377980 None:intergenic
TTACTTGGATTGAACAAGCT+GGG 0.512315 8_1:+64376636 Msa1207000:CDS
CATTCTTCATCGAGTGGAGG+AGG 0.516097 8_1:-64377599 None:intergenic
ACCAATATGGAAGAGGAAAA+GGG 0.517539 8_1:-64377745 None:intergenic
GTTTATTTATGACCGTGGAT+TGG 0.521412 8_1:-64374050 None:intergenic
CCAGGAACTATGTTATATCA+AGG 0.521846 8_1:+64376682 Msa1207000:CDS
AGTGGAGGAGGAGCAGGCAA+AGG 0.525729 8_1:-64377587 None:intergenic
GGAGATTGTTGACGTGGCAG+AGG 0.526371 8_1:-64374024 None:intergenic
TTTACTTGGATTGAACAAGC+TGG 0.526943 8_1:+64376635 Msa1207000:CDS
TCAAATACTCCTGGTTCACC+TGG 0.529002 8_1:+64374524 Msa1207000:CDS
TAAGAAAGAAACACATGAAG+TGG 0.531198 8_1:+64377793 Msa1207000:CDS
CAAGCAAACAAACACAAACT+AGG 0.532269 8_1:-64378099 None:intergenic
TAATATGCTGGATATACTAC+CGG 0.533057 8_1:-64377710 None:intergenic
CGATGAAGAATGTGAGTCCA+TGG 0.537872 8_1:+64377610 Msa1207000:CDS
GTGGAGGAGGAGCAGGCAAA+GGG 0.545011 8_1:-64377586 None:intergenic
TGTTTGGTTTGGTCTCCCTC+GGG 0.548440 8_1:-64374206 None:intergenic
AACCCTGATCATGGTGCTGA+TGG 0.553194 8_1:+64374551 Msa1207000:CDS
GTAGTATCTAGGATTTACTT+GGG 0.553645 8_1:+64378128 Msa1207000:three_prime_UTR
GTCGGGCTTTAATGGGGCAG+AGG 0.557337 8_1:-64377663 None:intergenic
TGCAACAATATCAAACAGGC+TGG 0.557484 8_1:-64376781 None:intergenic
TGTTCTCATTGCAGCCACAA+TGG 0.558526 8_1:+64374365 Msa1207000:CDS
GGTAATCTTAGCCACTATAG+CGG 0.560908 8_1:+64374473 Msa1207000:CDS
TCTCGTAAACTACTTGAAGA+AGG 0.563354 8_1:+64377926 Msa1207000:CDS
GATTCTACAAACTCAAACGA+TGG 0.564664 8_1:+64377632 Msa1207000:CDS
TATCCAGACCAATATGGAAG+AGG 0.565662 8_1:-64377752 None:intergenic
TTAGCCACTATAGCGGGTCC+GGG 0.567360 8_1:+64374480 Msa1207000:CDS
TTTCATACAACTCCAGCTTG+TGG 0.570031 8_1:+64377968 Msa1207000:CDS
AGTTTACGAGACAGAGTCGA+GGG 0.572728 8_1:-64377914 None:intergenic
TCAGGCAAAGCAATGTGTCT+AGG 0.575738 8_1:+64376745 Msa1207000:CDS
AATACCGGGTCAAATACTCC+TGG 0.575888 8_1:+64374515 Msa1207000:CDS
TTGGAGTAAGATTAACCGAT+GGG 0.581339 8_1:+64374429 Msa1207000:CDS
ACTATCCATTTATCTTGTCG+TGG 0.585024 8_1:-64374129 None:intergenic
TGCTGATGGTTATGGTTCTG+AGG 0.588306 8_1:+64374565 Msa1207000:CDS
GGATTGAACAAGCTGGGCAA+AGG 0.588333 8_1:+64376642 Msa1207000:CDS
AACCATCAGCACCATGATCA+GGG 0.589650 8_1:-64374553 None:intergenic
TGGTTCGGAGATTGTTGACG+TGG 0.590211 8_1:-64374030 None:intergenic
CCTGGTGAAAACCCTGATCA+TGG 0.590290 8_1:+64374542 Msa1207000:CDS
TGATCGTTTATTTATGACCG+TGG 0.591106 8_1:-64374055 None:intergenic
GTAATCTTAGCCACTATAGC+GGG 0.591144 8_1:+64374474 Msa1207000:CDS
CGGGAAGTAGAAGAAGAACC+AGG 0.591204 8_1:-64374596 None:intergenic
ACTAGGTTAACCATTCTGGA+AGG 0.591528 8_1:-64378082 None:intergenic
CTCTGCAGCAGCAAAACCCG+AGG 0.598531 8_1:+64374190 Msa1207000:five_prime_UTR
ATCAATGTCGATGAACTCGT+TGG 0.598709 8_1:+64377848 Msa1207000:CDS
GACTCACATTCTTCATCGAG+TGG 0.599669 8_1:-64377605 None:intergenic
AGAAGGTCCTTCTAGACAGT+CGG 0.599702 8_1:+64377943 Msa1207000:CDS
CAACTACAAACTGAAACAGA+AGG 0.603118 8_1:+64377557 Msa1207000:CDS
ATTGATGTCGGGCTTTAATG+GGG 0.617600 8_1:-64377669 None:intergenic
ATCCGGAAAAGTGCTAGTAT+GGG 0.617740 8_1:+64374452 Msa1207000:CDS
TTCTTGAGTTGTGCCCATTG+TGG 0.619382 8_1:-64374379 None:intergenic
ATCTTGTCGTGGATAAAGAG+AGG 0.620375 8_1:-64374118 None:intergenic
ATCAAGGACACCTACTCAAG+TGG 0.620432 8_1:+64376698 Msa1207000:CDS
TGAACCGGATCGAACGAGAG+AGG 0.621078 8_1:-64374324 None:intergenic
GCTGCAATGAGAACAACGAC+GGG 0.624049 8_1:-64374357 None:intergenic
CGACATCAATGCACAAGCGT+CGG 0.624911 8_1:+64377682 Msa1207000:CDS
CTGGGCAAAGGTGATTGGCG+TGG 0.626265 8_1:+64376654 Msa1207000:CDS
GATCCGAATCACAGGATCCG+AGG 0.626517 8_1:-64374282 None:intergenic
CTAGGTTAACCATTCTGGAA+GGG 0.628075 8_1:-64378081 None:intergenic
TTTGGAGTAAGATTAACCGA+TGG 0.628079 8_1:+64374428 Msa1207000:CDS
ATGTGTCTAGGCGGAAGAGA+CGG 0.634804 8_1:+64376757 Msa1207000:CDS
AATATGCTGGATATACTACC+GGG 0.636844 8_1:-64377709 None:intergenic
TGGGCTCTTGGAATGTACTG+GGG 0.642523 8_1:-64377825 None:intergenic
GCGTGACTGGCCACTTGAGT+AGG 0.645270 8_1:-64376708 None:intergenic
GGCTGCAATGAGAACAACGA+CGG 0.647502 8_1:-64374358 None:intergenic
TTAGCTGACAAGAAGTCTTG+CGG 0.653600 8_1:-64377533 None:intergenic
TGCAGGCACTCCATGGACTG+AGG 0.655185 8_1:+64376596 Msa1207000:intron
GGTATTCAAAAGTCCAGACC+CGG 0.655952 8_1:-64374498 None:intergenic
ACAATCTCCGAACCAATCCA+CGG 0.660058 8_1:+64374038 Msa1207000:five_prime_UTR
