AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1102180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1102180 MtrunA17_Chr7g0229961 99.017 407 4 0 1 407 141 547 0.0 845
Msa1102180 MtrunA17_Chr8g0343421 98.771 407 5 0 1 407 140 546 0.0 841
Msa1102180 MtrunA17_Chr5g0400451 24.920 313 203 9 104 398 171 469 6.01e-17 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1102180 AT4G04770.1 88.206 407 48 0 1 407 151 557 0.0 773
Msa1102180 AT5G44316.1 62.228 413 76 5 1 407 132 470 7.15e-179 507
Msa1102180 AT1G32500.1 24.923 325 222 6 74 388 148 460 6.46e-19 89.0

Find 111 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATCATATATCTTAAAATT+TGG 0.071231 7_3:-34672388 None:intergenic
TAACTGATCTTCACCAATTT+TGG 0.088841 7_3:-34671886 None:intergenic
AATGAGCTTCCCGATGAATT+TGG 0.191847 7_3:+34671987 Msa1102180:CDS
GATTTGGTTAGGAATTATTT+AGG 0.202220 7_3:+34669961 Msa1102180:CDS
CAGTGTGATTCCATGCTTAT+TGG 0.219953 7_3:+34670642 Msa1102180:CDS
TAGGAGTATGGTGGAGTATT+TGG 0.220424 7_3:+34670161 Msa1102180:CDS
TTAATCGAGGGTTTCTTCTT+AGG 0.225416 7_3:-34669739 None:intergenic
GCCATTGGTTCTTGAAATTC+TGG 0.233614 7_3:+34672099 Msa1102180:three_prime_UTR
AAACGATTCTGTTCGTTTAA+CGG 0.286876 7_3:-34669817 None:intergenic
CATCATATATCTTAAAATTT+GGG 0.289759 7_3:-34672387 None:intergenic
GTTTGAAACTTGATGTTTCA+TGG 0.304729 7_3:-34672231 None:intergenic
ATTATAGAGATCATACATTA+AGG 0.305403 7_3:-34672253 None:intergenic
AAATAATTCCTAACCAAATC+TGG 0.322490 7_3:-34669958 None:intergenic
GCTTGTTCAGGTTCAGTCTA+AGG 0.336826 7_3:+34670596 Msa1102180:CDS
CTGTTATAGAGGGCTTGTTC+AGG 0.372714 7_3:+34670584 Msa1102180:CDS
TGAGATACTTCGATAAGCTT+GGG 0.373612 7_3:+34669791 Msa1102180:CDS
TTAAGATATATGATGTTGAT+TGG 0.374781 7_3:+34672395 Msa1102180:three_prime_UTR
ATTTGGTTAGGAATTATTTA+GGG 0.377879 7_3:+34669962 Msa1102180:CDS
CGTTGATTGTGGCGGATGAT+AGG 0.379139 7_3:+34670142 Msa1102180:CDS
GAAGTATCCGAGCGTTGTTT+TGG 0.379206 7_3:+34670413 Msa1102180:CDS
GTTCTCAGAGGCAGTGTGTC+TGG 0.384959 7_3:+34672124 Msa1102180:three_prime_UTR
TTTCTATTGCAACTACTCAT+AGG 0.386827 7_3:+34669875 Msa1102180:CDS
TTCGATTTCGGATGCTGTTA+AGG 0.387550 7_3:+34669930 Msa1102180:CDS
AGTATTCGACTGTGCAGAAT+TGG 0.387705 7_3:+34670268 Msa1102180:CDS
TGTTAAGGAGTATCCAGATT+TGG 0.388881 7_3:+34669945 Msa1102180:CDS
GAGGCTAGTACGTCCAAAAT+TGG 0.390303 7_3:+34671873 Msa1102180:CDS
AGGATTAATGCGTTGGAGAC+GGG 0.399896 7_3:+34670105 Msa1102180:CDS
GTTGAGTTGTATTGTGGGGA+GGG 0.400958 7_3:+34670234 Msa1102180:CDS
AGGAGTATCCAGATTTGGTT+AGG 0.403665 7_3:+34669950 Msa1102180:CDS
CTCATGAGCTTGAAGCTTGA+GGG 0.405460 7_3:+34672026 Msa1102180:CDS
TATATCTTAAAATTTGGGTT+AGG 0.426054 7_3:-34672382 None:intergenic
GCAATGGCTGCTATGATCTC+TGG 0.432036 7_3:+34671945 Msa1102180:CDS
AGATGTGTACATGATGTATA+TGG 0.432178 7_3:+34672149 Msa1102180:three_prime_UTR
TAACTCAAACCTTACAAAAC+CGG 0.432863 7_3:-34672357 None:intergenic
TAATTATCAACAGGCTGATA+CGG 0.438638 7_3:+34670482 Msa1102180:CDS
AGACTGGGTCCGCGATTACT+TGG 0.440480 7_3:+34670391 Msa1102180:CDS
ATATCTTGAAAATCTATAGT+TGG 0.442228 7_3:-34669700 None:intergenic
TTGAGATACTTCGATAAGCT+TGG 0.447006 7_3:+34669790 Msa1102180:CDS
TCGTGCTCAATTCTTGCTGA+TGG 0.448471 7_3:-34671852 None:intergenic
TTTGACGAATAATTATCAAC+AGG 0.459812 7_3:+34670473 Msa1102180:CDS
