AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0835730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0835730 MtrunA17_Chr5g0401611 98.833 514 6 0 1 514 1 514 0.0 1024
Msa0835730 MtrunA17_Chr4g0053701 84.708 497 70 1 18 514 25 515 0.0 847
Msa0835730 MtrunA17_Chr3g0134491 77.282 471 101 1 24 494 44 508 0.0 752
Msa0835730 MtrunA17_Chr8g0347551 67.223 479 153 1 16 494 51 525 0.0 679
Msa0835730 MtrunA17_Chr3g0124991 43.077 455 235 8 52 490 34 480 1.49e-107 330
Msa0835730 MtrunA17_Chr2g0333811 41.667 456 244 8 51 491 44 492 4.91e-106 327
Msa0835730 MtrunA17_Chr3g0124971 40.162 493 268 9 16 490 4 487 2.52e-100 312
Msa0835730 MtrunA17_Chr4g0012701 78.481 79 16 1 1 79 1 78 1.47e-29 110
Msa0835730 MtrunA17_Chr7g0264231 26.824 425 257 14 61 466 38 427 1.51e-26 114
Msa0835730 MtrunA17_Chr2g0309271 26.836 354 237 9 97 444 3 340 4.50e-26 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0835730 AT2G23150.1 81.933 476 85 1 25 500 27 501 0.0 805
Msa0835730 AT5G67330.1 76.087 506 115 2 2 507 5 504 0.0 778
Msa0835730 AT1G47240.1 78.243 478 100 1 17 494 34 507 0.0 777
Msa0835730 AT4G18790.1 67.775 481 148 1 11 491 33 506 0.0 665
Msa0835730 AT1G15960.1 42.619 420 227 7 51 463 34 446 8.36e-105 324
Msa0835730 AT1G80830.1 42.619 420 227 7 51 463 42 454 1.94e-101 315
Msa0835730 AT1G80830.2 42.619 420 227 7 51 463 42 454 1.94e-101 315
Msa0835730 AT5G03280.1 25.389 386 265 9 61 439 24 393 3.51e-29 122

Find 152 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTAACATCATAGACTTAA+AGG 0.227497 5_4:-9092029 None:intergenic
TATTCCCAATCCTGTATATA+TGG 0.228743 5_4:+9090355 Msa0835730:CDS
CTCTCATTTGCATGGATGTT+TGG 0.230544 5_4:+9089849 Msa0835730:CDS
TTCCTCTTTCTTGAGAATTA+TGG 0.232223 5_4:+9089777 Msa0835730:CDS
CTAATAACTTGCAACGATTC+AGG 0.238973 5_4:+9091880 Msa0835730:three_prime_UTR
GTAATGGCCTTGTTCCTCTT+TGG 0.242402 5_4:+9088585 Msa0835730:CDS
CTTGGGCAAGGATTGTTCTT+TGG 0.245807 5_4:+9088486 Msa0835730:CDS
TGCCGTTCTTATTGCTATAA+TGG 0.260123 5_4:+9089824 Msa0835730:CDS
AGTGGTGGTACCTTATTTAT+TGG 0.283497 5_4:+9091906 Msa0835730:three_prime_UTR
GGTTTCAAAGGAACAAATAA+TGG 0.283702 5_4:+9090638 Msa0835730:CDS
TATACATGCATTATATTTGT+AGG 0.299436 5_4:-9092101 None:intergenic
TAATGGCCTTGTTCCTCTTT+GGG 0.305235 5_4:+9088586 Msa0835730:CDS
GCCCTGGTGATAGTGATAAA+TGG 0.312921 5_4:+9091526 Msa0835730:CDS
CGCTGTTATGGCTTCTTATG+TGG 0.313493 5_4:+9088366 Msa0835730:CDS
TCTGATATTCAAGAGGTTAT+AGG 0.318147 5_4:+9088536 Msa0835730:CDS
CTGATATTCAAGAGGTTATA+GGG 0.327415 5_4:+9088537 Msa0835730:CDS
TAGGGAGTGCTATTGCTATT+AGG 0.333861 5_4:+9088555 Msa0835730:CDS
AGATCTCCTTCCAAGTTTCC+AGG 0.335579 5_4:-9088317 None:intergenic
TTCCTGGCTTGTGGCTGCCC+TGG 0.337975 5_4:+9091510 Msa0835730:CDS
AAGCGTGTTTAATTTGATAT+TGG 0.345752 5_4:-9092157 None:intergenic
CTTCAATCTGGTGCAATTGC+TGG 0.345914 5_4:+9088338 Msa0835730:CDS
TTGCTGGGTATTCGCTGTTA+TGG 0.347044 5_4:+9088354 Msa0835730:CDS
ATTGATTCCCTTGCTTTGTT+TGG 0.349044 5_4:+9090617 Msa0835730:CDS
GAATTATGGTGTGAGGAAAT+TGG 0.350066 5_4:+9089791 Msa0835730:CDS
GACAAATATATTAATAATAA+AGG 0.352339 5_4:-9090232 None:intergenic
TCCTGTATATATGGGGTATT+GGG 0.357893 5_4:+9090364 Msa0835730:CDS
GTACAGACAACCAATAAATA+AGG 0.360066 5_4:-9091916 None:intergenic
AACAGCTTGTTGTATAGTTC+TGG 0.368091 5_4:-9090061 None:intergenic
GTTTCAAAGGAACAAATAAT+GGG 0.368092 5_4:+9090639 Msa0835730:CDS
TCTGAAAAGGTTGTCGTTGT+TGG 0.368268 5_4:+9088170 Msa0835730:CDS
ACGTAACGGAGCTTGAAATA+AGG 0.375796 5_4:-9091648 None:intergenic
TAGCGCAATGGTGGACTCTA+TGG 0.377756 5_4:-9090202 None:intergenic
CAGTACCTTCAGGAGAAGTA+TGG 0.378008 5_4:+9090324 Msa0835730:CDS
ATCCTGTATATATGGGGTAT+TGG 0.391603 5_4:+9090363 Msa0835730:CDS
CTTGCTTTGTTTGGTTTCAA+AGG 0.392387 5_4:+9090626 Msa0835730:CDS
CTTATGTGGGCTACAGCTAT+GGG 0.394453 5_4:+9088380 Msa0835730:CDS
ACAAATAATAAGCATTAGTA+TGG 0.398746 5_4:-9091853 None:intergenic
TGTTGCTACGGGGAGACATT+TGG 0.399325 5_4:+9088436 Msa0835730:CDS
ATGACTGAAGTTGCTTTGAT+TGG 0.400536 5_4:+9088512 Msa0835730:CDS
GCAGTAACATACCAAGTTAC+TGG 0.403560 5_4:-9091965 None:intergenic
CGCTTACGATTCATCTGAAA+AGG 0.410529 5_4:+9088157 Msa0835730:CDS
TTTCAATACAGACCATTTCC+TGG 0.412146 5_4:+9091494 Msa0835730:intron
TCTTATGTGGGCTACAGCTA+TGG 0.412271 5_4:+9088379 Msa0835730:CDS
TTAGTATGGTCAATAAGAAT+AGG 0.413825 5_4:-9091839 None:intergenic
CAACAAGCTGTTGGAGTTGT+TGG 0.415507 5_4:+9090072 Msa0835730:CDS
GGCCTTGTTCCTCTTTGGGC+TGG 0.416642 5_4:+9088590 Msa0835730:CDS
ATGGTACTGAAATAGCAAAT+AGG 0.419910 5_4:+9090280 Msa0835730:CDS
ATAATGGGCACTTTCAAGAT+TGG 0.421189 5_4:+9090654 Msa0835730:CDS
AGCAAGGGAATCAATGCAAA+AGG 0.422846 5_4:-9090609 None:intergenic
ATTCCCAATCCTGTATATAT+GGG 0.424368 5_4:+9090356 Msa0835730:CDS
ATAGTTCTGGAGCTAAGTTT+AGG 0.430966 5_4:-9090048 None:intergenic
CTTAACATCATAGACTTAAA+GGG 0.432390 5_4:-9092028 None:intergenic