TGAGCATTATTATCATGATG+TGG 0.662122 8_1:+64378001 Msa1207000:exon
TCAAGAACTTGTCCAAATCG+TGG 0.664250 8_1:+64374395 Msa1207000:CDS
TAGTTTACGAGACAGAGTCG+AGG 0.668337 8_1:-64377915 None:intergenic
TCACATTCTTCATCGAGTGG+AGG 0.671641 8_1:-64377602 None:intergenic
TCTGCAGCAGCAAAACCCGA+GGG 0.677080 8_1:+64374191 Msa1207000:five_prime_UTR
AGGCACTCCATGGACTGAGG+AGG 0.685831 8_1:+64376599 Msa1207000:intron
GGCAAAGCAATGTGTCTAGG+CGG 0.687559 8_1:+64376748 Msa1207000:CDS
TGAACCAGGAGTATTTGACC+CGG 0.708436 8_1:-64374519 None:intergenic
GTTTACGAGACAGAGTCGAG+GGG 0.738520 8_1:-64377913 None:intergenic
GGTAAAGATAAGATGCTACG+CGG 0.788761 8_1:-64374097 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTAGTTTCTTTTTAA+AGG - chr8_1:64375717-64375736 None:intergenic 10.0%
!!! ATTTTTAATATTTTATTTGC+AGG + chr8_1:64376579-64376598 Msa1207000:intron 10.0%
!!! GAAAAAGTATTAAAAAAAAA+CGG - chr8_1:64377257-64377276 None:intergenic 10.0%
!!! TTATATTTTTGATTTTTGGT+TGG + chr8_1:64374797-64374816 Msa1207000:intron 15.0%
!! ATTATTATGTTTGTTTAACT+TGG + chr8_1:64375004-64375023 Msa1207000:intron 15.0%
!!! CAATAATTTTAATAATAGAG+AGG - chr8_1:64375918-64375937 None:intergenic 15.0%
!!! AAATATCATTTAAAGCAAAA+AGG - chr8_1:64376340-64376359 None:intergenic 15.0%
!! ATTAAAGAAAAAAACACATT+TGG - chr8_1:64376927-64376946 None:intergenic 15.0%
!! ATTTGTATTTATGTTTGGTT+TGG - chr8_1:64374220-64374239 None:intergenic 20.0%
!! GGTTTATTTGTATTTATGTT+TGG - chr8_1:64374225-64374244 None:intergenic 20.0%
!!! AAATGAAATTGAAGGTTTTA+AGG - chr8_1:64374258-64374277 None:intergenic 20.0%
!!! ATCTGAAATATATTGAATGT+TGG + chr8_1:64374912-64374931 Msa1207000:intron 20.0%
!!! ATAATAATTTTGAAGCACAT+GGG - chr8_1:64374992-64375011 None:intergenic 20.0%
!!! AATATGCTCTTTTAACTATA+TGG + chr8_1:64375248-64375267 Msa1207000:intron 20.0%
!!! TGATTTCTTAAGTTTTATCT+AGG + chr8_1:64375441-64375460 Msa1207000:intron 20.0%
!!! GATTTCTTAAGTTTTATCTA+GGG + chr8_1:64375442-64375461 Msa1207000:intron 20.0%
!! AAATAATCTATGAAGTATGT+TGG + chr8_1:64375730-64375749 Msa1207000:intron 20.0%
!!! TTTGCTTTAAATGATATTTG+TGG + chr8_1:64376341-64376360 Msa1207000:intron 20.0%
!!! TAATGTTAGGTATACTTTTT+TGG + chr8_1:64376415-64376434 Msa1207000:intron 20.0%
!! ATATAGAATTTGGAAATAAG+GGG - chr8_1:64376819-64376838 None:intergenic 20.0%
!! CATATAGAATTTGGAAATAA+GGG - chr8_1:64376820-64376839 None:intergenic 20.0%
!!! CATTTTAAGCATATAGAATT+TGG - chr8_1:64376829-64376848 None:intergenic 20.0%
!! TTATATGCAACATAATGTAA+AGG - chr8_1:64376857-64376876 None:intergenic 20.0%
!! ATTTGGATAATCTTATCAAA+TGG - chr8_1:64376910-64376929 None:intergenic 20.0%
!! TTTGAATTCAATTATATAGC+TGG + chr8_1:64377196-64377215 Msa1207000:intron 20.0%
!! TAAAACATTGGTATTTAGTT+TGG + chr8_1:64377359-64377378 Msa1207000:intron 20.0%
!!! TATTTTTGTTTTGATTTTGC+AGG + chr8_1:64377490-64377509 Msa1207000:intron 20.0%
!! TGTAATTCATCAAATATACT+TGG + chr8_1:64378029-64378048 Msa1207000:three_prime_UTR 20.0%
!!! AGGTTTTAAGGTTTTGTTTT+TGG - chr8_1:64374246-64374265 None:intergenic 25.0%
! CTAGATGAATTCAAGTATAT+TGG + chr8_1:64374716-64374735 Msa1207000:intron 25.0%
! TTGGATAAATTATGTGATCT+TGG + chr8_1:64374735-64374754 Msa1207000:intron 25.0%
! TAAATTATGTGATCTTGGTT+TGG + chr8_1:64374740-64374759 Msa1207000:intron 25.0%
!!! GTCTTTTTTGAGAGAATTAT+TGG + chr8_1:64374881-64374900 Msa1207000:intron 25.0%
!!! CATAATAATTTTGAAGCACA+TGG - chr8_1:64374993-64375012 None:intergenic 25.0%
! GTGAACTATATGCATATTAA+TGG - chr8_1:64375071-64375090 None:intergenic 25.0%
! GTCTATGATAGATTAAATAC+CGG + chr8_1:64375157-64375176 Msa1207000:intron 25.0%
! TCTATGATAGATTAAATACC+GGG + chr8_1:64375158-64375177 Msa1207000:intron 25.0%
! TAAATTACACATTATCGAGT+TGG + chr8_1:64375985-64376004 Msa1207000:intron 25.0%
!!! GAATTATTTTCGAGTTGATT+CGG + chr8_1:64376143-64376162 Msa1207000:intron 25.0%
! TGTGTAATCTGATAAAACTA+GGG - chr8_1:64376180-64376199 None:intergenic 25.0%
! TTCAAATAGTCACTAATGTT+AGG + chr8_1:64376402-64376421 Msa1207000:intron 25.0%
!! TTAAATGAGTCAAAGGTTTT+AGG - chr8_1:64376444-64376463 None:intergenic 25.0%
!!! GAACATAGAATGTTTTTACT+TGG + chr8_1:64376621-64376640 Msa1207000:CDS 25.0%
! GCATATAGAATTTGGAAATA+AGG - chr8_1:64376821-64376840 None:intergenic 25.0%
!! ATGATATTGTTTGACCTTTT+AGG + chr8_1:64376945-64376964 Msa1207000:intron 25.0%
