AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1207090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1207090 MtrunA17_Chr4g0055931 99.387 326 2 0 1 326 1 326 0.0 669
Msa1207090 MtrunA17_Chr2g0331031 51.744 344 139 11 1 323 1 338 2.52e-97 291
Msa1207090 MtrunA17_Chr5g0415191 48.768 203 65 5 1 183 3 186 1.98e-48 164
Msa1207090 MtrunA17_Chr6g0488471 47.568 185 75 4 1 173 1 175 7.88e-46 157
Msa1207090 MtrunA17_Chr8g0389241 48.889 180 70 6 3 167 4 176 3.00e-42 147
Msa1207090 MtrunA17_Chr4g0059701 54.902 153 58 5 15 162 5 151 2.36e-36 132
Msa1207090 MtrunA17_Chr1g0210471 52.800 125 43 2 49 173 93 201 2.14e-35 128
Msa1207090 MtrunA17_Chr3g0135671 41.622 185 94 4 1 180 3 178 2.96e-34 125
Msa1207090 MtrunA17_Chr4g0062741 58.654 104 36 1 89 192 132 228 1.68e-33 125
Msa1207090 MtrunA17_Chr3g0104071 60.000 100 38 1 71 168 121 220 2.93e-32 122
Msa1207090 MtrunA17_Chr1g0162081 47.727 132 57 2 37 168 76 195 1.51e-31 120
Msa1207090 MtrunA17_Chr5g0429521 73.239 71 19 0 89 159 126 196 4.19e-31 119
Msa1207090 MtrunA17_Chr7g0241761 66.667 81 27 0 87 167 132 212 4.77e-31 119
Msa1207090 MtrunA17_Chr3g0092621 67.647 68 22 0 95 162 84 151 4.77e-28 107
Msa1207090 MtrunA17_Chr5g0436501 64.198 81 27 1 90 168 120 200 7.48e-28 109
Msa1207090 MtrunA17_Chr5g0409841 36.111 144 86 3 47 184 42 185 6.05e-23 95.1
Msa1207090 MtrunA17_Chr6g0452791 47.368 95 42 1 96 190 81 167 1.69e-20 87.0
Msa1207090 MtrunA17_Chr5g0440731 40.678 118 58 4 47 158 60 171 5.61e-20 88.6
Msa1207090 MtrunA17_Chr5g0440741 41.379 116 55 5 47 158 60 166 1.33e-19 87.4
Msa1207090 MtrunA17_Chr5g0409831 47.368 76 39 1 68 142 49 124 3.32e-18 82.0
Msa1207090 MtrunA17_Chr1g0192061 36.719 128 65 5 43 157 1 125 2.73e-15 73.2
Msa1207090 MtrunA17_Chr8g0365011 41.237 97 37 3 92 168 83 179 3.09e-15 74.7
Msa1207090 MtrunA17_Chr8g0364731 58.621 58 22 1 104 159 10 67 6.94e-15 72.0
Msa1207090 MtrunA17_Chr5g0432921 39.583 96 43 4 76 157 83 177 2.45e-12 65.5
Msa1207090 MtrunA17_Chr3g0113121 35.088 114 62 3 97 201 97 207 2.20e-11 62.8
Msa1207090 MtrunA17_Chr8g0370121 28.244 131 89 2 92 220 97 224 4.91e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1207090 AT5G47390.1 63.277 354 95 10 1 321 1 352 1.58e-135 389
Msa1207090 AT3G16350.1 45.288 382 131 15 1 318 1 368 4.74e-71 226
Msa1207090 AT5G61620.1 50.267 187 71 5 1 173 8 186 1.52e-49 168
Msa1207090 AT1G70000.1 50.244 205 59 7 1 185 1 182 2.39e-48 163
Msa1207090 AT1G70000.2 50.244 205 59 7 1 185 1 182 2.39e-48 163
Msa1207090 AT5G56840.1 44.751 181 57 6 1 161 1 158 2.82e-39 139
Msa1207090 AT2G38090.1 71.795 78 22 0 90 167 136 213 2.51e-33 125
Msa1207090 AT1G74840.2 52.667 150 55 5 21 162 22 163 4.71e-33 122
Msa1207090 AT1G19000.2 45.128 195 89 4 5 191 4 188 5.95e-33 123
Msa1207090 AT1G19000.1 45.128 195 89 4 5 191 4 188 5.95e-33 123
Msa1207090 AT1G74840.1 52.667 150 55 5 21 162 22 163 7.76e-33 122
Msa1207090 AT5G08520.1 52.336 107 51 0 62 168 85 191 8.76e-33 123
Msa1207090 AT1G49010.1 68.293 82 24 1 89 168 128 209 1.15e-32 123
Msa1207090 AT5G04760.1 62.195 82 31 0 83 164 87 168 1.23e-31 118
Msa1207090 AT5G58900.1 72.857 70 19 0 90 159 136 205 5.34e-31 118
Msa1207090 AT3G11280.2 55.000 100 45 0 60 159 92 191 8.52e-29 112
Msa1207090 AT3G11280.1 55.000 100 45 0 60 159 92 191 8.52e-29 112
Msa1207090 AT5G01200.1 63.636 77 28 0 89 165 140 216 3.38e-28 110
Msa1207090 AT5G05790.2 63.636 77 28 0 83 159 119 195 1.26e-26 106
Msa1207090 AT5G05790.1 63.636 77 28 0 83 159 119 195 1.26e-26 106
Msa1207090 AT3G10580.2 48.039 102 51 1 68 169 68 167 8.12e-24 98.6
Msa1207090 AT3G10580.1 48.039 102 51 1 68 169 68 167 1.29e-23 98.6
Msa1207090 AT4G09450.1 48.515 101 46 2 75 169 68 168 6.13e-22 92.0
Msa1207090 AT5G23650.1 51.948 77 37 0 83 159 108 184 1.53e-20 90.9
Msa1207090 AT3G10590.1 48.276 87 41 3 79 162 92 177 3.53e-18 82.0

Find 144 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCATGTGTTTCTTTCTT+AGG 0.230059 8_1:-64510174 None:intergenic
TTCATCAAATATACTTGGTT+TGG 0.266321 8_1:+64510417 Msa1207090:three_prime_UTR
TTTATCCACGACAAGATAAA+TGG 0.288105 8_1:+64507237 Msa1207090:five_prime_UTR
GTTTGTGTTTGTTTGCTTGT+AGG 0.301972 8_1:+64510486 Msa1207090:three_prime_UTR
ATCGACATTGATTGGGCTCT+TGG 0.306199 8_1:-64510220 None:intergenic
GATCCGGAAAAGTGCTAGTA+TGG 0.310152 8_1:+64507564 Msa1207090:CDS
GGTTTATTTGTATTTATGTT+TGG 0.320649 8_1:-64507335 None:intergenic
CATTGATGTCGGGCTTTAAT+GGG 0.332518 8_1:-64510053 None:intergenic
GCATTGATGTCGGGCTTTAA+TGG 0.338606 8_1:-64510054 None:intergenic
GTTGTGTTGTGTTGTGTTGT+TGG 0.344442 8_1:+64507265 Msa1207090:five_prime_UTR
AACAGCTTCACACCACGATT+TGG 0.346847 8_1:-64507520 None:intergenic
TCATCAAATATACTTGGTTT+GGG 0.349945 8_1:+64510418 Msa1207090:three_prime_UTR
ATTGGGCTCTTGGAATGTAC+TGG 0.350663 8_1:-64510210 None:intergenic
ATTTGTATTTATGTTTGGTT+TGG 0.350949 8_1:-64507330 None:intergenic
ACGAGTTCATCGACATTGAT+TGG 0.357821 8_1:-64510228 None:intergenic
CTCCCTGCATTTGTTACACT+GGG 0.361159 8_1:-64510676 None:intergenic
CACTATAGCGGGTCCGGGTC+TGG 0.363851 8_1:+64507598 Msa1207090:CDS