TAATAACTTGCAACGATTCA+GGG 0.435220 5_4:+9091881 Msa0835730:three_prime_UTR
GATGGTGTTGATGTTCTTGT+TGG 0.436854 5_4:+9089885 Msa0835730:CDS
GGCAGCCACAAGCCAGGAAA+TGG 0.439428 5_4:-9091506 None:intergenic
TTCGTAGGCTTCTTCTTCGT+CGG 0.440294 5_4:-9088195 None:intergenic
TGCTCTTGTTCAATCCAGGC+AGG 0.441118 5_4:+9090131 Msa0835730:CDS
TACCCCATATATACAGGATT+GGG 0.442489 5_4:-9090359 None:intergenic
AAATGCAGGGCAGTACCTTC+AGG 0.445908 5_4:+9090314 Msa0835730:CDS
CATAGTTTCTTCCATGAAAA+CGG 0.452161 5_4:-9088248 None:intergenic
TTGTCATTACTGCTTTAGAT+TGG 0.452490 5_4:+9088615 Msa0835730:CDS
CAGTGTAGATGCCAGTAACT+TGG 0.453546 5_4:+9091954 Msa0835730:three_prime_UTR
GGTCAGAGTAGCACTATTAC+TGG 0.465242 5_4:+9090399 Msa0835730:CDS
GCAAGGTTAGGTGTTGCTAC+GGG 0.467938 5_4:+9088425 Msa0835730:CDS
TAGTATGGTCAATAAGAATA+GGG 0.470343 5_4:-9091838 None:intergenic
GGATGAGGGCGTTGATTACT+CGG 0.472145 5_4:+9090478 Msa0835730:CDS
TATTGGACGTGAAAAGAAAC+AGG 0.472918 5_4:-9092140 None:intergenic
GCTGTTATGGCTTCTTATGT+GGG 0.476897 5_4:+9088367 Msa0835730:CDS
CACCATAATTCTCAAGAAAG+AGG 0.481932 5_4:-9089779 None:intergenic
ATTCTGCTCTTGTTCAATCC+AGG 0.482576 5_4:+9090127 Msa0835730:CDS
GTTGTTCTAACAGAGGTTGT+TGG 0.484418 5_4:-9088112 None:intergenic
CTATGGTTATTCAGTGGACC+AGG 0.490109 5_4:+9088266 Msa0835730:CDS
TGTCACAACTGTGTTTGCTA+AGG 0.491481 5_4:+9090251 Msa0835730:CDS
ACCCAATACCCCATATATAC+AGG 0.494023 5_4:-9090365 None:intergenic
TACGAAGCTGACGTGGACTC+TGG 0.498286 5_4:+9088212 Msa0835730:CDS
ACAAGAACATCAACACCATC+TGG 0.500462 5_4:-9089882 None:intergenic
GTCACAACTGTGTTTGCTAA+GGG 0.500490 5_4:+9090252 Msa0835730:CDS
TTGGAAGGAGATCTTCAATC+TGG 0.500957 5_4:+9088326 Msa0835730:CDS
AGCAAGGTTAGGTGTTGCTA+CGG 0.506542 5_4:+9088424 Msa0835730:CDS
ATTCCTCAAAATCATGAAGT+AGG 0.509274 5_4:+9091775 Msa0835730:three_prime_UTR
TTCAATCTGGTGCAATTGCT+GGG 0.512314 5_4:+9088339 Msa0835730:CDS
ATACCCCATATATACAGGAT+TGG 0.515369 5_4:-9090360 None:intergenic
TTGGATCCTGGAAACTTGGA+AGG 0.517550 5_4:+9088311 Msa0835730:CDS
AGGATCGGTCTTGTAAATGC+AGG 0.518450 5_4:+9090300 Msa0835730:CDS
ACTATTACTGGTACATATGC+TGG 0.527712 5_4:+9090411 Msa0835730:CDS
AGGACATGCTCTGCTGCTAA+AGG 0.530592 5_4:+9091795 Msa0835730:three_prime_UTR
GTAGAGATGAGTATCCTACT+TGG 0.535483 5_4:+9088468 Msa0835730:CDS
CAAGATTGGCTCTGTCCTCA+AGG 0.536538 5_4:+9090668 Msa0835730:CDS
ATAAGTGCAACTATCATAGT+CGG 0.536590 5_4:-9090516 None:intergenic
AGAGTCCACGTCAGCTTCGT+AGG 0.542462 5_4:-9088210 None:intergenic
TTAGAACAACAAGAAGAAGA+AGG 0.545249 5_4:+9088125 Msa0835730:CDS
TAATGGCTCTCTCATTTGCA+TGG 0.545987 5_4:+9089841 Msa0835730:CDS
TTGCAACGATTCAGGGGAAG+TGG 0.548516 5_4:+9091888 Msa0835730:three_prime_UTR
TAAGTGCAACTATCATAGTC+GGG 0.551179 5_4:-9090515 None:intergenic
GATCGAGTTAATCTTTGCCA+AGG 0.551708 5_4:-9091676 None:intergenic
ACAGACCATTTCCTGGCTTG+TGG 0.551762 5_4:+9091501 Msa0835730:intron
GCTATACTCATCAGAAAACC+TGG 0.552760 5_4:-9088284 None:intergenic
TCTTCTTGTTGTTCTAACAG+AGG 0.555158 5_4:-9088119 None:intergenic
AAAACTATAAATTATTCTTG+TGG 0.556557 5_4:-9087895 None:intergenic
CTTTGAAACCAAACAAAGCA+AGG 0.557493 5_4:-9090625 None:intergenic
GTGGGTAATGATTCGCGTTG+CGG 0.557738 5_4:-9088078 None:intergenic
GGTATTGGGTTACTAGCAGC+TGG 0.560371 5_4:+9090378 Msa0835730:CDS
CACCAGGGCAGCCACAAGCC+AGG 0.561920 5_4:-9091512 None:intergenic
AGAACTATACAACAAGCTGT+TGG 0.566192 5_4:+9090063 Msa0835730:CDS
CACTGCTCCACTCACTTCAG+AGG 0.566376 5_4:-9091572 None:intergenic
GCAAGGGAATCAATGCAAAA+GGG 0.569154 5_4:-9090608 None:intergenic
TTCTTGAGAATTATGGTGTG+AGG 0.571214 5_4:+9089784 Msa0835730:CDS
TAGAGATGAGTATCCTACTT+GGG 0.572208 5_4:+9088469 Msa0835730:CDS
CTGTAAAATTTGATATACAA+TGG 0.572483 5_4:+9091992 Msa0835730:three_prime_UTR
AGAACAATCCTTGCCCAAGT+AGG 0.575207 5_4:-9088482 None:intergenic
AGCCATTTATCACTATCACC+AGG 0.586671 5_4:-9091528 None:intergenic
TTTGAAACCAAACAAAGCAA+GGG 0.595987 5_4:-9090624 None:intergenic
GGAGACAACTAGCGCAATGG+TGG 0.598232 5_4:-9090211 None:intergenic
CGCCTCCATACTTCTCCTGA+AGG 0.601191 5_4:-9090329 None:intergenic
CACCAGCCCAAAGAGGAACA+AGG 0.602260 5_4:-9088592 None:intergenic
ACTTATATTTGATTCTTCAG+AGG 0.602962 5_4:+9090533 Msa0835730:CDS
ATGAGTATCCTACTTGGGCA+AGG 0.603524 5_4:+9088474 Msa0835730:CDS
ATATGCTGGACAATTCATCA+TGG 0.605595 5_4:+9090425 Msa0835730:CDS
GAACTAGTCACTGTCGAGTG+TGG 0.612021 5_4:-9088016 None:intergenic
GATTGGTTCTGATATTCAAG+AGG 0.612261 5_4:+9088529 Msa0835730:CDS
TTATGTGGGCTACAGCTATG+GGG 0.620688 5_4:+9088381 Msa0835730:CDS
CAGAGGTTGTTGGTGAGACA+TGG 0.620954 5_4:-9088102 None:intergenic
AGAAGCCTACGAAGCTGACG+TGG 0.623584 5_4:+9088205 Msa0835730:CDS
GGATCGGTCTTGTAAATGCA+GGG 0.624462 5_4:+9090301 Msa0835730:CDS
AGCCATTATAGCAATAAGAA+CGG 0.624673 5_4:-9089826 None:intergenic
CTTCAGGAGAAGTATGGAGG+CGG 0.626449 5_4:+9090330 Msa0835730:CDS
GCTGGACAATTCATCATGGG+TGG 0.626939 5_4:+9090429 Msa0835730:CDS