!! TGATATTGTTTGACCTTTTA+GGG + chr8_1:64376946-64376965 Msa1207000:intron 25.0%
!! ATTTTCAAAGAATCCCTAAA+AGG - chr8_1:64376962-64376981 None:intergenic 25.0%
! AACATTATTAATACACAGAG+AGG - chr8_1:64377067-64377086 None:intergenic 25.0%
! TCTGTGTATTAATAATGTTC+TGG + chr8_1:64377068-64377087 Msa1207000:intron 25.0%
! ATCAAATTAGTGAGAAATAC+GGG - chr8_1:64377324-64377343 None:intergenic 25.0%
! CATCAAATTAGTGAGAAATA+CGG - chr8_1:64377325-64377344 None:intergenic 25.0%
! ATTTCTCACTAATTTGATGT+CGG + chr8_1:64377326-64377345 Msa1207000:intron 25.0%
!! TTCTGAACCTTCTAATTTTT+CGG + chr8_1:64377458-64377477 Msa1207000:intron 25.0%
! TTCATCAAATATACTTGGTT+TGG + chr8_1:64378034-64378053 Msa1207000:three_prime_UTR 25.0%
! TCATCAAATATACTTGGTTT+GGG + chr8_1:64378035-64378054 Msa1207000:three_prime_UTR 25.0%
! AGGGCAAGTAAAAATTATTA+AGG - chr8_1:64378065-64378084 None:intergenic 25.0%
!! TTTCAACTTTTCATTTCTCA+AGG + chr8_1:64378185-64378204 Msa1207000:three_prime_UTR 25.0%
!! CTTTTTGACAACACTTAAAT+AGG - chr8_1:64378258-64378277 None:intergenic 25.0%
TAGAAGTTGAGTATAGTGAT+TGG - chr8_1:64374002-64374021 None:intergenic 30.0%
TTTATCCACGACAAGATAAA+TGG + chr8_1:64374124-64374143 Msa1207000:five_prime_UTR 30.0%
TTCAATTTCATTTCATGCCT+CGG + chr8_1:64374265-64374284 Msa1207000:five_prime_UTR 30.0%
!!! ACAAACCCTTTTTTCTTTCA+CGG - chr8_1:64374619-64374638 None:intergenic 30.0%
TTTGCTTGCATGTGAATTAT+TGG + chr8_1:64374666-64374685 Msa1207000:intron 30.0%
!!! TTTTTGGTTGGTGTAATTGT+AGG + chr8_1:64374809-64374828 Msa1207000:intron 30.0%
! TTGAATGTTGGTCTAAGAAA+TGG + chr8_1:64374924-64374943 Msa1207000:intron 30.0%
!!! AACATTGTTTTTGAACCACA+TGG - chr8_1:64374968-64374987 None:intergenic 30.0%
TGTATTCTACTGCCTAATTA+TGG + chr8_1:64375035-64375054 Msa1207000:intron 30.0%
GTATTCTACTGCCTAATTAT+GGG + chr8_1:64375036-64375055 Msa1207000:intron 30.0%
TATTCTACTGCCTAATTATG+GGG + chr8_1:64375037-64375056 Msa1207000:intron 30.0%
!! GCTCTTTTAACTATATGGTT+CGG + chr8_1:64375253-64375272 Msa1207000:intron 30.0%
ATCATGACTGAAACAATCTT+TGG + chr8_1:64375327-64375346 Msa1207000:intron 30.0%
!!! CCTTTTTTTTAACTCGAGAT+CGG + chr8_1:64375560-64375579 Msa1207000:intron 30.0%
GATAAATGATTCGTTGAACT+TGG - chr8_1:64376111-64376130 None:intergenic 30.0%
GTGTGTAATCTGATAAAACT+AGG - chr8_1:64376181-64376200 None:intergenic 30.0%
! TGCACAGAGTATTAGATTTA+GGG - chr8_1:64376258-64376277 None:intergenic 30.0%
! TTGCACAGAGTATTAGATTT+AGG - chr8_1:64376259-64376278 None:intergenic 30.0%
! GTCTATCTAAAGTTTGATCT+AGG - chr8_1:64376318-64376337 None:intergenic 30.0%
!!! TGTTAGGTATACTTTTTTGG+AGG + chr8_1:64376418-64376437 Msa1207000:intron 30.0%
AACCTTTGACTCATTTAACT+AGG + chr8_1:64376446-64376465 Msa1207000:intron 30.0%
AACCTAGTTAAATGAGTCAA+AGG - chr8_1:64376451-64376470 None:intergenic 30.0%
TGACTCATTTAACTAGGTTT+CGG + chr8_1:64376452-64376471 Msa1207000:intron 30.0%
ACGCTCAAAAATATTTCATC+AGG + chr8_1:64376727-64376746 Msa1207000:CDS 30.0%
! CTTATCAAATGGTAATGAAC+AGG - chr8_1:64376899-64376918 None:intergenic 30.0%
! AAATGGACAATTTTCCCAAA+TGG - chr8_1:64377020-64377039 None:intergenic 30.0%
GTTAGATATTGATAGAACCA+TGG + chr8_1:64377090-64377109 Msa1207000:intron 30.0%
!!! TTTGGCAATGTTTTAATAGC+CGG + chr8_1:64377123-64377142 Msa1207000:intron 30.0%
AATTGAATTCAAACCAACCA+GGG - chr8_1:64377189-64377208 None:intergenic 30.0%
TAATTGAATTCAAACCAACC+AGG - chr8_1:64377190-64377209 None:intergenic 30.0%
AATTCAATTATATAGCTGGC+TGG + chr8_1:64377200-64377219 Msa1207000:intron 30.0%
TTTCTCACTAATTTGATGTC+GGG + chr8_1:64377327-64377346 Msa1207000:intron 30.0%
!!! GGGACTGATTTTTAAAACAT+TGG + chr8_1:64377347-64377366 Msa1207000:intron 30.0%
!! AACATTGGTATTTAGTTTGG+AGG + chr8_1:64377362-64377381 Msa1207000:intron 30.0%
! AAACATTGCATTTTCTGATG+TGG + chr8_1:64377387-64377406 Msa1207000:intron 30.0%
GAAAAATTAGAAGGTTCAGA+AGG - chr8_1:64377459-64377478 None:intergenic 30.0%
! TCTGAACCTTCTAATTTTTC+GGG + chr8_1:64377459-64377478 Msa1207000:intron 30.0%
AGAAATCCCGAAAAATTAGA+AGG - chr8_1:64377468-64377487 None:intergenic 30.0%
TAATATGCTGGATATACTAC+CGG - chr8_1:64377713-64377732 None:intergenic 30.0%
AAGAATGGAGAATAATATGC+TGG - chr8_1:64377725-64377744 None:intergenic 30.0%
ACTTCATGTGTTTCTTTCTT+AGG - chr8_1:64377794-64377813 None:intergenic 30.0%
TAAGAAAGAAACACATGAAG+TGG + chr8_1:64377793-64377812 Msa1207000:CDS 30.0%