GTATTTCTGCTGGACATTCA+AGG 0.462786 7_3:+34670559 Msa1102180:CDS
ACGATATGTTTATAAGTGAT+AGG 0.465794 7_3:+34672316 Msa1102180:three_prime_UTR
ATATCGAAGGGTATTTCTGC+TGG 0.472937 7_3:+34670549 Msa1102180:CDS
TATCTTGAAAATCTATAGTT+GGG 0.473477 7_3:-34669699 None:intergenic
CGGTTGTTGAGTTGTATTGT+GGG 0.475492 7_3:+34670229 Msa1102180:CDS
TGGTATGCGGGTGATGAGAA+TGG 0.481158 7_3:+34670288 Msa1102180:CDS
TGTGGCGGATGATAGGAGTA+TGG 0.485495 7_3:+34670149 Msa1102180:CDS
ATCGGACACTTAACACCCTT+CGG 0.492822 7_3:-34670063 None:intergenic
ACCTCGGAGCCAAATTCATC+GGG 0.494987 7_3:-34671996 None:intergenic
GGGACTAAGATGATACATAA+AGG 0.495409 7_3:+34670504 Msa1102180:CDS
CATTCAAGGAACTGTTATAG+AGG 0.498044 7_3:+34670573 Msa1102180:CDS
TATGTTTATAAGTGATAGGC+AGG 0.500021 7_3:+34672320 Msa1102180:three_prime_UTR
GCAGGCCACCCTTTAAAAGC+CGG 0.505544 7_3:+34672338 Msa1102180:three_prime_UTR
TTTGAATTAGCTCAGGCCAT+TGG 0.506299 7_3:+34672084 Msa1102180:three_prime_UTR
AATTATCAACAGGCTGATAC+GGG 0.507180 7_3:+34670483 Msa1102180:CDS
GGTGATGAGAATGGGAAAGG+TGG 0.510158 7_3:+34670297 Msa1102180:CDS
TGTTGAGTTGTATTGTGGGG+AGG 0.511336 7_3:+34670233 Msa1102180:CDS
TCGAAGTATCTCAAAAGCTC+AGG 0.512282 7_3:-34669781 None:intergenic
TAGGATTAATGCGTTGGAGA+CGG 0.522422 7_3:+34670104 Msa1102180:CDS
ACTCATGAGCTTGAAGCTTG+AGG 0.525889 7_3:+34672025 Msa1102180:CDS
CGTGGACTCAGGTGGAGACT+GGG 0.526944 7_3:+34670376 Msa1102180:CDS
CACCTCGGAGCCAAATTCAT+CGG 0.533895 7_3:-34671997 None:intergenic
ATTTGAGAGGACGTTGATTG+TGG 0.541228 7_3:+34670131 Msa1102180:CDS
TTCTTCTAAGCTATTAATCG+AGG 0.547950 7_3:-34669752 None:intergenic
GTGATGAGAATGGGAAAGGT+GGG 0.548593 7_3:+34670298 Msa1102180:CDS
CAAGCTTCAAGCTCATGAGT+TGG 0.553479 7_3:-34672022 None:intergenic
GGATTAATGCGTTGGAGACG+GGG 0.554424 7_3:+34670106 Msa1102180:CDS
GGTATGCGGGTGATGAGAAT+GGG 0.557534 7_3:+34670289 Msa1102180:CDS
TTGGAGGGTGATGAGAGTGT+TGG 0.558769 7_3:+34670432 Msa1102180:CDS
AGGAAGACACTTGAGAAGGC+TGG 0.560350 7_3:+34669895 Msa1102180:CDS
TCACCCTCCAAAACAACGCT+CGG 0.561244 7_3:-34670420 None:intergenic
GAGATACTTCGATAAGCTTG+GGG 0.563487 7_3:+34669792 Msa1102180:CDS
AAAGAGTAGGATAATATCGA+AGG 0.564748 7_3:+34670536 Msa1102180:CDS
GCGGTTGTTGAGTTGTATTG+TGG 0.564872 7_3:+34670228 Msa1102180:CDS
CGCATTAATCCTAAAATACG+TGG 0.567141 7_3:-34670094 None:intergenic
TCTTCTAAGCTATTAATCGA+GGG 0.569205 7_3:-34669751 None:intergenic
TTCATGGATTCTATGCGGCA+TGG 0.569752 7_3:-34672215 None:intergenic
TCCAGAATTTCAAGAACCAA+TGG 0.570798 7_3:-34672100 None:intergenic
GTCGAAGATATCGTGGACTC+AGG 0.570802 7_3:+34670365 Msa1102180:CDS
AAGGAAAGAATACAAAGAGT+AGG 0.571457 7_3:+34670523 Msa1102180:CDS
TGGAGACGGGGCAATTTGAG+AGG 0.580773 7_3:+34670118 Msa1102180:CDS
GCGGGTGATGAGAATGGGAA+AGG 0.581778 7_3:+34670294 Msa1102180:CDS
GAATACATATCCTTACATCC+AGG 0.591093 7_3:+34670680 Msa1102180:CDS
AGTATGGTGGAGTATTTGGA+AGG 0.598035 7_3:+34670165 Msa1102180:CDS
ATTCAAGGAACTGTTATAGA+GGG 0.600696 7_3:+34670574 Msa1102180:CDS
TCATGAGCTTGAAGCTTGAG+GGG 0.600976 7_3:+34672027 Msa1102180:CDS
TTGAAGCTTGAGGGGTCAGT+CGG 0.603318 7_3:+34672035 Msa1102180:CDS
AAGAGTAGGATAATATCGAA+GGG 0.614934 7_3:+34670537 Msa1102180:CDS
AAATACGTGGATATCTGCAT+CGG 0.617924 7_3:-34670081 None:intergenic
GAAGATATCGTGGACTCAGG+TGG 0.621504 7_3:+34670368 Msa1102180:CDS
ACGAAGAGAGGATTGTGTGC+TGG 0.622028 7_3:+34670336 Msa1102180:CDS