TATGCTGGACAATTCATCAT+GGG 0.627133 5_4:+9090426 Msa0835730:CDS
AATAACTTGCAACGATTCAG+GGG 0.627299 5_4:+9091882 Msa0835730:three_prime_UTR
ATGACAACACCAGCCCAAAG+AGG 0.629953 5_4:-9088599 None:intergenic
AATTGAGAGCTTCTTGAACG+CGG 0.634426 5_4:-9090173 None:intergenic
ACTGAAATAGCAAATAGGAT+CGG 0.636009 5_4:+9090285 Msa0835730:CDS
AAAGGAGACAACTAGCGCAA+TGG 0.641305 5_4:-9090214 None:intergenic
AAGAAACTATGGTTATTCAG+TGG 0.641832 5_4:+9088260 Msa0835730:CDS
CAACGATTCAGGGGAAGTGG+TGG 0.642369 5_4:+9091891 Msa0835730:three_prime_UTR
TTCCCAATCCTGTATATATG+GGG 0.642639 5_4:+9090357 Msa0835730:CDS
GTTGTTGGTGAGACATGGTG+TGG 0.644126 5_4:-9088097 None:intergenic
TACCTTCAGGAGAAGTATGG+AGG 0.648168 5_4:+9090327 Msa0835730:CDS
AGTTTCTTCCATGAAAACGG+TGG 0.652794 5_4:-9088245 None:intergenic
ATTTGTAGGTTCTATCCCTG+AGG 0.654158 5_4:-9092087 None:intergenic
TTGCCAAGGTGAAAACGTAA+CGG 0.654921 5_4:-9091662 None:intergenic
GAATGCAAGAATACATTGTG+AGG 0.660682 5_4:-9090108 None:intergenic
CAAGGTTAGGTGTTGCTACG+GGG 0.666495 5_4:+9088426 Msa0835730:CDS
TTGTTGGTGAGACATGGTGT+GGG 0.666596 5_4:-9088096 None:intergenic
GTTGACTGCTGAACTTTGCG+TGG 0.669251 5_4:-9091749 None:intergenic
TTTGGTGAAGCAAAGCCAGA+TGG 0.673749 5_4:+9089867 Msa0835730:CDS
GGCTGCTCAACTCTCCGTGG+TGG 0.674172 5_4:-9091710 None:intergenic
GCCATTTATCACTATCACCA+GGG 0.692397 5_4:-9091527 None:intergenic
CGTGGTAGCTACTATCTCTG+TGG 0.702912 5_4:-9091731 None:intergenic
TGTGGCTGCTCAACTCTCCG+TGG 0.704473 5_4:-9091713 None:intergenic
ATCAAAGACAGTTACCACCA+CGG 0.705378 5_4:+9091696 Msa0835730:CDS
TGTTGTGTGCGTAATAACAG+CGG 0.729452 5_4:+9091603 Msa0835730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATTTCATTTACTTTAAA+TGG + chr5_4:9088638-9088657 Msa0835730:intron 10.0%
!!! AAATTATCTTATTATTGTTT+TGG + chr5_4:9088905-9088924 Msa0835730:intron 10.0%
!!! ATTTGAAATTCAAATTAATA+TGG - chr5_4:9089477-9089496 None:intergenic 10.0%
!!! TTAAATATTTAACTTTTATG+TGG + chr5_4:9089733-9089752 Msa0835730:intron 10.0%
!! GACAAATATATTAATAATAA+AGG - chr5_4:9090235-9090254 None:intergenic 10.0%
!!! TTTTTTACAAATTTCAGTTT+CGG + chr5_4:9088669-9088688 Msa0835730:intron 15.0%
!!! GTTTTGTTTTCTGTATAATT+GGG - chr5_4:9087948-9087967 None:intergenic 20.0%
!!! TGTTTTGTTTTCTGTATAAT+TGG - chr5_4:9087949-9087968 None:intergenic 20.0%
!!! AGTTTCTTTTTTTTTTGGTT+TGG + chr5_4:9088768-9088787 Msa0835730:intron 20.0%
!!! TCTTATTATTGTTTTGGAAT+TGG + chr5_4:9088911-9088930 Msa0835730:intron 20.0%
!!! TTTTCTTGATATTATTACAG+TGG + chr5_4:9088935-9088954 Msa0835730:intron 20.0%
!! TTTCTTGATATTATTACAGT+GGG + chr5_4:9088936-9088955 Msa0835730:intron 20.0%
!! TTAATTGAATCAATTCATGA+AGG - chr5_4:9089404-9089423 None:intergenic 20.0%
!!! TGAATTTGAAGTTGAAAAAA+TGG + chr5_4:9090457-9090476 Msa0835730:CDS 20.0%
!! TTGATAAAAATATTAACGAG+GGG - chr5_4:9091350-9091369 None:intergenic 20.0%
!!! GTTGATAAAAATATTAACGA+GGG - chr5_4:9091351-9091370 None:intergenic 20.0%
!! ACAAATAATAAGCATTAGTA+TGG - chr5_4:9091856-9091875 None:intergenic 20.0%
!! CTGTAAAATTTGATATACAA+TGG + chr5_4:9091992-9092011 Msa0835730:three_prime_UTR 20.0%
!!! ATGTTAAGAGTGTTATTTTT+AGG + chr5_4:9092043-9092062 Msa0835730:three_prime_UTR 20.0%
!!! TTGTAAATAATTTTTTCCTC+AGG + chr5_4:9092071-9092090 Msa0835730:three_prime_UTR 20.0%
!!! TGTAAATAATTTTTTCCTCA+GGG + chr5_4:9092072-9092091 Msa0835730:three_prime_UTR 20.0%
!! TATACATGCATTATATTTGT+AGG - chr5_4:9092104-9092123 None:intergenic 20.0%
! AAAAAGAGAGGTTTGAAAAT+TGG - chr5_4:9088041-9088060 None:intergenic 25.0%
! AAAAAAAAAAGAAACTCAGG+GGG - chr5_4:9088764-9088783 None:intergenic 25.0%
! CAAAAAAAAAAGAAACTCAG+GGG - chr5_4:9088765-9088784 None:intergenic 25.0%
! CCAAAAAAAAAAGAAACTCA+GGG - chr5_4:9088766-9088785 None:intergenic 25.0%
! ACCAAAAAAAAAAGAAACTC+AGG - chr5_4:9088767-9088786 None:intergenic 25.0%
!!! AGTGTTTTTTAGTTGTACTA+TGG + chr5_4:9088963-9088982 Msa0835730:intron 25.0%
! TAACTTCAATTTGTGCATAT+GGG + chr5_4:9089221-9089240 Msa0835730:intron 25.0%
! CTTTCTTAGATTCATTTCTT+TGG + chr5_4:9089524-9089543 Msa0835730:intron 25.0%
! CATTATTAAGTCAATTTCCT+AGG + chr5_4:9089958-9089977 Msa0835730:intron 25.0%
! ACTTATATTTGATTCTTCAG+AGG + chr5_4:9090533-9090552 Msa0835730:CDS 25.0%
!!! CATTAGATGTTTTGAATGAA+TGG + chr5_4:9090559-9090578 Msa0835730:CDS 25.0%
! GTTTCAAAGGAACAAATAAT+GGG + chr5_4:9090639-9090658 Msa0835730:CDS 25.0%
!! TATATGATTCCTTTGCATTT+TGG + chr5_4:9090691-9090710 Msa0835730:intron 25.0%
! GACATATATGAATATGCAAA+TGG - chr5_4:9090769-9090788 None:intergenic 25.0%
!! TCTGAAATTGTGTTTATGAA+TGG - chr5_4:9090879-9090898 None:intergenic 25.0%
! GTCTCATATTGAATGATATA+AGG - chr5_4:9090902-9090921 None:intergenic 25.0%
! TGATAAAAATATTAACGAGG+GGG - chr5_4:9091349-9091368 None:intergenic 25.0%
!! CGTTGATAAAAATATTAACG+AGG - chr5_4:9091352-9091371 None:intergenic 25.0%
!!! CGTTAATATTTTTATCAACG+TGG + chr5_4:9091352-9091371 Msa0835730:intron 25.0%
!!! AGTTTGATGCTTTGATTTTT+TGG + chr5_4:9091433-9091452 Msa0835730:intron 25.0%
! TAGTATGGTCAATAAGAATA+GGG - chr5_4:9091841-9091860 None:intergenic 25.0%
! TTAGTATGGTCAATAAGAAT+AGG - chr5_4:9091842-9091861 None:intergenic 25.0%
! CTTAACATCATAGACTTAAA+GGG - chr5_4:9092031-9092050 None:intergenic 25.0%
! TCTTAACATCATAGACTTAA+AGG - chr5_4:9092032-9092051 None:intergenic 25.0%
! TTTTCTGTATAATTGGGTTC+TGG - chr5_4:9087942-9087961 None:intergenic 30.0%
CTTATGTGTTGTAAAAAGAG+AGG - chr5_4:9088053-9088072 None:intergenic 30.0%
TTAGAACAACAAGAAGAAGA+AGG + chr5_4:9088125-9088144 Msa0835730:CDS 30.0%
CATAGTTTCTTCCATGAAAA+CGG - chr5_4:9088251-9088270 None:intergenic 30.0%
AAGAAACTATGGTTATTCAG+TGG + chr5_4:9088260-9088279 Msa0835730:CDS 30.0%
! TCTGATGAGTATAGCATTTT+TGG + chr5_4:9088292-9088311 Msa0835730:CDS 30.0%
TCTGATATTCAAGAGGTTAT+AGG + chr5_4:9088536-9088555 Msa0835730:CDS 30.0%
CTGATATTCAAGAGGTTATA+GGG + chr5_4:9088537-9088556 Msa0835730:CDS 30.0%
!! GCTATTAGGATTTTGAGTAA+TGG + chr5_4:9088569-9088588 Msa0835730:CDS 30.0%
! TTGTCATTACTGCTTTAGAT+TGG + chr5_4:9088615-9088634 Msa0835730:CDS 30.0%
! CGGTAAGTTTCATTTAAAGT+AGG + chr5_4:9088689-9088708 Msa0835730:intron 30.0%
!!! CCCTGAGTTTCTTTTTTTTT+TGG + chr5_4:9088763-9088782 Msa0835730:intron 30.0%
! CGAAGTATCTTCTTTGATTA+AGG + chr5_4:9088868-9088887 Msa0835730:intron 30.0%
! ATCAAGTTTAGAACCTAAAC+TGG - chr5_4:9089090-9089109 None:intergenic 30.0%
!! GTCTTTAGAGTTTCTTGTTA+TGG + chr5_4:9089133-9089152 Msa0835730:intron 30.0%
!!! TGAACCATATGTTTTGATAG+GGG - chr5_4:9089168-9089187 None:intergenic 30.0%
!!! CTGAACCATATGTTTTGATA+GGG - chr5_4:9089169-9089188 None:intergenic 30.0%
!!! ACTGAACCATATGTTTTGAT+AGG - chr5_4:9089170-9089189 None:intergenic 30.0%
CATATGCACAAATTGAAGTT+AGG - chr5_4:9089222-9089241 None:intergenic 30.0%
CTAACTTCAATTTGTGCATA+TGG + chr5_4:9089220-9089239 Msa0835730:intron 30.0%
AGAACAACTCTACATTCAAA+AGG - chr5_4:9089320-9089339 None:intergenic 30.0%
ACTCGTATATTACTTGATGA+AGG + chr5_4:9089352-9089371 Msa0835730:intron 30.0%
CTCGTATATTACTTGATGAA+GGG + chr5_4:9089353-9089372 Msa0835730:intron 30.0%
!! ATCTAAGAAAGCACTCTAAA+AGG - chr5_4:9089515-9089534 None:intergenic 30.0%
CATGGTTTCATCAATATTTC+TGG - chr5_4:9089626-9089645 None:intergenic 30.0%
AAAAGCAAGACAATTGATCA+TGG - chr5_4:9089644-9089663 None:intergenic 30.0%
!!! ATTGTCTTGCTTTTTCGTTT+TGG + chr5_4:9089650-9089669 Msa0835730:intron 30.0%
TTTGGCATTTAAGAAGCTAT+TGG + chr5_4:9089668-9089687 Msa0835730:intron 30.0%
AAGAAAGAGGAAAATGAAAC+TGG - chr5_4:9089769-9089788 None:intergenic 30.0%
TTCCTCTTTCTTGAGAATTA+TGG + chr5_4:9089777-9089796 Msa0835730:CDS 30.0%
AGCCATTATAGCAATAAGAA+CGG - chr5_4:9089829-9089848 None:intergenic 30.0%
! TTTTGCCTTTGTAGGTATTT+TGG + chr5_4:9090023-9090042 Msa0835730:intron 30.0%
! ATGGTACTGAAATAGCAAAT+AGG + chr5_4:9090280-9090299 Msa0835730:CDS 30.0%
ACTGAAATAGCAAATAGGAT+CGG + chr5_4:9090285-9090304 Msa0835730:CDS 30.0%
TATTCCCAATCCTGTATATA+TGG + chr5_4:9090355-9090374 Msa0835730:CDS 30.0%
ATTCCCAATCCTGTATATAT+GGG + chr5_4:9090356-9090375 Msa0835730:CDS 30.0%
TGAAGTTGAAAAAATGGATG+AGG + chr5_4:9090463-9090482 Msa0835730:CDS 30.0%
GAAGTTGAAAAAATGGATGA+GGG + chr5_4:9090464-9090483 Msa0835730:CDS 30.0%
ATAAGTGCAACTATCATAGT+CGG - chr5_4:9090519-9090538 None:intergenic 30.0%
! TTTGAAACCAAACAAAGCAA+GGG - chr5_4:9090627-9090646 None:intergenic 30.0%
GGTTTCAAAGGAACAAATAA+TGG + chr5_4:9090638-9090657 Msa0835730:CDS 30.0%
GTTATCCATTGTCAGTTTAT+TGG + chr5_4:9090731-9090750 Msa0835730:intron 30.0%
ATGTAAAGAGTCGTAACATT+TGG + chr5_4:9090800-9090819 Msa0835730:intron 30.0%
TGTAAAGAGTCGTAACATTT+GGG + chr5_4:9090801-9090820 Msa0835730:intron 30.0%
GAAATTGTGTTTATGAATGG+TGG - chr5_4:9090876-9090895 None:intergenic 30.0%
TCCACTACCATGTTAAAATT+TGG + chr5_4:9091019-9091038 Msa0835730:intron 30.0%
CCACTACCATGTTAAAATTT+GGG + chr5_4:9091020-9091039 Msa0835730:intron 30.0%
! ACCATGTTAAAATTTGGGTT+TGG + chr5_4:9091025-9091044 Msa0835730:intron 30.0%
!! GGCCTTATTTAATCAAATGT+GGG + chr5_4:9091109-9091128 Msa0835730:intron 30.0%
GTCCCACATTTGATTAAATA+AGG - chr5_4:9091114-9091133 None:intergenic 30.0%
AGATGGAATAGGTCTATATT+GGG - chr5_4:9091165-9091184 None:intergenic 30.0%
AAGATGGAATAGGTCTATAT+TGG - chr5_4:9091166-9091185 None:intergenic 30.0%
GATAATTTCTCTTACCTAAG+TGG + chr5_4:9091254-9091273 Msa0835730:intron 30.0%
!! ATTTTTATCAACGTGGATTG+AGG + chr5_4:9091359-9091378 Msa0835730:intron 30.0%
TGGTCTGTATTGAAATCATA+AGG - chr5_4:9091489-9091508 None:intergenic 30.0%
ATTCCTCAAAATCATGAAGT+AGG + chr5_4:9091775-9091794 Msa0835730:three_prime_UTR 30.0%
! TAATAACTTGCAACGATTCA+GGG + chr5_4:9091881-9091900 Msa0835730:three_prime_UTR 30.0%
GTACAGACAACCAATAAATA+AGG - chr5_4:9091919-9091938 None:intergenic 30.0%
!! TCTTCTTGTTGTTCTAACAG+AGG - chr5_4:9088122-9088141 None:intergenic 35.0%
! CTTTTCAGATGAATCGTAAG+CGG - chr5_4:9088159-9088178 None:intergenic 35.0%