TGAGCATTATTATCATGATG+TGG + chr8_1:64378001-64378020 Msa1207000:exon 30.0%
! AGTAGTATCTAGGATTTACT+TGG + chr8_1:64378127-64378146 Msa1207000:three_prime_UTR 30.0%
! GTAGTATCTAGGATTTACTT+GGG + chr8_1:64378128-64378147 Msa1207000:three_prime_UTR 30.0%
GTTTATTTATGACCGTGGAT+TGG - chr8_1:64374053-64374072 None:intergenic 35.0%
TGATCGTTTATTTATGACCG+TGG - chr8_1:64374058-64374077 None:intergenic 35.0%
ACTATCCATTTATCTTGTCG+TGG - chr8_1:64374132-64374151 None:intergenic 35.0%
GAGGCATGAAATGAAATTGA+AGG - chr8_1:64374266-64374285 None:intergenic 35.0%
! TTTGGAGTAAGATTAACCGA+TGG + chr8_1:64374428-64374447 Msa1207000:CDS 35.0%
TTGGAGTAAGATTAACCGAT+GGG + chr8_1:64374429-64374448 Msa1207000:CDS 35.0%
TACTTCCCGTGAAAGAAAAA+AGG + chr8_1:64374610-64374629 Msa1207000:CDS 35.0%
ACTTCCCGTGAAAGAAAAAA+GGG + chr8_1:64374611-64374630 Msa1207000:CDS 35.0%
!!! CAAACCCTTTTTTCTTTCAC+GGG - chr8_1:64374618-64374637 None:intergenic 35.0%
AATTCACATGCAAGCAAAAG+AGG - chr8_1:64374664-64374683 None:intergenic 35.0%
!! TATGTGATCTTGGTTTGGAT+TGG + chr8_1:64374745-64374764 Msa1207000:intron 35.0%
TAGGAGTAACTAGACAAGAA+AGG + chr8_1:64374828-64374847 Msa1207000:intron 35.0%
! TGTTGGTCTAAGAAATGGAT+AGG + chr8_1:64374929-64374948 Msa1207000:intron 35.0%
AATGGATAGGTATAAGTCTC+AGG + chr8_1:64374942-64374961 Msa1207000:intron 35.0%
ATTCTACTGCCTAATTATGG+GGG + chr8_1:64375038-64375057 Msa1207000:intron 35.0%
CTGTTTCAGCTATCTAAACT+AGG + chr8_1:64375090-64375109 Msa1207000:intron 35.0%
ACCTGGACAAAAATAAAGCT+TGG - chr8_1:64375353-64375372 None:intergenic 35.0%
! TTTTCTGTGTCTTGAACCTT+CGG - chr8_1:64375404-64375423 None:intergenic 35.0%
GGTTCAAGACACAGAAAAAA+TGG + chr8_1:64375406-64375425 Msa1207000:intron 35.0%
!! TCTTAAGTTTTATCTAGGGC+TGG + chr8_1:64375446-64375465 Msa1207000:intron 35.0%
CCGATCTCGAGTTAAAAAAA+AGG - chr8_1:64375563-64375582 None:intergenic 35.0%
TTTACAGTTCACGAACAACT+CGG + chr8_1:64375587-64375606 Msa1207000:intron 35.0%
TTGTACGGACAGTAGTAAAA+AGG - chr8_1:64375777-64375796 None:intergenic 35.0%
! AGTGCAGTGCATATTTTGTA+CGG - chr8_1:64375792-64375811 None:intergenic 35.0%
AAAAAATTAGTCCCACATCG+GGG - chr8_1:64375851-64375870 None:intergenic 35.0%
CAAAAAATTAGTCCCACATC+GGG - chr8_1:64375852-64375871 None:intergenic 35.0%
GCAAAAAATTAGTCCCACAT+CGG - chr8_1:64375853-64375872 None:intergenic 35.0%
AGTTGAACTTGAACTGAGTA+TGG - chr8_1:64376033-64376052 None:intergenic 35.0%
TAATCTGATAAAACTAGGGC+TGG - chr8_1:64376176-64376195 None:intergenic 35.0%
ATTACACACAACCCTGAATA+GGG + chr8_1:64376192-64376211 Msa1207000:intron 35.0%
AAGAAATGTGACCCTATTCA+GGG - chr8_1:64376206-64376225 None:intergenic 35.0%
TAAGAAATGTGACCCTATTC+AGG - chr8_1:64376207-64376226 None:intergenic 35.0%
ACATTTCTTAAACGACGACA+TGG + chr8_1:64376217-64376236 Msa1207000:intron 35.0%
! GCACAGAGTATTAGATTTAG+GGG - chr8_1:64376257-64376276 None:intergenic 35.0%
CAAATTCAGCTAAACAGTAC+TGG - chr8_1:64376479-64376498 None:intergenic 35.0%
ACATTACAGTCAGCTTCAAT+GGG + chr8_1:64376516-64376535 Msa1207000:intron 35.0%
TTTACTTGGATTGAACAAGC+TGG + chr8_1:64376635-64376654 Msa1207000:CDS 35.0%
TTACTTGGATTGAACAAGCT+GGG + chr8_1:64376636-64376655 Msa1207000:CDS 35.0%
CCTTGATATAACATAGTTCC+TGG - chr8_1:64376685-64376704 None:intergenic 35.0%
CCAGGAACTATGTTATATCA+AGG + chr8_1:64376682-64376701 Msa1207000:CDS 35.0%
!! GAAATATTTTTGAGCGTGAC+TGG - chr8_1:64376724-64376743 None:intergenic 35.0%
CATCTGCAACAATATCAAAC+AGG - chr8_1:64376788-64376807 None:intergenic 35.0%
! ATGGTAATGAACAGGTTATG+TGG - chr8_1:64376891-64376910 None:intergenic 35.0%
! TGTCCATTTCCTGGATATTT+TGG + chr8_1:64377031-64377050 Msa1207000:intron 35.0%
CATCCAAAATATCCAGGAAA+TGG - chr8_1:64377037-64377056 None:intergenic 35.0%
CATCAACATCCAAAATATCC+AGG - chr8_1:64377043-64377062 None:intergenic 35.0%
TTAGAAGGTTCAGAAGGAAA+AGG - chr8_1:64377453-64377472 None:intergenic 35.0%
CAACTACAAACTGAAACAGA+AGG + chr8_1:64377557-64377576 Msa1207000:CDS 35.0%
! GTTTGAGTTTGTAGAATCCA+TGG - chr8_1:64377630-64377649 None:intergenic 35.0%
GATTCTACAAACTCAAACGA+TGG + chr8_1:64377632-64377651 Msa1207000:CDS 35.0%
AATATGCTGGATATACTACC+GGG - chr8_1:64377712-64377731 None:intergenic 35.0%
ACCAATATGGAAGAGGAAAA+GGG - chr8_1:64377748-64377767 None:intergenic 35.0%
CTGAGTTTAGGTGAAACTAT+TGG + chr8_1:64377881-64377900 Msa1207000:CDS 35.0%
TCTCGTAAACTACTTGAAGA+AGG + chr8_1:64377926-64377945 Msa1207000:CDS 35.0%