TTATTACGCTGCATTGAATG+CGG 0.624878 7_3:+34670008 Msa1102180:CDS
TCCCGATGAATTTGGCTCCG+AGG 0.627231 7_3:+34671995 Msa1102180:CDS
AGCACTATCACCAATAAGCA+TGG 0.629725 7_3:-34670652 None:intergenic
GTAAGAAGTCGAAGATATCG+TGG 0.634199 7_3:+34670358 Msa1102180:CDS
ACTGTGCAGAATTGGTATGC+GGG 0.639721 7_3:+34670276 Msa1102180:CDS
GGCGGATGATAGGAGTATGG+TGG 0.641159 7_3:+34670152 Msa1102180:CDS
GCTCATGAGTTGGTTCACCT+CGG 0.650340 7_3:-34672012 None:intergenic
GCGTAATAATTATCATCACT+AGG 0.656830 7_3:-34669994 None:intergenic
GACTGTGCAGAATTGGTATG+CGG 0.657058 7_3:+34670275 Msa1102180:CDS
TCATAGGAAGACACTTGAGA+AGG 0.657651 7_3:+34669891 Msa1102180:CDS
TGTTCAGGTTCAGTCTAAGG+CGG 0.659200 7_3:+34670599 Msa1102180:CDS
GAAGCTCATTGAAGACATCA+CGG 0.661065 7_3:-34671974 None:intergenic
GTATGGTGGAGTATTTGGAA+GGG 0.671768 7_3:+34670166 Msa1102180:CDS
TGAGAGGACGTTGATTGTGG+CGG 0.679907 7_3:+34670134 Msa1102180:CDS
GATGTTTCATGGATTCTATG+CGG 0.686704 7_3:-34672220 None:intergenic
GAAATTCTGGAAGTTCTCAG+AGG 0.688850 7_3:+34672112 Msa1102180:three_prime_UTR
ATCAGCAAGAATTGAGCACG+AGG 0.694946 7_3:+34671854 Msa1102180:CDS
CGGATACTTCCAAGTAATCG+CGG 0.697357 7_3:-34670400 None:intergenic
GGTTGTTGAGTTGTATTGTG+GGG 0.708201 7_3:+34670230 Msa1102180:CDS
ATTATCAACAGGCTGATACG+GGG 0.731328 7_3:+34670484 Msa1102180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATAGCAATTAATTAT+GGG + chr7_3:34671123-34671142 Msa1102180:intron 10.0%
!! GATAAAATAGCAATTAATTA+TGG + chr7_3:34671122-34671141 Msa1102180:intron 15.0%
!! ATTACAAATATGGAAAAAAA+GGG - chr7_3:34671770-34671789 None:intergenic 15.0%
!! CATCATATATCTTAAAATTT+GGG - chr7_3:34672390-34672409 None:intergenic 15.0%
!! ACATCATATATCTTAAAATT+TGG - chr7_3:34672391-34672410 None:intergenic 15.0%
!! TATCTTGAAAATCTATAGTT+GGG - chr7_3:34669702-34669721 None:intergenic 20.0%
!! ATATCTTGAAAATCTATAGT+TGG - chr7_3:34669703-34669722 None:intergenic 20.0%
!!! TGTTATATTTTGTTCGATTT+CGG + chr7_3:34669918-34669937 Msa1102180:CDS 20.0%
!! ATTTGGTTAGGAATTATTTA+GGG + chr7_3:34669962-34669981 Msa1102180:CDS 20.0%
!! CAGTTAATAATTAATGTCTA+TGG + chr7_3:34670751-34670770 Msa1102180:intron 20.0%
!! AATAATTAATGTCTATGGAT+CGG + chr7_3:34670756-34670775 Msa1102180:intron 20.0%
!! TAGATAACGATAAGAATATA+TGG + chr7_3:34670784-34670803 Msa1102180:intron 20.0%
!! AGATAACGATAAGAATATAT+GGG + chr7_3:34670785-34670804 Msa1102180:intron 20.0%
!!! TTGGATATATTTTCTAAGAT+TGG + chr7_3:34670853-34670872 Msa1102180:intron 20.0%
!! TCTATATTAGTATTACTTCA+AGG - chr7_3:34671083-34671102 None:intergenic 20.0%
!!! AATTGATTCCTTAAAATTCA+AGG - chr7_3:34671159-34671178 None:intergenic 20.0%
!! TGTTTAATCAAGTATGAAAA+CGG - chr7_3:34671484-34671503 None:intergenic 20.0%
!! CAAAGATTTCATCAATAATA+TGG + chr7_3:34671647-34671666 Msa1102180:intron 20.0%
!! CATTACAAATATGGAAAAAA+AGG - chr7_3:34671771-34671790 None:intergenic 20.0%
!!! TTATTTTACTTTCAACAAAG+AGG + chr7_3:34671906-34671925 Msa1102180:CDS 20.0%
!! ATTATAGAGATCATACATTA+AGG - chr7_3:34672256-34672275 None:intergenic 20.0%
!!! TATATCTTAAAATTTGGGTT+AGG - chr7_3:34672385-34672404 None:intergenic 20.0%
!! TTAAGATATATGATGTTGAT+TGG + chr7_3:34672395-34672414 Msa1102180:three_prime_UTR 20.0%
! AAATAATTCCTAACCAAATC+TGG - chr7_3:34669961-34669980 None:intergenic 25.0%