GGTGAAACTATTGGTGATAC+TGG 0.369014 8_1:+64510273 Msa1207090:CDS
TTTCCTCTTCCATATTGGTC+TGG 0.369873 8_1:+64510132 Msa1207090:CDS
TGTGTTTCTTTCTTAGGAGC+TGG 0.373891 8_1:-64510168 None:intergenic
CCTTGATATAACATAGTTCC+TGG 0.379937 8_1:-64509066 None:intergenic
CCTCCCTGCATTTGTTACAC+TGG 0.381440 8_1:-64510677 None:intergenic
ATGTTTGGTTTGGTCTCCCT+CGG 0.397830 8_1:-64507320 None:intergenic
CTTAGCCACTATAGCGGGTC+CGG 0.398806 8_1:+64507592 Msa1207090:CDS
ACAAACTAGGTTAACCATTC+TGG 0.399924 8_1:-64510469 None:intergenic
TTCAATTTCATTTCATGCCT+CGG 0.409007 8_1:+64507378 Msa1207090:five_prime_UTR
GATCATGGTGCTGATGGTTA+TGG 0.418054 8_1:+64507670 Msa1207090:CDS
TAACCATCAGCACCATGATC+AGG 0.421312 8_1:-64507667 None:intergenic
TAGAAGTTGAGTATAGTGAT+TGG 0.425963 8_1:-64507112 None:intergenic
CTCTTGGAATGTACTGGGGT+TGG 0.426876 8_1:-64510204 None:intergenic
AACGAGAGAGGTGAATTATC+AGG 0.427162 8_1:-64507425 None:intergenic
GCTTGTAGGCAGTAGTATCT+AGG 0.428846 8_1:+64510500 Msa1207090:three_prime_UTR
TTCATACAACTCCAGCTTGT+GGG 0.433206 8_1:+64510352 Msa1207090:CDS
TTGGGCTCTTGGAATGTACT+GGG 0.435041 8_1:-64510209 None:intergenic
GGAAGAGGAAAAGGGAAGAA+TGG 0.436557 8_1:-64510120 None:intergenic
AGTAGTATCTAGGATTTACT+TGG 0.439017 8_1:+64510510 Msa1207090:three_prime_UTR
GACCAATATGGAAGAGGAAA+AGG 0.441108 8_1:-64510129 None:intergenic
TGCGGTACCATTGAAGTATC+AGG 0.442348 8_1:-64509898 None:intergenic
CTGAGTTTAGGTGAAACTAT+TGG 0.449826 8_1:+64510264 Msa1207090:CDS
ACGGGTCATGATTTCTGAAC+CGG 0.452893 8_1:-64507452 None:intergenic
GCAGGCACCTGATACTTCAA+TGG 0.455907 8_1:+64509891 Msa1207090:intron
GACGCTTGTGCATTGATGTC+GGG 0.457053 8_1:-64510063 None:intergenic
ATGCCTCGGATCCTGTGATT+CGG 0.462408 8_1:+64507392 Msa1207090:five_prime_UTR
GGACTGTATCCAGACCAATA+TGG 0.463662 8_1:-64510141 None:intergenic
AATCGTGGTGTGAAGCTGTT+TGG 0.464828 8_1:+64507523 Msa1207090:CDS
CGAGTTCATCGACATTGATT+GGG 0.465415 8_1:-64510227 None:intergenic
CATCTGCAACAATATCAAAC+AGG 0.473584 8_1:-64509169 None:intergenic
TGTAATTCATCAAATATACT+TGG 0.476466 8_1:+64510412 Msa1207090:three_prime_UTR
TGCACAAGCGTCGGCTTACC+CGG 0.477679 8_1:+64510074 Msa1207090:CDS
TGAAAAGCCGACTGTCTAGA+AGG 0.477844 8_1:-64510333 None:intergenic
ACAAGCTGGGCAAAGGTGAT+TGG 0.481462 8_1:+64509033 Msa1207090:CDS
GTTCTCATTGCAGCCACAAT+GGG 0.482827 8_1:+64507479 Msa1207090:CDS
TCATCGAGTGGAGGAGGAGC+AGG 0.484781 8_1:-64509976 None:intergenic
TTCACCTCTCTCGTTCGATC+CGG 0.485313 8_1:+64507433 Msa1207090:five_prime_UTR
CTATGTTCCTCCTCAGTCCA+TGG 0.485937 8_1:-64508990 None:intergenic
GAGGCATGAAATGAAATTGA+AGG 0.488386 8_1:-64507376 None:intergenic
TTTATGACCGTGGATTGGTT+CGG 0.489533 8_1:-64507158 None:intergenic
GGCATGTCAAAACTGAGTTT+AGG 0.490022 8_1:+64510252 Msa1207090:CDS
TAAGATTAACCGATGGGATC+CGG 0.490318 8_1:+64507548 Msa1207090:CDS
TCTTTCTTAGGAGCTGGCTC+AGG 0.491218 8_1:-64510162 None:intergenic
AAGAATGGAGAATAATATGC+TGG 0.499540 8_1:-64510105 None:intergenic
GTTTGAGTTTGTAGAATCCA+TGG 0.503591 8_1:-64510010 None:intergenic
CGACGCTTGTGCATTGATGT+CGG 0.504753 8_1:-64510064 None:intergenic
GTGATTGGCGTGGAATTGCC+AGG 0.506530 8_1:+64509048 Msa1207090:CDS
CAGACCCGGACCCGCTATAG+TGG 0.508114 8_1:-64507597 None:intergenic
CTTAAATAGGAAGCACAACT+TGG 0.509265 8_1:-64510625 None:intergenic
CACAGAACAGTCCCACAAGC+TGG 0.510753 8_1:-64510363 None:intergenic
TTACTTGGATTGAACAAGCT+GGG 0.512315 8_1:+64509020 Msa1207090:CDS
CATTCTTCATCGAGTGGAGG+AGG 0.516097 8_1:-64509982 None:intergenic
ACCAATATGGAAGAGGAAAA+GGG 0.517539 8_1:-64510128 None:intergenic
GTTTATTTATGACCGTGGAT+TGG 0.521412 8_1:-64507163 None:intergenic
CCAGGAACTATGTTATATCA+AGG 0.521846 8_1:+64509066 Msa1207090:CDS
AGTGGAGGAGGAGCAGGCAA+AGG 0.525729 8_1:-64509970 None:intergenic
GGAGATTGTTGACGTGGCAG+AGG 0.526371 8_1:-64507137 None:intergenic
TTTACTTGGATTGAACAAGC+TGG 0.526943 8_1:+64509019 Msa1207090:CDS
TCAAATACTCCTGGTTCACC+TGG 0.529002 8_1:+64507637 Msa1207090:CDS
TAAGAAAGAAACACATGAAG+TGG 0.531198 8_1:+64510176 Msa1207090:CDS
CAAGCAAACAAACACAAACT+AGG 0.532269 8_1:-64510482 None:intergenic
TAATATGCTGGATATACTAC+CGG 0.533057 8_1:-64510093 None:intergenic
CGATGAAGAATGTGAGTCCA+TGG 0.537872 8_1:+64509993 Msa1207090:CDS
GTGGAGGAGGAGCAGGCAAA+GGG 0.545011 8_1:-64509969 None:intergenic
GCTTTGAAGATCCGAATCAC+AGG 0.547364 8_1:-64507403 None:intergenic
TGTTTGGTTTGGTCTCCCTC+GGG 0.548440 8_1:-64507319 None:intergenic
AACCCTGATCATGGTGCTGA+TGG 0.553194 8_1:+64507664 Msa1207090:CDS
GTAGTATCTAGGATTTACTT+GGG 0.553645 8_1:+64510511 Msa1207090:three_prime_UTR
GTCGGGCTTTAATGGGGCAG+AGG 0.557337 8_1:-64510046 None:intergenic
TGCAACAATATCAAACAGGC+TGG 0.557484 8_1:-64509165 None:intergenic
TGTTCTCATTGCAGCCACAA+TGG 0.558526 8_1:+64507478 Msa1207090:CDS
GGTAATCTTAGCCACTATAG+CGG 0.560908 8_1:+64507586 Msa1207090:CDS
TCTCGTAAACTACTTGAAGA+AGG 0.563354 8_1:+64510309 Msa1207090:CDS
GATTCTACAAACTCAAACGA+TGG 0.564664 8_1:+64510015 Msa1207090:CDS
TATCCAGACCAATATGGAAG+AGG 0.565662 8_1:-64510135 None:intergenic
TTAGCCACTATAGCGGGTCC+GGG 0.567360 8_1:+64507593 Msa1207090:CDS
TTTCATACAACTCCAGCTTG+TGG 0.570031 8_1:+64510351 Msa1207090:CDS