ACAAACTAGGTTAACCATTC+TGG - chr8_1:64378089-64378108 None:intergenic 35.0%
CAAGCAAACAAACACAAACT+AGG - chr8_1:64378102-64378121 None:intergenic 35.0%
GTTTGTGTTTGTTTGCTTGT+AGG + chr8_1:64378103-64378122 Msa1207000:three_prime_UTR 35.0%
! CTTAAATAGGAAGCACAACT+TGG - chr8_1:64378245-64378264 None:intergenic 35.0%
!! TTTATGACCGTGGATTGGTT+CGG - chr8_1:64374048-64374067 None:intergenic 40.0%
GGTAAAGATAAGATGCTACG+CGG - chr8_1:64374100-64374119 None:intergenic 40.0%
ATCTTGTCGTGGATAAAGAG+AGG - chr8_1:64374121-64374140 None:intergenic 40.0%
GTTGTGTTGTGTTGTGTTGT+TGG + chr8_1:64374152-64374171 Msa1207000:five_prime_UTR 40.0%
!!! GTTTTGAAGATCCGAATCAC+AGG - chr8_1:64374293-64374312 None:intergenic 40.0%
AACGAGAGAGGTGAATTATC+AGG - chr8_1:64374315-64374334 None:intergenic 40.0%
TCAAGAACTTGTCCAAATCG+TGG + chr8_1:64374395-64374414 Msa1207000:CDS 40.0%
TAAGATTAACCGATGGGATC+CGG + chr8_1:64374435-64374454 Msa1207000:CDS 40.0%
!! ATCCGGAAAAGTGCTAGTAT+GGG + chr8_1:64374452-64374471 Msa1207000:CDS 40.0%
! TACCCATACTAGCACTTTTC+CGG - chr8_1:64374457-64374476 None:intergenic 40.0%
GGTAATCTTAGCCACTATAG+CGG + chr8_1:64374473-64374492 Msa1207000:CDS 40.0%
GTAATCTTAGCCACTATAGC+GGG + chr8_1:64374474-64374493 Msa1207000:CDS 40.0%
ATAGATTAAATACCGGGCTG+TGG + chr8_1:64375164-64375183 Msa1207000:intron 40.0%
CAATGCTTGCAGATCATTAG+GGG - chr8_1:64375224-64375243 None:intergenic 40.0%
CCAATGCTTGCAGATCATTA+GGG - chr8_1:64375225-64375244 None:intergenic 40.0%
TTCAGTCATGATTCGAACTC+TGG - chr8_1:64375319-64375338 None:intergenic 40.0%
!!! GCCAAGCTTTATTTTTGTCC+AGG + chr8_1:64375349-64375368 Msa1207000:intron 40.0%
TTTCTGTGTCTTGAACCTTC+GGG - chr8_1:64375403-64375422 None:intergenic 40.0%
! CGACTCGATAAGATTTGGTT+CGG + chr8_1:64375508-64375527 Msa1207000:intron 40.0%
GGACAGTAGTAAAAAGGTAG+TGG - chr8_1:64375771-64375790 None:intergenic 40.0%
CAACTCAAGTTCGACTCATT+TGG + chr8_1:64376077-64376096 Msa1207000:intron 40.0%
GATTACACACAACCCTGAAT+AGG + chr8_1:64376191-64376210 Msa1207000:intron 40.0%
! CAGAGTATTAGATTTAGGGG+AGG - chr8_1:64376254-64376273 None:intergenic 40.0%
CACATTACAGTCAGCTTCAA+TGG + chr8_1:64376515-64376534 Msa1207000:intron 40.0%
CATTACAGTCAGCTTCAATG+GGG + chr8_1:64376517-64376536 Msa1207000:intron 40.0%
!! TTTTATTTGCAGGCACTCCA+TGG + chr8_1:64376589-64376608 Msa1207000:intron 40.0%
TGCAACAATATCAAACAGGC+TGG - chr8_1:64376784-64376803 None:intergenic 40.0%
! TCACGACACTGTTTTCCATT+TGG + chr8_1:64377002-64377021 Msa1207000:intron 40.0%
! CACGACACTGTTTTCCATTT+GGG + chr8_1:64377003-64377022 Msa1207000:intron 40.0%
TGGGAAAATTGTCCATTTCC+TGG + chr8_1:64377022-64377041 Msa1207000:intron 40.0%
TATTGATAGAACCATGGCTC+TGG + chr8_1:64377096-64377115 Msa1207000:intron 40.0%
ATTGATAGAACCATGGCTCT+GGG + chr8_1:64377097-64377116 Msa1207000:intron 40.0%
TTAGTGAGAAATACGGGTCA+TGG - chr8_1:64377318-64377337 None:intergenic 40.0%
TTAGCTGACAAGAAGTCTTG+CGG - chr8_1:64377536-64377555 None:intergenic 40.0%
! ATTGATGTCGGGCTTTAATG+GGG - chr8_1:64377672-64377691 None:intergenic 40.0%
! CATTGATGTCGGGCTTTAAT+GGG - chr8_1:64377673-64377692 None:intergenic 40.0%
! TCCCTTTTCCTCTTCCATAT+TGG + chr8_1:64377744-64377763 Msa1207000:CDS 40.0%
GACCAATATGGAAGAGGAAA+AGG - chr8_1:64377749-64377768 None:intergenic 40.0%
TTTCCTCTTCCATATTGGTC+TGG + chr8_1:64377749-64377768 Msa1207000:CDS 40.0%
TATCCAGACCAATATGGAAG+AGG - chr8_1:64377755-64377774 None:intergenic 40.0%
TGTGTTTCTTTCTTAGGAGC+TGG - chr8_1:64377788-64377807 None:intergenic 40.0%
! CGAGTTCATCGACATTGATT+GGG - chr8_1:64377847-64377866 None:intergenic 40.0%
ACGAGTTCATCGACATTGAT+TGG - chr8_1:64377848-64377867 None:intergenic 40.0%
ATCAATGTCGATGAACTCGT+TGG + chr8_1:64377848-64377867 Msa1207000:CDS 40.0%
GGCATGTCAAAACTGAGTTT+AGG + chr8_1:64377869-64377888 Msa1207000:CDS 40.0%
! GGTGAAACTATTGGTGATAC+TGG + chr8_1:64377890-64377909 Msa1207000:CDS 40.0%
TTTCATACAACTCCAGCTTG+TGG + chr8_1:64377968-64377987 Msa1207000:CDS 40.0%
TTCATACAACTCCAGCTTGT+GGG + chr8_1:64377969-64377988 Msa1207000:CDS 40.0%
! TTTTACTTGCCCTTCCAGAA+TGG + chr8_1:64378072-64378091 Msa1207000:three_prime_UTR 40.0%
! CTAGGTTAACCATTCTGGAA+GGG - chr8_1:64378084-64378103 None:intergenic 40.0%
ACTAGGTTAACCATTCTGGA+AGG - chr8_1:64378085-64378104 None:intergenic 40.0%
ACAATCTCCGAACCAATCCA+CGG + chr8_1:64374038-64374057 Msa1207000:five_prime_UTR 45.0%