!! GATTTGGTTAGGAATTATTT+AGG + chr7_3:34669961-34669980 Msa1102180:CDS 25.0%
!! ATTTTTATCATAAGAAGGTG+CGG - chr7_3:34670196-34670215 None:intergenic 25.0%
!!! AGCTGATTTTTATCATAAGA+AGG - chr7_3:34670201-34670220 None:intergenic 25.0%
!! TATAATTTTGTTACGAAGAG+AGG + chr7_3:34670324-34670343 Msa1102180:CDS 25.0%
! TTTGACGAATAATTATCAAC+AGG + chr7_3:34670473-34670492 Msa1102180:CDS 25.0%
! GAACAAAAAAAAAAGTTACC+TGG - chr7_3:34670701-34670720 None:intergenic 25.0%
! AATTATGTAACAATAGAGCA+TGG - chr7_3:34670934-34670953 None:intergenic 25.0%
! TTTCATCTATAACTTGAAAC+TGG - chr7_3:34671059-34671078 None:intergenic 25.0%
! CCTTAAAATTCAAGGATTAT+TGG - chr7_3:34671151-34671170 None:intergenic 25.0%
!! CCAATAATCCTTGAATTTTA+AGG + chr7_3:34671148-34671167 Msa1102180:intron 25.0%
! CTATGATTTAAGAACTACAT+GGG + chr7_3:34671315-34671334 Msa1102180:intron 25.0%
! ATATCTTATGCACAGAATAT+CGG + chr7_3:34671346-34671365 Msa1102180:intron 25.0%
! TTTAATCAAGTATGAAAACG+GGG - chr7_3:34671482-34671501 None:intergenic 25.0%
! GTTTAATCAAGTATGAAAAC+GGG - chr7_3:34671483-34671502 None:intergenic 25.0%
! AATAGACTATGAAAAAGCAA+TGG + chr7_3:34671929-34671948 Msa1102180:CDS 25.0%
!!! TCATTATTTTGAATTAGCTC+AGG + chr7_3:34672077-34672096 Msa1102180:three_prime_UTR 25.0%
! ACGATATGTTTATAAGTGAT+AGG + chr7_3:34672316-34672335 Msa1102180:three_prime_UTR 25.0%
TCTTCTAAGCTATTAATCGA+GGG - chr7_3:34669754-34669773 None:intergenic 30.0%
TTCTTCTAAGCTATTAATCG+AGG - chr7_3:34669755-34669774 None:intergenic 30.0%
AAACGATTCTGTTCGTTTAA+CGG - chr7_3:34669820-34669839 None:intergenic 30.0%
TTTCTATTGCAACTACTCAT+AGG + chr7_3:34669875-34669894 Msa1102180:CDS 30.0%
GCGTAATAATTATCATCACT+AGG - chr7_3:34669997-34670016 None:intergenic 30.0%
!! TCGTTTTGTTATATACCGAA+GGG + chr7_3:34670048-34670067 Msa1102180:CDS 30.0%
!!! GTATTTTAGGATTAATGCGT+TGG + chr7_3:34670098-34670117 Msa1102180:CDS 30.0%
TAATTATCAACAGGCTGATA+CGG + chr7_3:34670482-34670501 Msa1102180:CDS 30.0%
AAGGAAAGAATACAAAGAGT+AGG + chr7_3:34670523-34670542 Msa1102180:CDS 30.0%
AAAGAGTAGGATAATATCGA+AGG + chr7_3:34670536-34670555 Msa1102180:CDS 30.0%
AAGAGTAGGATAATATCGAA+GGG + chr7_3:34670537-34670556 Msa1102180:CDS 30.0%
ATTCAAGGAACTGTTATAGA+GGG + chr7_3:34670574-34670593 Msa1102180:CDS 30.0%
AAAAAAGTTACCTGGATGTA+AGG - chr7_3:34670693-34670712 None:intergenic 30.0%
!! CTAAGATTGGTTTCTCTATA+TGG + chr7_3:34670866-34670885 Msa1102180:intron 30.0%
AGAATTAATCCTGATTGTGT+TGG + chr7_3:34671100-34671119 Msa1102180:intron 30.0%
! CTATTTTATCCAACACAATC+AGG - chr7_3:34671112-34671131 None:intergenic 30.0%
GCTATGATTTAAGAACTACA+TGG + chr7_3:34671314-34671333 Msa1102180:intron 30.0%
ACTAGAAATTGTTAGTATCC+TGG + chr7_3:34671418-34671437 Msa1102180:intron 30.0%
ATAAGGAAAAGGAAACAAGA+TGG - chr7_3:34671742-34671761 None:intergenic 30.0%
AAAGGGTGAAAATAAGGAAA+AGG - chr7_3:34671753-34671772 None:intergenic 30.0%
GGAAAAAAAGGGTGAAAATA+AGG - chr7_3:34671759-34671778 None:intergenic 30.0%
! GTTTCTGGACATTACAAATA+TGG - chr7_3:34671780-34671799 None:intergenic 30.0%
!! TGAAATTGCAATTGTTTTGC+AGG + chr7_3:34671821-34671840 Msa1102180:intron 30.0%
! TAACTGATCTTCACCAATTT+TGG - chr7_3:34671889-34671908 None:intergenic 30.0%
AGATGTGTACATGATGTATA+TGG + chr7_3:34672149-34672168 Msa1102180:three_prime_UTR 30.0%
! GTTTGAAACTTGATGTTTCA+TGG - chr7_3:34672234-34672253 None:intergenic 30.0%
