Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464750 | XP_024627692.1 | 97.101 | 276 | 8 | 0 | 1 | 276 | 1 | 276 | 0.0 | 560 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464750 | sp|Q9SXY1|FAS2_ARATH | 68.592 | 277 | 86 | 1 | 1 | 276 | 1 | 277 | 4.11e-141 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464750 | G7LE10 | 97.101 | 276 | 8 | 0 | 1 | 276 | 1 | 276 | 0.0 | 560 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018160 | Msa1464750 | 0.832308 | 1.018198e-55 | -8.615850e-47 |
| Msa0027280 | Msa1464750 | 0.809576 | 1.767483e-50 | -8.615850e-47 |
| Msa0036870 | Msa1464750 | 0.827414 | 1.584969e-54 | -8.615850e-47 |
| Msa0052260 | Msa1464750 | 0.833120 | 6.399928e-56 | -8.615850e-47 |
| Msa0090400 | Msa1464750 | 0.804942 | 1.695333e-49 | -8.615850e-47 |
| Msa0097260 | Msa1464750 | 0.817036 | 4.060313e-52 | -8.615850e-47 |
| Msa1372040 | Msa1464750 | 0.805978 | 1.028047e-49 | -8.615850e-47 |
| Msa0666700 | Msa1464750 | 0.804473 | 2.124417e-49 | -8.615850e-47 |
| Msa0735780 | Msa1464750 | 0.813753 | 2.181535e-51 | -8.615850e-47 |
| Msa0777750 | Msa1464750 | 0.823752 | 1.169457e-53 | -8.615850e-47 |
| Msa0795870 | Msa1464750 | 0.803600 | 3.225836e-49 | -8.615850e-47 |
| Msa0833650 | Msa1464750 | 0.807243 | 5.558026e-50 | -8.615850e-47 |
| Msa0146040 | Msa1464750 | 0.807589 | 4.695619e-50 | -8.615850e-47 |
| Msa0200050 | Msa1464750 | 0.806649 | 7.423626e-50 | -8.615850e-47 |
| Msa0209980 | Msa1464750 | 0.800043 | 1.734377e-48 | -8.615850e-47 |
| Msa1343180 | Msa1464750 | 0.810827 | 9.499843e-51 | -8.615850e-47 |
| Msa1030800 | Msa1464750 | 0.841406 | 4.843584e-58 | -8.615850e-47 |
| Msa1082200 | Msa1464750 | 0.813155 | 2.953996e-51 | -8.615850e-47 |
| Msa1090140 | Msa1464750 | 0.874877 | 4.789741e-68 | -8.615850e-47 |
| Msa0359020 | Msa1464750 | 0.805694 | 1.179367e-49 | -8.615850e-47 |
| Msa1119940 | Msa1464750 | 0.800444 | 1.436992e-48 | -8.615850e-47 |
| Msa1132840 | Msa1464750 | 0.809460 | 1.871934e-50 | -8.615850e-47 |
| Msa0580200 | Msa1464750 | 0.817109 | 3.910353e-52 | -8.615850e-47 |
| Msa0580370 | Msa1464750 | 0.809024 | 2.320643e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464750 | MtrunA17_Chr8g0384161 | 97.101 | 276 | 8 | 0 | 1 | 276 | 1 | 276 | 0.0 | 560 |
| Msa1464750 | MtrunA17_Chr2g0321211 | 31.225 | 253 | 136 | 6 | 11 | 250 | 11 | 238 | 8.16e-30 | 119 |
| Msa1464750 | MtrunA17_Chr4g0026671 | 30.798 | 263 | 128 | 7 | 11 | 250 | 11 | 242 | 3.08e-28 | 114 |
| Msa1464750 | MtrunA17_Chr1g0185501 | 32.536 | 209 | 117 | 5 | 52 | 244 | 13 | 213 | 2.26e-18 | 83.6 |
| Msa1464750 | MtrunA17_Chr1g0185501 | 27.273 | 209 | 101 | 5 | 16 | 182 | 114 | 313 | 7.53e-13 | 67.8 |
| Msa1464750 | MtrunA17_Chr4g0067151 | 28.019 | 207 | 130 | 5 | 55 | 244 | 18 | 222 | 1.50e-14 | 72.8 |
| Msa1464750 | MtrunA17_Chr4g0067151 | 24.904 | 261 | 171 | 7 | 28 | 281 | 42 | 284 | 4.29e-11 | 62.8 |
| Msa1464750 | MtrunA17_Chr6g0448921 | 27.848 | 158 | 97 | 3 | 25 | 181 | 29 | 170 | 2.14e-14 | 73.6 |
| Msa1464750 | MtrunA17_Chr6g0448921 | 25.444 | 169 | 111 | 2 | 13 | 181 | 59 | 212 | 1.33e-11 | 65.1 |
| Msa1464750 | MtrunA17_Chr7g0253861 | 29.496 | 139 | 92 | 2 | 44 | 181 | 35 | 168 | 2.31e-14 | 72.4 |
| Msa1464750 | MtrunA17_Chr5g0405851 | 29.762 | 168 | 102 | 4 | 21 | 187 | 261 | 413 | 5.88e-13 | 68.6 |
| Msa1464750 | MtrunA17_Chr3g0095501 | 28.194 | 227 | 135 | 8 | 34 | 244 | 242 | 456 | 3.87e-12 | 66.6 |
| Msa1464750 | MtrunA17_Chr2g0281451 | 25.000 | 232 | 138 | 7 | 28 | 243 | 31 | 242 | 4.45e-12 | 66.6 |
| Msa1464750 | MtrunA17_Chr2g0281451 | 24.852 | 169 | 112 | 2 | 13 | 181 | 58 | 211 | 2.11e-11 | 64.3 |
| Msa1464750 | MtrunA17_Chr1g0176241 | 30.894 | 123 | 79 | 1 | 60 | 182 | 366 | 482 | 7.85e-12 | 65.5 |
| Msa1464750 | MtrunA17_Chr3g0136971 | 26.036 | 169 | 110 | 3 | 13 | 181 | 419 | 572 | 1.22e-11 | 65.1 |
| Msa1464750 | MtrunA17_Chr3g0093681 | 27.381 | 168 | 106 | 3 | 21 | 187 | 364 | 516 | 1.50e-11 | 64.7 |
| Msa1464750 | MtrunA17_Chr1g0172501 | 27.381 | 168 | 106 | 3 | 21 | 187 | 364 | 516 | 1.50e-11 | 64.7 |
| Msa1464750 | MtrunA17_Chr4g0053651 | 31.429 | 140 | 81 | 2 | 57 | 187 | 406 | 539 | 2.51e-11 | 63.9 |
| Msa1464750 | MtrunA17_Chr8g0352821 | 27.807 | 187 | 117 | 6 | 16 | 199 | 312 | 483 | 3.58e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1464750 | AT5G64630.1 | 68.592 | 277 | 86 | 1 | 1 | 276 | 1 | 277 | 3.34e-142 | 406 |