!! ATGTTTGGTTTGGTCTCCCT+CGG - chr8_1:64374210-64374229 None:intergenic 45.0%
ACGGGTCATGATTTCTGAAC+CGG - chr8_1:64374342-64374361 None:intergenic 45.0%
TGTTCTCATTGCAGCCACAA+TGG + chr8_1:64374365-64374384 Msa1207000:CDS 45.0%
GTTCTCATTGCAGCCACAAT+GGG + chr8_1:64374366-64374385 Msa1207000:CDS 45.0%
! TTCTTGAGTTGTGCCCATTG+TGG - chr8_1:64374382-64374401 None:intergenic 45.0%
AACAGCTTCACACCACGATT+TGG - chr8_1:64374410-64374429 None:intergenic 45.0%
AATCGTGGTGTGAAGCTGTT+TGG + chr8_1:64374410-64374429 Msa1207000:CDS 45.0%
!! GATCCGGAAAAGTGCTAGTA+TGG + chr8_1:64374451-64374470 Msa1207000:CDS 45.0%
GGTATTCAAAAGTCCAGACC+CGG - chr8_1:64374501-64374520 None:intergenic 45.0%
! GGGTCTGGACTTTTGAATAC+CGG + chr8_1:64374500-64374519 Msa1207000:CDS 45.0%
! GGTCTGGACTTTTGAATACC+GGG + chr8_1:64374501-64374520 Msa1207000:CDS 45.0%
AATACCGGGTCAAATACTCC+TGG + chr8_1:64374515-64374534 Msa1207000:CDS 45.0%
!! TGAACCAGGAGTATTTGACC+CGG - chr8_1:64374522-64374541 None:intergenic 45.0%
TCAAATACTCCTGGTTCACC+TGG + chr8_1:64374524-64374543 Msa1207000:CDS 45.0%
AACCATCAGCACCATGATCA+GGG - chr8_1:64374556-64374575 None:intergenic 45.0%
TAACCATCAGCACCATGATC+AGG - chr8_1:64374557-64374576 None:intergenic 45.0%
!! GATCATGGTGCTGATGGTTA+TGG + chr8_1:64374557-64374576 Msa1207000:CDS 45.0%
! TGCTGATGGTTATGGTTCTG+AGG + chr8_1:64374565-64374584 Msa1207000:CDS 45.0%
!!! GGTTCTGAGGATTTTGTTCC+TGG + chr8_1:64374578-64374597 Msa1207000:CDS 45.0%
CCCTAATGATCTGCAAGCAT+TGG + chr8_1:64375222-64375241 Msa1207000:intron 45.0%
GCCAATGCTTGCAGATCATT+AGG - chr8_1:64375226-64375245 None:intergenic 45.0%
! ACTATATGGTTCGGCTCAAG+TGG + chr8_1:64375262-64375281 Msa1207000:intron 45.0%
! TTTTTGTCCAGGTCGAACTC+TGG + chr8_1:64375360-64375379 Msa1207000:intron 45.0%
TGTCTTGAACCTTCGGGAAA+GGG - chr8_1:64375397-64375416 None:intergenic 45.0%
! CGACTCGACTCGATAAGATT+TGG + chr8_1:64375503-64375522 Msa1207000:intron 45.0%
ATTTCCAAATCTCCCCGATG+TGG + chr8_1:64375836-64375855 Msa1207000:intron 45.0%
TTTCCAAATCTCCCCGATGT+GGG + chr8_1:64375837-64375856 Msa1207000:intron 45.0%
! TGAGTATGGTTCGACTCGTT+TGG - chr8_1:64376019-64376038 None:intergenic 45.0%
TACTCACTCTTGGGAAGGAT+GGG - chr8_1:64376292-64376311 None:intergenic 45.0%
ATCCTTCCCAAGAGTGAGTA+GGG + chr8_1:64376292-64376311 Msa1207000:intron 45.0%
GTCAGCTTCAATGGGGATTA+CGG + chr8_1:64376524-64376543 Msa1207000:intron 45.0%
ATCAAGGACACCTACTCAAG+TGG + chr8_1:64376698-64376717 Msa1207000:CDS 45.0%
TCAGGCAAAGCAATGTGTCT+AGG + chr8_1:64376745-64376764 Msa1207000:CDS 45.0%
! TTGATAGAACCATGGCTCTG+GGG + chr8_1:64377098-64377117 Msa1207000:intron 45.0%
AAACCAACCAGGGAACTAGT+TGG - chr8_1:64377179-64377198 None:intergenic 45.0%
AAAAACGGTTGAACCAGCCA+TGG - chr8_1:64377242-64377261 None:intergenic 45.0%
CAGAAGGAAAAGGAAAAGCG+AGG - chr8_1:64377443-64377462 None:intergenic 45.0%
! TGCGGTACCATTGAAGTATC+AGG - chr8_1:64377518-64377537 None:intergenic 45.0%
TCACATTCTTCATCGAGTGG+AGG - chr8_1:64377605-64377624 None:intergenic 45.0%
GACTCACATTCTTCATCGAG+TGG - chr8_1:64377608-64377627 None:intergenic 45.0%
CGATGAAGAATGTGAGTCCA+TGG + chr8_1:64377610-64377629 Msa1207000:CDS 45.0%
! GCATTGATGTCGGGCTTTAA+TGG - chr8_1:64377674-64377693 None:intergenic 45.0%
GGAAGAGGAAAAGGGAAGAA+TGG - chr8_1:64377740-64377759 None:intergenic 45.0%
GGACTGTATCCAGACCAATA+TGG - chr8_1:64377761-64377780 None:intergenic 45.0%
TTGGGCTCTTGGAATGTACT+GGG - chr8_1:64377829-64377848 None:intergenic 45.0%
ATTGGGCTCTTGGAATGTAC+TGG - chr8_1:64377830-64377849 None:intergenic 45.0%
! ATCGACATTGATTGGGCTCT+TGG - chr8_1:64377840-64377859 None:intergenic 45.0%
AGTTTACGAGACAGAGTCGA+GGG - chr8_1:64377917-64377936 None:intergenic 45.0%
TAGTTTACGAGACAGAGTCG+AGG - chr8_1:64377918-64377937 None:intergenic 45.0%
AGAAGGTCCTTCTAGACAGT+CGG + chr8_1:64377943-64377962 Msa1207000:CDS 45.0%
TGAAAAGCCGACTGTCTAGA+AGG - chr8_1:64377953-64377972 None:intergenic 45.0%
GCTTGTAGGCAGTAGTATCT+AGG + chr8_1:64378117-64378136 Msa1207000:three_prime_UTR 45.0%
!!! AATATTATATTTTTGATTTT+TGG + chr8_1:64374793-64374812 Msa1207000:intron 5.0%
!!! TTTTTGTTATATATATATAT+AGG + chr8_1:64375684-64375703 Msa1207000:intron 5.0%
! TGGTTCGGAGATTGTTGACG+TGG - chr8_1:64374033-64374052 None:intergenic 50.0%
!! TGTTTGGTTTGGTCTCCCTC+GGG - chr8_1:64374209-64374228 None:intergenic 50.0%
