AlfalfaGEDB | Msa1435760

M. sativa cultivar zhongmu-4 / Msa1435760

KEGG: -
GO: GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0034220 GO:0034755 GO:0042221 GO:0042592 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071421 GO:0097577 GO:0098655 GO:0098660 GO:0098662 GO:0098771
PFAM: PF01988.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1435760	XP_003592125.1	96.396	222	2	2	1	221	1	217	1.38e-148	422

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1435760	sp\|Q9M2C0\|VITH4_ARATH	68.447	206	53	3	19	221	2	198	2.43e-99	290

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1435760	G7ID02	96.396	222	2	2	1	221	1	217	6.60e-149	422

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005350	Msa1435760	0.800965	1.125342e-48	-8.615850e-47
Msa0053900	Msa1435760	0.804572	2.025466e-49	-8.615850e-47
Msa0060600	Msa1435760	0.811236	7.745761e-51	-8.615850e-47
Msa0099730	Msa1435760	0.801821	7.513232e-49	-8.615850e-47
Msa0101060	Msa1435760	0.804611	1.987536e-49	-8.615850e-47
Msa0105340	Msa1435760	0.802246	6.145040e-49	-8.615850e-47
Msa0148360	Msa1435760	0.803012	4.271721e-49	-8.615850e-47
Msa0617830	Msa1435760	0.803392	3.563553e-49	-8.615850e-47
Msa0620640	Msa1435760	0.801743	7.794822e-49	-8.615850e-47
Msa0656270	Msa1435760	0.817915	2.573707e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1435760	MtrunA17_Chr1g0202031	96.396	222	2	2	1	221	1	217	1.27e-152	422
Msa1435760	MtrunA17_Chr6g0463641	79.167	216	38	3	6	221	2	210	2.71e-107	307
Msa1435760	MtrunA17_Chr4g0050821	65.550	209	71	1	13	221	17	224	1.23e-85	253
Msa1435760	MtrunA17_Chr4g0050841	66.832	202	66	1	20	221	24	224	1.56e-85	253
Msa1435760	MtrunA17_Chr4g0050831	66.832	202	66	1	20	221	24	224	5.80e-85	251
Msa1435760	MtrunA17_Chr4g0050811	62.085	211	72	2	15	221	33	239	3.27e-84	249
Msa1435760	MtrunA17_Chr6g0479471	68.783	189	49	2	28	216	29	207	4.37e-79	236
Msa1435760	MtrunA17_Chr2g0278621	68.783	189	49	2	28	216	29	207	4.88e-79	236
Msa1435760	MtrunA17_Chr4g0050851	58.333	216	83	3	9	221	20	231	5.33e-71	216

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1435760	AT3G43660.1	68.447	206	53	3	19	221	2	198	2.47e-100	290
Msa1435760	AT3G43630.1	72.549	204	42	4	18	218	2	194	8.10e-94	273
Msa1435760	AT1G21140.1	70.192	208	49	4	18	221	2	200	1.19e-93	273
Msa1435760	AT1G76800.1	71.707	205	48	1	17	221	2	196	1.20e-92	270
Msa1435760	AT3G25190.1	59.434	212	81	2	14	221	7	217	2.09e-68	209

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Find 43 sgRNAs with CRISPR-Local