AGTTTACGAGACAGAGTCGA+GGG 0.572728 8_1:-64510297 None:intergenic
TCAGGCAAAGCAATGTGTCT+AGG 0.575738 8_1:+64509129 Msa1207090:CDS
AATACCGGGTCAAATACTCC+TGG 0.575888 8_1:+64507628 Msa1207090:CDS
TTGGAGTAAGATTAACCGAT+GGG 0.581339 8_1:+64507542 Msa1207090:CDS
ACTATCCATTTATCTTGTCG+TGG 0.585024 8_1:-64507242 None:intergenic
TGCTGATGGTTATGGTTCTG+AGG 0.588306 8_1:+64507678 Msa1207090:CDS
GGATTGAACAAGCTGGGCAA+AGG 0.588333 8_1:+64509026 Msa1207090:CDS
AACCATCAGCACCATGATCA+GGG 0.589650 8_1:-64507666 None:intergenic
TGGTTCGGAGATTGTTGACG+TGG 0.590211 8_1:-64507143 None:intergenic
CCTGGTGAAAACCCTGATCA+TGG 0.590290 8_1:+64507655 Msa1207090:CDS
TGATCGTTTATTTATGACCG+TGG 0.591106 8_1:-64507168 None:intergenic
GTAATCTTAGCCACTATAGC+GGG 0.591144 8_1:+64507587 Msa1207090:CDS
CGGGAAGTAGAAGAAGAACC+AGG 0.591204 8_1:-64507709 None:intergenic
ACTAGGTTAACCATTCTGGA+AGG 0.591528 8_1:-64510465 None:intergenic
CTCTGCAGCAGCAAAACCCG+AGG 0.598531 8_1:+64507303 Msa1207090:five_prime_UTR
ATCAATGTCGATGAACTCGT+TGG 0.598709 8_1:+64510231 Msa1207090:CDS
GACTCACATTCTTCATCGAG+TGG 0.599669 8_1:-64509988 None:intergenic
AGAAGGTCCTTCTAGACAGT+CGG 0.599702 8_1:+64510326 Msa1207090:CDS
CAACTACAAACTGAAACAGA+AGG 0.603118 8_1:+64509940 Msa1207090:CDS
ATTGATGTCGGGCTTTAATG+GGG 0.617600 8_1:-64510052 None:intergenic
ATCCGGAAAAGTGCTAGTAT+GGG 0.617740 8_1:+64507565 Msa1207090:CDS
TTCTTGAGTTGTGCCCATTG+TGG 0.619382 8_1:-64507492 None:intergenic
ATCTTGTCGTGGATAAAGAG+AGG 0.620375 8_1:-64507231 None:intergenic
ATCAAGGACACCTACTCAAG+TGG 0.620432 8_1:+64509082 Msa1207090:CDS
TGAACCGGATCGAACGAGAG+AGG 0.621078 8_1:-64507437 None:intergenic
GCTGCAATGAGAACAACGAC+GGG 0.624049 8_1:-64507470 None:intergenic
CGACATCAATGCACAAGCGT+CGG 0.624911 8_1:+64510065 Msa1207090:CDS
CTGGGCAAAGGTGATTGGCG+TGG 0.626265 8_1:+64509038 Msa1207090:CDS
GATCCGAATCACAGGATCCG+AGG 0.626517 8_1:-64507395 None:intergenic
CTAGGTTAACCATTCTGGAA+GGG 0.628075 8_1:-64510464 None:intergenic
TTTGGAGTAAGATTAACCGA+TGG 0.628079 8_1:+64507541 Msa1207090:CDS
ATGTGTCTAGGCGGAAGAGA+CGG 0.634804 8_1:+64509141 Msa1207090:CDS
AATATGCTGGATATACTACC+GGG 0.636844 8_1:-64510092 None:intergenic
TGGGCTCTTGGAATGTACTG+GGG 0.642523 8_1:-64510208 None:intergenic
GCGTGACTGGCCACTTGAGT+AGG 0.645270 8_1:-64509092 None:intergenic
GGCTGCAATGAGAACAACGA+CGG 0.647502 8_1:-64507471 None:intergenic
TTAGCTGACAAGAAGTCTTG+CGG 0.653600 8_1:-64509916 None:intergenic
TGCAGGCACTCCATGGACTG+AGG 0.655185 8_1:+64508980 Msa1207090:intron
GGTATTCAAAAGTCCAGACC+CGG 0.655952 8_1:-64507611 None:intergenic
ACAATCTCCGAACCAATCCA+CGG 0.660058 8_1:+64507151 Msa1207090:five_prime_UTR
TGAGCATTATTATCATGATG+TGG 0.662122 8_1:+64510384 Msa1207090:exon
TCAAGAACTTGTCCAAATCG+TGG 0.664250 8_1:+64507508 Msa1207090:CDS
TAGTTTACGAGACAGAGTCG+AGG 0.668337 8_1:-64510298 None:intergenic
TCACATTCTTCATCGAGTGG+AGG 0.671641 8_1:-64509985 None:intergenic
TCTGCAGCAGCAAAACCCGA+GGG 0.677080 8_1:+64507304 Msa1207090:five_prime_UTR
AGGCACTCCATGGACTGAGG+AGG 0.685831 8_1:+64508983 Msa1207090:intron
GGCAAAGCAATGTGTCTAGG+CGG 0.687559 8_1:+64509132 Msa1207090:CDS
TGAACCAGGAGTATTTGACC+CGG 0.708436 8_1:-64507632 None:intergenic
GTTTACGAGACAGAGTCGAG+GGG 0.738520 8_1:-64510296 None:intergenic
GGTAAAGATAAGATGCTACG+CGG 0.788761 8_1:-64507210 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTAATATTTTATTTGC+AGG + chr8_1:64508963-64508982 Msa1207090:intron 10.0%
!!! GAAAAAGTATTAAAAAAAAA+CGG - chr8_1:64509640-64509659 None:intergenic 10.0%
!!! TTATATTTTTGATTTTTGGT+TGG + chr8_1:64507911-64507930 Msa1207090:intron 15.0%
!! ATTATTATGTTTGTTTAACT+TGG + chr8_1:64508118-64508137 Msa1207090:intron 15.0%
!!! AAATATCATTTAAAGCAAAA+AGG - chr8_1:64508724-64508743 None:intergenic 15.0%
!! CATTAAAAAAAAAACACATT+TGG - chr8_1:64509311-64509330 None:intergenic 15.0%
!! ATTTGTATTTATGTTTGGTT+TGG - chr8_1:64507333-64507352 None:intergenic 20.0%
!! GGTTTATTTGTATTTATGTT+TGG - chr8_1:64507338-64507357 None:intergenic 20.0%
!!! AAATGAAATTGAAGGTTTTA+AGG - chr8_1:64507371-64507390 None:intergenic 20.0%
!!! ATCTGAAATATATTGAATGT+TGG + chr8_1:64508026-64508045 Msa1207090:intron 20.0%
!!! AATATGCTCTTTTAACTATA+TGG + chr8_1:64508362-64508381 Msa1207090:intron 20.0%
!!! TTTGCTTTAAATGATATTTG+TGG + chr8_1:64508725-64508744 Msa1207090:intron 20.0%
!!! TAATGTTAGGTATACTTTTT+TGG + chr8_1:64508799-64508818 Msa1207090:intron 20.0%
!!! AATGTTAGGTATACTTTTTT+GGG + chr8_1:64508800-64508819 Msa1207090:intron 20.0%
!! ATATAGAATTTGGAAATAAG+GGG - chr8_1:64509203-64509222 None:intergenic 20.0%
!! CATATAGAATTTGGAAATAA+GGG - chr8_1:64509204-64509223 None:intergenic 20.0%
!!! CATTTTAAGCATATAGAATT+TGG - chr8_1:64509213-64509232 None:intergenic 20.0%
!! TTATATGCAACATAATGTAA+AGG - chr8_1:64509241-64509260 None:intergenic 20.0%
!! ATTTGGATAATCTTATCAAA+TGG - chr8_1:64509294-64509313 None:intergenic 20.0%
!! TTTGAATTCAATTATATAGC+TGG + chr8_1:64509579-64509598 Msa1207090:intron 20.0%
!! TAAAACATTGGTATTTAGTT+TGG + chr8_1:64509742-64509761 Msa1207090:intron 20.0%
!!! TATTTTTGTTTTGATTTTGC+AGG + chr8_1:64509873-64509892 Msa1207090:intron 20.0%
!! TGTAATTCATCAAATATACT+TGG + chr8_1:64510412-64510431 Msa1207090:three_prime_UTR 20.0%
!!! AGGTTTTAAGGTTTTGTTTT+TGG - chr8_1:64507359-64507378 None:intergenic 25.0%
! CTAGATGAATTCAAGTATAT+TGG + chr8_1:64507830-64507849 Msa1207090:intron 25.0%
! TTGGATAAATTATGTGATCT+TGG + chr8_1:64507849-64507868 Msa1207090:intron 25.0%
! TAAATTATGTGATCTTGGTT+TGG + chr8_1:64507854-64507873 Msa1207090:intron 25.0%
!!! GTCTTTTTTGAGAGAATTAT+TGG + chr8_1:64507995-64508014 Msa1207090:intron 25.0%
! GTGAACTATATGCATATTAA+TGG - chr8_1:64508185-64508204 None:intergenic 25.0%
! GTCTATGATAGATTAAATAC+CGG + chr8_1:64508271-64508290 Msa1207090:intron 25.0%
! TCTATGATAGATTAAATACC+GGG + chr8_1:64508272-64508291 Msa1207090:intron 25.0%
! TTCAAATAGTCACTAATGTT+AGG + chr8_1:64508786-64508805 Msa1207090:intron 25.0%
!!! ATGTTAGGTATACTTTTTTG+GGG + chr8_1:64508801-64508820 Msa1207090:intron 25.0%
!! TTAAATGAGTCAAAGGTTTT+AGG - chr8_1:64508828-64508847 None:intergenic 25.0%
!!! GAACATAGAATGTTTTTACT+TGG + chr8_1:64509005-64509024 Msa1207090:CDS 25.0%
! GCATATAGAATTTGGAAATA+AGG - chr8_1:64509205-64509224 None:intergenic 25.0%
!! ATGATATTGTTTGACCTTTT+AGG + chr8_1:64509328-64509347 Msa1207090:intron 25.0%
!! TGATATTGTTTGACCTTTTA+GGG + chr8_1:64509329-64509348 Msa1207090:intron 25.0%
!! ATTTTCAAAGAATCCCTAAA+AGG - chr8_1:64509345-64509364 None:intergenic 25.0%
! AACATTATTAATACACAGAG+AGG - chr8_1:64509450-64509469 None:intergenic 25.0%
! TCTGTGTATTAATAATGTTC+TGG + chr8_1:64509451-64509470 Msa1207090:intron 25.0%
! GTTAGATATTGATAGAAACA+TGG + chr8_1:64509473-64509492 Msa1207090:intron 25.0%
! ATCAAATTAGTGAGAAATAC+GGG - chr8_1:64509707-64509726 None:intergenic 25.0%
! CATCAAATTAGTGAGAAATA+CGG - chr8_1:64509708-64509727 None:intergenic 25.0%
! ATTTCTCACTAATTTGATGT+CGG + chr8_1:64509709-64509728 Msa1207090:intron 25.0%
!! TTCTGAACCTTCTAATTTTT+CGG + chr8_1:64509841-64509860 Msa1207090:intron 25.0%
! TTCATCAAATATACTTGGTT+TGG + chr8_1:64510417-64510436 Msa1207090:three_prime_UTR 25.0%
! TCATCAAATATACTTGGTTT+GGG + chr8_1:64510418-64510437 Msa1207090:three_prime_UTR 25.0%
! AGGGCAAGTAAAAATTATTA+AGG - chr8_1:64510448-64510467 None:intergenic 25.0%
!! TTTCAACTTTTCATTTCTCA+AGG + chr8_1:64510568-64510587 Msa1207090:three_prime_UTR 25.0%
!! CTTTTTGACAACACTTAAAT+AGG - chr8_1:64510641-64510660 None:intergenic 25.0%
TAGAAGTTGAGTATAGTGAT+TGG - chr8_1:64507115-64507134 None:intergenic 30.0%
TTTATCCACGACAAGATAAA+TGG + chr8_1:64507237-64507256 Msa1207090:five_prime_UTR 30.0%
TTCAATTTCATTTCATGCCT+CGG + chr8_1:64507378-64507397 Msa1207090:five_prime_UTR 30.0%
!!! ACAAACCCTTTTTTCTTTCA+CGG - chr8_1:64507732-64507751 None:intergenic 30.0%
TTTGCTTGCATGTGAATTAT+TGG + chr8_1:64507780-64507799 Msa1207090:intron 30.0%
!!! TTTTTGGTTGGTGTAATTGT+AGG + chr8_1:64507923-64507942 Msa1207090:intron 30.0%
! TTGAATGTTGGTCTAAGAAA+TGG + chr8_1:64508038-64508057 Msa1207090:intron 30.0%
!!! AACATTGTTTTTGAACCACA+TGG - chr8_1:64508082-64508101 None:intergenic 30.0%
TGTATTCTAGTGCCTAATTA+TGG + chr8_1:64508149-64508168 Msa1207090:intron 30.0%
GTATTCTAGTGCCTAATTAT+GGG + chr8_1:64508150-64508169 Msa1207090:intron 30.0%
TATTCTAGTGCCTAATTATG+GGG + chr8_1:64508151-64508170 Msa1207090:intron 30.0%
!! GCTCTTTTAACTATATGGTT+CGG + chr8_1:64508367-64508386 Msa1207090:intron 30.0%
ATCATGACTGAAACAATCTT+TGG + chr8_1:64508441-64508460 Msa1207090:intron 30.0%
! TGCACAGAGTATTAGATTTA+GGG - chr8_1:64508642-64508661 None:intergenic 30.0%
! TTGCACAGAGTATTAGATTT+AGG - chr8_1:64508643-64508662 None:intergenic 30.0%
! GTCTATCTAAAGTTTGATCT+AGG - chr8_1:64508702-64508721 None:intergenic 30.0%
!!! TGTTAGGTATACTTTTTTGG+GGG + chr8_1:64508802-64508821 Msa1207090:intron 30.0%
AACCTTTGACTCATTTAACT+AGG + chr8_1:64508830-64508849 Msa1207090:intron 30.0%
AACCTAGTTAAATGAGTCAA+AGG - chr8_1:64508835-64508854 None:intergenic 30.0%
TGACTCATTTAACTAGGTTT+CGG + chr8_1:64508836-64508855 Msa1207090:intron 30.0%
ACGCTCAAAAATATTTCATC+AGG + chr8_1:64509111-64509130 Msa1207090:CDS 30.0%
! CTTATCAAATGGTAATGAAC+AGG - chr8_1:64509283-64509302 None:intergenic 30.0%
! AAATGGACAATTTTCCCAAA+TGG - chr8_1:64509403-64509422 None:intergenic 30.0%
!!! TTTGGCAATGTTTTAATAGC+CGG + chr8_1:64509506-64509525 Msa1207090:intron 30.0%
AATTGAATTCAAACCAACCA+GGG - chr8_1:64509572-64509591 None:intergenic 30.0%
TAATTGAATTCAAACCAACC+AGG - chr8_1:64509573-64509592 None:intergenic 30.0%
AATTCAATTATATAGCTGGC+TGG + chr8_1:64509583-64509602 Msa1207090:intron 30.0%
TTTCTCACTAATTTGATGTC+GGG + chr8_1:64509710-64509729 Msa1207090:intron 30.0%
!!! GGGACTGATTTTTAAAACAT+TGG + chr8_1:64509730-64509749 Msa1207090:intron 30.0%
!! AACATTGGTATTTAGTTTGG+AGG + chr8_1:64509745-64509764 Msa1207090:intron 30.0%
! AAACATTGCATTTTCTGATG+TGG + chr8_1:64509770-64509789 Msa1207090:intron 30.0%
GAAAAATTAGAAGGTTCAGA+AGG - chr8_1:64509842-64509861 None:intergenic 30.0%
! TCTGAACCTTCTAATTTTTC+GGG + chr8_1:64509842-64509861 Msa1207090:intron 30.0%
AGAAATCCCGAAAAATTAGA+AGG - chr8_1:64509851-64509870 None:intergenic 30.0%