ATGCCTCGGATCCTGTGATT+CGG + chr8_1:64374279-64374298 Msa1207000:five_prime_UTR 50.0%
TTCACCTCTCTCGTTCGATC+CGG + chr8_1:64374320-64374339 Msa1207000:five_prime_UTR 50.0%
GCTGCAATGAGAACAACGAC+GGG - chr8_1:64374360-64374379 None:intergenic 50.0%
GGCTGCAATGAGAACAACGA+CGG - chr8_1:64374361-64374380 None:intergenic 50.0%
! AGCACTTTTCCGGATCCCAT+CGG - chr8_1:64374447-64374466 None:intergenic 50.0%
! CCATGATCAGGGTTTTCACC+AGG - chr8_1:64374545-64374564 None:intergenic 50.0%
CCTGGTGAAAACCCTGATCA+TGG + chr8_1:64374542-64374561 Msa1207000:CDS 50.0%
! AACCCTGATCATGGTGCTGA+TGG + chr8_1:64374551-64374570 Msa1207000:CDS 50.0%
CGGGAAGTAGAAGAAGAACC+AGG - chr8_1:64374599-64374618 None:intergenic 50.0%
GGTATAAGTCTCAGGCCATG+TGG + chr8_1:64374950-64374969 Msa1207000:intron 50.0%
CTGCCTAATTATGGGGGATG+AGG + chr8_1:64375044-64375063 Msa1207000:intron 50.0%
GGACCTCATCCCCCATAATT+AGG - chr8_1:64375050-64375069 None:intergenic 50.0%
ATTAAATACCGGGCTGTGGC+AGG + chr8_1:64375168-64375187 Msa1207000:intron 50.0%
GGGGTGAAACAAGCTAGACA+AGG - chr8_1:64375205-64375224 None:intergenic 50.0%
CAGGTCGAACTCTGGATTAC+CGG + chr8_1:64375368-64375387 Msa1207000:intron 50.0%
GTGTCTTGAACCTTCGGGAA+AGG - chr8_1:64375398-64375417 None:intergenic 50.0%
GAGCTCAGACAGGTTTGACT+CGG - chr8_1:64375484-64375503 None:intergenic 50.0%
! ACAACTCGGTTCGACTCGTT+AGG + chr8_1:64375601-64375620 Msa1207000:intron 50.0%
CTACTCACTCTTGGGAAGGA+TGG - chr8_1:64376293-64376312 None:intergenic 50.0%
CATCCTTCCCAAGAGTGAGT+AGG + chr8_1:64376291-64376310 Msa1207000:intron 50.0%
TCTAGGCCCTACTCACTCTT+GGG - chr8_1:64376301-64376320 None:intergenic 50.0%
ATCTAGGCCCTACTCACTCT+TGG - chr8_1:64376302-64376321 None:intergenic 50.0%
CTATGTTCCTCCTCAGTCCA+TGG - chr8_1:64376609-64376628 None:intergenic 50.0%
GGATTGAACAAGCTGGGCAA+AGG + chr8_1:64376642-64376661 Msa1207000:CDS 50.0%
ACAAGCTGGGCAAAGGTGAT+TGG + chr8_1:64376649-64376668 Msa1207000:CDS 50.0%
GGCAAAGCAATGTGTCTAGG+CGG + chr8_1:64376748-64376767 Msa1207000:CDS 50.0%
ATGTGTCTAGGCGGAAGAGA+CGG + chr8_1:64376757-64376776 Msa1207000:CDS 50.0%
!! AACCATGGCTCTGGGGTATT+TGG + chr8_1:64377105-64377124 Msa1207000:intron 50.0%
! GGAACTAGTTGGTTCCCTCT+CGG - chr8_1:64377168-64377187 None:intergenic 50.0%
GAACCAACTAGTTCCCTGGT+TGG + chr8_1:64377173-64377192 Msa1207000:intron 50.0%
GTTGAACCGCAGTTCAACCA+TGG + chr8_1:64377222-64377241 Msa1207000:intron 50.0%
AACCAGCCATGGTTGAACTG+CGG - chr8_1:64377231-64377250 None:intergenic 50.0%
GCAGGCACCTGATACTTCAA+TGG + chr8_1:64377508-64377527 Msa1207000:intron 50.0%
CATTCTTCATCGAGTGGAGG+AGG - chr8_1:64377602-64377621 None:intergenic 50.0%
! GACGCTTGTGCATTGATGTC+GGG - chr8_1:64377683-64377702 None:intergenic 50.0%
! CGACGCTTGTGCATTGATGT+CGG - chr8_1:64377684-64377703 None:intergenic 50.0%
CGACATCAATGCACAAGCGT+CGG + chr8_1:64377682-64377701 Msa1207000:CDS 50.0%
! TCTTTCTTAGGAGCTGGCTC+AGG - chr8_1:64377782-64377801 None:intergenic 50.0%
CTCTTGGAATGTACTGGGGT+TGG - chr8_1:64377824-64377843 None:intergenic 50.0%
TGGGCTCTTGGAATGTACTG+GGG - chr8_1:64377828-64377847 None:intergenic 50.0%
GTTTACGAGACAGAGTCGAG+GGG - chr8_1:64377916-64377935 None:intergenic 50.0%
GGAGATTGTTGACGTGGCAG+AGG - chr8_1:64374027-64374046 None:intergenic 55.0%
TCTGCAGCAGCAAAACCCGA+GGG + chr8_1:64374191-64374210 Msa1207000:five_prime_UTR 55.0%
GATCCGAATCACAGGATCCG+AGG - chr8_1:64374285-64374304 None:intergenic 55.0%
TGAACCGGATCGAACGAGAG+AGG - chr8_1:64374327-64374346 None:intergenic 55.0%
!! CTTAGCCACTATAGCGGGTC+CGG + chr8_1:64374479-64374498 Msa1207000:CDS 55.0%
!! TTAGCCACTATAGCGGGTCC+GGG + chr8_1:64374480-64374499 Msa1207000:CDS 55.0%
! GGGTTTTCACCAGGTGAACC+AGG - chr8_1:64374536-64374555 None:intergenic 55.0%
CGGTAATCCAGAGTTCGACC+TGG - chr8_1:64375370-64375389 None:intergenic 55.0%
GTCGAACTCTGGATTACCGG+AGG + chr8_1:64375371-64375390 Msa1207000:intron 55.0%
AGTCCCACATCGGGGAGATT+TGG - chr8_1:64375843-64375862 None:intergenic 55.0%
CACTCTTGGGAAGGATGGGA+AGG - chr8_1:64376288-64376307 None:intergenic 55.0%
GTGATTGGCGTGGAATTGCC+AGG + chr8_1:64376664-64376683 Msa1207000:CDS 55.0%
TGCCAAATACCCCAGAGCCA+TGG - chr8_1:64377110-64377129 None:intergenic 55.0%
AATAGCCGGACCGAACCAAC+CGG + chr8_1:64377137-64377156 Msa1207000:intron 55.0%
GAGGGAACCAACTAGTTCCC+TGG + chr8_1:64377169-64377188 Msa1207000:intron 55.0%
AACCGCAGTTCAACCATGGC+TGG + chr8_1:64377226-64377245 Msa1207000:intron 55.0%