| Msa1464750 | AT5G64630.2 | 68.592 | 277 | 86 | 1 | 1 | 276 | 1 | 277 | 4.18e-142 | 409 |
| Msa1464750 | AT5G64630.3 | 70.149 | 201 | 59 | 1 | 77 | 276 | 18 | 218 | 6.73e-102 | 305 |
| Msa1464750 | AT3G44530.1 | 30.196 | 255 | 136 | 7 | 11 | 250 | 11 | 238 | 1.12e-26 | 110 |
| Msa1464750 | AT3G44530.2 | 30.196 | 255 | 136 | 7 | 11 | 250 | 11 | 238 | 1.36e-26 | 109 |
| Msa1464750 | AT3G49660.1 | 29.150 | 247 | 148 | 8 | 56 | 285 | 14 | 250 | 2.68e-15 | 75.1 |
| Msa1464750 | AT3G49660.1 | 29.714 | 175 | 106 | 3 | 13 | 184 | 155 | 315 | 7.82e-12 | 65.1 |
| Msa1464750 | AT1G11160.3 | 29.412 | 170 | 103 | 4 | 13 | 181 | 16 | 169 | 3.92e-15 | 76.3 |
| Msa1464750 | AT2G43770.1 | 30.935 | 139 | 90 | 2 | 44 | 181 | 33 | 166 | 6.47e-15 | 74.3 |
| Msa1464750 | AT1G11160.2 | 29.412 | 170 | 103 | 4 | 13 | 181 | 58 | 211 | 2.55e-14 | 73.6 |
| Msa1464750 | AT1G11160.1 | 29.412 | 170 | 103 | 4 | 13 | 181 | 58 | 211 | 2.69e-14 | 73.6 |
| Msa1464750 | AT1G11160.4 | 29.412 | 170 | 103 | 4 | 13 | 181 | 58 | 211 | 2.83e-14 | 73.6 |
| Msa1464750 | AT1G61210.3 | 29.677 | 155 | 93 | 3 | 28 | 181 | 72 | 211 | 7.13e-13 | 69.3 |
| Msa1464750 | AT1G61210.3 | 25.490 | 153 | 97 | 3 | 30 | 181 | 33 | 169 | 5.69e-11 | 63.5 |
| Msa1464750 | AT1G61210.1 | 29.677 | 155 | 93 | 3 | 28 | 181 | 72 | 211 | 9.75e-13 | 68.9 |
| Msa1464750 | AT1G61210.1 | 25.490 | 153 | 97 | 3 | 30 | 181 | 33 | 169 | 6.70e-11 | 63.5 |
| Msa1464750 | AT1G61210.2 | 29.677 | 155 | 93 | 3 | 28 | 181 | 72 | 211 | 1.03e-12 | 68.9 |
| Msa1464750 | AT1G61210.2 | 25.490 | 153 | 97 | 3 | 30 | 181 | 33 | 169 | 7.48e-11 | 63.2 |
| Msa1464750 | AT5G67320.1 | 25.463 | 216 | 103 | 5 | 16 | 181 | 268 | 475 | 1.11e-12 | 68.6 |
| Msa1464750 | AT5G08390.1 | 27.215 | 158 | 98 | 3 | 25 | 181 | 29 | 170 | 2.97e-12 | 67.4 |
| Msa1464750 | AT5G23430.3 | 25.949 | 158 | 100 | 3 | 25 | 181 | 29 | 170 | 4.32e-12 | 67.0 |
| Msa1464750 | AT5G23430.3 | 23.377 | 154 | 103 | 2 | 16 | 169 | 104 | 242 | 9.60e-11 | 62.8 |
| Msa1464750 | AT5G23430.2 | 25.949 | 158 | 100 | 3 | 25 | 181 | 29 | 170 | 4.32e-12 | 67.0 |
| Msa1464750 | AT5G23430.2 | 23.377 | 154 | 103 | 2 | 16 | 169 | 104 | 242 | 9.60e-11 | 62.8 |
| Msa1464750 | AT5G23430.1 | 25.949 | 158 | 100 | 3 | 25 | 181 | 29 | 170 | 4.32e-12 | 67.0 |
| Msa1464750 | AT5G23430.1 | 23.377 | 154 | 103 | 2 | 16 | 169 | 104 | 242 | 9.34e-11 | 62.8 |
| Msa1464750 | AT5G52820.1 | 29.221 | 154 | 95 | 2 | 28 | 181 | 332 | 471 | 5.21e-12 | 66.2 |
| Msa1464750 | AT3G21540.1 | 27.711 | 166 | 105 | 3 | 25 | 190 | 76 | 226 | 5.42e-12 | 66.6 |
| Msa1464750 | AT1G73720.1 | 29.878 | 164 | 108 | 2 | 21 | 184 | 221 | 377 | 5.68e-12 | 66.2 |
| Msa1464750 | AT4G02730.1 | 26.336 | 262 | 158 | 8 | 28 | 281 | 58 | 292 | 1.39e-11 | 64.7 |
| Msa1464750 | AT4G02730.1 | 29.139 | 151 | 97 | 3 | 41 | 187 | 17 | 161 | 1.55e-11 | 64.3 |
| Msa1464750 | AT5G13480.3 | 27.811 | 169 | 105 | 5 | 16 | 182 | 240 | 393 | 3.06e-11 | 64.3 |
| Msa1464750 | AT5G13480.2 | 27.811 | 169 | 105 | 5 | 16 | 182 | 263 | 416 | 3.22e-11 | 64.3 |
| Msa1464750 | AT5G13480.4 | 27.811 | 169 | 105 | 5 | 16 | 182 | 240 | 393 | 3.41e-11 | 63.9 |
| Msa1464750 | AT5G13480.1 | 27.811 | 169 | 105 | 5 | 16 | 182 | 252 | 405 | 3.95e-11 | 63.9 |
| Msa1464750 | AT5G25150.1 | 27.811 | 169 | 107 | 3 | 13 | 181 | 418 | 571 | 5.55e-11 | 63.5 |
| Msa1464750 | AT5G25150.2 | 27.811 | 169 | 107 | 3 | 13 | 181 | 418 | 571 | 5.96e-11 | 63.5 |
Find 90 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCAACACCCTTTGATTTA+TGG | 0.105744 | tig0044610:+1236 | Msa1464750:intergenic |
| TTGATAATTCTTGCATTATA+TGG | 0.142799 | tig0044610:-1504 | Msa1464750:CDS |
| CTAATTGGATTCGAGAATTT+AGG | 0.165281 | tig0044610:+2900 | Msa1464750:intergenic |
| CTCAACACCCTTTGATTTAT+GGG | 0.254796 | tig0044610:+1237 | Msa1464750:intergenic |
| ACCTTGGAATTCTTTAATAA+TGG | 0.273035 | tig0044610:+1169 | Msa1464750:intergenic |
| TAAGCTGCATTTACAGATTC+AGG | 0.281279 | tig0044610:+275 | Msa1464750:intergenic |
| GTGGAACGGTTCAGATTAAT+TGG | 0.283065 | tig0044610:-2856 | Msa1464750:CDS |
| GGGTAGCCTGGGACCCTTTA+GGG | 0.287919 | tig0044610:-1315 | Msa1464750:CDS |
| ATCTCATGTCAAGGACATTA+TGG | 0.295539 | tig0044610:-1572 | Msa1464750:CDS |