TAATATGCTGGATATACTAC+CGG - chr8_1:64510096-64510115 None:intergenic 30.0%
AAGAATGGAGAATAATATGC+TGG - chr8_1:64510108-64510127 None:intergenic 30.0%
ACTTCATGTGTTTCTTTCTT+AGG - chr8_1:64510177-64510196 None:intergenic 30.0%
TAAGAAAGAAACACATGAAG+TGG + chr8_1:64510176-64510195 Msa1207090:CDS 30.0%
TGAGCATTATTATCATGATG+TGG + chr8_1:64510384-64510403 Msa1207090:exon 30.0%
! AGTAGTATCTAGGATTTACT+TGG + chr8_1:64510510-64510529 Msa1207090:three_prime_UTR 30.0%
! GTAGTATCTAGGATTTACTT+GGG + chr8_1:64510511-64510530 Msa1207090:three_prime_UTR 30.0%
GTTTATTTATGACCGTGGAT+TGG - chr8_1:64507166-64507185 None:intergenic 35.0%
TGATCGTTTATTTATGACCG+TGG - chr8_1:64507171-64507190 None:intergenic 35.0%
ACTATCCATTTATCTTGTCG+TGG - chr8_1:64507245-64507264 None:intergenic 35.0%
GAGGCATGAAATGAAATTGA+AGG - chr8_1:64507379-64507398 None:intergenic 35.0%
! TTTGGAGTAAGATTAACCGA+TGG + chr8_1:64507541-64507560 Msa1207090:CDS 35.0%
TTGGAGTAAGATTAACCGAT+GGG + chr8_1:64507542-64507561 Msa1207090:CDS 35.0%
TACTTCCCGTGAAAGAAAAA+AGG + chr8_1:64507723-64507742 Msa1207090:CDS 35.0%
ACTTCCCGTGAAAGAAAAAA+GGG + chr8_1:64507724-64507743 Msa1207090:CDS 35.0%
!!! CAAACCCTTTTTTCTTTCAC+GGG - chr8_1:64507731-64507750 None:intergenic 35.0%
AATTCACATGCAAGCAAAAG+AGG - chr8_1:64507778-64507797 None:intergenic 35.0%
!! TATGTGATCTTGGTTTGGAT+TGG + chr8_1:64507859-64507878 Msa1207090:intron 35.0%
TAGGAGTAACTAGACAAGAA+AGG + chr8_1:64507942-64507961 Msa1207090:intron 35.0%
! TGTTGGTCTAAGAAATGGAT+AGG + chr8_1:64508043-64508062 Msa1207090:intron 35.0%
AATGGATAGGTATAAGTCTC+AGG + chr8_1:64508056-64508075 Msa1207090:intron 35.0%
ATTCTAGTGCCTAATTATGG+GGG + chr8_1:64508152-64508171 Msa1207090:intron 35.0%
CTGTTTCAGCTATCTAAACT+AGG + chr8_1:64508204-64508223 Msa1207090:intron 35.0%
ACCTGGACAAAAATAAAGCT+TGG - chr8_1:64508467-64508486 None:intergenic 35.0%
! TTTTCTGTGTCTTGAACCTT+CGG - chr8_1:64508518-64508537 None:intergenic 35.0%
GGTTCAAGACACAGAAAAAA+TGG + chr8_1:64508520-64508539 Msa1207090:intron 35.0%
ATTACACACAACCCTGAATA+GGG + chr8_1:64508576-64508595 Msa1207090:intron 35.0%
AAGAAATGTGACCCTATTCA+GGG - chr8_1:64508590-64508609 None:intergenic 35.0%
TAAGAAATGTGACCCTATTC+AGG - chr8_1:64508591-64508610 None:intergenic 35.0%
ACATTTCTTAAACGACGACA+TGG + chr8_1:64508601-64508620 Msa1207090:intron 35.0%
! GCACAGAGTATTAGATTTAG+GGG - chr8_1:64508641-64508660 None:intergenic 35.0%
CAAATTCAGCTAAACAGTAC+TGG - chr8_1:64508863-64508882 None:intergenic 35.0%
ACATTACAGTCAGCTTCAAT+GGG + chr8_1:64508900-64508919 Msa1207090:intron 35.0%
TTTACTTGGATTGAACAAGC+TGG + chr8_1:64509019-64509038 Msa1207090:CDS 35.0%
TTACTTGGATTGAACAAGCT+GGG + chr8_1:64509020-64509039 Msa1207090:CDS 35.0%
CCTTGATATAACATAGTTCC+TGG - chr8_1:64509069-64509088 None:intergenic 35.0%
CCAGGAACTATGTTATATCA+AGG + chr8_1:64509066-64509085 Msa1207090:CDS 35.0%
!! GAAATATTTTTGAGCGTGAC+TGG - chr8_1:64509108-64509127 None:intergenic 35.0%
CATCTGCAACAATATCAAAC+AGG - chr8_1:64509172-64509191 None:intergenic 35.0%
! ATGGTAATGAACAGGTTATG+TGG - chr8_1:64509275-64509294 None:intergenic 35.0%
! TGTCCATTTCCTGGATATTT+TGG + chr8_1:64509414-64509433 Msa1207090:intron 35.0%
CATCCAAAATATCCAGGAAA+TGG - chr8_1:64509420-64509439 None:intergenic 35.0%
CATCAACATCCAAAATATCC+AGG - chr8_1:64509426-64509445 None:intergenic 35.0%
TATTGATAGAAACATGGCTC+TGG + chr8_1:64509479-64509498 Msa1207090:intron 35.0%
ATTGATAGAAACATGGCTCT+GGG + chr8_1:64509480-64509499 Msa1207090:intron 35.0%
TTAGAAGGTTCAGAAGGAAA+AGG - chr8_1:64509836-64509855 None:intergenic 35.0%
CAACTACAAACTGAAACAGA+AGG + chr8_1:64509940-64509959 Msa1207090:CDS 35.0%
! GTTTGAGTTTGTAGAATCCA+TGG - chr8_1:64510013-64510032 None:intergenic 35.0%
GATTCTACAAACTCAAACGA+TGG + chr8_1:64510015-64510034 Msa1207090:CDS 35.0%
AATATGCTGGATATACTACC+GGG - chr8_1:64510095-64510114 None:intergenic 35.0%
ACCAATATGGAAGAGGAAAA+GGG - chr8_1:64510131-64510150 None:intergenic 35.0%
CTGAGTTTAGGTGAAACTAT+TGG + chr8_1:64510264-64510283 Msa1207090:CDS 35.0%
TCTCGTAAACTACTTGAAGA+AGG + chr8_1:64510309-64510328 Msa1207090:CDS 35.0%
ACAAACTAGGTTAACCATTC+TGG - chr8_1:64510472-64510491 None:intergenic 35.0%
CAAGCAAACAAACACAAACT+AGG - chr8_1:64510485-64510504 None:intergenic 35.0%
GTTTGTGTTTGTTTGCTTGT+AGG + chr8_1:64510486-64510505 Msa1207090:three_prime_UTR 35.0%
! CTTAAATAGGAAGCACAACT+TGG - chr8_1:64510628-64510647 None:intergenic 35.0%
!! TTTATGACCGTGGATTGGTT+CGG - chr8_1:64507161-64507180 None:intergenic 40.0%
GGTAAAGATAAGATGCTACG+CGG - chr8_1:64507213-64507232 None:intergenic 40.0%
ATCTTGTCGTGGATAAAGAG+AGG - chr8_1:64507234-64507253 None:intergenic 40.0%
GTTGTGTTGTGTTGTGTTGT+TGG + chr8_1:64507265-64507284 Msa1207090:five_prime_UTR 40.0%
AACGAGAGAGGTGAATTATC+AGG - chr8_1:64507428-64507447 None:intergenic 40.0%
TCAAGAACTTGTCCAAATCG+TGG + chr8_1:64507508-64507527 Msa1207090:CDS 40.0%
TAAGATTAACCGATGGGATC+CGG + chr8_1:64507548-64507567 Msa1207090:CDS 40.0%
!! ATCCGGAAAAGTGCTAGTAT+GGG + chr8_1:64507565-64507584 Msa1207090:CDS 40.0%
! TACCCATACTAGCACTTTTC+CGG - chr8_1:64507570-64507589 None:intergenic 40.0%