TATGTTTATAAGTGATAGGC+AGG + chr7_3:34672320-34672339 Msa1102180:three_prime_UTR 30.0%
!! TTACAAAACCGGCTTTTAAA+GGG - chr7_3:34672349-34672368 None:intergenic 30.0%
TAACTCAAACCTTACAAAAC+CGG - chr7_3:34672360-34672379 None:intergenic 30.0%
TTAATCGAGGGTTTCTTCTT+AGG - chr7_3:34669742-34669761 None:intergenic 35.0%
TTGAGATACTTCGATAAGCT+TGG + chr7_3:34669790-34669809 Msa1102180:CDS 35.0%
TGAGATACTTCGATAAGCTT+GGG + chr7_3:34669791-34669810 Msa1102180:CDS 35.0%
!! TGTTAAGGAGTATCCAGATT+TGG + chr7_3:34669945-34669964 Msa1102180:CDS 35.0%
TTATTACGCTGCATTGAATG+CGG + chr7_3:34670008-34670027 Msa1102180:CDS 35.0%
!! GTCGTTTTGTTATATACCGA+AGG + chr7_3:34670047-34670066 Msa1102180:CDS 35.0%
AAATACGTGGATATCTGCAT+CGG - chr7_3:34670084-34670103 None:intergenic 35.0%
! TGCAGATATCCACGTATTTT+AGG + chr7_3:34670085-34670104 Msa1102180:CDS 35.0%
CGCATTAATCCTAAAATACG+TGG - chr7_3:34670097-34670116 None:intergenic 35.0%
TAAAAATCAGCTTCATGCTG+CGG + chr7_3:34670209-34670228 Msa1102180:CDS 35.0%
!!! GAGTGTTGGAGAGTTTTATT+CGG + chr7_3:34670446-34670465 Msa1102180:CDS 35.0%
AATTATCAACAGGCTGATAC+GGG + chr7_3:34670483-34670502 Msa1102180:CDS 35.0%
GGGACTAAGATGATACATAA+AGG + chr7_3:34670504-34670523 Msa1102180:CDS 35.0%
CATTCAAGGAACTGTTATAG+AGG + chr7_3:34670573-34670592 Msa1102180:CDS 35.0%
GAATACATATCCTTACATCC+AGG + chr7_3:34670680-34670699 Msa1102180:CDS 35.0%
AAGCAAATCCAATAAGACAC+AGG - chr7_3:34670972-34670991 None:intergenic 35.0%
!!! TATTGTTTTGACAACTGTGG+TGG + chr7_3:34671280-34671299 Msa1102180:intron 35.0%
!!! ATTGTTTTGACAACTGTGGT+GGG + chr7_3:34671281-34671300 Msa1102180:intron 35.0%
ACAGAATATCGGTACTTCTT+CGG + chr7_3:34671357-34671376 Msa1102180:intron 35.0%
AAAACGGGGTGATAAAAATC+AGG - chr7_3:34671468-34671487 None:intergenic 35.0%
! GTGTCTTTTATTCTGTTTCC+TGG + chr7_3:34671543-34671562 Msa1102180:intron 35.0%
! TCTTTTATTCTGTTTCCTGG+TGG + chr7_3:34671546-34671565 Msa1102180:intron 35.0%
! ACCAAATGTTGGGATAGTTT+TGG - chr7_3:34671572-34671591 None:intergenic 35.0%
GGTATCAAAGACCAAATGTT+GGG - chr7_3:34671582-34671601 None:intergenic 35.0%
AGGTATCAAAGACCAAATGT+TGG - chr7_3:34671583-34671602 None:intergenic 35.0%
! ACATTTGGTCTTTGATACCT+CGG + chr7_3:34671583-34671602 Msa1102180:intron 35.0%
AGTGGAAGATAACTCTGATA+TGG - chr7_3:34671715-34671734 None:intergenic 35.0%
TTTCATGAGTACAAGTCTCA+TGG - chr7_3:34671806-34671825 None:intergenic 35.0%
TCCAGAATTTCAAGAACCAA+TGG - chr7_3:34672103-34672122 None:intergenic 35.0%
GATGTTTCATGGATTCTATG+CGG - chr7_3:34672223-34672242 None:intergenic 35.0%
!! CTTACAAAACCGGCTTTTAA+AGG - chr7_3:34672350-34672369 None:intergenic 35.0%
!! CTTTAAAAGCCGGTTTTGTA+AGG + chr7_3:34672348-34672367 Msa1102180:three_prime_UTR 35.0%
! TCGAAGTATCTCAAAAGCTC+AGG - chr7_3:34669784-34669803 None:intergenic 40.0%
GAGATACTTCGATAAGCTTG+GGG + chr7_3:34669792-34669811 Msa1102180:CDS 40.0%
TCATAGGAAGACACTTGAGA+AGG + chr7_3:34669891-34669910 Msa1102180:CDS 40.0%
TTCGATTTCGGATGCTGTTA+AGG + chr7_3:34669930-34669949 Msa1102180:CDS 40.0%
!! AGGAGTATCCAGATTTGGTT+AGG + chr7_3:34669950-34669969 Msa1102180:CDS 40.0%
!!! AATGCGGCTGTTTTTAGTGA+CGG + chr7_3:34670024-34670043 Msa1102180:CDS 40.0%
TAGGATTAATGCGTTGGAGA+CGG + chr7_3:34670104-34670123 Msa1102180:CDS 40.0%
! ATTTGAGAGGACGTTGATTG+TGG + chr7_3:34670131-34670150 Msa1102180:CDS 40.0%