CACAGAACAGTCCCACAAGC+TGG - chr8_1:64377983-64378002 None:intergenic 55.0%
CTCTGCAGCAGCAAAACCCG+AGG + chr8_1:64374190-64374209 Msa1207000:five_prime_UTR 60.0%
GTCAAACACCTGCCACAGCC+CGG - chr8_1:64375179-64375198 None:intergenic 60.0%
AACCTTCGGGAAAGGGCCTC+CGG - chr8_1:64375390-64375409 None:intergenic 60.0%
GAGTCGAGTCGAGCTCAGAC+AGG - chr8_1:64375494-64375513 None:intergenic 60.0%
GGCCCTACTCACTCTTGGGA+AGG - chr8_1:64376297-64376316 None:intergenic 60.0%
! TGCAGGCACTCCATGGACTG+AGG + chr8_1:64376596-64376615 Msa1207000:intron 60.0%
! AGGCACTCCATGGACTGAGG+AGG + chr8_1:64376599-64376618 Msa1207000:intron 60.0%
CTGGGCAAAGGTGATTGGCG+TGG + chr8_1:64376654-64376673 Msa1207000:CDS 60.0%
! GCGTGACTGGCCACTTGAGT+AGG - chr8_1:64376711-64376730 None:intergenic 60.0%
!! CACAACCGGTTGGTTCGGTC+CGG - chr8_1:64377145-64377164 None:intergenic 60.0%
! CTCGGCACAACCGGTTGGTT+CGG - chr8_1:64377150-64377169 None:intergenic 60.0%
AACCAACCGGTTGTGCCGAG+AGG + chr8_1:64377150-64377169 Msa1207000:intron 60.0%
ACCAACCGGTTGTGCCGAGA+GGG + chr8_1:64377151-64377170 Msa1207000:intron 60.0%
TGGTTCCCTCTCGGCACAAC+CGG - chr8_1:64377159-64377178 None:intergenic 60.0%
GTGGAGGAGGAGCAGGCAAA+GGG - chr8_1:64377589-64377608 None:intergenic 60.0%
AGTGGAGGAGGAGCAGGCAA+AGG - chr8_1:64377590-64377609 None:intergenic 60.0%
TCATCGAGTGGAGGAGGAGC+AGG - chr8_1:64377596-64377615 None:intergenic 60.0%
! GTCGGGCTTTAATGGGGCAG+AGG - chr8_1:64377666-64377685 None:intergenic 60.0%
!! TGCACAAGCGTCGGCTTACC+CGG + chr8_1:64377691-64377710 Msa1207000:CDS 60.0%
CAGACCCGGACCCGCTATAG+TGG - chr8_1:64374487-64374506 None:intergenic 65.0%
!! CACTATAGCGGGTCCGGGTC+TGG + chr8_1:64374485-64374504 Msa1207000:CDS 65.0%
TACCGGAGGCCCTTTCCCGA+AGG + chr8_1:64375385-64375404 Msa1207000:intron 65.0%
TCCCTCTCGGCACAACCGGT+TGG - chr8_1:64377155-64377174 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 64373992 64378303 64373992 ID=Msa1207000;Name=Msa1207000
chr8_1 mRNA 64373992 64378303 64373992 ID=Msa1207000-mRNA-1;Parent=Msa1207000;Name=Msa1207000-mRNA-1;_AED=0.16;_eAED=0.16;_QI=361|1|1|1|1|1|3|300|326
chr8_1 exon 64373992 64374632 64373992 ID=Msa1207000-mRNA-1:exon:20961;Parent=Msa1207000-mRNA-1
chr8_1 exon 64376601 64376809 64376601 ID=Msa1207000-mRNA-1:exon:20962;Parent=Msa1207000-mRNA-1
chr8_1 exon 64377512 64378303 64377512 ID=Msa1207000-mRNA-1:exon:20963;Parent=Msa1207000-mRNA-1
chr8_1 five_prime_UTR 64373992 64374352 64373992 ID=Msa1207000-mRNA-1:five_prime_utr;Parent=Msa1207000-mRNA-1
chr8_1 CDS 64374353 64374632 64374353 ID=Msa1207000-mRNA-1:cds;Parent=Msa1207000-mRNA-1
chr8_1 CDS 64376601 64376809 64376601 ID=Msa1207000-mRNA-1:cds;Parent=Msa1207000-mRNA-1
chr8_1 CDS 64377512 64378003 64377512 ID=Msa1207000-mRNA-1:cds;Parent=Msa1207000-mRNA-1
chr8_1 three_prime_UTR 64378004 64378303 64378004 ID=Msa1207000-mRNA-1:three_prime_utr;Parent=Msa1207000-mRNA-1
Gene Sequence

>Msa1207000

ATGACCCGTCGTTGTTCTCATTGCAGCCACAATGGGCACAACTCAAGAACTTGTCCAAATCGTGGTGTGAAGCTGTTTGGAGTAAGATTAACCGATGGGATCCGGAAAAGTGCTAGTATGGGTAATCTTAGCCACTATAGCGGGTCCGGGTCTGGACTTTTGAATACCGGGTCAAATACTCCTGGTTCACCTGGTGAAAACCCTGATCATGGTGCTGATGGTTATGGTTCTGAGGATTTTGTTCCTGGTTCTTCTTCTACTTCCCGTGAAAGAAAAAAGGGCACTCCATGGACTGAGGAGGAACATAGAATGTTTTTACTTGGATTGAACAAGCTGGGCAAAGGTGATTGGCGTGGAATTGCCAGGAACTATGTTATATCAAGGACACCTACTCAAGTGGCCAGTCACGCTCAAAAATATTTCATCAGGCAAAGCAATGTGTCTAGGCGGAAGAGACGGTCCAGCCTGTTTGATATTGTTGCAGATGATGCACCTGATACTTCAATGGTACCGCAAGACTTCTTGTCAGCTAATCAACTACAAACTGAAACAGAAGGCAATAACCCTTTGCCTGCTCCTCCTCCACTCGATGAAGAATGTGAGTCCATGGATTCTACAAACTCAAACGATGGAGAGTCTGCCTCTGCCCCATTAAAGCCCGACATCAATGCACAAGCGTCGGCTTACCCGGTAGTATATCCAGCATATTATTCTCCATTCTTCCCTTTTCCTCTTCCATATTGGTCTGGATACAGTCCTGAGCCAGCTCCTAAGAAAGAAACACATGAAGTGGTGAAGCCAACCCCAGTACATTCCAAGAGCCCAATCAATGTCGATGAACTCGTTGGCATGTCAAAACTGAGTTTAGGTGAAACTATTGGTGATACTGGCCCCTCGACTCTGTCTCGTAAACTACTTGAAGAAGGTCCTTCTAGACAGTCGGCTTTTCATACAACTCCAGCTTGTGGGACTGTTCTGTGA
Protein sequence

>Msa1207000

MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGIRKSASMGNLSHYSGSGSGLLNTGSNTPGSPGENPDHGADGYGSEDFVPGSSSTSRERKKGTPWTEEEHRMFLLGLNKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADDAPDTSMVPQDFLSANQLQTETEGNNPLPAPPPLDEECESMDSTNSNDGESASAPLKPDINAQASAYPVVYPAYYSPFFPFPLPYWSGYSPEPAPKKETHEVVKPTPVHSKSPINVDELVGMSKLSLGETIGDTGPSTLSRKLLEEGPSRQSAFHTTPACGTVL*