GGTAATCTTAGCCACTATAG+CGG + chr8_1:64507586-64507605 Msa1207090:CDS 40.0%
GTAATCTTAGCCACTATAGC+GGG + chr8_1:64507587-64507606 Msa1207090:CDS 40.0%
ATAGATTAAATACCGGGCTG+TGG + chr8_1:64508278-64508297 Msa1207090:intron 40.0%
CAATGCTTGCAGATCATTAG+GGG - chr8_1:64508338-64508357 None:intergenic 40.0%
CCAATGCTTGCAGATCATTA+GGG - chr8_1:64508339-64508358 None:intergenic 40.0%
TTCAGTCATGATTCGAACTC+TGG - chr8_1:64508433-64508452 None:intergenic 40.0%
!!! GCCAAGCTTTATTTTTGTCC+AGG + chr8_1:64508463-64508482 Msa1207090:intron 40.0%
TTTCTGTGTCTTGAACCTTC+GGG - chr8_1:64508517-64508536 None:intergenic 40.0%
GATTACACACAACCCTGAAT+AGG + chr8_1:64508575-64508594 Msa1207090:intron 40.0%
! CAGAGTATTAGATTTAGGGG+AGG - chr8_1:64508638-64508657 None:intergenic 40.0%
CACATTACAGTCAGCTTCAA+TGG + chr8_1:64508899-64508918 Msa1207090:intron 40.0%
CATTACAGTCAGCTTCAATG+GGG + chr8_1:64508901-64508920 Msa1207090:intron 40.0%
!! TTTTATTTGCAGGCACTCCA+TGG + chr8_1:64508973-64508992 Msa1207090:intron 40.0%
TGCAACAATATCAAACAGGC+TGG - chr8_1:64509168-64509187 None:intergenic 40.0%
! TCACGACACTGTTTTCCATT+TGG + chr8_1:64509385-64509404 Msa1207090:intron 40.0%
! CACGACACTGTTTTCCATTT+GGG + chr8_1:64509386-64509405 Msa1207090:intron 40.0%
TGGGAAAATTGTCCATTTCC+TGG + chr8_1:64509405-64509424 Msa1207090:intron 40.0%
! TTGATAGAAACATGGCTCTG+GGG + chr8_1:64509481-64509500 Msa1207090:intron 40.0%
TTAGTGAGAAATACGGGTCA+TGG - chr8_1:64509701-64509720 None:intergenic 40.0%
TTAGCTGACAAGAAGTCTTG+CGG - chr8_1:64509919-64509938 None:intergenic 40.0%
! ATTGATGTCGGGCTTTAATG+GGG - chr8_1:64510055-64510074 None:intergenic 40.0%
! CATTGATGTCGGGCTTTAAT+GGG - chr8_1:64510056-64510075 None:intergenic 40.0%
! TCCCTTTTCCTCTTCCATAT+TGG + chr8_1:64510127-64510146 Msa1207090:CDS 40.0%
GACCAATATGGAAGAGGAAA+AGG - chr8_1:64510132-64510151 None:intergenic 40.0%
TTTCCTCTTCCATATTGGTC+TGG + chr8_1:64510132-64510151 Msa1207090:CDS 40.0%
TATCCAGACCAATATGGAAG+AGG - chr8_1:64510138-64510157 None:intergenic 40.0%
TGTGTTTCTTTCTTAGGAGC+TGG - chr8_1:64510171-64510190 None:intergenic 40.0%
! CGAGTTCATCGACATTGATT+GGG - chr8_1:64510230-64510249 None:intergenic 40.0%
ACGAGTTCATCGACATTGAT+TGG - chr8_1:64510231-64510250 None:intergenic 40.0%
ATCAATGTCGATGAACTCGT+TGG + chr8_1:64510231-64510250 Msa1207090:CDS 40.0%
GGCATGTCAAAACTGAGTTT+AGG + chr8_1:64510252-64510271 Msa1207090:CDS 40.0%
! GGTGAAACTATTGGTGATAC+TGG + chr8_1:64510273-64510292 Msa1207090:CDS 40.0%
TTTCATACAACTCCAGCTTG+TGG + chr8_1:64510351-64510370 Msa1207090:CDS 40.0%
TTCATACAACTCCAGCTTGT+GGG + chr8_1:64510352-64510371 Msa1207090:CDS 40.0%
! TTTTACTTGCCCTTCCAGAA+TGG + chr8_1:64510455-64510474 Msa1207090:three_prime_UTR 40.0%
! CTAGGTTAACCATTCTGGAA+GGG - chr8_1:64510467-64510486 None:intergenic 40.0%
ACTAGGTTAACCATTCTGGA+AGG - chr8_1:64510468-64510487 None:intergenic 40.0%
ACAATCTCCGAACCAATCCA+CGG + chr8_1:64507151-64507170 Msa1207090:five_prime_UTR 45.0%
!! ATGTTTGGTTTGGTCTCCCT+CGG - chr8_1:64507323-64507342 None:intergenic 45.0%
!! GCTTTGAAGATCCGAATCAC+AGG - chr8_1:64507406-64507425 None:intergenic 45.0%
ACGGGTCATGATTTCTGAAC+CGG - chr8_1:64507455-64507474 None:intergenic 45.0%
TGTTCTCATTGCAGCCACAA+TGG + chr8_1:64507478-64507497 Msa1207090:CDS 45.0%
GTTCTCATTGCAGCCACAAT+GGG + chr8_1:64507479-64507498 Msa1207090:CDS 45.0%
! TTCTTGAGTTGTGCCCATTG+TGG - chr8_1:64507495-64507514 None:intergenic 45.0%
AACAGCTTCACACCACGATT+TGG - chr8_1:64507523-64507542 None:intergenic 45.0%
AATCGTGGTGTGAAGCTGTT+TGG + chr8_1:64507523-64507542 Msa1207090:CDS 45.0%
!! GATCCGGAAAAGTGCTAGTA+TGG + chr8_1:64507564-64507583 Msa1207090:CDS 45.0%
GGTATTCAAAAGTCCAGACC+CGG - chr8_1:64507614-64507633 None:intergenic 45.0%
! GGGTCTGGACTTTTGAATAC+CGG + chr8_1:64507613-64507632 Msa1207090:CDS 45.0%
! GGTCTGGACTTTTGAATACC+GGG + chr8_1:64507614-64507633 Msa1207090:CDS 45.0%
AATACCGGGTCAAATACTCC+TGG + chr8_1:64507628-64507647 Msa1207090:CDS 45.0%
!! TGAACCAGGAGTATTTGACC+CGG - chr8_1:64507635-64507654 None:intergenic 45.0%
TCAAATACTCCTGGTTCACC+TGG + chr8_1:64507637-64507656 Msa1207090:CDS 45.0%
AACCATCAGCACCATGATCA+GGG - chr8_1:64507669-64507688 None:intergenic 45.0%
TAACCATCAGCACCATGATC+AGG - chr8_1:64507670-64507689 None:intergenic 45.0%
!! GATCATGGTGCTGATGGTTA+TGG + chr8_1:64507670-64507689 Msa1207090:CDS 45.0%
! TGCTGATGGTTATGGTTCTG+AGG + chr8_1:64507678-64507697 Msa1207090:CDS 45.0%
!!! GGTTCTGAGGATTTTGTTCC+TGG + chr8_1:64507691-64507710 Msa1207090:CDS 45.0%
CCCTAATGATCTGCAAGCAT+TGG + chr8_1:64508336-64508355 Msa1207090:intron 45.0%
GCCAATGCTTGCAGATCATT+AGG - chr8_1:64508340-64508359 None:intergenic 45.0%
! ACTATATGGTTCGGCTCAAG+TGG + chr8_1:64508376-64508395 Msa1207090:intron 45.0%
! TTTTTGTCCAGGTCGAACTC+TGG + chr8_1:64508474-64508493 Msa1207090:intron 45.0%
TGTCTTGAACCTTCGGGAAA+GGG - chr8_1:64508511-64508530 None:intergenic 45.0%
TACTCACTCTTGGGAAGGAT+GGG - chr8_1:64508676-64508695 None:intergenic 45.0%
ATCCTTCCCAAGAGTGAGTA+GGG + chr8_1:64508676-64508695 Msa1207090:intron 45.0%
GTCAGCTTCAATGGGGATTA+CGG + chr8_1:64508908-64508927 Msa1207090:intron 45.0%
ATCAAGGACACCTACTCAAG+TGG + chr8_1:64509082-64509101 Msa1207090:CDS 45.0%
TCAGGCAAAGCAATGTGTCT+AGG + chr8_1:64509129-64509148 Msa1207090:CDS 45.0%
!! AAACATGGCTCTGGGGTATT+TGG + chr8_1:64509488-64509507 Msa1207090:intron 45.0%
AAACCAACCAGGGAACTAGT+TGG - chr8_1:64509562-64509581 None:intergenic 45.0%
AAAAACGGTTGAACCAGCCA+TGG - chr8_1:64509625-64509644 None:intergenic 45.0%
CAGAAGGAAAAGGAAAAGCG+AGG - chr8_1:64509826-64509845 None:intergenic 45.0%
! TGCGGTACCATTGAAGTATC+AGG - chr8_1:64509901-64509920 None:intergenic 45.0%
TCACATTCTTCATCGAGTGG+AGG - chr8_1:64509988-64510007 None:intergenic 45.0%
GACTCACATTCTTCATCGAG+TGG - chr8_1:64509991-64510010 None:intergenic 45.0%
CGATGAAGAATGTGAGTCCA+TGG + chr8_1:64509993-64510012 Msa1207090:CDS 45.0%
! GCATTGATGTCGGGCTTTAA+TGG - chr8_1:64510057-64510076 None:intergenic 45.0%
GGAAGAGGAAAAGGGAAGAA+TGG - chr8_1:64510123-64510142 None:intergenic 45.0%
GGACTGTATCCAGACCAATA+TGG - chr8_1:64510144-64510163 None:intergenic 45.0%
TTGGGCTCTTGGAATGTACT+GGG - chr8_1:64510212-64510231 None:intergenic 45.0%
ATTGGGCTCTTGGAATGTAC+TGG - chr8_1:64510213-64510232 None:intergenic 45.0%
! ATCGACATTGATTGGGCTCT+TGG - chr8_1:64510223-64510242 None:intergenic 45.0%
AGTTTACGAGACAGAGTCGA+GGG - chr8_1:64510300-64510319 None:intergenic 45.0%
TAGTTTACGAGACAGAGTCG+AGG - chr8_1:64510301-64510320 None:intergenic 45.0%
AGAAGGTCCTTCTAGACAGT+CGG + chr8_1:64510326-64510345 Msa1207090:CDS 45.0%
TGAAAAGCCGACTGTCTAGA+AGG - chr8_1:64510336-64510355 None:intergenic 45.0%
GCTTGTAGGCAGTAGTATCT+AGG + chr8_1:64510500-64510519 Msa1207090:three_prime_UTR 45.0%
!!! AATATTATATTTTTGATTTT+TGG + chr8_1:64507907-64507926 Msa1207090:intron 5.0%
! TGGTTCGGAGATTGTTGACG+TGG - chr8_1:64507146-64507165 None:intergenic 50.0%
!! TGTTTGGTTTGGTCTCCCTC+GGG - chr8_1:64507322-64507341 None:intergenic 50.0%
ATGCCTCGGATCCTGTGATT+CGG + chr8_1:64507392-64507411 Msa1207090:five_prime_UTR 50.0%
TTCACCTCTCTCGTTCGATC+CGG + chr8_1:64507433-64507452 Msa1207090:five_prime_UTR 50.0%
GCTGCAATGAGAACAACGAC+GGG - chr8_1:64507473-64507492 None:intergenic 50.0%
GGCTGCAATGAGAACAACGA+CGG - chr8_1:64507474-64507493 None:intergenic 50.0%
! AGCACTTTTCCGGATCCCAT+CGG - chr8_1:64507560-64507579 None:intergenic 50.0%
! CCATGATCAGGGTTTTCACC+AGG - chr8_1:64507658-64507677 None:intergenic 50.0%
CCTGGTGAAAACCCTGATCA+TGG + chr8_1:64507655-64507674 Msa1207090:CDS 50.0%
! AACCCTGATCATGGTGCTGA+TGG + chr8_1:64507664-64507683 Msa1207090:CDS 50.0%
CGGGAAGTAGAAGAAGAACC+AGG - chr8_1:64507712-64507731 None:intergenic 50.0%
GGTATAAGTCTCAGGCCATG+TGG + chr8_1:64508064-64508083 Msa1207090:intron 50.0%
GTGCCTAATTATGGGGGATG+AGG + chr8_1:64508158-64508177 Msa1207090:intron 50.0%
GGACCTCATCCCCCATAATT+AGG - chr8_1:64508164-64508183 None:intergenic 50.0%
ATTAAATACCGGGCTGTGGC+AGG + chr8_1:64508282-64508301 Msa1207090:intron 50.0%
GGGGTGAAACAAGCTAGACA+AGG - chr8_1:64508319-64508338 None:intergenic 50.0%
CAGGTCGAACTCTGGATTAC+CGG + chr8_1:64508482-64508501 Msa1207090:intron 50.0%
GTGTCTTGAACCTTCGGGAA+AGG - chr8_1:64508512-64508531 None:intergenic 50.0%
CTACTCACTCTTGGGAAGGA+TGG - chr8_1:64508677-64508696 None:intergenic 50.0%
CATCCTTCCCAAGAGTGAGT+AGG + chr8_1:64508675-64508694 Msa1207090:intron 50.0%
TCTAGGCCCTACTCACTCTT+GGG - chr8_1:64508685-64508704 None:intergenic 50.0%
ATCTAGGCCCTACTCACTCT+TGG - chr8_1:64508686-64508705 None:intergenic 50.0%
CTATGTTCCTCCTCAGTCCA+TGG - chr8_1:64508993-64509012 None:intergenic 50.0%
GGATTGAACAAGCTGGGCAA+AGG + chr8_1:64509026-64509045 Msa1207090:CDS 50.0%
ACAAGCTGGGCAAAGGTGAT+TGG + chr8_1:64509033-64509052 Msa1207090:CDS 50.0%
GGCAAAGCAATGTGTCTAGG+CGG + chr8_1:64509132-64509151 Msa1207090:CDS 50.0%
ATGTGTCTAGGCGGAAGAGA+CGG + chr8_1:64509141-64509160 Msa1207090:CDS 50.0%
! GGAACTAGTTGGTTCCCTCT+CGG - chr8_1:64509551-64509570 None:intergenic 50.0%
GAACCAACTAGTTCCCTGGT+TGG + chr8_1:64509556-64509575 Msa1207090:intron 50.0%
GTTGAACCGCAGTTCAACCA+TGG + chr8_1:64509605-64509624 Msa1207090:intron 50.0%
AACCAGCCATGGTTGAACTG+CGG - chr8_1:64509614-64509633 None:intergenic 50.0%
GCAGGCACCTGATACTTCAA+TGG + chr8_1:64509891-64509910 Msa1207090:intron 50.0%
CATTCTTCATCGAGTGGAGG+AGG - chr8_1:64509985-64510004 None:intergenic 50.0%
! GACGCTTGTGCATTGATGTC+GGG - chr8_1:64510066-64510085 None:intergenic 50.0%
! CGACGCTTGTGCATTGATGT+CGG - chr8_1:64510067-64510086 None:intergenic 50.0%
CGACATCAATGCACAAGCGT+CGG + chr8_1:64510065-64510084 Msa1207090:CDS 50.0%
! TCTTTCTTAGGAGCTGGCTC+AGG - chr8_1:64510165-64510184 None:intergenic 50.0%
CTCTTGGAATGTACTGGGGT+TGG - chr8_1:64510207-64510226 None:intergenic 50.0%
TGGGCTCTTGGAATGTACTG+GGG - chr8_1:64510211-64510230 None:intergenic 50.0%
GTTTACGAGACAGAGTCGAG+GGG - chr8_1:64510299-64510318 None:intergenic 50.0%
GGAGATTGTTGACGTGGCAG+AGG - chr8_1:64507140-64507159 None:intergenic 55.0%
TCTGCAGCAGCAAAACCCGA+GGG + chr8_1:64507304-64507323 Msa1207090:five_prime_UTR 55.0%
GATCCGAATCACAGGATCCG+AGG - chr8_1:64507398-64507417 None:intergenic 55.0%
TGAACCGGATCGAACGAGAG+AGG - chr8_1:64507440-64507459 None:intergenic 55.0%
!! CTTAGCCACTATAGCGGGTC+CGG + chr8_1:64507592-64507611 Msa1207090:CDS 55.0%
!! TTAGCCACTATAGCGGGTCC+GGG + chr8_1:64507593-64507612 Msa1207090:CDS 55.0%
! GGGTTTTCACCAGGTGAACC+AGG - chr8_1:64507649-64507668 None:intergenic 55.0%
CGGTAATCCAGAGTTCGACC+TGG - chr8_1:64508484-64508503 None:intergenic 55.0%
GTCGAACTCTGGATTACCGG+AGG + chr8_1:64508485-64508504 Msa1207090:intron 55.0%
CACTCTTGGGAAGGATGGGA+AGG - chr8_1:64508672-64508691 None:intergenic 55.0%
GTGATTGGCGTGGAATTGCC+AGG + chr8_1:64509048-64509067 Msa1207090:CDS 55.0%
AATAGCCGGACCGAACCAAC+CGG + chr8_1:64509520-64509539 Msa1207090:intron 55.0%
GAGGGAACCAACTAGTTCCC+TGG + chr8_1:64509552-64509571 Msa1207090:intron 55.0%
AACCGCAGTTCAACCATGGC+TGG + chr8_1:64509609-64509628 Msa1207090:intron 55.0%
CACAGAACAGTCCCACAAGC+TGG - chr8_1:64510366-64510385 None:intergenic 55.0%
CTCTGCAGCAGCAAAACCCG+AGG + chr8_1:64507303-64507322 Msa1207090:five_prime_UTR 60.0%
GTCAAACACCTGCCACAGCC+CGG - chr8_1:64508293-64508312 None:intergenic 60.0%
AACCTTCGGGAAAGGGCCTC+CGG - chr8_1:64508504-64508523 None:intergenic 60.0%
GGCCCTACTCACTCTTGGGA+AGG - chr8_1:64508681-64508700 None:intergenic 60.0%
! TGCAGGCACTCCATGGACTG+AGG + chr8_1:64508980-64508999 Msa1207090:intron 60.0%
! AGGCACTCCATGGACTGAGG+AGG + chr8_1:64508983-64509002 Msa1207090:intron 60.0%
CTGGGCAAAGGTGATTGGCG+TGG + chr8_1:64509038-64509057 Msa1207090:CDS 60.0%
! GCGTGACTGGCCACTTGAGT+AGG - chr8_1:64509095-64509114 None:intergenic 60.0%
!! CACAACCGGTTGGTTCGGTC+CGG - chr8_1:64509528-64509547 None:intergenic 60.0%
! CTCGGCACAACCGGTTGGTT+CGG - chr8_1:64509533-64509552 None:intergenic 60.0%
AACCAACCGGTTGTGCCGAG+AGG + chr8_1:64509533-64509552 Msa1207090:intron 60.0%
ACCAACCGGTTGTGCCGAGA+GGG + chr8_1:64509534-64509553 Msa1207090:intron 60.0%
TGGTTCCCTCTCGGCACAAC+CGG - chr8_1:64509542-64509561 None:intergenic 60.0%
GTGGAGGAGGAGCAGGCAAA+GGG - chr8_1:64509972-64509991 None:intergenic 60.0%
AGTGGAGGAGGAGCAGGCAA+AGG - chr8_1:64509973-64509992 None:intergenic 60.0%
TCATCGAGTGGAGGAGGAGC+AGG - chr8_1:64509979-64509998 None:intergenic 60.0%
! GTCGGGCTTTAATGGGGCAG+AGG - chr8_1:64510049-64510068 None:intergenic 60.0%
!! TGCACAAGCGTCGGCTTACC+CGG + chr8_1:64510074-64510093 Msa1207090:CDS 60.0%
CAGACCCGGACCCGCTATAG+TGG - chr8_1:64507600-64507619 None:intergenic 65.0%
!! CACTATAGCGGGTCCGGGTC+TGG + chr8_1:64507598-64507617 Msa1207090:CDS 65.0%
TACCGGAGGCCCTTTCCCGA+AGG + chr8_1:64508499-64508518 Msa1207090:intron 65.0%
TCCCTCTCGGCACAACCGGT+TGG - chr8_1:64509538-64509557 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 64507105 64510686 64507105 ID=Msa1207090;Name=Msa1207090
chr8_1 mRNA 64507105 64510686 64507105 ID=Msa1207090-mRNA-1;Parent=Msa1207090;Name=Msa1207090-mRNA-1;_AED=0.15;_eAED=0.15;_QI=361|1|1|1|1|1|3|300|326
chr8_1 exon 64507105 64507745 64507105 ID=Msa1207090-mRNA-1:exon:21082;Parent=Msa1207090-mRNA-1
chr8_1 exon 64508985 64509193 64508985 ID=Msa1207090-mRNA-1:exon:21083;Parent=Msa1207090-mRNA-1
chr8_1 exon 64509895 64510686 64509895 ID=Msa1207090-mRNA-1:exon:21084;Parent=Msa1207090-mRNA-1
chr8_1 five_prime_UTR 64507105 64507465 64507105 ID=Msa1207090-mRNA-1:five_prime_utr;Parent=Msa1207090-mRNA-1
chr8_1 CDS 64507466 64507745 64507466 ID=Msa1207090-mRNA-1:cds;Parent=Msa1207090-mRNA-1
chr8_1 CDS 64508985 64509193 64508985 ID=Msa1207090-mRNA-1:cds;Parent=Msa1207090-mRNA-1
chr8_1 CDS 64509895 64510386 64509895 ID=Msa1207090-mRNA-1:cds;Parent=Msa1207090-mRNA-1
chr8_1 three_prime_UTR 64510387 64510686 64510387 ID=Msa1207090-mRNA-1:three_prime_utr;Parent=Msa1207090-mRNA-1
Gene Sequence

>Msa1207090

ATGACCCGTCGTTGTTCTCATTGCAGCCACAATGGGCACAACTCAAGAACTTGTCCAAATCGTGGTGTGAAGCTGTTTGGAGTAAGATTAACCGATGGGATCCGGAAAAGTGCTAGTATGGGTAATCTTAGCCACTATAGCGGGTCCGGGTCTGGACTTTTGAATACCGGGTCAAATACTCCTGGTTCACCTGGTGAAAACCCTGATCATGGTGCTGATGGTTATGGTTCTGAGGATTTTGTTCCTGGTTCTTCTTCTACTTCCCGTGAAAGAAAAAAGGGCACTCCATGGACTGAGGAGGAACATAGAATGTTTTTACTTGGATTGAACAAGCTGGGCAAAGGTGATTGGCGTGGAATTGCCAGGAACTATGTTATATCAAGGACACCTACTCAAGTGGCCAGTCACGCTCAAAAATATTTCATCAGGCAAAGCAATGTGTCTAGGCGGAAGAGACGGTCCAGCCTGTTTGATATTGTTGCAGATGATGCACCTGATACTTCAATGGTACCGCAAGACTTCTTGTCAGCTAATCAACTACAAACTGAAACAGAAGGCAATAACCCTTTGCCTGCTCCTCCTCCACTCGATGAAGAATGTGAGTCCATGGATTCTACAAACTCAAACGATGGAGAGTCTGCCTCTGCCCCATTAAAGCCCGACATCAATGCACAAGCGTCGGCTTACCCGGTAGTATATCCAGCATATTATTCTCCATTCTTCCCTTTTCCTCTTCCATATTGGTCTGGATACAGTCCTGAGCCAGCTCCTAAGAAAGAAACACATGAAGTGGTGAAGCCAACCCCAGTACATTCCAAGAGCCCAATCAATGTCGATGAACTCGTTGGCATGTCAAAACTGAGTTTAGGTGAAACTATTGGTGATACTGGCCCCTCGACTCTGTCTCGTAAACTACTTGAAGAAGGTCCTTCTAGACAGTCGGCTTTTCATACAACTCCAGCTTGTGGGACTGTTCTGTGA
Protein sequence

>Msa1207090

MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGIRKSASMGNLSHYSGSGSGLLNTGSNTPGSPGENPDHGADGYGSEDFVPGSSSTSRERKKGTPWTEEEHRMFLLGLNKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADDAPDTSMVPQDFLSANQLQTETEGNNPLPAPPPLDEECESMDSTNSNDGESASAPLKPDINAQASAYPVVYPAYYSPFFPFPLPYWSGYSPEPAPKKETHEVVKPTPVHSKSPINVDELVGMSKLSLGETIGDTGPSTLSRKLLEEGPSRQSAFHTTPACGTVL*