! TAGGAGTATGGTGGAGTATT+TGG + chr7_3:34670161-34670180 Msa1102180:CDS 40.0%
! AGTATGGTGGAGTATTTGGA+AGG + chr7_3:34670165-34670184 Msa1102180:CDS 40.0%
! GTATGGTGGAGTATTTGGAA+GGG + chr7_3:34670166-34670185 Msa1102180:CDS 40.0%
! CGGTTGTTGAGTTGTATTGT+GGG + chr7_3:34670229-34670248 Msa1102180:CDS 40.0%
! GGTTGTTGAGTTGTATTGTG+GGG + chr7_3:34670230-34670249 Msa1102180:CDS 40.0%
AGTATTCGACTGTGCAGAAT+TGG + chr7_3:34670268-34670287 Msa1102180:CDS 40.0%
GTAAGAAGTCGAAGATATCG+TGG + chr7_3:34670358-34670377 Msa1102180:CDS 40.0%
ATTATCAACAGGCTGATACG+GGG + chr7_3:34670484-34670503 Msa1102180:CDS 40.0%
!! ATATCGAAGGGTATTTCTGC+TGG + chr7_3:34670549-34670568 Msa1102180:CDS 40.0%
! GTATTTCTGCTGGACATTCA+AGG + chr7_3:34670559-34670578 Msa1102180:CDS 40.0%
CAGTGTGATTCCATGCTTAT+TGG + chr7_3:34670642-34670661 Msa1102180:CDS 40.0%
AGCACTATCACCAATAAGCA+TGG - chr7_3:34670655-34670674 None:intergenic 40.0%
CCATGAAGTATGCATGAACA+CGG - chr7_3:34670828-34670847 None:intergenic 40.0%
TGCATACTTCATGGACACTT+TGG + chr7_3:34670834-34670853 Msa1102180:intron 40.0%
TCCTCTTACCTGTGTCTTAT+TGG + chr7_3:34670961-34670980 Msa1102180:intron 40.0%
TCCAATAAGACACAGGTAAG+AGG - chr7_3:34670965-34670984 None:intergenic 40.0%
ATCCGTGGTGTTTAGTTGAA+AGG + chr7_3:34670999-34671018 Msa1102180:intron 40.0%
TCCGTGGTGTTTAGTTGAAA+GGG + chr7_3:34671000-34671019 Msa1102180:intron 40.0%
!!! GGCTATTGTTTTGACAACTG+TGG + chr7_3:34671277-34671296 Msa1102180:intron 40.0%
!! AACTGTGGTGGGCAAATATA+CGG + chr7_3:34671292-34671311 Msa1102180:intron 40.0%
! GAGCTTTTTGATGCTGAGTT+TGG + chr7_3:34671440-34671459 Msa1102180:intron 40.0%
GCCAAAACTATCCCAACATT+TGG + chr7_3:34671568-34671587 Msa1102180:intron 40.0%
TGGTTGCAGTCTATTGTTGT+TGG + chr7_3:34671615-34671634 Msa1102180:intron 40.0%
AGGAAACAAGATGGAAGTAG+TGG - chr7_3:34671733-34671752 None:intergenic 40.0%
GAAGCTCATTGAAGACATCA+CGG - chr7_3:34671977-34671996 None:intergenic 40.0%
AATGAGCTTCCCGATGAATT+TGG + chr7_3:34671987-34672006 Msa1102180:CDS 40.0%
TTTGAATTAGCTCAGGCCAT+TGG + chr7_3:34672084-34672103 Msa1102180:three_prime_UTR 40.0%
!! GCCATTGGTTCTTGAAATTC+TGG + chr7_3:34672099-34672118 Msa1102180:three_prime_UTR 40.0%
! GAAATTCTGGAAGTTCTCAG+AGG + chr7_3:34672112-34672131 Msa1102180:three_prime_UTR 40.0%
!!! ATGCGGCTGTTTTTAGTGAC+GGG + chr7_3:34670025-34670044 Msa1102180:CDS 45.0%
ATCGGACACTTAACACCCTT+CGG - chr7_3:34670066-34670085 None:intergenic 45.0%
AGGATTAATGCGTTGGAGAC+GGG + chr7_3:34670105-34670124 Msa1102180:CDS 45.0%
! GCGGTTGTTGAGTTGTATTG+TGG + chr7_3:34670228-34670247 Msa1102180:CDS 45.0%
! TGTTGAGTTGTATTGTGGGG+AGG + chr7_3:34670233-34670252 Msa1102180:CDS 45.0%
! GTTGAGTTGTATTGTGGGGA+GGG + chr7_3:34670234-34670253 Msa1102180:CDS 45.0%
GACTGTGCAGAATTGGTATG+CGG + chr7_3:34670275-34670294 Msa1102180:CDS 45.0%
ACTGTGCAGAATTGGTATGC+GGG + chr7_3:34670276-34670295 Msa1102180:CDS 45.0%
GTGATGAGAATGGGAAAGGT+GGG + chr7_3:34670298-34670317 Msa1102180:CDS 45.0%
CGGATACTTCCAAGTAATCG+CGG - chr7_3:34670403-34670422 None:intergenic 45.0%
!! GAAGTATCCGAGCGTTGTTT+TGG + chr7_3:34670413-34670432 Msa1102180:CDS 45.0%
!!! TATCCGAGCGTTGTTTTGGA+GGG + chr7_3:34670417-34670436 Msa1102180:CDS 45.0%
! CTGTTATAGAGGGCTTGTTC+AGG + chr7_3:34670584-34670603 Msa1102180:CDS 45.0%