! TAAGAATTCCACCGTTTTCA+TGG + chr5_4:9088237-9088256 Msa0835730:CDS 35.0%
! CGTTTTCATGGAAGAAACTA+TGG + chr5_4:9088249-9088268 Msa0835730:CDS 35.0%
!! AGTATAGCATTTTTGGATCC+TGG + chr5_4:9088299-9088318 Msa0835730:CDS 35.0%
!! ATTTTTGGATCCTGGAAACT+TGG + chr5_4:9088307-9088326 Msa0835730:CDS 35.0%
TAGAGATGAGTATCCTACTT+GGG + chr5_4:9088469-9088488 Msa0835730:CDS 35.0%
! ATGACTGAAGTTGCTTTGAT+TGG + chr5_4:9088512-9088531 Msa0835730:CDS 35.0%
!! GATTGGTTCTGATATTCAAG+AGG + chr5_4:9088529-9088548 Msa0835730:CDS 35.0%
!!! TAACCGTTTTTGAGTTTGCA+GGG - chr5_4:9088801-9088820 None:intergenic 35.0%
!! TTTTAGTTGTACTATGGACG+AGG + chr5_4:9088969-9088988 Msa0835730:intron 35.0%
! GTGTAGAGACACTAAGTTTT+AGG + chr5_4:9089049-9089068 Msa0835730:intron 35.0%
!!! ACTAAGTTTTAGGTTCCACA+TGG + chr5_4:9089059-9089078 Msa0835730:intron 35.0%
! GTTTAGAACCTAAACTGGTA+GGG - chr5_4:9089085-9089104 None:intergenic 35.0%
! AGTTTAGAACCTAAACTGGT+AGG - chr5_4:9089086-9089105 None:intergenic 35.0%
!! GGTTCTAAACTTGATGTAAG+AGG + chr5_4:9089095-9089114 Msa0835730:intron 35.0%
TCTAAACTTGATGTAAGAGG+AGG + chr5_4:9089098-9089117 Msa0835730:intron 35.0%
CTAAACTTGATGTAAGAGGA+GGG + chr5_4:9089099-9089118 Msa0835730:intron 35.0%
ACATCCCCTATCAAAACATA+TGG + chr5_4:9089161-9089180 Msa0835730:intron 35.0%
! CTAAAAGGTGTGTTTCTTCA+TGG - chr5_4:9089500-9089519 None:intergenic 35.0%
AGGAAAATGAAACTGGAACA+AGG - chr5_4:9089762-9089781 None:intergenic 35.0%
CACCATAATTCTCAAGAAAG+AGG - chr5_4:9089782-9089801 None:intergenic 35.0%
TTCTTGAGAATTATGGTGTG+AGG + chr5_4:9089784-9089803 Msa0835730:CDS 35.0%
GAATTATGGTGTGAGGAAAT+TGG + chr5_4:9089791-9089810 Msa0835730:CDS 35.0%
TGCCGTTCTTATTGCTATAA+TGG + chr5_4:9089824-9089843 Msa0835730:CDS 35.0%
! TGCTTTCATTTTGCCTTTGT+AGG + chr5_4:9090015-9090034 Msa0835730:intron 35.0%
AGGAACCAAAATACCTACAA+AGG - chr5_4:9090031-9090050 None:intergenic 35.0%
!! ATAGTTCTGGAGCTAAGTTT+AGG - chr5_4:9090051-9090070 None:intergenic 35.0%
!! AACAGCTTGTTGTATAGTTC+TGG - chr5_4:9090064-9090083 None:intergenic 35.0%
AGAACTATACAACAAGCTGT+TGG + chr5_4:9090063-9090082 Msa0835730:CDS 35.0%
GAATGCAAGAATACATTGTG+AGG - chr5_4:9090111-9090130 None:intergenic 35.0%
TTCCCAATCCTGTATATATG+GGG + chr5_4:9090357-9090376 Msa0835730:CDS 35.0%
TACCCCATATATACAGGATT+GGG - chr5_4:9090362-9090381 None:intergenic 35.0%
ATACCCCATATATACAGGAT+TGG - chr5_4:9090363-9090382 None:intergenic 35.0%
ATCCTGTATATATGGGGTAT+TGG + chr5_4:9090363-9090382 Msa0835730:CDS 35.0%
! TCCTGTATATATGGGGTATT+GGG + chr5_4:9090364-9090383 Msa0835730:CDS 35.0%
ACTATTACTGGTACATATGC+TGG + chr5_4:9090411-9090430 Msa0835730:CDS 35.0%
ATATGCTGGACAATTCATCA+TGG + chr5_4:9090425-9090444 Msa0835730:CDS 35.0%
TATGCTGGACAATTCATCAT+GGG + chr5_4:9090426-9090445 Msa0835730:CDS 35.0%
TAAGTGCAACTATCATAGTC+GGG - chr5_4:9090518-9090537 None:intergenic 35.0%
! ATTGATTCCCTTGCTTTGTT+TGG + chr5_4:9090617-9090636 Msa0835730:CDS 35.0%
!! CTTTGAAACCAAACAAAGCA+AGG - chr5_4:9090628-9090647 None:intergenic 35.0%
!! CTTGCTTTGTTTGGTTTCAA+AGG + chr5_4:9090626-9090645 Msa0835730:CDS 35.0%
!! ATAATGGGCACTTTCAAGAT+TGG + chr5_4:9090654-9090673 Msa0835730:CDS 35.0%
CAAAGGAATCATATACCTTG+AGG - chr5_4:9090686-9090705 None:intergenic 35.0%
CATGTCCAATAAACTGACAA+TGG - chr5_4:9090739-9090758 None:intergenic 35.0%
!!! CTTACAAGCCACTTTTGTAA+GGG - chr5_4:9090842-9090861 None:intergenic 35.0%
!! CCCAAATTTTAACATGGTAG+TGG - chr5_4:9091023-9091042 None:intergenic 35.0%
!! GCCAAACCCAAATTTTAACA+TGG - chr5_4:9091029-9091048 None:intergenic 35.0%
!! GGGCCTTATTTAATCAAATG+TGG + chr5_4:9091108-9091127 Msa0835730:intron 35.0%
!! TACCAAAGAGACTAGTTTCA+AGG + chr5_4:9091304-9091323 Msa0835730:intron 35.0%
AAAATATTAACGAGGGGGTA+GGG - chr5_4:9091344-9091363 None:intergenic 35.0%
AAAAATATTAACGAGGGGGT+AGG - chr5_4:9091345-9091364 None:intergenic 35.0%
TTTCAATACAGACCATTTCC+TGG + chr5_4:9091494-9091513 Msa0835730:intron 35.0%
! GATAAATGGCTATCTTTTGC+TGG + chr5_4:9091540-9091559 Msa0835730:CDS 35.0%
! TGTCCTACTTCATGATTTTG+AGG - chr5_4:9091781-9091800 None:intergenic 35.0%
! CTAATAACTTGCAACGATTC+AGG + chr5_4:9091880-9091899 Msa0835730:three_prime_UTR 35.0%
! AATAACTTGCAACGATTCAG+GGG + chr5_4:9091882-9091901 Msa0835730:three_prime_UTR 35.0%
! AGTGGTGGTACCTTATTTAT+TGG + chr5_4:9091906-9091925 Msa0835730:three_prime_UTR 35.0%
TATTGGACGTGAAAAGAAAC+AGG - chr5_4:9092143-9092162 None:intergenic 35.0%
GTTGTTCTAACAGAGGTTGT+TGG - chr5_4:9088115-9088134 None:intergenic 40.0%
CGCTTACGATTCATCTGAAA+AGG + chr5_4:9088157-9088176 Msa0835730:CDS 40.0%
TCTGAAAAGGTTGTCGTTGT+TGG + chr5_4:9088170-9088189 Msa0835730:CDS 40.0%
AGTTTCTTCCATGAAAACGG+TGG - chr5_4:9088248-9088267 None:intergenic 40.0%
GCTATACTCATCAGAAAACC+TGG - chr5_4:9088287-9088306 None:intergenic 40.0%
TTGGAAGGAGATCTTCAATC+TGG + chr5_4:9088326-9088345 Msa0835730:CDS 40.0%
TTCAATCTGGTGCAATTGCT+GGG + chr5_4:9088339-9088358 Msa0835730:CDS 40.0%
GCTGTTATGGCTTCTTATGT+GGG + chr5_4:9088367-9088386 Msa0835730:CDS 40.0%
! TGATTCAGCTTTTGTCAGCA+AGG + chr5_4:9088408-9088427 Msa0835730:CDS 40.0%
GTAGAGATGAGTATCCTACT+TGG + chr5_4:9088468-9088487 Msa0835730:CDS 40.0%
!! TAGGGAGTGCTATTGCTATT+AGG + chr5_4:9088555-9088574 Msa0835730:CDS 40.0%
!! TAATGGCCTTGTTCCTCTTT+GGG + chr5_4:9088586-9088605 Msa0835730:CDS 40.0%
TGACCCTGCAAACTCAAAAA+CGG + chr5_4:9088795-9088814 Msa0835730:intron 40.0%
!!! GTAACCGTTTTTGAGTTTGC+AGG - chr5_4:9088802-9088821 None:intergenic 40.0%
CTTCGAAATAACGCCATAAG+TGG - chr5_4:9088853-9088872 None:intergenic 40.0%
TGGGAAGAGAAGACAACAAA+TGG + chr5_4:9089240-9089259 Msa0835730:intron 40.0%
TAGATGTCACGTAAACCTGT+TGG + chr5_4:9089559-9089578 Msa0835730:intron 40.0%
AGATGTCACGTAAACCTGTT+GGG + chr5_4:9089560-9089579 Msa0835730:intron 40.0%
TAATGGCTCTCTCATTTGCA+TGG + chr5_4:9089841-9089860 Msa0835730:CDS 40.0%
CTCTCATTTGCATGGATGTT+TGG + chr5_4:9089849-9089868 Msa0835730:CDS 40.0%
ACAAGAACATCAACACCATC+TGG - chr5_4:9089885-9089904 None:intergenic 40.0%
!! GATGGTGTTGATGTTCTTGT+TGG + chr5_4:9089885-9089904 Msa0835730:CDS 40.0%
ATTCTGCTCTTGTTCAATCC+AGG + chr5_4:9090127-9090146 Msa0835730:CDS 40.0%
AATTGAGAGCTTCTTGAACG+CGG - chr5_4:9090176-9090195 None:intergenic 40.0%
! TGTCACAACTGTGTTTGCTA+AGG + chr5_4:9090251-9090270 Msa0835730:CDS 40.0%
! GTCACAACTGTGTTTGCTAA+GGG + chr5_4:9090252-9090271 Msa0835730:CDS 40.0%
!! GTGTTTGCTAAGGGCTTTTA+TGG + chr5_4:9090261-9090280 Msa0835730:CDS 40.0%
ACCCAATACCCCATATATAC+AGG - chr5_4:9090368-9090387 None:intergenic 40.0%
GCAAGGGAATCAATGCAAAA+GGG - chr5_4:9090611-9090630 None:intergenic 40.0%
AGCAAGGGAATCAATGCAAA+AGG - chr5_4:9090612-9090631 None:intergenic 40.0%
GCAGTTCAACCAAAATGCAA+AGG - chr5_4:9090703-9090722 None:intergenic 40.0%
! ACTTTTGTAAGGGTTGAGCT+AGG - chr5_4:9090832-9090851 None:intergenic 40.0%
TAGCTCAACCCTTACAAAAG+TGG + chr5_4:9090831-9090850 Msa0835730:intron 40.0%
!!! CCTTACAAGCCACTTTTGTA+AGG - chr5_4:9090843-9090862 None:intergenic 40.0%
! CCTTACAAAAGTGGCTTGTA+AGG + chr5_4:9090840-9090859 Msa0835730:intron 40.0%
TTACCCGAATAGCTTGATAG+CGG + chr5_4:9090964-9090983 Msa0835730:intron 40.0%
ATCCAAGATCCATTGGAGAT+TGG - chr5_4:9090995-9091014 None:intergenic 40.0%
GGAATCTATCCAAGATCCAT+TGG - chr5_4:9091002-9091021 None:intergenic 40.0%
AGTTTGGTAGGGGTTGAATT+GGG - chr5_4:9091051-9091070 None:intergenic 40.0%
AATGTCCACCACTCACATTT+CGG + chr5_4:9091087-9091106 Msa0835730:intron 40.0%
CAAATGTGGGACTCTTAACT+AGG + chr5_4:9091122-9091141 Msa0835730:intron 40.0%
CTTGAGAAGCAAGATGGAAT+AGG - chr5_4:9091176-9091195 None:intergenic 40.0%
ATCAAGCTTGAGAAGCAAGA+TGG - chr5_4:9091182-9091201 None:intergenic 40.0%
CTTGTTGAACTTAGCCACTT+AGG - chr5_4:9091271-9091290 None:intergenic 40.0%
CATAAGGATATCATGAGCTG+TGG - chr5_4:9091473-9091492 None:intergenic 40.0%
GCCATTTATCACTATCACCA+GGG - chr5_4:9091530-9091549 None:intergenic 40.0%
AGCCATTTATCACTATCACC+AGG - chr5_4:9091531-9091550 None:intergenic 40.0%
!!! TTCTTTTCCTCTGAAGTGAG+TGG + chr5_4:9091565-9091584 Msa0835730:CDS 40.0%
TGTTGTGTGCGTAATAACAG+CGG + chr5_4:9091603-9091622 Msa0835730:CDS 40.0%
! ACGTAACGGAGCTTGAAATA+AGG - chr5_4:9091651-9091670 None:intergenic 40.0%
TTGCCAAGGTGAAAACGTAA+CGG - chr5_4:9091665-9091684 None:intergenic 40.0%
GATCGAGTTAATCTTTGCCA+AGG - chr5_4:9091679-9091698 None:intergenic 40.0%
ATCAAAGACAGTTACCACCA+CGG + chr5_4:9091696-9091715 Msa0835730:CDS 40.0%
GCAGTAACATACCAAGTTAC+TGG - chr5_4:9091968-9091987 None:intergenic 40.0%
ATTTGTAGGTTCTATCCCTG+AGG - chr5_4:9092090-9092109 None:intergenic 40.0%
! TTGTTGGTGAGACATGGTGT+GGG - chr5_4:9088099-9088118 None:intergenic 45.0%
TTCGTAGGCTTCTTCTTCGT+CGG - chr5_4:9088198-9088217 None:intergenic 45.0%
CTATGGTTATTCAGTGGACC+AGG + chr5_4:9088266-9088285 Msa0835730:CDS 45.0%
TTGGATCCTGGAAACTTGGA+AGG + chr5_4:9088311-9088330 Msa0835730:CDS 45.0%
AGATCTCCTTCCAAGTTTCC+AGG - chr5_4:9088320-9088339 None:intergenic 45.0%
CTTCAATCTGGTGCAATTGC+TGG + chr5_4:9088338-9088357 Msa0835730:CDS 45.0%
TTGCTGGGTATTCGCTGTTA+TGG + chr5_4:9088354-9088373 Msa0835730:CDS 45.0%
CGCTGTTATGGCTTCTTATG+TGG + chr5_4:9088366-9088385 Msa0835730:CDS 45.0%
! TCTTATGTGGGCTACAGCTA+TGG + chr5_4:9088379-9088398 Msa0835730:CDS 45.0%
! CTTATGTGGGCTACAGCTAT+GGG + chr5_4:9088380-9088399 Msa0835730:CDS 45.0%
! TTATGTGGGCTACAGCTATG+GGG + chr5_4:9088381-9088400 Msa0835730:CDS 45.0%
! CAGCTTTTGTCAGCAAGGTT+AGG + chr5_4:9088413-9088432 Msa0835730:CDS 45.0%
!! AGCAAGGTTAGGTGTTGCTA+CGG + chr5_4:9088424-9088443 Msa0835730:CDS 45.0%
ATGAGTATCCTACTTGGGCA+AGG + chr5_4:9088474-9088493 Msa0835730:CDS 45.0%
AGAACAATCCTTGCCCAAGT+AGG - chr5_4:9088485-9088504 None:intergenic 45.0%
CTTGGGCAAGGATTGTTCTT+TGG + chr5_4:9088486-9088505 Msa0835730:CDS 45.0%
!! GTAATGGCCTTGTTCCTCTT+TGG + chr5_4:9088585-9088604 Msa0835730:CDS 45.0%
AGCCTCTGATGTCAGCTTAT+TGG + chr5_4:9088826-9088845 Msa0835730:intron 45.0%
GCCTCTGATGTCAGCTTATT+GGG + chr5_4:9088827-9088846 Msa0835730:intron 45.0%
TCAGCTTATTGGGCCACTTA+TGG + chr5_4:9088837-9088856 Msa0835730:intron 45.0%
TCACGTAAACCTGTTGGGAT+TGG + chr5_4:9089565-9089584 Msa0835730:intron 45.0%
CACGTAAACCTGTTGGGATT+GGG + chr5_4:9089566-9089585 Msa0835730:intron 45.0%
GTATTCTTCCCAATCCCAAC+AGG - chr5_4:9089577-9089596 None:intergenic 45.0%
TTTGGTGAAGCAAAGCCAGA+TGG + chr5_4:9089867-9089886 Msa0835730:CDS 45.0%
TATGAAGCATGAGCACACCT+AGG - chr5_4:9089978-9089997 None:intergenic 45.0%
CAACAAGCTGTTGGAGTTGT+TGG + chr5_4:9090072-9090091 Msa0835730:CDS 45.0%
! CAGGTTGACCCCAAAAAGAA+AGG + chr5_4:9090150-9090169 Msa0835730:CDS 45.0%
! TGAACGCGGCCTTTCTTTTT+GGG - chr5_4:9090162-9090181 None:intergenic 45.0%
! TTGAACGCGGCCTTTCTTTT+TGG - chr5_4:9090163-9090182 None:intergenic 45.0%
AAAGGAGACAACTAGCGCAA+TGG - chr5_4:9090217-9090236 None:intergenic 45.0%
! AGGATCGGTCTTGTAAATGC+AGG + chr5_4:9090300-9090319 Msa0835730:CDS 45.0%
! GGATCGGTCTTGTAAATGCA+GGG + chr5_4:9090301-9090320 Msa0835730:CDS 45.0%
CAGTACCTTCAGGAGAAGTA+TGG + chr5_4:9090324-9090343 Msa0835730:CDS 45.0%
! TACCTTCAGGAGAAGTATGG+AGG + chr5_4:9090327-9090346 Msa0835730:CDS 45.0%
GGTCAGAGTAGCACTATTAC+TGG + chr5_4:9090399-9090418 Msa0835730:CDS 45.0%
ACACCTCTCATGCTTAGTGT+TGG + chr5_4:9090929-9090948 Msa0835730:intron 45.0%
TGTCCAACACTAAGCATGAG+AGG - chr5_4:9090935-9090954 None:intergenic 45.0%
! CATGCTTAGTGTTGGACATC+TGG + chr5_4:9090937-9090956 Msa0835730:intron 45.0%
! TACCCGAATAGCTTGATAGC+GGG + chr5_4:9090965-9090984 Msa0835730:intron 45.0%
GTCCAATCTCCAATGGATCT+TGG + chr5_4:9090990-9091009 Msa0835730:intron 45.0%
CAGTTTGGTAGGGGTTGAAT+TGG - chr5_4:9091052-9091071 None:intergenic 45.0%
CAATTCAACCCCTACCAAAC+TGG + chr5_4:9091050-9091069 Msa0835730:intron 45.0%
CTTACAAGCCAGTTTGGTAG+GGG - chr5_4:9091061-9091080 None:intergenic 45.0%
CCTTACAAGCCAGTTTGGTA+GGG - chr5_4:9091062-9091081 None:intergenic 45.0%
ACCTTACAAGCCAGTTTGGT+AGG - chr5_4:9091063-9091082 None:intergenic 45.0%
ATGTCCACCACTCACATTTC+GGG + chr5_4:9091088-9091107 Msa0835730:intron 45.0%
AATAAGGCCCGAAATGTGAG+TGG - chr5_4:9091098-9091117 None:intergenic 45.0%
! GGCCTTGAAACTAGTCTCTT+TGG - chr5_4:9091309-9091328 None:intergenic 45.0%
GGGGTAGGGAACATAAAAAG+AGG - chr5_4:9091330-9091349 None:intergenic 45.0%
! GCCCTGGTGATAGTGATAAA+TGG + chr5_4:9091526-9091545 Msa0835730:CDS 45.0%
CAGTGTAGATGCCAGTAACT+TGG + chr5_4:9091954-9091973 Msa0835730:three_prime_UTR 45.0%
!! AAATTTAATCATTATTAATT+AGG + chr5_4:9091394-9091413 Msa0835730:intron 5.0%
GAACTAGTCACTGTCGAGTG+TGG - chr5_4:9088019-9088038 None:intergenic 50.0%
GTGGGTAATGATTCGCGTTG+CGG - chr5_4:9088081-9088100 None:intergenic 50.0%
! GTTGTTGGTGAGACATGGTG+TGG - chr5_4:9088100-9088119 None:intergenic 50.0%
! CAGAGGTTGTTGGTGAGACA+TGG - chr5_4:9088105-9088124 None:intergenic 50.0%
!! GCAAGGTTAGGTGTTGCTAC+GGG + chr5_4:9088425-9088444 Msa0835730:CDS 50.0%
!! CAAGGTTAGGTGTTGCTACG+GGG + chr5_4:9088426-9088445 Msa0835730:CDS 50.0%
TGTTGCTACGGGGAGACATT+TGG + chr5_4:9088436-9088455 Msa0835730:CDS 50.0%
ATGACAACACCAGCCCAAAG+AGG - chr5_4:9088602-9088621 None:intergenic 50.0%
GCCCAATAAGCTGACATCAG+AGG - chr5_4:9088831-9088850 None:intergenic 50.0%
TGCTCTTGTTCAATCCAGGC+AGG + chr5_4:9090131-9090150 Msa0835730:CDS 50.0%
! GAACGCGGCCTTTCTTTTTG+GGG - chr5_4:9090161-9090180 None:intergenic 50.0%
!! TAGCGCAATGGTGGACTCTA+TGG - chr5_4:9090205-9090224 None:intergenic 50.0%
AAATGCAGGGCAGTACCTTC+AGG + chr5_4:9090314-9090333 Msa0835730:CDS 50.0%
! CTTCAGGAGAAGTATGGAGG+CGG + chr5_4:9090330-9090349 Msa0835730:CDS 50.0%
! GGTATTGGGTTACTAGCAGC+TGG + chr5_4:9090378-9090397 Msa0835730:CDS 50.0%
GCTGGACAATTCATCATGGG+TGG + chr5_4:9090429-9090448 Msa0835730:CDS 50.0%
!! GGATGAGGGCGTTGATTACT+CGG + chr5_4:9090478-9090497 Msa0835730:CDS 50.0%
!! CAAGATTGGCTCTGTCCTCA+AGG + chr5_4:9090668-9090687 Msa0835730:CDS 50.0%
CACCCGCTATCAAGCTATTC+GGG - chr5_4:9090970-9090989 None:intergenic 50.0%
CCACCCGCTATCAAGCTATT+CGG - chr5_4:9090971-9090990 None:intergenic 50.0%
!! CCCTACCAAACTGGCTTGTA+AGG + chr5_4:9091059-9091078 Msa0835730:intron 50.0%
CCTCACCTTACAAGCCAGTT+TGG - chr5_4:9091067-9091086 None:intergenic 50.0%
!! CCAAACTGGCTTGTAAGGTG+AGG + chr5_4:9091064-9091083 Msa0835730:intron 50.0%
! ACAGACCATTTCCTGGCTTG+TGG + chr5_4:9091501-9091520 Msa0835730:intron 50.0%
! GCTCCGTTACGTTTTCACCT+TGG + chr5_4:9091659-9091678 Msa0835730:CDS 50.0%
CGTGGTAGCTACTATCTCTG+TGG - chr5_4:9091734-9091753 None:intergenic 50.0%
GTTGACTGCTGAACTTTGCG+TGG - chr5_4:9091752-9091771 None:intergenic 50.0%
AGGACATGCTCTGCTGCTAA+AGG + chr5_4:9091795-9091814 Msa0835730:three_prime_UTR 50.0%
TTGCAACGATTCAGGGGAAG+TGG + chr5_4:9091888-9091907 Msa0835730:three_prime_UTR 50.0%
AGAAGCCTACGAAGCTGACG+TGG + chr5_4:9088205-9088224 Msa0835730:CDS 55.0%
AGAGTCCACGTCAGCTTCGT+AGG - chr5_4:9088213-9088232 None:intergenic 55.0%
TACGAAGCTGACGTGGACTC+TGG + chr5_4:9088212-9088231 Msa0835730:CDS 55.0%
CACCAGCCCAAAGAGGAACA+AGG - chr5_4:9088595-9088614 None:intergenic 55.0%
CCTAAACTGGTAGGGCCATG+TGG - chr5_4:9089077-9089096 None:intergenic 55.0%
CCACATGGCCCTACCAGTTT+AGG + chr5_4:9089074-9089093 Msa0835730:intron 55.0%
!!! CTTTTTGGGGTCAACCTGCC+TGG - chr5_4:9090148-9090167 None:intergenic 55.0%
GGAGACAACTAGCGCAATGG+TGG - chr5_4:9090214-9090233 None:intergenic 55.0%
CGCCTCCATACTTCTCCTGA+AGG - chr5_4:9090332-9090351 None:intergenic 55.0%
!! CCGAATAGCTTGATAGCGGG+TGG + chr5_4:9090968-9090987 Msa0835730:intron 55.0%
AAGGCCCGAAATGTGAGTGG+TGG - chr5_4:9091095-9091114 None:intergenic 55.0%
CACTGCTCCACTCACTTCAG+AGG - chr5_4:9091575-9091594 None:intergenic 55.0%
CAACGATTCAGGGGAAGTGG+TGG + chr5_4:9091891-9091910 Msa0835730:three_prime_UTR 55.0%
!! GGCCTTGTTCCTCTTTGGGC+TGG + chr5_4:9088590-9088609 Msa0835730:CDS 60.0%
GCGGGTGGTCCAATCTCCAA+TGG + chr5_4:9090983-9091002 Msa0835730:intron 60.0%
GGCAGCCACAAGCCAGGAAA+TGG - chr5_4:9091509-9091528 None:intergenic 60.0%
TGTGGCTGCTCAACTCTCCG+TGG - chr5_4:9091716-9091735 None:intergenic 60.0%
! TTCCTGGCTTGTGGCTGCCC+TGG + chr5_4:9091510-9091529 Msa0835730:CDS 65.0%
GGCTGCTCAACTCTCCGTGG+TGG - chr5_4:9091713-9091732 None:intergenic 65.0%
CACCAGGGCAGCCACAAGCC+AGG - chr5_4:9091515-9091534 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 9087898 9092166 9087898 ID=Msa0835730;Name=Msa0835730
chr5_4 mRNA 9087898 9092166 9087898 ID=Msa0835730-mRNA-1;Parent=Msa0835730;Name=Msa0835730-mRNA-1;_AED=0.01;_eAED=0.01;_QI=206|1|1|1|1|1|4|440|514
chr5_4 exon 9087898 9088636 9087898 ID=Msa0835730-mRNA-1:exon:4005;Parent=Msa0835730-mRNA-1
chr5_4 exon 9089770 9089906 9089770 ID=Msa0835730-mRNA-1:exon:4006;Parent=Msa0835730-mRNA-1
chr5_4 exon 9090037 9090689 9090037 ID=Msa0835730-mRNA-1:exon:4007;Parent=Msa0835730-mRNA-1
chr5_4 exon 9091505 9092166 9091505 ID=Msa0835730-mRNA-1:exon:4008;Parent=Msa0835730-mRNA-1
chr5_4 five_prime_UTR 9087898 9088103 9087898 ID=Msa0835730-mRNA-1:five_prime_utr;Parent=Msa0835730-mRNA-1
chr5_4 CDS 9088104 9088636 9088104 ID=Msa0835730-mRNA-1:cds;Parent=Msa0835730-mRNA-1
chr5_4 CDS 9089770 9089906 9089770 ID=Msa0835730-mRNA-1:cds;Parent=Msa0835730-mRNA-1
chr5_4 CDS 9090037 9090689 9090037 ID=Msa0835730-mRNA-1:cds;Parent=Msa0835730-mRNA-1
chr5_4 CDS 9091505 9091726 9091505 ID=Msa0835730-mRNA-1:cds;Parent=Msa0835730-mRNA-1
chr5_4 three_prime_UTR 9091727 9092166 9091727 ID=Msa0835730-mRNA-1:three_prime_utr;Parent=Msa0835730-mRNA-1
Gene Sequence

>Msa0835730

ATGTCTCACCAACAACCTCTGTTAGAACAACAAGAAGAAGAAGGAGAAGAAACCGCTTACGATTCATCTGAAAAGGTTGTCGTTGTTGGAACCGACGAAGAAGAAGCCTACGAAGCTGACGTGGACTCTGGAGTAAGAATTCCACCGTTTTCATGGAAGAAACTATGGTTATTCAGTGGACCAGGTTTTCTGATGAGTATAGCATTTTTGGATCCTGGAAACTTGGAAGGAGATCTTCAATCTGGTGCAATTGCTGGGTATTCGCTGTTATGGCTTCTTATGTGGGCTACAGCTATGGGGCTTTTGATTCAGCTTTTGTCAGCAAGGTTAGGTGTTGCTACGGGGAGACATTTGGCTGAACTTTGTAGAGATGAGTATCCTACTTGGGCAAGGATTGTTCTTTGGTTGATGACTGAAGTTGCTTTGATTGGTTCTGATATTCAAGAGGTTATAGGGAGTGCTATTGCTATTAGGATTTTGAGTAATGGCCTTGTTCCTCTTTGGGCTGGTGTTGTCATTACTGCTTTAGATTGTTTCATTTTCCTCTTTCTTGAGAATTATGGTGTGAGGAAATTGGAAGCATTTTTTGCCGTTCTTATTGCTATAATGGCTCTCTCATTTGCATGGATGTTTGGTGAAGCAAAGCCAGATGGTGTTGATGTTCTTGTTGGTATTTTGGTTCCTAAACTTAGCTCCAGAACTATACAACAAGCTGTTGGAGTTGTTGGTTGCATTATTATGCCTCACAATGTATTCTTGCATTCTGCTCTTGTTCAATCCAGGCAGGTTGACCCCAAAAAGAAAGGCCGCGTTCAAGAAGCTCTCAATTACTACTCCATAGAGTCCACCATTGCGCTAGTTGTCTCCTTTATTATTAATATATTTGTCACAACTGTGTTTGCTAAGGGCTTTTATGGTACTGAAATAGCAAATAGGATCGGTCTTGTAAATGCAGGGCAGTACCTTCAGGAGAAGTATGGAGGCGGAGTATTCCCAATCCTGTATATATGGGGTATTGGGTTACTAGCAGCTGGTCAGAGTAGCACTATTACTGGTACATATGCTGGACAATTCATCATGGGTGGTTTTCTGAATTTGAAGTTGAAAAAATGGATGAGGGCGTTGATTACTCGGAGTTTCGCAATCGTCCCGACTATGATAGTTGCACTTATATTTGATTCTTCAGAGGAATCATTAGATGTTTTGAATGAATGGCTTAATGTTCTTCAGTCAGTGCAAATCCCTTTTGCATTGATTCCCTTGCTTTGTTTGGTTTCAAAGGAACAAATAATGGGCACTTTCAAGATTGGCTCTGTCCTCAAGACCATTTCCTGGCTTGTGGCTGCCCTGGTGATAGTGATAAATGGCTATCTTTTGCTGGAATTCTTTTCCTCTGAAGTGAGTGGAGCAGTGTTCACAACTGTTGTGTGCGTAATAACAGCGGCATACGTTGCATTCATTATTTACCTTATTTCAAGCTCCGTTACGTTTTCACCTTGGCAAAGATTAACTCGATCAAAGACAGTTACCACCACGGAGAGTTGA

Protein sequence

>Msa0835730

MSHQQPLLEQQEEEGEETAYDSSEKVVVVGTDEEEAYEADVDSGVRIPPFSWKKLWLFSGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGRHLAELCRDEYPTWARIVLWLMTEVALIGSDIQEVIGSAIAIRILSNGLVPLWAGVVITALDCFIFLFLENYGVRKLEAFFAVLIAIMALSFAWMFGEAKPDGVDVLVGILVPKLSSRTIQQAVGVVGCIIMPHNVFLHSALVQSRQVDPKKKGRVQEALNYYSIESTIALVVSFIINIFVTTVFAKGFYGTEIANRIGLVNAGQYLQEKYGGGVFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLKLKKWMRALITRSFAIVPTMIVALIFDSSEESLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGTFKIGSVLKTISWLVAALVIVINGYLLLEFFSSEVSGAVFTTVVCVITAAYVAFIIYLISSSVTFSPWQRLTRSKTVTTTES*