Find 57 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGACAATATTGAAAG+AGG	0.486922	tig0027769:+2321	Msa1435760:CDS
AAAGATTATAAGATAAGGGT+AGG	0.576224	tig0027769:+2471	Msa1435760:CDS
AAGAGGTAATAATATTGAAG+AGG	0.573020	tig0027769:+2338	Msa1435760:CDS
ACCAAGTTGATTGGGTCAAG+TGG	0.451627	tig0027769:+2633	Msa1435760:CDS
AGCAAAACCCGACAAGATCA+TGG	0.526585	tig0027769:-2214	None:intergenic
AGTGGTAAGGTCTTGTTTGA+GGG	0.418892	tig0027769:+2566	Msa1435760:CDS
AGTGTTGGGTAAGGCACCAG+TGG	0.645814	tig0027769:+2548	Msa1435760:CDS
ATAAAAGCCATGATCTTGTC+GGG	0.488331	tig0027769:+2207	Msa1435760:CDS
ATCACAATGGCTACGTGCCG+CGG	0.590039	tig0027769:+2113	Msa1435760:CDS
ATCATTAGCTCCTAAAACCG+CGG	0.609497	tig0027769:-2130	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCATCACTTTCGATCTCTA+GGG	-	tig0027769:2076-2095	None:intergenic	35.0%
ATTCATCACTTTCGATCTCT+AGG	-	tig0027769:2077-2096	None:intergenic	35.0%
TTCAACAGCATCACTAATGA+TGG	+	tig0027769:2161-2180	Msa1435760:CDS	35.0%
TCAACAGCATCACTAATGAT+GGG	+	tig0027769:2162-2181	Msa1435760:CDS	35.0%
CATAAAAGCCATGATCTTGT+CGG	+	tig0027769:2206-2225	Msa1435760:CDS	35.0%
ATAAAAGCCATGATCTTGTC+GGG	+	tig0027769:2207-2226	Msa1435760:CDS	35.0%
ATCATTAGCTCCTAAAACCG+CGG	-	tig0027769:2133-2152	None:intergenic	40.0%
ATGAAAGATGCTGCAAGAAG+TGG	-	tig0027769:2450-2469	None:intergenic	40.0%
TTGCTTTGGTTGTGTTTGGT+TGG	+	tig0027769:2517-2536	Msa1435760:CDS	40.0%
TTTGGTTGTGTTTGGTTGGT+TGG	+	tig0027769:2521-2540	Msa1435760:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0027769	gene	1997	2662	1997	ID=Msa1435760;Name=Msa1435760
tig0027769	mRNA	1997	2662	1997	ID=Msa1435760-mRNA-1;Parent=Msa1435760;Name=Msa1435760-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|221
tig0027769	exon	1997	2662	1997	ID=Msa1435760-mRNA-1:exon:9867;Parent=Msa1435760-mRNA-1
tig0027769	CDS	1997	2662	1997	ID=Msa1435760-mRNA-1:cds;Parent=Msa1435760-mRNA-1

Gene Sequence

>Msa1435760

ATGGCATCTAATAATTCATCCCTTAACCAAACAAAATTTGTACATCAAAACAATGACCATGATCAACAAAATGCAACCCTAGAGATCGAAAGTGATGAATTTGATTACTCAAAAAGATCACAATGGCTACGTGCCGCGGTTTTAGGAGCTAATGATGGATTAGTTTCAACAGCATCACTAATGATGGGTGTAGGAGCAGTGAAACAAGACATAAAAGCCATGATCTTGTCGGGTTTTGCTGGACTTGTAGCTGGTGCATGTAGCATGGCAATAGGTGAGTTTGTATCTGTTTACTCACAACTTGACATTGAAATTGCTCAATTAAAAAGAGACAATATTGAAAGAGGTAATAATATTGAAGAGGAAGATGTCATTGAGAAAGAAAGTTTGCCAAATCCTTTACAAGCAGCAGCAGCTTCAGCTTTAGCATTTTCAATTGGTGCAATGGTGCCACTTCTTGCAGCATCTTTCATTAAAGATTATAAGATAAGGGTAGGTGTTGTTTTGGGAGCAGTTAGTTTTGCTTTGGTTGTGTTTGGTTGGTTGGGTGCAGTGTTGGGTAAGGCACCAGTGGTAAGGTCTTGTTTGAGGGTCTTGCTTGGAGGTTGGATTGCTATGGCCATAACTTTTGGACTAACCAAGTTGATTGGGTCAAGTGGGCTATAG

Protein sequence

>Msa1435760

MASNNSSLNQTKFVHQNNDHDQQNATLEIESDEFDYSKRSQWLRAAVLGANDGLVSTASLMMGVGAVKQDIKAMILSGFAGLVAGACSMAIGEFVSVYSQLDIEIAQLKRDNIERGNNIEEEDVIEKESLPNPLQAAAASALAFSIGAMVPLLAASFIKDYKIRVGVVLGAVSFALVVFGWLGAVLGKAPVVRSCLRVLLGGWIAMAITFGLTKLIGSSGL*