! GCTTGTTCAGGTTCAGTCTA+AGG + chr7_3:34670596-34670615 Msa1102180:CDS 45.0%
! TGTTCAGGTTCAGTCTAAGG+CGG + chr7_3:34670599-34670618 Msa1102180:CDS 45.0%
CCGTGTTCATGCATACTTCA+TGG + chr7_3:34670825-34670844 Msa1102180:intron 45.0%
ATTTGCTTGTCCTGTATCCG+TGG + chr7_3:34670984-34671003 Msa1102180:intron 45.0%
CAACTAAACACCACGGATAC+AGG - chr7_3:34670997-34671016 None:intergenic 45.0%
CCCCTTTCAACTAAACACCA+CGG - chr7_3:34671004-34671023 None:intergenic 45.0%
CCGTGGTGTTTAGTTGAAAG+GGG + chr7_3:34671001-34671020 Msa1102180:intron 45.0%
TGCCTAGTACAAGCACAACA+TGG + chr7_3:34671245-34671264 Msa1102180:intron 45.0%
CACCATGTTGTGCTTGTACT+AGG - chr7_3:34671250-34671269 None:intergenic 45.0%
AGCACAACATGGTGAGAGAT+TGG + chr7_3:34671256-34671275 Msa1102180:intron 45.0%
GTACTTCTTCGGCATACATG+TGG + chr7_3:34671368-34671387 Msa1102180:intron 45.0%
! CATACATGTGGTCTAGTTCG+AGG + chr7_3:34671380-34671399 Msa1102180:intron 45.0%
ACTCAGCATCAAAAAGCTCC+AGG - chr7_3:34671439-34671458 None:intergenic 45.0%
CAAGTCTCATGGCAAGTTTC+TGG - chr7_3:34671795-34671814 None:intergenic 45.0%
TCGTGCTCAATTCTTGCTGA+TGG - chr7_3:34671855-34671874 None:intergenic 45.0%
ATCAGCAAGAATTGAGCACG+AGG + chr7_3:34671854-34671873 Msa1102180:CDS 45.0%
GAGGCTAGTACGTCCAAAAT+TGG + chr7_3:34671873-34671892 Msa1102180:CDS 45.0%
CAAGCTTCAAGCTCATGAGT+TGG - chr7_3:34672025-34672044 None:intergenic 45.0%
ACTCATGAGCTTGAAGCTTG+AGG + chr7_3:34672025-34672044 Msa1102180:CDS 45.0%
CTCATGAGCTTGAAGCTTGA+GGG + chr7_3:34672026-34672045 Msa1102180:CDS 45.0%
TCATGAGCTTGAAGCTTGAG+GGG + chr7_3:34672027-34672046 Msa1102180:CDS 45.0%
TTCATGGATTCTATGCGGCA+TGG - chr7_3:34672218-34672237 None:intergenic 45.0%
!! CAAAACCGGCTTTTAAAGGG+TGG - chr7_3:34672346-34672365 None:intergenic 45.0%
AGGAAGACACTTGAGAAGGC+TGG + chr7_3:34669895-34669914 Msa1102180:CDS 50.0%
GGATTAATGCGTTGGAGACG+GGG + chr7_3:34670106-34670125 Msa1102180:CDS 50.0%
! TGAGAGGACGTTGATTGTGG+CGG + chr7_3:34670134-34670153 Msa1102180:CDS 50.0%
!! CGTTGATTGTGGCGGATGAT+AGG + chr7_3:34670142-34670161 Msa1102180:CDS 50.0%
!! TGTGGCGGATGATAGGAGTA+TGG + chr7_3:34670149-34670168 Msa1102180:CDS 50.0%
TGGTATGCGGGTGATGAGAA+TGG + chr7_3:34670288-34670307 Msa1102180:CDS 50.0%
GGTATGCGGGTGATGAGAAT+GGG + chr7_3:34670289-34670308 Msa1102180:CDS 50.0%
GGTGATGAGAATGGGAAAGG+TGG + chr7_3:34670297-34670316 Msa1102180:CDS 50.0%
ACGAAGAGAGGATTGTGTGC+TGG + chr7_3:34670336-34670355 Msa1102180:CDS 50.0%
GTCGAAGATATCGTGGACTC+AGG + chr7_3:34670365-34670384 Msa1102180:CDS 50.0%
GAAGATATCGTGGACTCAGG+TGG + chr7_3:34670368-34670387 Msa1102180:CDS 50.0%
!!! GTATCCGAGCGTTGTTTTGG+AGG + chr7_3:34670416-34670435 Msa1102180:CDS 50.0%
TCACCCTCCAAAACAACGCT+CGG - chr7_3:34670423-34670442 None:intergenic 50.0%
! TTGGAGGGTGATGAGAGTGT+TGG + chr7_3:34670432-34670451 Msa1102180:CDS 50.0%
!!! TTGGGATAGTTTTGGCCACC+AGG - chr7_3:34671564-34671583 None:intergenic 50.0%
TGATACCTCGGTAGCTTCAC+TGG + chr7_3:34671595-34671614 Msa1102180:intron 50.0%
GCAATGGCTGCTATGATCTC+TGG + chr7_3:34671945-34671964 Msa1102180:CDS 50.0%
ACCTCGGAGCCAAATTCATC+GGG - chr7_3:34671999-34672018 None:intergenic 50.0%
CACCTCGGAGCCAAATTCAT+CGG - chr7_3:34672000-34672019 None:intergenic 50.0%
!! GCTCATGAGTTGGTTCACCT+CGG - chr7_3:34672015-34672034 None:intergenic 50.0%
TTGAAGCTTGAGGGGTCAGT+CGG + chr7_3:34672035-34672054 Msa1102180:CDS 50.0%