| TTGCAAGCATGTTATTTCTA+AGG | 0.302678 | tig0044610:-1200 | Msa1464750:CDS |
| TTATGGTCAGTTAAACCTTC+TGG | 0.304531 | tig0044610:-2649 | Msa1464750:CDS |
| GGAAAGAAAGAAAGGGAATT+TGG | 0.319336 | tig0044610:+2970 | Msa1464750:intergenic |
| GTTATTCGCTTCTCTTCTTC+CGG | 0.322943 | tig0044610:-2559 | Msa1464750:intron |
| TAGGAGGTGAATTGTTAATA+TGG | 0.323433 | tig0044610:-2304 | Msa1464750:CDS |
| TCAGGGGAATTGTTAGCTTC+TGG | 0.327465 | tig0044610:-2445 | Msa1464750:intron |
| CTCACGTCACTAACATGTTT+TGG | 0.339400 | tig0044610:+112 | Msa1464750:intergenic |
| GGGGTAGCCTGGGACCCTTT+AGG | 0.345674 | tig0044610:-1316 | Msa1464750:CDS |
| TCTTAAGAACCTTCCATGTT+TGG | 0.355215 | tig0044610:+2258 | Msa1464750:intergenic |
| TTTCTAGAAAAGATCTTTCT+CGG | 0.365269 | tig0044610:-247 | Msa1464750:CDS |
| TGATAATTCTTGCATTATAT+GGG | 0.369746 | tig0044610:-1503 | Msa1464750:CDS |
| TAATTGGATTCGAGAATTTA+GGG | 0.372592 | tig0044610:+2901 | Msa1464750:intergenic |
| GAAAGGGAATTTGGCGCTCT+TGG | 0.376847 | tig0044610:+2979 | Msa1464750:intergenic |
| ATTTCAGGTTCTTACAAAAT+CGG | 0.390240 | tig0044610:-305 | Msa1464750:intron |
| AGCTATGATACGAGAGACTA+TGG | 0.397147 | tig0044610:+2593 | Msa1464750:intergenic |
| ATTATTTAACCTTGATATGC+AGG | 0.407955 | tig0044610:-82 | Msa1464750:three_prime_UTR |
| GGGGCTTACTGATGTAAATT+CGG | 0.412302 | tig0044610:+1257 | Msa1464750:intergenic |
| GTCGAAATCGGCGCCGGCGG+TGG | 0.417147 | tig0044610:+2778 | Msa1464750:intergenic |
| GAGTACCTTGATGTCGAAAT+CGG | 0.419824 | tig0044610:+2766 | Msa1464750:intergenic |
| TACCCATGCACACTATGTTC+AGG | 0.428891 | tig0044610:-1338 | Msa1464750:CDS |
| AAGCAATATACTTCCCTAAA+GGG | 0.441686 | tig0044610:+1302 | Msa1464750:intergenic |
| AGGAGAGAGGATGAAAATCT+AGG | 0.444191 | tig0044610:+2810 | Msa1464750:intergenic |
| ATGAAAATCTAGGGTCAAAA+CGG | 0.456456 | tig0044610:+2820 | Msa1464750:intergenic |
| TCATTTCTACTTGTGCCTGC+AGG | 0.457534 | tig0044610:-985 | Msa1464750:intron |
| TGATGTAAATTCGGCAAGTC+CGG | 0.458166 | tig0044610:+1266 | Msa1464750:intergenic |
| GAAGCAATATACTTCCCTAA+AGG | 0.462365 | tig0044610:+1301 | Msa1464750:intergenic |
| GAGGTAAGGGAAAGAAAGAA+AGG | 0.467887 | tig0044610:+2962 | Msa1464750:intergenic |
| CTTTCTTTAGAAGATTAGCT+TGG | 0.475618 | tig0044610:-1020 | Msa1464750:CDS |
| GATGGTGGATATATCATATC+CGG | 0.477811 | tig0044610:-1532 | Msa1464750:CDS |
| AGCTAATCTTCTAAAGAAAG+AGG | 0.478727 | tig0044610:+1023 | Msa1464750:intergenic |
| GGAAGGTTCTTAAGATGTTA+CGG | 0.484149 | tig0044610:-2250 | Msa1464750:intron |
| TTGTTAGCTTCTGGTTCTGA+TGG | 0.487437 | tig0044610:-2436 | Msa1464750:intron |
| GAAATCTAGAAACTGAGGTA+AGG | 0.488899 | tig0044610:+2948 | Msa1464750:intergenic |
| GCAAGAATTATCAACTGATC+CGG | 0.489164 | tig0044610:+1513 | Msa1464750:intergenic |
| GGCGCCGGCGGTGGCGAGAG+TGG | 0.492172 | tig0044610:+2787 | Msa1464750:intergenic |
| CTATGGACATAAGTAACTAC+TGG | 0.497360 | tig0044610:+2610 | Msa1464750:intergenic |
| TTGCTTCTCTTAGTTCTGAC+CGG | 0.499917 | tig0044610:-1285 | Msa1464750:CDS |
| TCCTCCACTCTCGCCACCGC+CGG | 0.506417 | tig0044610:-2791 | Msa1464750:CDS |
| TGAAAATCTAGGGTCAAAAC+GGG | 0.513397 | tig0044610:+2821 | Msa1464750:intergenic |
| TCAACACCCTTTGATTTATG+GGG | 0.521191 | tig0044610:+1238 | Msa1464750:intergenic |
| TATAGCAGGCCTGCATATCA+AGG | 0.522128 | tig0044610:+73 | Msa1464750:intergenic |
| ACCCATGCACACTATGTTCA+GGG | 0.526102 | tig0044610:-1337 | Msa1464750:CDS |
| CAGTAAGCCCCATAAATCAA+AGG | 0.530540 | tig0044610:-1245 | Msa1464750:CDS |
| GCACACGGAAGCTGTATAGC+AGG | 0.533198 | tig0044610:+59 | Msa1464750:intergenic |
| AAGCTACATTCAACGGATAC+CGG | 0.534046 | tig0044610:-2281 | Msa1464750:CDS |
| ACAAGTAGAAATGAACCATC+TGG | 0.534204 | tig0044610:+994 | Msa1464750:intergenic |
| GGAGAGAGGATGAAAATCTA+GGG | 0.535173 | tig0044610:+2811 | Msa1464750:intergenic |
| GCCATTATTAAAGAATTCCA+AGG | 0.535247 | tig0044610:-1170 | Msa1464750:intron |
| ATACTTCCCTAAAGGGTCCC+AGG | 0.540607 | tig0044610:+1309 | Msa1464750:intergenic |
| CATGGGTATCCAACGTCTGA+AGG | 0.542223 | tig0044610:+1353 | Msa1464750:intergenic |
| CTGAATTAGATCTCATGTCA+AGG | 0.544197 | tig0044610:-1581 | Msa1464750:intron |
| CACCATCAGTAGACCACTCC+AGG | 0.547065 | tig0044610:+1548 | Msa1464750:intergenic |
| AAATCTAGAAACTGAGGTAA+GGG | 0.549698 | tig0044610:+2949 | Msa1464750:intergenic |
| AAGAACCTTCCATGTTTGGC+CGG | 0.550032 | tig0044610:+2262 | Msa1464750:intergenic |
| AAGAGGGCAATGTTTCATCA+TGG | 0.552525 | tig0044610:+1040 | Msa1464750:intergenic |
| AGTAAGCCCCATAAATCAAA+GGG | 0.552990 | tig0044610:-1244 | Msa1464750:CDS |
| AGGTAAGGGAAAGAAAGAAA+GGG | 0.554936 | tig0044610:+2963 | Msa1464750:intergenic |
| CTTGATGTCGAAATCGGCGC+CGG | 0.562663 | tig0044610:+2772 | Msa1464750:intergenic |
| GATCGAAGATCGAAAATGAA+AGG | 0.568510 | tig0044610:-2878 | Msa1464750:exon |
| CAACGGATACCGGCCAAACA+TGG | 0.571072 | tig0044610:-2271 | Msa1464750:CDS |
| GATGTCGAAATCGGCGCCGG+CGG | 0.578100 | tig0044610:+2775 | Msa1464750:intergenic |
| GCTAATCTTCTAAAGAAAGA+GGG | 0.578416 | tig0044610:+1024 | Msa1464750:intergenic |
| GTGGCGAGAGTGGAGGAGAG+AGG | 0.578840 | tig0044610:+2797 | Msa1464750:intergenic |
| AATATGGAAGCTACATTCAA+CGG | 0.583979 | tig0044610:-2288 | Msa1464750:CDS |
| GACCTGGAGTGGTCTACTGA+TGG | 0.591206 | tig0044610:-1550 | Msa1464750:CDS |
| CGAAGATCGAAAATGAAAGG+TGG | 0.592725 | tig0044610:-2875 | Msa1464750:exon |
| CGGCGCCGATTTCGACATCA+AGG | 0.597052 | tig0044610:-2771 | Msa1464750:intron |
| TGTCAAGGACATTATGGACC+TGG | 0.600660 | tig0044610:-1566 | Msa1464750:CDS |
| ATCGAAAATGAAAGGTGGAA+CGG | 0.602727 | tig0044610:-2870 | Msa1464750:exon |
| GCCGGCGGTGGCGAGAGTGG+AGG | 0.602972 | tig0044610:+2790 | Msa1464750:intergenic |
| CTGGAGTGGTCTACTGATGG+TGG | 0.606311 | tig0044610:-1547 | Msa1464750:CDS |
| AGATTAGCTTGGTCTCCAGA+TGG | 0.606836 | tig0044610:-1009 | Msa1464750:CDS |
| CCCCTGAACATAGTGTGCAT+GGG | 0.610840 | tig0044610:+1336 | Msa1464750:intergenic |
| ACAACAGCTTTGCTTGCACA+CGG | 0.611738 | tig0044610:+44 | Msa1464750:intergenic |
| AGGAACTAACCTTCAGACGT+TGG | 0.618886 | tig0044610:-1362 | Msa1464750:CDS |
| ATGTAGAAATCTAGAAACTG+AGG | 0.637464 | tig0044610:+2943 | Msa1464750:intergenic |
| ATTATATGGGATGTTAACAA+AGG | 0.639783 | tig0044610:-1490 | Msa1464750:intron |
| GGATACCGGCCAAACATGGA+AGG | 0.640280 | tig0044610:-2267 | Msa1464750:CDS |
| CCCATGCACACTATGTTCAG+GGG | 0.644214 | tig0044610:-1336 | Msa1464750:CDS |
| AGGACATTATGGACCTGGAG+TGG | 0.656666 | tig0044610:-1561 | Msa1464750:CDS |
| CCATGCACACTATGTTCAGG+GGG | 0.683808 | tig0044610:-1335 | Msa1464750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTATTTTAAATTAAAA+CGG | + | tig0044610:1231-1250 | Msa1464750:intergenic | 0.0% |
| !!! | ATTTTTTTTTTTTATGTTTC+AGG | - | tig0044610:550-569 | Msa1464750:intron | 10.0% |
| !!! | TTTTTTTTTTTTATGTTTCA+GGG | - | tig0044610:551-570 | Msa1464750:intron | 10.0% |
| !!! | TTATTTAGCTTTTTTTTTTT+AGG | - | tig0044610:827-846 | Msa1464750:intron | 10.0% |
| !! | TAACTAATTAATTGAATGAT+GGG | + | tig0044610:290-309 | Msa1464750:intergenic | 15.0% |
| !! | TTAACTAATTAATTGAATGA+TGG | + | tig0044610:291-310 | Msa1464750:intergenic | 15.0% |
| !!! | TTTTTTTTTTTATGTTTCAG+GGG | - | tig0044610:552-571 | Msa1464750:intron | 15.0% |
| !!! | CTATTTTTTTGTTTCTTTTT+AGG | - | tig0044610:690-709 | Msa1464750:intron | 15.0% |
| !!! | AACTAACAATACATAAATTT+TGG | + | tig0044610:2506-2525 | Msa1464750:intergenic | 15.0% |
| !! | TTTCAATGAAATGAATTTAC+CGG | + | tig0044610:476-495 | Msa1464750:intergenic | 20.0% |
| !! | AAAAAAAAAAATCAACAGCA+GGG | + | tig0044610:615-634 | Msa1464750:intergenic | 20.0% |
| !! | AAAAAAAAAAAATCAACAGC+AGG | + | tig0044610:616-635 | Msa1464750:intergenic | 20.0% |
| !!! | TTTTTTTGTTTCTTTTTAGG+AGG | - | tig0044610:693-712 | Msa1464750:intron | 20.0% |
| !! | TATTTCTCTCTTTCATTAAA+TGG | + | tig0044610:932-951 | Msa1464750:intergenic | 20.0% |
| !!! | AAGAAAATTATTGATTTCCT+AGG | - | tig0044610:1042-1061 | Msa1464750:CDS | 20.0% |
| !!! | AATTTTGTTTGATTTCTTTC+CGG | - | tig0044610:1254-1273 | Msa1464750:CDS | 20.0% |
| !! | AGTAAAGGTTATTATTTCAT+AGG | - | tig0044610:1292-1311 | Msa1464750:CDS | 20.0% |
| !!! | TTGATAATTCTTGCATTATA+TGG | - | tig0044610:1509-1528 | Msa1464750:CDS | 20.0% |
| !! | TGATAATTCTTGCATTATAT+GGG | - | tig0044610:1510-1529 | Msa1464750:CDS | 20.0% |
| !! | GCAAAAAAAGTAAGATAAAT+TGG | + | tig0044610:2083-2102 | Msa1464750:intergenic | 20.0% |
| !! | AAATAGTATATATCATTCAG+TGG | + | tig0044610:2615-2634 | Msa1464750:intergenic | 20.0% |
| !!! | TATACTATTTTCTTCCTTTA+TGG | - | tig0044610:2625-2644 | Msa1464750:CDS | 20.0% |
| !!! | ATGATAAAAAGTATGCTTTT+GGG | + | tig0044610:2821-2840 | Msa1464750:intergenic | 20.0% |
| !!! | AATGATAAAAAGTATGCTTT+TGG | + | tig0044610:2822-2841 | Msa1464750:intergenic | 20.0% |
| ! | TAATTGGATTCGAGAATTTA+GGG | + | tig0044610:115-134 | Msa0914520:intergenic | 25.0% |
| ! | AGAAATCTAATCAGAAACAT+TGG | + | tig0044610:672-691 | Msa1464750:intergenic | 25.0% |
| ! | AGCTAAATAATGCAAATAAG+TGG | + | tig0044610:817-836 | Msa1464750:intergenic | 25.0% |
| ! | CAAAATAAGAACTTGAAATG+TGG | - | tig0044610:1090-1109 | Msa1464750:intron | 25.0% |
| ! | AAAAGTAGATATGGAAGTAA+AGG | - | tig0044610:1277-1296 | Msa1464750:CDS | 25.0% |
| !!! | GTATGATTGATTTTTGTGAA+TGG | + | tig0044610:1339-1358 | Msa1464750:intergenic | 25.0% |
| ! | ATTGATGCAGTAAAACATAA+AGG | + | tig0044610:1388-1407 | Msa1464750:intergenic | 25.0% |
| ! | ATTATATGGGATGTTAACAA+AGG | - | tig0044610:1523-1542 | Msa1464750:CDS | 25.0% |
| ! | ACCTTGGAATTCTTTAATAA+TGG | + | tig0044610:1847-1866 | Msa1464750:intergenic | 25.0% |
| ! | TGTGTATTATTCATTGCAAA+TGG | - | tig0044610:2162-2181 | Msa1464750:intron | 25.0% |
| !! | GATTTTCTGTTATAAAACAG+AGG | + | tig0044610:2305-2324 | Msa1464750:intergenic | 25.0% |
| ! | TATGATAGGATACTGAATTT+GGG | + | tig0044610:2376-2395 | Msa1464750:intergenic | 25.0% |
| ! | TTATGATAGGATACTGAATT+TGG | + | tig0044610:2377-2396 | Msa1464750:intergenic | 25.0% |
| ! | AATCTCTATGCAATTATGAT+AGG | + | tig0044610:2390-2409 | Msa1464750:intergenic | 25.0% |
| ! | TTCCTGTGAATGAAATATAA+TGG | + | tig0044610:2450-2469 | Msa1464750:intergenic | 25.0% |
| ! | ATAGTTTAGATGCAACTTAT+AGG | - | tig0044610:2584-2603 | Msa1464750:CDS | 25.0% |
| !! | ATTTTGTAAGAACCTGAAAT+GGG | + | tig0044610:2708-2727 | Msa1464750:intergenic | 25.0% |
| !!! | ATTTCAGGTTCTTACAAAAT+CGG | - | tig0044610:2708-2727 | Msa1464750:intron | 25.0% |
| !! | TTTCTAGAAAAGATCTTTCT+CGG | - | tig0044610:2766-2785 | Msa1464750:intron | 25.0% |
| ! | ATTATTTAACCTTGATATGC+AGG | - | tig0044610:2931-2950 | Msa1464750:five_prime_UTR | 25.0% |
| AAATCTAGAAACTGAGGTAA+GGG | + | tig0044610:67-86 | Msa0914520:intergenic | 30.0% | |
| ATGTAGAAATCTAGAAACTG+AGG | + | tig0044610:73-92 | Msa0914520:intergenic | 30.0% | |
| CTAATTGGATTCGAGAATTT+AGG | + | tig0044610:116-135 | Msa0914520:intergenic | 30.0% | |
| ! | TTTTCGATCTTCGATCTAAT+TGG | + | tig0044610:131-150 | Msa0914520:intergenic | 30.0% |
| ! | ATGAAAATCTAGGGTCAAAA+CGG | + | tig0044610:196-215 | Msa1464750:intergenic | 30.0% |
| TGTTCTAATCTTCACAGTTA+TGG | - | tig0044610:347-366 | Msa1464750:intron | 30.0% | |
| TAGGAGGTGAATTGTTAATA+TGG | - | tig0044610:709-728 | Msa1464750:intron | 30.0% | |
| AATATGGAAGCTACATTCAA+CGG | - | tig0044610:725-744 | Msa1464750:intron | 30.0% | |
| TGCTAACTAATTGTCGATAA+CGG | - | tig0044610:900-919 | Msa1464750:intron | 30.0% | |
| AATGCGATGATAAATAGAGA+AGG | - | tig0044610:957-976 | Msa1464750:intron | 30.0% | |
| ATGCGATGATAAATAGAGAA+GGG | - | tig0044610:958-977 | Msa1464750:intron | 30.0% | |
| !! | AGAAGGGTATCAAAGAAAAA+AGG | - | tig0044610:974-993 | Msa1464750:intron | 30.0% |
| TTTAAATGTAGAAGAAGCCA+AGG | + | tig0044610:1190-1209 | Msa1464750:intergenic | 30.0% | |
| !! | TACTTCCATATCTACTTTTC+CGG | + | tig0044610:1276-1295 | Msa1464750:intergenic | 30.0% |
| CATCAATTAGCTGGTTAAAA+TGG | - | tig0044610:1401-1420 | Msa1464750:intron | 30.0% | |
| AAGCAATATACTTCCCTAAA+GGG | + | tig0044610:1714-1733 | Msa1464750:intergenic | 30.0% | |
| !! | TTGCAAGCATGTTATTTCTA+AGG | - | tig0044610:1813-1832 | Msa1464750:intron | 30.0% |
| GCCATTATTAAAGAATTCCA+AGG | - | tig0044610:1843-1862 | Msa1464750:intron | 30.0% | |
| ! | TAGATATCTAAAGCTAACCT+TGG | + | tig0044610:1863-1882 | Msa1464750:intergenic | 30.0% |
| ! | GTATTTGATTTCTCTGTAGA+TGG | - | tig0044610:1888-1907 | Msa1464750:intron | 30.0% |
| ! | GCTAATCTTCTAAAGAAAGA+GGG | + | tig0044610:1992-2011 | Msa1464750:intergenic | 30.0% |
| ! | AGCTAATCTTCTAAAGAAAG+AGG | + | tig0044610:1993-2012 | Msa1464750:intergenic | 30.0% |
| ! | CTTTCTTTAGAAGATTAGCT+TGG | - | tig0044610:1993-2012 | Msa1464750:intron | 30.0% |
| ! | ATCAAGATTAACTTCTGGTT+AGG | + | tig0044610:2060-2079 | Msa1464750:intergenic | 30.0% |
| ATTGGATCAAGATTAACTTC+TGG | + | tig0044610:2065-2084 | Msa1464750:intergenic | 30.0% | |
| GTGAATAAGCTATTGCAATT+TGG | - | tig0044610:2112-2131 | Msa1464750:intron | 30.0% | |
| TGTTATAAAACAGAGGATAG+GGG | + | tig0044610:2298-2317 | Msa1464750:intergenic | 30.0% | |
| CTGTTATAAAACAGAGGATA+GGG | + | tig0044610:2299-2318 | Msa1464750:intergenic | 30.0% | |
| TCTGTTATAAAACAGAGGAT+AGG | + | tig0044610:2300-2319 | Msa1464750:intergenic | 30.0% | |
| GTCCATTATATTTCATTCAC+AGG | - | tig0044610:2445-2464 | Msa1464750:intron | 30.0% | |
| ATATTTCATTCACAGGAAAG+TGG | - | tig0044610:2452-2471 | Msa1464750:intron | 30.0% | |
| ACAGTTCACTAAACAACAAA+GGG | + | tig0044610:2561-2580 | Msa1464750:intergenic | 30.0% | |
| ! | GATTTTGTAAGAACCTGAAA+TGG | + | tig0044610:2709-2728 | Msa1464750:intergenic | 30.0% |
| GGAAAGAAAGAAAGGGAATT+TGG | + | tig0044610:46-65 | Msa0914520:intergenic | 35.0% | |
| AGGTAAGGGAAAGAAAGAAA+GGG | + | tig0044610:53-72 | Msa0914520:intergenic | 35.0% | |
| GAAATCTAGAAACTGAGGTA+AGG | + | tig0044610:68-87 | Msa0914520:intergenic | 35.0% | |
| GATCGAAGATCGAAAATGAA+AGG | - | tig0044610:135-154 | Msa1464750:three_prime_UTR | 35.0% | |
| ATCGAAAATGAAAGGTGGAA+CGG | - | tig0044610:143-162 | Msa1464750:three_prime_UTR | 35.0% | |
| ! | TGAAAATCTAGGGTCAAAAC+GGG | + | tig0044610:195-214 | Msa1464750:intergenic | 35.0% |
| ! | TAATTGAATGATGGGAGTGA+AGG | + | tig0044610:282-301 | Msa1464750:intergenic | 35.0% |
| TTATGGTCAGTTAAACCTTC+TGG | - | tig0044610:364-383 | Msa1464750:intron | 35.0% | |
| CTATGGACATAAGTAACTAC+TGG | + | tig0044610:406-425 | Msa1464750:intergenic | 35.0% | |
| TCTTAAGAACCTTCCATGTT+TGG | + | tig0044610:758-777 | Msa1464750:intergenic | 35.0% | |
| GGAAGGTTCTTAAGATGTTA+CGG | - | tig0044610:763-782 | Msa1464750:intron | 35.0% | |
| ATGCAAATAAGTGGTCATCA+AGG | + | tig0044610:808-827 | Msa1464750:intergenic | 35.0% | |
| ATAAGAACTTGAAATGTGGC+AGG | - | tig0044610:1094-1113 | Msa1464750:intron | 35.0% | |
| CACATTTCAAACAAGCTGTA+AGG | - | tig0044610:1161-1180 | Msa1464750:intron | 35.0% | |
| TCTTTCCGGAAAAGTAGATA+TGG | - | tig0044610:1268-1287 | Msa1464750:CDS | 35.0% | |
| ! | GTTTTACTGCATCAATTAGC+TGG | - | tig0044610:1392-1411 | Msa1464750:intron | 35.0% |
| CTGAATTAGATCTCATGTCA+AGG | - | tig0044610:1432-1451 | Msa1464750:intron | 35.0% | |
| ATCTCATGTCAAGGACATTA+TGG | - | tig0044610:1441-1460 | Msa1464750:intron | 35.0% | |
| !! | GATGGTGGATATATCATATC+CGG | - | tig0044610:1481-1500 | Msa1464750:intron | 35.0% |
| GCAAGAATTATCAACTGATC+CGG | + | tig0044610:1503-1522 | Msa1464750:intergenic | 35.0% | |
| TTCTGAACATGCTTTAACAG+TGG | - | tig0044610:1568-1587 | Msa1464750:CDS | 35.0% | |
| !! | ATTGTAGTTCTGAACAAGCT+TGG | - | tig0044610:1594-1613 | Msa1464750:intron | 35.0% |
| ! | AGGTTAGTTCCTGACATAAA+TGG | + | tig0044610:1643-1662 | Msa1464750:intergenic | 35.0% |
| GAAGCAATATACTTCCCTAA+AGG | + | tig0044610:1715-1734 | Msa1464750:intergenic | 35.0% | |
| AGTAAGCCCCATAAATCAAA+GGG | - | tig0044610:1769-1788 | Msa1464750:intron | 35.0% | |
| ! | TCAACACCCTTTGATTTATG+GGG | + | tig0044610:1778-1797 | Msa1464750:intergenic | 35.0% |
| ! | CTCAACACCCTTTGATTTAT+GGG | + | tig0044610:1779-1798 | Msa1464750:intergenic | 35.0% |
| ! | TCTCAACACCCTTTGATTTA+TGG | + | tig0044610:1780-1799 | Msa1464750:intergenic | 35.0% |
| ACAAGTAGAAATGAACCATC+TGG | + | tig0044610:2022-2041 | Msa1464750:intergenic | 35.0% | |
| TATTGCAATTTGGTAGAACC+TGG | - | tig0044610:2122-2141 | Msa1464750:intron | 35.0% | |
| GCTTAAAGCTCTTAAAACTG+TGG | - | tig0044610:2189-2208 | Msa1464750:intron | 35.0% | |
| GTTAGGAGTTCAAATAACTC+GGG | + | tig0044610:2237-2256 | Msa1464750:intergenic | 35.0% | |
| GGTTAGGAGTTCAAATAACT+CGG | + | tig0044610:2238-2257 | Msa1464750:intergenic | 35.0% | |
| ! | AGTGAGTAAAGCATTCAGTT+AGG | + | tig0044610:2275-2294 | Msa1464750:intergenic | 35.0% |
| TGACAATATTCTGTTAGGAG+GGG | + | tig0044610:2327-2346 | Msa1464750:intergenic | 35.0% | |
| GTGACAATATTCTGTTAGGA+GGG | + | tig0044610:2328-2347 | Msa1464750:intergenic | 35.0% | |
| TGTGACAATATTCTGTTAGG+AGG | + | tig0044610:2329-2348 | Msa1464750:intergenic | 35.0% | |
| GACTGTGACAATATTCTGTT+AGG | + | tig0044610:2332-2351 | Msa1464750:intergenic | 35.0% | |
| TCACAGTCATCACATCAATT+GGG | - | tig0044610:2344-2363 | Msa1464750:intron | 35.0% | |
| AGTTCACTAAACAACAAAGG+GGG | + | tig0044610:2559-2578 | Msa1464750:intergenic | 35.0% | |
| CAGTTCACTAAACAACAAAG+GGG | + | tig0044610:2560-2579 | Msa1464750:intergenic | 35.0% | |
| CACAGTTCACTAAACAACAA+AGG | + | tig0044610:2562-2581 | Msa1464750:intergenic | 35.0% | |
| TAAGCTGCATTTACAGATTC+AGG | + | tig0044610:2741-2760 | Msa1464750:intergenic | 35.0% | |
| GAGGTAAGGGAAAGAAAGAA+AGG | + | tig0044610:54-73 | Msa0914520:intergenic | 40.0% | |
| CGAAGATCGAAAATGAAAGG+TGG | - | tig0044610:138-157 | Msa1464750:three_prime_UTR | 40.0% | |
| GTGGAACGGTTCAGATTAAT+TGG | - | tig0044610:157-176 | Msa1464750:three_prime_UTR | 40.0% | |
| GGAGAGAGGATGAAAATCTA+GGG | + | tig0044610:205-224 | Msa1464750:intergenic | 40.0% | |
| AGGAGAGAGGATGAAAATCT+AGG | + | tig0044610:206-225 | Msa1464750:intergenic | 40.0% | |
| GAGTACCTTGATGTCGAAAT+CGG | + | tig0044610:250-269 | Msa1464750:intergenic | 40.0% | |
| ! | AGCTTCTTTTGTGATCCAGA+AGG | + | tig0044610:382-401 | Msa1464750:intergenic | 40.0% |
| AGCTATGATACGAGAGACTA+TGG | + | tig0044610:423-442 | Msa1464750:intergenic | 40.0% | |
| GTTATTCGCTTCTCTTCTTC+CGG | - | tig0044610:454-473 | Msa1464750:intron | 40.0% | |
| !! | TTGTTAGCTTCTGGTTCTGA+TGG | - | tig0044610:577-596 | Msa1464750:intron | 40.0% |
| AAGCTACATTCAACGGATAC+CGG | - | tig0044610:732-751 | Msa1464750:intron | 40.0% | |
| !! | AAGTTGTTTTGCACGAACCT+AGG | + | tig0044610:1062-1081 | Msa1464750:intergenic | 40.0% |
| !! | TGTGGCAGGTTTTGTGAATT+TGG | - | tig0044610:1108-1127 | Msa1464750:intron | 40.0% |
| !! | GCAGGTTTTGTGAATTTGGT+TGG | - | tig0044610:1112-1131 | Msa1464750:intron | 40.0% |
| AACAAGCTGTAAGGTTTCCT+TGG | - | tig0044610:1170-1189 | Msa1464750:intron | 40.0% | |
| GCACTTGTTCCATTTATGTC+AGG | - | tig0044610:1631-1650 | Msa1464750:intron | 40.0% | |
| !! | TTGCTTCTCTTAGTTCTGAC+CGG | - | tig0044610:1728-1747 | Msa1464750:intron | 40.0% |
| TGATGTAAATTCGGCAAGTC+CGG | + | tig0044610:1750-1769 | Msa1464750:intergenic | 40.0% | |
| GGGGCTTACTGATGTAAATT+CGG | + | tig0044610:1759-1778 | Msa1464750:intergenic | 40.0% | |
| CAGTAAGCCCCATAAATCAA+AGG | - | tig0044610:1768-1787 | Msa1464750:intron | 40.0% | |
| TTGTCACATACACTGACATC+AGG | - | tig0044610:1912-1931 | Msa1464750:intron | 40.0% | |
| AAGAGGGCAATGTTTCATCA+TGG | + | tig0044610:1976-1995 | Msa1464750:intergenic | 40.0% | |
| TTGGTAGAACCTGGAAAATC+AGG | - | tig0044610:2131-2150 | Msa1464750:intron | 40.0% | |
| ! | AGTTGTTTGCCTGATTTTCC+AGG | + | tig0044610:2143-2162 | Msa1464750:intergenic | 40.0% |
| !! | AGTTAGGAGAAAGTACTCTC+TGG | + | tig0044610:2259-2278 | Msa1464750:intergenic | 40.0% |
| GTCACAGTCATCACATCAAT+TGG | - | tig0044610:2343-2362 | Msa1464750:intron | 40.0% | |
| AGGATACTGAATTTGGGCTT+TGG | + | tig0044610:2370-2389 | Msa1464750:intergenic | 40.0% | |
| AGCTAAGCAGGAATCCATAA+AGG | + | tig0044610:2642-2661 | Msa1464750:intergenic | 40.0% | |
| ! | CTCACGTCACTAACATGTTT+TGG | + | tig0044610:2904-2923 | Msa1464750:intergenic | 40.0% |
| ! | TCAGGGGAATTGTTAGCTTC+TGG | - | tig0044610:568-587 | Msa1464750:intron | 45.0% |
| AAGAACCTTCCATGTTTGGC+CGG | + | tig0044610:754-773 | Msa1464750:intergenic | 45.0% | |
| TGTCAAGGACATTATGGACC+TGG | - | tig0044610:1447-1466 | Msa1464750:intron | 45.0% | |
| AGGAACTAACCTTCAGACGT+TGG | - | tig0044610:1651-1670 | Msa1464750:intron | 45.0% | |
| TACCCATGCACACTATGTTC+AGG | - | tig0044610:1675-1694 | Msa1464750:intron | 45.0% | |
| ACCCATGCACACTATGTTCA+GGG | - | tig0044610:1676-1695 | Msa1464750:intron | 45.0% | |
| !! | AGATTAGCTTGGTCTCCAGA+TGG | - | tig0044610:2004-2023 | Msa1464750:intron | 45.0% |
| TCATTTCTACTTGTGCCTGC+AGG | - | tig0044610:2028-2047 | Msa1464750:intron | 45.0% | |
| !! | GGAGAAAGTACTCTCTGGTT+AGG | + | tig0044610:2254-2273 | Msa1464750:intergenic | 45.0% |
| GGGGGAAATTAAAAGCTGTC+TGG | + | tig0044610:2541-2560 | Msa1464750:intergenic | 45.0% | |
| CCATGTAGCAAAAGCTAAGC+AGG | + | tig0044610:2654-2673 | Msa1464750:intergenic | 45.0% | |
| !! | CCTGCTTAGCTTTTGCTACA+TGG | - | tig0044610:2651-2670 | Msa1464750:CDS | 45.0% |
| TTCACGTCTCTACCCATTTC+AGG | - | tig0044610:2693-2712 | Msa1464750:intron | 45.0% | |
| TATAGCAGGCCTGCATATCA+AGG | + | tig0044610:2943-2962 | Msa1464750:intergenic | 45.0% | |
| ACAACAGCTTTGCTTGCACA+CGG | + | tig0044610:2972-2991 | Msa1464750:intergenic | 45.0% | |
| GAAAGGGAATTTGGCGCTCT+TGG | + | tig0044610:37-56 | Msa0914520:intergenic | 50.0% | |
| AGGACATTATGGACCTGGAG+TGG | - | tig0044610:1452-1471 | Msa1464750:intron | 50.0% | |
| CATGGGTATCCAACGTCTGA+AGG | + | tig0044610:1663-1682 | Msa1464750:intergenic | 50.0% | |
| CCCCTGAACATAGTGTGCAT+GGG | + | tig0044610:1680-1699 | Msa1464750:intergenic | 50.0% | |
| CCCATGCACACTATGTTCAG+GGG | - | tig0044610:1677-1696 | Msa1464750:intron | 50.0% | |
| CCATGCACACTATGTTCAGG+GGG | - | tig0044610:1678-1697 | Msa1464750:intron | 50.0% | |
| ATACTTCCCTAAAGGGTCCC+AGG | + | tig0044610:1707-1726 | Msa1464750:intergenic | 50.0% | |
| CTGGTTAGGTGAATACCTGC+AGG | + | tig0044610:2046-2065 | Msa1464750:intergenic | 50.0% | |
| TCACAGGAAAGTGGACGAAG+TGG | - | tig0044610:2461-2480 | Msa1464750:intron | 50.0% | |
| CTTGATGTCGAAATCGGCGC+CGG | + | tig0044610:244-263 | Msa1464750:intergenic | 55.0% | |
| CAACGGATACCGGCCAAACA+TGG | - | tig0044610:742-761 | Msa1464750:intron | 55.0% | |
| GGATACCGGCCAAACATGGA+AGG | - | tig0044610:746-765 | Msa1464750:intron | 55.0% | |
| GACCTGGAGTGGTCTACTGA+TGG | - | tig0044610:1463-1482 | Msa1464750:intron | 55.0% | |
| CACCATCAGTAGACCACTCC+AGG | + | tig0044610:1468-1487 | Msa1464750:intergenic | 55.0% | |
| CTGGAGTGGTCTACTGATGG+TGG | - | tig0044610:1466-1485 | Msa1464750:intron | 55.0% | |
| CCCCCTGAACATAGTGTGCA+TGG | + | tig0044610:1681-1700 | Msa1464750:intergenic | 55.0% | |
| ACTATGTTCAGGGGGTAGCC+TGG | - | tig0044610:1686-1705 | Msa1464750:intron | 55.0% | |
| CTATGTTCAGGGGGTAGCCT+GGG | - | tig0044610:1687-1706 | Msa1464750:intron | 55.0% | |
| GCACACGGAAGCTGTATAGC+AGG | + | tig0044610:2957-2976 | Msa1464750:intergenic | 55.0% | |
| !! | CGGCGCCGATTTCGACATCA+AGG | - | tig0044610:242-261 | Msa1464750:CDS | 60.0% |
| GGGTAGCCTGGGACCCTTTA+GGG | - | tig0044610:1698-1717 | Msa1464750:intron | 60.0% | |
| GTGGCGAGAGTGGAGGAGAG+AGG | + | tig0044610:219-238 | Msa1464750:intergenic | 65.0% | |
| ! | GATGTCGAAATCGGCGCCGG+CGG | + | tig0044610:241-260 | Msa1464750:intergenic | 65.0% |
| GGGGTAGCCTGGGACCCTTT+AGG | - | tig0044610:1697-1716 | Msa1464750:intron | 65.0% | |
| TCCTCCACTCTCGCCACCGC+CGG | - | tig0044610:222-241 | Msa1464750:CDS | 70.0% | |
| !! | GTCGAAATCGGCGCCGGCGG+TGG | + | tig0044610:238-257 | Msa1464750:intergenic | 75.0% |
| ! | GCCGGCGGTGGCGAGAGTGG+AGG | + | tig0044610:226-245 | Msa1464750:intergenic | 80.0% |
| !!! | GGCGCCGGCGGTGGCGAGAG+TGG | + | tig0044610:229-248 | Msa1464750:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0044610 | gene | 33 | 3002 | 33 | ID=Msa1464750;Name=Msa1464750 |
| tig0044610 | mRNA | 33 | 3002 | 33 | ID=Msa1464750-mRNA-1;Parent=Msa1464750;Name=Msa1464750-mRNA-1;_AED=0.00;_eAED=0.00;_QI=117|1|1|1|1|1|8|151|291 |
| tig0044610 | exon | 33 | 320 | 33 | ID=Msa1464750-mRNA-1:exon:24570;Parent=Msa1464750-mRNA-1 |
| tig0044610 | exon | 986 | 1082 | 986 | ID=Msa1464750-mRNA-1:exon:24569;Parent=Msa1464750-mRNA-1 |
| tig0044610 | exon | 1171 | 1382 | 1171 | ID=Msa1464750-mRNA-1:exon:24568;Parent=Msa1464750-mRNA-1 |
| tig0044610 | exon | 1491 | 1594 | 1491 | ID=Msa1464750-mRNA-1:exon:24567;Parent=Msa1464750-mRNA-1 |
| tig0044610 | exon | 2251 | 2323 | 2251 | ID=Msa1464750-mRNA-1:exon:24566;Parent=Msa1464750-mRNA-1 |
| tig0044610 | exon | 2437 | 2463 | 2437 | ID=Msa1464750-mRNA-1:exon:24565;Parent=Msa1464750-mRNA-1 |
| tig0044610 | exon | 2560 | 2671 | 2560 | ID=Msa1464750-mRNA-1:exon:24564;Parent=Msa1464750-mRNA-1 |
| tig0044610 | exon | 2772 | 3002 | 2772 | ID=Msa1464750-mRNA-1:exon:24563;Parent=Msa1464750-mRNA-1 |
| tig0044610 | five_prime_UTR | 2886 | 3002 | 2886 | ID=Msa1464750-mRNA-1:five_prime_utr;Parent=Msa1464750-mRNA-1 |
| tig0044610 | CDS | 2772 | 2885 | 2772 | ID=Msa1464750-mRNA-1:cds;Parent=Msa1464750-mRNA-1 |
| tig0044610 | CDS | 2560 | 2671 | 2560 | ID=Msa1464750-mRNA-1:cds;Parent=Msa1464750-mRNA-1 |
| tig0044610 | CDS | 2437 | 2463 | 2437 | ID=Msa1464750-mRNA-1:cds;Parent=Msa1464750-mRNA-1 |
| tig0044610 | CDS | 2251 | 2323 | 2251 | ID=Msa1464750-mRNA-1:cds;Parent=Msa1464750-mRNA-1 |
| tig0044610 | CDS | 1491 | 1594 | 1491 | ID=Msa1464750-mRNA-1:cds;Parent=Msa1464750-mRNA-1 |
| tig0044610 | CDS | 1171 | 1382 | 1171 | ID=Msa1464750-mRNA-1:cds;Parent=Msa1464750-mRNA-1 |
| tig0044610 | CDS | 986 | 1082 | 986 | ID=Msa1464750-mRNA-1:cds;Parent=Msa1464750-mRNA-1 |
| tig0044610 | CDS | 184 | 320 | 184 | ID=Msa1464750-mRNA-1:cds;Parent=Msa1464750-mRNA-1 |
| tig0044610 | three_prime_UTR | 33 | 183 | 33 | ID=Msa1464750-mRNA-1:three_prime_utr;Parent=Msa1464750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