TGGAGACGGGGCAATTTGAG+AGG + chr7_3:34670118-34670137 Msa1102180:CDS 55.0%
! GGCGGATGATAGGAGTATGG+TGG + chr7_3:34670152-34670171 Msa1102180:CDS 55.0%
GCGGGTGATGAGAATGGGAA+AGG + chr7_3:34670294-34670313 Msa1102180:CDS 55.0%
AGACTGGGTCCGCGATTACT+TGG + chr7_3:34670391-34670410 Msa1102180:CDS 55.0%
TGCAACCAGTGAAGCTACCG+AGG - chr7_3:34671603-34671622 None:intergenic 55.0%
! TCCCGATGAATTTGGCTCCG+AGG + chr7_3:34671995-34672014 Msa1102180:CDS 55.0%
GTTCTCAGAGGCAGTGTGTC+TGG + chr7_3:34672124-34672143 Msa1102180:three_prime_UTR 55.0%
! GCAGGCCACCCTTTAAAAGC+CGG + chr7_3:34672338-34672357 Msa1102180:three_prime_UTR 55.0%
TCGTGGACTCAGGTGGAGAC+TGG + chr7_3:34670375-34670394 Msa1102180:CDS 60.0%
CGTGGACTCAGGTGGAGACT+GGG + chr7_3:34670376-34670395 Msa1102180:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 34669697 34672432 34669697 ID=Msa1102180;Name=Msa1102180
chr7_3 mRNA 34669697 34672432 34669697 ID=Msa1102180-mRNA-1;Parent=Msa1102180;Name=Msa1102180-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|1|1|2|371|407
chr7_3 exon 34669697 34670701 34669697 ID=Msa1102180-mRNA-1:exon:7293;Parent=Msa1102180-mRNA-1
chr7_3 exon 34671843 34672432 34671843 ID=Msa1102180-mRNA-1:exon:7294;Parent=Msa1102180-mRNA-1
chr7_3 CDS 34669697 34670701 34669697 ID=Msa1102180-mRNA-1:cds;Parent=Msa1102180-mRNA-1
chr7_3 CDS 34671843 34672061 34671843 ID=Msa1102180-mRNA-1:cds;Parent=Msa1102180-mRNA-1
chr7_3 three_prime_UTR 34672062 34672432 34672062 ID=Msa1102180-mRNA-1:three_prime_utr;Parent=Msa1102180-mRNA-1
Gene Sequence

>Msa1102180

TACCCAACTATAGATTTTCAAGATATATGCTATTATTCAGCTCCTAAGAAGAAACCCTCGATTAATAGCTTAGAAGAAGCTGATCCTGAGCTTTTGAGATACTTCGATAAGCTTGGGGTTCCGTTAAACGAACAGAATCGTTTAGCGAATGTTGCAGTAGATGCTGTTTTAGACAGTGTTTCTATTGCAACTACTCATAGGAAGACACTTGAGAAGGCTGGTGTTATATTTTGTTCGATTTCGGATGCTGTTAAGGAGTATCCAGATTTGGTTAGGAATTATTTAGGGAAAGTTGTTCCTAGTGATGATAATTATTACGCTGCATTGAATGCGGCTGTTTTTAGTGACGGGTCGTTTTGTTATATACCGAAGGGTGTTAAGTGTCCGATGCAGATATCCACGTATTTTAGGATTAATGCGTTGGAGACGGGGCAATTTGAGAGGACGTTGATTGTGGCGGATGATAGGAGTATGGTGGAGTATTTGGAAGGGTGTACCGCACCTTCTTATGATAAAAATCAGCTTCATGCTGCGGTTGTTGAGTTGTATTGTGGGGAGGGTGCAGAGATTAAGTATTCGACTGTGCAGAATTGGTATGCGGGTGATGAGAATGGGAAAGGTGGGATTTATAATTTTGTTACGAAGAGAGGATTGTGTGCTGGTAAGAAGTCGAAGATATCGTGGACTCAGGTGGAGACTGGGTCCGCGATTACTTGGAAGTATCCGAGCGTTGTTTTGGAGGGTGATGAGAGTGTTGGAGAGTTTTATTCGGTTGCTTTGACGAATAATTATCAACAGGCTGATACGGGGACTAAGATGATACATAAAGGAAAGAATACAAAGAGTAGGATAATATCGAAGGGTATTTCTGCTGGACATTCAAGGAACTGTTATAGAGGGCTTGTTCAGGTTCAGTCTAAGGCGGAGAATGCGAAAAACTCTTCTCAGTGTGATTCCATGCTTATTGGTGATAGTGCTGCTGCGAATACATATCCTTACATCCAGGTGAAGAATCCATCAGCAAGAATTGAGCACGAGGCTAGTACGTCCAAAATTGGTGAAGATCAGTTATTTTACTTTCAACAAAGAGGAATAGACTATGAAAAAGCAATGGCTGCTATGATCTCTGGATTTTGCCGTGATGTCTTCAATGAGCTTCCCGATGAATTTGGCTCCGAGGTGAACCAACTCATGAGCTTGAAGCTTGAGGGGTCAGTCGGATAA

Protein sequence

>Msa1102180

YPTIDFQDICYYSAPKKKPSINSLEEADPELLRYFDKLGVPLNEQNRLANVAVDAVLDSVSIATTHRKTLEKAGVIFCSISDAVKEYPDLVRNYLGKVVPSDDNYYAALNAAVFSDGSFCYIPKGVKCPMQISTYFRINALETGQFERTLIVADDRSMVEYLEGCTAPSYDKNQLHAAVVELYCGEGAEIKYSTVQNWYAGDENGKGGIYNFVTKRGLCAGKKSKISWTQVETGSAITWKYPSVVLEGDESVGEFYSVALTNNYQQADTGTKMIHKGKNTKSRIISKGISAGHSRNCYRGLVQVQSKAENAKNSSQCDSMLIGDSAAANTYPYIQVKNPSARIEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGSEVNQLMSLKLEGSVG*