AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0200050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0200050 MtrunA17_Chr2g0294831 94.805 924 27 2 1 904 1 923 0.0 1784
Msa0200050 MtrunA17_Chr7g0271711 33.298 952 535 25 6 902 2 908 9.78e-120 386
Msa0200050 MtrunA17_Chr1g0192581 30.182 878 445 35 60 901 9 754 1.25e-70 249
Msa0200050 MtrunA17_Chr7g0250831 26.087 437 222 15 511 904 559 937 3.06e-18 90.1
Msa0200050 MtrunA17_Chr6g0457761 25.284 352 221 10 570 902 550 878 3.18e-14 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0200050 AT3G58650.1 31.887 922 475 32 12 902 11 810 7.33e-98 325
Msa0200050 AT5G26910.4 31.447 919 511 29 6 902 5 826 1.65e-91 309
Msa0200050 AT5G26910.1 31.447 919 511 29 6 902 5 826 1.65e-91 309
Msa0200050 AT5G26910.3 31.338 919 511 29 6 902 5 825 1.84e-91 308
Msa0200050 AT5G26910.2 41.767 249 128 5 6 240 5 250 1.74e-41 162
Msa0200050 AT3G05750.4 38.994 159 91 2 745 902 637 790 4.76e-23 105
Msa0200050 AT3G05750.3 38.994 159 91 2 745 902 542 695 5.00e-23 105
Msa0200050 AT3G05750.2 38.994 159 91 2 745 902 542 695 5.00e-23 105
Msa0200050 AT3G05750.1 38.994 159 91 2 745 902 645 798 5.64e-23 105
Msa0200050 AT1G67040.1 31.466 232 124 11 12 223 28 244 1.35e-11 68.9
Msa0200050 AT1G67040.2 31.466 232 124 11 12 223 28 244 1.55e-11 68.9

Find 192 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATTGATCTTGCCGATTT+TGG 0.126247 2_1:+19535700 None:intergenic
CCCTCAACTTCTGTTCTAAA+AGG 0.206450 2_1:+19534477 None:intergenic
GATTCTCAGTTTCTATATTC+TGG 0.225407 2_1:-19535829 Msa0200050:CDS
ACAAAACCGGGATTCTTAAT+AGG 0.234211 2_1:+19535652 None:intergenic
TGATCAAATATTTAATTCTT+TGG 0.234441 2_1:-19533207 Msa0200050:CDS
TAATAGGGGACAAAAGTTTA+TGG 0.239442 2_1:+19535668 None:intergenic
TTCATAGAAGTTGGATTATC+AGG 0.247443 2_1:-19533079 Msa0200050:three_prime_UTR
GATTCTTCTTTGAATAATAA+AGG 0.253439 2_1:-19535265 Msa0200050:CDS
GAGGTTGATGCTTATGAATT+TGG 0.255705 2_1:-19533242 Msa0200050:CDS
GGATTGCTGCTCCTTGTTAA+TGG 0.259788 2_1:+19534641 None:intergenic
TAATGTAGTTGCAAGGCTTA+TGG 0.290220 2_1:-19535926 Msa0200050:CDS
TTATGTTTCAATGATGATTC+TGG 0.299384 2_1:+19534305 None:intergenic
CCAATTACATTGTATCCTAT+TGG 0.304963 2_1:+19534518 None:intergenic
CCAATAGGATACAATGTAAT+TGG 0.307017 2_1:-19534518 Msa0200050:CDS
CAACAATCCTGCTTATATAA+TGG 0.326959 2_1:-19535623 Msa0200050:CDS
CAATGATGATTCTGGAAGAT+TGG 0.328218 2_1:+19534313 None:intergenic
AATCCAACCACTTTCCATAT+TGG 0.332576 2_1:+19533267 None:intergenic
TGAGAACATTAGAAGAATTC+TGG 0.343239 2_1:+19535074 None:intergenic
AATGTAGTTGCAAGGCTTAT+GGG 0.343622 2_1:-19535925 Msa0200050:CDS
TCTAAAGTTAACCTCAATCT+AGG 0.348348 2_1:-19534416 Msa0200050:CDS
CTCCCTTTCGGCTTTCCAAC+TGG 0.349402 2_1:+19533528 None:intergenic
CAAAACCGGGATTCTTAATA+GGG 0.350999 2_1:+19535653 None:intergenic
AAAAGTTTATGGTGTGTAAC+AGG 0.355362 2_1:+19535679 None:intergenic
TTTGCCTCCTTCCGGTTTCT+CGG 0.358423 2_1:-19535893 Msa0200050:CDS
GGGATCTTCTAGCAATTTCA+TGG 0.358544 2_1:-19535785 Msa0200050:CDS
TTAGATTCTTTGCCTCCTTC+CGG 0.359642 2_1:-19535901 Msa0200050:CDS
ACGACTGGAGATTCCTCTTA+TGG 0.366120 2_1:-19534956 Msa0200050:CDS
GTTGGCAAAAGATGTGTATA+AGG 0.368623 2_1:-19533357 Msa0200050:CDS
AGATCAAGATATGTCGTTTA+CGG 0.368642 2_1:-19534378 Msa0200050:CDS
AAGGATATGAGTAGCCAATA+TGG 0.377746 2_1:-19533281 Msa0200050:CDS
GACCGGTGGCAGAAATTTGA+TGG 0.381328 2_1:-19535179 Msa0200050:CDS
CAATGTAGAGTTAATGTATA+TGG 0.382857 2_1:-19533600 Msa0200050:CDS
ATAAGCCTTGCAACTACATT+AGG 0.385722 2_1:+19535928 None:intergenic
AGCAAAGGCTAAAGCGCATT+TGG 0.386167 2_1:-19535563 Msa0200050:CDS
TTAATTGATTCTATTATTGA+TGG 0.386235 2_1:-19532971 Msa0200050:three_prime_UTR
AATTTGCATAGGAAATCTTC+TGG 0.387773 2_1:-19535097 Msa0200050:CDS
AATGCGCTTTAGCCTTTGCT+TGG 0.391802 2_1:+19535566 None:intergenic
GGAGACTTAACAGATGTTTC+CGG 0.393264 2_1:+19535304 None:intergenic
CGCTCTTGAAACCTCCCTTT+CGG 0.395032 2_1:+19533516 None:intergenic
GAATGCTGTGAAGTGTTTAC+AGG 0.396936 2_1:-19535359 Msa0200050:CDS
TGTTATTCATTCATAGAAGT+TGG 0.402578 2_1:-19533088 Msa0200050:three_prime_UTR
GGCAATGAGACATCCCTATC+TGG 0.407656 2_1:-19536150 Msa0200050:intron
ATTCTTCTTTGAATAATAAA+GGG 0.413579 2_1:-19535264 Msa0200050:CDS
GATTGATATTGCTACCAGAT+AGG 0.414071 2_1:+19536136 None:intergenic
ATAGAAACTGAGAATCTTGA+AGG 0.414969 2_1:+19535836 None:intergenic
CTAGTGAGTAATAAACAATA+TGG 0.417569 2_1:-19534722 Msa0200050:CDS
TGTCATTATTATCAATTGAA+TGG 0.417904 2_1:+19535029 None:intergenic
ATTTGCCTTAGGTGGTTGAT+TGG 0.419546 2_1:+19535129 None:intergenic
TTGGAAACCAATGGCTTAGA+TGG 0.421919 2_1:+19534998 None:intergenic
TAATTTCTTACGCGATTTCG+AGG 0.425164 2_1:+19536335 None:intergenic
AGAAGTATTGCCTCCAAAAT+CGG 0.425187 2_1:-19535713 Msa0200050:CDS
GTTAACTTTAGAAACATCAT+TGG 0.426304 2_1:+19534427 None:intergenic
GAAGGCTCAAGAACTGAGAT+TGG 0.428155 2_1:+19533987 None:intergenic
GACAATCTTTGAACAAAAGC+TGG 0.430363 2_1:-19535336 Msa0200050:CDS
GGATACAAAATGTGGACAAA+AGG 0.432659 2_1:-19533407 Msa0200050:CDS
CATCATTGAAACATAAATCA+TGG 0.434027 2_1:-19534298 Msa0200050:CDS
ATATGCAGAGTCTTTGAAAC+AGG 0.436345 2_1:-19536195 Msa0200050:intron
CAGGTCGATGAAGACGAAAA+TGG 0.438366 2_1:-19536033 Msa0200050:CDS
GCTTCTATGCCGTCCATAAG+AGG 0.439709 2_1:+19534943 None:intergenic
ATTGTTGGATGGAACAAAAC+CGG 0.440286 2_1:+19535639 None:intergenic
ATGAAGACGAAAATGGTGTT+GGG 0.440544 2_1:-19536026 Msa0200050:CDS
GAAAGGGATGAGAGATTCAA+TGG 0.441206 2_1:-19533321 Msa0200050:CDS
TCTAGGAAAATTATTTGTCC+TGG 0.441310 2_1:+19534832 None:intergenic
CCGCAAGAATTCTTGAACCT+GGG 0.445062 2_1:-19535594 Msa0200050:CDS
TTCTATGAATGAATAACAAT+AGG 0.447781 2_1:+19533093 None:intergenic
ACTGAAGATGTCGCAATAAG+AGG 0.450581 2_1:+19535475 None:intergenic
AGAATTCTTCTAATGTTCTC+AGG 0.451320 2_1:-19535072 Msa0200050:CDS
TGATTGTGTGAGTGAATGTA+TGG 0.451480 2_1:-19533459 Msa0200050:CDS
GTTTCTATATTCTGGAAAGT+TGG 0.452052 2_1:-19535821 Msa0200050:CDS
CGCTTTAGCCTTTGCTTGGG+AGG 0.453823 2_1:+19535570 None:intergenic
GCCCATCAAATTTCTGCCAC+CGG 0.457784 2_1:+19535177 None:intergenic
GGTTGATGAGCTTGTGGATA+AGG 0.459758 2_1:-19533300 Msa0200050:CDS
CATGGAGTCAAAGCCTCAAA+AGG 0.460709 2_1:-19535767 Msa0200050:CDS
GTAATTGGCGGCGATGCCTT+AGG 0.460790 2_1:-19534503 Msa0200050:CDS
CTCACTAGATTTGACTTCGC+TGG 0.460882 2_1:+19534737 None:intergenic
GACAATACAAGGTCTCCAAT+AGG 0.471049 2_1:-19534533 Msa0200050:CDS
ATGCGCTTTAGCCTTTGCTT+GGG 0.471863 2_1:+19535567 None:intergenic
TTGAGATGTAGAAGTTATGT+TGG 0.471928 2_1:-19533434 Msa0200050:CDS
TTCTGAGCATTTGCCTTAGG+TGG 0.472013 2_1:+19535121 None:intergenic
TGTCGAGGTGTCACAGAACC+TGG 0.473644 2_1:+19534620 None:intergenic
TGGAAAGTGGTTGGATTATG+AGG 0.473906 2_1:-19533261 Msa0200050:CDS
CCATTTAATAATGTTTCAAA+CGG 0.475409 2_1:-19537442 None:intergenic
CAACCTCGCGAGATCGGCCG+AGG 0.475906 2_1:+19533570 None:intergenic
TCAAGAACTGAGATTGGACT+TGG 0.479255 2_1:+19533993 None:intergenic
GCCGCAAGAATTCTTGAACC+TGG 0.480122 2_1:-19535595 Msa0200050:CDS
CATTATATAAGCAGGATTGT+TGG 0.482949 2_1:+19535624 None:intergenic
CATCATCGACGGTCTCACTA+AGG 0.485114 2_1:-19535540 Msa0200050:CDS
CAAAAGTGAATGTTCAAAGA+AGG 0.486529 2_1:-19535216 Msa0200050:CDS
CGAGTAGGGATCCGAGAAAC+CGG 0.493083 2_1:+19535882 None:intergenic
CTGAGATTGGACTTGGTTGT+CGG 0.498616 2_1:+19534000 None:intergenic
TTGTCCCCTATTAAGAATCC+CGG 0.498971 2_1:-19535658 Msa0200050:CDS
TTTAGAAACATCATTGGAAG+AGG 0.499066 2_1:+19534433 None:intergenic
GATACAAAATGTGGACAAAA+GGG 0.500320 2_1:-19533406 Msa0200050:CDS
GGTTAAAGATCTTAGAGATA+AGG 0.502958 2_1:-19535518 Msa0200050:CDS
GAATACTAATGATCTTTCGT+TGG 0.507943 2_1:-19534588 Msa0200050:CDS
ATTGATATTGCTACCAGATA+GGG 0.509200 2_1:+19536137 None:intergenic
ATCAGTACCATCTAAGCCAT+TGG 0.511226 2_1:-19535005 Msa0200050:CDS
TCTCATTGCCACATTGTGGT+TGG 0.512196 2_1:+19536163 None:intergenic
CTCTCATCTATTCAACCAGT+TGG 0.518033 2_1:-19533543 Msa0200050:CDS
AGATGTAGAAGTTATGTTGG+TGG 0.518076 2_1:-19533431 Msa0200050:CDS
AGTTCACAACCTCGCGAGAT+CGG 0.518518 2_1:+19533564 None:intergenic
CAGCTTTCAACCGAAAATGA+AGG 0.520086 2_1:+19533969 None:intergenic
TTAACAAGGAGCAGCAATCC+AGG 0.521935 2_1:-19534638 Msa0200050:CDS
AACCAGTTGGAAAGCCGAAA+GGG 0.522654 2_1:-19533530 Msa0200050:CDS
GGTGTTGGGGAATATGTTAG+AGG 0.527966 2_1:-19536012 Msa0200050:CDS
ACGATGAATCAAGGATAGAA+AGG 0.528440 2_1:-19533493 Msa0200050:CDS
AAAGGTCTACAGACAAGGAC+TGG 0.530185 2_1:-19534805 Msa0200050:CDS
AGGGAAGGTTTGAGTTCGAC+CGG 0.531361 2_1:-19535196 Msa0200050:CDS
GTGGACAAAAGGGTTTGAAA+TGG 0.534070 2_1:-19533396 Msa0200050:CDS
GCCTTTGCTTGGGAGGACCC+AGG 0.534090 2_1:+19535577 None:intergenic
CAGCTTCTTCAACATCAACT+AGG 0.535267 2_1:-19533718 Msa0200050:CDS
TCTTTGAACAAAAGCTGGAA+TGG 0.535359 2_1:-19535331 Msa0200050:CDS
TGTAGAAGTTATGTTGGTGG+AGG 0.536172 2_1:-19533428 Msa0200050:CDS
CAAAAGCTGGAATGGAGCAC+CGG 0.536269 2_1:-19535323 Msa0200050:CDS
GCAGCCTCCATTATATAAGC+AGG 0.537047 2_1:+19535616 None:intergenic
GATGAAGACGAAAATGGTGT+TGG 0.540397 2_1:-19536027 Msa0200050:CDS
AGCGCATTTGGCATCATCGA+CGG 0.545183 2_1:-19535551 Msa0200050:CDS
TCTGTTGCAATCCTAGATTG+AGG 0.548612 2_1:+19534405 None:intergenic
GTGAATGTTCAAAGAAGGGA+AGG 0.551174 2_1:-19535211 Msa0200050:CDS
AAATGGTGAAAAGAAAAGAC+TGG 0.552136 2_1:-19533379 Msa0200050:CDS
AAAAGTGAATGTTCAAAGAA+GGG 0.552284 2_1:-19535215 Msa0200050:CDS
TTGTTGGATGGAACAAAACC+GGG 0.552886 2_1:+19535640 None:intergenic
ATCATTGAAACATAAATCAT+GGG 0.554865 2_1:-19534297 Msa0200050:intron
TCAAGAGCGACGATGAATCA+AGG 0.555470 2_1:-19533502 Msa0200050:CDS
CTTACGTTGAAAGAATGAGA+TGG 0.555978 2_1:+19537234 None:intergenic
CAAGGTAGAAAAGTTACGAC+TGG 0.558357 2_1:-19534971 Msa0200050:CDS
TTGGTAGATCATCAACTACA+TGG 0.558692 2_1:-19533652 Msa0200050:CDS
ATTCAATCTCAAGAAATCCA+TGG 0.560466 2_1:-19533797 Msa0200050:CDS
TTCAATGGTTGATGAGCTTG+TGG 0.560544 2_1:-19533306 Msa0200050:CDS
GGTGAAAAGAAAAGACTGGT+TGG 0.561563 2_1:-19533375 Msa0200050:CDS
GAAATCCAATCAACCACCTA+AGG 0.567150 2_1:-19535134 Msa0200050:CDS
TTCCCTCGGCCGATCTCGCG+AGG 0.570693 2_1:-19533573 Msa0200050:CDS
GCATCAAAGTCAGATTTACC+AGG 0.572115 2_1:-19536309 Msa0200050:intron
TAAAGATCTTAGAGATAAGG+TGG 0.573035 2_1:-19535515 Msa0200050:CDS
ACCGGTGGCAGAAATTTGAT+GGG 0.573900 2_1:-19535178 Msa0200050:CDS
CAACCAGTTGGAAAGCCGAA+AGG 0.575183 2_1:-19533531 Msa0200050:CDS
TAGCCAATATGGAAAGTGGT+TGG 0.575562 2_1:-19533270 Msa0200050:CDS
CCCAGGTTCAAGAATTCTTG+CGG 0.576295 2_1:+19535594 None:intergenic
AAGGTGGACTCTTCGCAGAA+AGG 0.576510 2_1:-19535499 Msa0200050:CDS
ATATAAGCAGGATTGTTGGA+TGG 0.580763 2_1:+19535628 None:intergenic
TGCTTGATACAGACAATACA+AGG 0.581399 2_1:-19534544 Msa0200050:CDS
TGAGTAATAAACAATATGGT+GGG 0.582248 2_1:-19534718 Msa0200050:CDS
TGAGTAGCCAATATGGAAAG+TGG 0.584195 2_1:-19533274 Msa0200050:CDS
TCCATTGTAAAATCTAAAGT+CGG 0.584358 2_1:-19534908 Msa0200050:CDS
ATAGGATACAATGTAATTGG+CGG 0.584996 2_1:-19534515 Msa0200050:CDS
TTACGTTGAAAGAATGAGAT+GGG 0.589537 2_1:+19537235 None:intergenic
ATGTTTGCAGGGTGATGAGA+TGG 0.589624 2_1:-19534042 Msa0200050:intron
GAATCTTCTTCTGCGTGTGT+AGG 0.589839 2_1:+19535283 None:intergenic
TGATGTTGAAGAAGCTGAGT+CGG 0.591186 2_1:+19533724 None:intergenic
GTGAGTAATAAACAATATGG+TGG 0.591690 2_1:-19534719 Msa0200050:CDS
ACCTGGGTCCTCCCAAGCAA+AGG 0.594584 2_1:-19535578 Msa0200050:CDS
ATCATCGACGGTCTCACTAA+GGG 0.595032 2_1:-19535539 Msa0200050:CDS
CCATTGGTTTCCAACTCGCA+AGG 0.595241 2_1:-19534989 Msa0200050:CDS
CAATCCTGCTTATATAATGG+AGG 0.595285 2_1:-19535620 Msa0200050:CDS
TCGAGGTCCAATCAAACAAG+TGG 0.595809 2_1:+19536352 None:intergenic
GTATTCTTTCCACCTTGTCG+AGG 0.598057 2_1:+19534605 None:intergenic
ACGGATGTTATCAGTGCAGA+AGG 0.599029 2_1:-19533930 Msa0200050:intron
CATTCACTACACCATTAACA+AGG 0.608076 2_1:-19534652 Msa0200050:CDS
CTGTTCTAAAAGGATACCTA+AGG 0.611780 2_1:+19534487 None:intergenic
CTGTGAATCCTCGATGAGCA+CGG 0.612501 2_1:-19533949 Msa0200050:CDS
TCTCATCAGAATCTACTCAA+AGG 0.615246 2_1:-19535393 Msa0200050:CDS
CCTTGCGAGTTGGAAACCAA+TGG 0.620891 2_1:+19534989 None:intergenic
ACTATGATAAAGAAGCAGAC+AGG 0.622027 2_1:-19533695 Msa0200050:CDS
TAGAAACTGAGAATCTTGAA+GGG 0.623762 2_1:+19535837 None:intergenic
GGACGGCATAGAAGCTCAAG+TGG 0.631619 2_1:-19534935 Msa0200050:CDS
AATTTCTCAAAGAAGAAGCA+AGG 0.634224 2_1:-19535416 Msa0200050:CDS
ACACTTCACAGCATTCGACT+CGG 0.634714 2_1:+19535366 None:intergenic
CTGGAGATTCCTCTTATGGA+CGG 0.637212 2_1:-19534952 Msa0200050:CDS
TAGGGATCCGAGAAACCGGA+AGG 0.638892 2_1:+19535886 None:intergenic
GACAGTTTAAACAGTAGCTG+TGG 0.639820 2_1:-19534356 Msa0200050:CDS
CAGTTGGAAAGCCGAAAGGG+AGG 0.641527 2_1:-19533527 Msa0200050:CDS
GAGCTCCTAATGTAGTTGCA+AGG 0.641567 2_1:-19535933 Msa0200050:CDS
AACTCTGCATCAGATTCAGT+AGG 0.641798 2_1:+19533749 None:intergenic
AAAGAAAAGGTCTACAGACA+AGG 0.643351 2_1:-19534810 Msa0200050:CDS
AATGCTGTGAAGTGTTTACA+GGG 0.647568 2_1:-19535358 Msa0200050:CDS
TGAAGACGAAAATGGTGTTG+GGG 0.648206 2_1:-19536025 Msa0200050:CDS
AACCTCGCGAGATCGGCCGA+GGG 0.650868 2_1:+19533571 None:intergenic
GATGTCTCATTGCCACATTG+TGG 0.650908 2_1:+19536159 None:intergenic
TGGTAGATCATCAACTACAT+GGG 0.652706 2_1:-19533651 Msa0200050:CDS
GAAGGTTTGAGTTCGACCGG+TGG 0.655900 2_1:-19535193 Msa0200050:CDS
AAAATGAAATTCTATACACC+AGG 0.659647 2_1:-19534850 Msa0200050:CDS
AAGAAAATCCAACCACAATG+TGG 0.662792 2_1:-19536171 Msa0200050:CDS
TGTCGGCAATTGAATGACAG+AGG 0.665750 2_1:+19534017 None:intergenic
TGATTCTGGAAGATTGGTCA+AGG 0.670057 2_1:+19534319 None:intergenic
AAGTTGAGGGAATTGACAAG+TGG 0.671342 2_1:-19534464 Msa0200050:CDS
GGTTCTGTGACACCTCGACA+AGG 0.671483 2_1:-19534617 Msa0200050:CDS
GGATCCGAGAAACCGGAAGG+AGG 0.677160 2_1:+19535889 None:intergenic
AAAACCGGGATTCTTAATAG+GGG 0.690424 2_1:+19535654 None:intergenic
TTGGTGGAGGATACAAAATG+TGG 0.699477 2_1:-19533415 Msa0200050:CDS
TCTGTGACACCTCGACAAGG+TGG 0.707322 2_1:-19534614 Msa0200050:CDS
GTTACAAGTGATGACACATG+TGG 0.725091 2_1:-19535961 Msa0200050:CDS
GATAACATCCGTGCTCATCG+AGG 0.725688 2_1:+19533941 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCTTAATTTCCTTTAAT+GGG - chr2_1:19533214-19533233 Msa0200050:CDS 15.0%
!!! TTTTCAATTTTTCACTTTAT+TGG - chr2_1:19533271-19533290 Msa0200050:CDS 15.0%
!!! TTATTTTTAGTCTTTTGATT+CGG - chr2_1:19533316-19533335 Msa0200050:CDS 15.0%
!!! TATTAATTTTCGAAAATTTC+AGG - chr2_1:19533843-19533862 Msa0200050:intron 15.0%
!! AATAAAAATACAATTGACAA+GGG + chr2_1:19534137-19534156 None:intergenic 15.0%
!!! TTAATTTCATCTTTTGTTAT+TGG - chr2_1:19534163-19534182 Msa0200050:intron 15.0%
!! ATTCTTCTTTGAATAATAAA+GGG - chr2_1:19535133-19535152 Msa0200050:CDS 15.0%
!! AGATAATAATCACTTAAATA+TGG + chr2_1:19536141-19536160 None:intergenic 15.0%
!!! AGTGATTATTCAATAATTTT+TGG + chr2_1:19536271-19536290 None:intergenic 15.0%
!!! ATAATCACTCTTTTATTAAT+TGG - chr2_1:19536282-19536301 Msa0200050:intron 15.0%
!!! TTTTACTGTATATATTTTTC+AGG - chr2_1:19536558-19536577 Msa0200050:intron 15.0%
!! TGATCAAATATTTAATTCTT+TGG - chr2_1:19537190-19537209 Msa0200050:intron 15.0%
!!! TTAATTGATTCTATTATTGA+TGG - chr2_1:19537426-19537445 Msa0200050:five_prime_UTR 15.0%
!!! TTTCTTTTTTCTCTTCAAAT+TGG - chr2_1:19533020-19533039 Msa0200050:three_prime_UTR 20.0%
!!! CTTTTCTTAATTTCCTTTAA+TGG - chr2_1:19533213-19533232 Msa0200050:CDS 20.0%
!!! AAATTTCTGTGTTTTTTGTT+TGG - chr2_1:19533342-19533361 Msa0200050:CDS 20.0%
!! ATTCTTCAAAATTCAAACAA+AGG + chr2_1:19533405-19533424 None:intergenic 20.0%
!!! AACATTGTATTTTACTCATT+AGG - chr2_1:19533426-19533445 Msa0200050:CDS 20.0%
!! TTCAGCTTAAATTTGTATTA+TGG - chr2_1:19533480-19533499 Msa0200050:CDS 20.0%
!! AATATGAGATTGTATTTACT+AGG - chr2_1:19533605-19533624 Msa0200050:CDS 20.0%
!! AGAATAATCATAATTAACCA+AGG + chr2_1:19533798-19533817 None:intergenic 20.0%
!! TATAGCAATATCAAATCAAA+GGG + chr2_1:19533825-19533844 None:intergenic 20.0%
!! ATATAGCAATATCAAATCAA+AGG + chr2_1:19533826-19533845 None:intergenic 20.0%
!!! CTCATTTGAAATTTAATAAC+TGG + chr2_1:19533901-19533920 None:intergenic 20.0%
!! CAATAAAAATACAATTGACA+AGG + chr2_1:19534138-19534157 None:intergenic 20.0%
!! AAAAATTATGTACAAGTAAC+AGG + chr2_1:19534305-19534324 None:intergenic 20.0%
!! GATTCTTCTTTGAATAATAA+AGG - chr2_1:19535132-19535151 Msa0200050:CDS 20.0%
!! TGTCATTATTATCAATTGAA+TGG + chr2_1:19535371-19535390 None:intergenic 20.0%
!!! ATAATTTTCCTAGAAAGAAA+AGG - chr2_1:19535574-19535593 Msa0200050:CDS 20.0%
!! ATCATTGAAACATAAATCAT+GGG - chr2_1:19536100-19536119 Msa0200050:intron 20.0%
!! AAAACCATAAACAAAAAGTT+AGG - chr2_1:19536208-19536227 Msa0200050:intron 20.0%
!!! TCAAAAAGTATAAATTTAGC+AGG + chr2_1:19536234-19536253 None:intergenic 20.0%
!!! GCTAAATTTATACTTTTTGA+TGG - chr2_1:19536234-19536253 Msa0200050:intron 20.0%
!! TTCTATGAATGAATAACAAT+AGG + chr2_1:19537307-19537326 None:intergenic 20.0%
! CAAGACAAAAACTTAAGTTA+AGG + chr2_1:19533056-19533075 None:intergenic 25.0%
! ATTGAAAACGAAATCTGAAA+AGG + chr2_1:19533259-19533278 None:intergenic 25.0%
! TAACACAAATGATAACAATG+TGG + chr2_1:19533299-19533318 None:intergenic 25.0%
!!! TTGATATGAAGTGGATTTTA+AGG - chr2_1:19533679-19533698 Msa0200050:CDS 25.0%
!! TTTCAGAGATGTTGAAATTT+TGG - chr2_1:19533747-19533766 Msa0200050:CDS 25.0%
!!! AATTTTCGAAAATTTCAGGT+AGG - chr2_1:19533847-19533866 Msa0200050:intron 25.0%
! TCTTTCTTGATTCATCTTTA+AGG - chr2_1:19533955-19533974 Msa0200050:CDS 25.0%
! ATTACATGTTTAATTCTTCC+AGG - chr2_1:19534345-19534364 Msa0200050:CDS 25.0%
!!! TCTCTTTGAAACTTTTCAAT+TGG + chr2_1:19534667-19534686 None:intergenic 25.0%
! AAAAGTGAATGTTCAAAGAA+GGG - chr2_1:19535182-19535201 Msa0200050:CDS 25.0%
!! TCCATTGTAAAATCTAAAGT+CGG - chr2_1:19535489-19535508 Msa0200050:CDS 25.0%
!! TAGAATTTCATTTTCGCTAT+CGG + chr2_1:19535541-19535560 None:intergenic 25.0%
! AAAATGAAATTCTATACACC+AGG - chr2_1:19535547-19535566 Msa0200050:CDS 25.0%
! CTAGTGAGTAATAAACAATA+TGG - chr2_1:19535675-19535694 Msa0200050:CDS 25.0%
! TGAGTAATAAACAATATGGT+GGG - chr2_1:19535679-19535698 Msa0200050:CDS 25.0%
!! GTTAACTTTAGAAACATCAT+TGG + chr2_1:19535973-19535992 None:intergenic 25.0%
! TTATGTTTCAATGATGATTC+TGG + chr2_1:19536095-19536114 None:intergenic 25.0%
! CATCATTGAAACATAAATCA+TGG - chr2_1:19536099-19536118 Msa0200050:intron 25.0%
! GTATAATGTCATCAGTTTAA+TGG - chr2_1:19536183-19536202 Msa0200050:CDS 25.0%
!! ATCACTCTTTTATTAATTGG+TGG - chr2_1:19536285-19536304 Msa0200050:intron 25.0%
! TGAGTTAATGACTTACTTAA+TGG + chr2_1:19536332-19536351 None:intergenic 25.0%
! CTTAAAAAGTTACTGTTGTT+TGG - chr2_1:19536499-19536518 Msa0200050:intron 25.0%
! TTAATTTAATGACACATGAG+TGG - chr2_1:19536529-19536548 Msa0200050:intron 25.0%
!!! TCCATGGATTTAATTTTTCA+AGG - chr2_1:19536616-19536635 Msa0200050:intron 25.0%
! TCCTTGAAAAATTAAATCCA+TGG + chr2_1:19536620-19536639 None:intergenic 25.0%
!! ACATTTTCTATGATGAAGTT+TGG - chr2_1:19536726-19536745 Msa0200050:intron 25.0%
! CAATGTAGAGTTAATGTATA+TGG - chr2_1:19536797-19536816 Msa0200050:intron 25.0%
!!! AAGGAAATTTTGAGTTTGAA+AGG - chr2_1:19537059-19537078 Msa0200050:intron 25.0%
!!! AGGAAATTTTGAGTTTGAAA+GGG - chr2_1:19537060-19537079 Msa0200050:intron 25.0%
! TGTTATTCATTCATAGAAGT+TGG - chr2_1:19537309-19537328 Msa0200050:five_prime_UTR 25.0%
TTACGTTGAAAGAATGAGAT+GGG + chr2_1:19533165-19533184 None:intergenic 30.0%
AAAAGGAAAGAACCCATTAA+AGG + chr2_1:19533229-19533248 None:intergenic 30.0%
!!! TTTAATGGGTTCTTTCCTTT+TGG - chr2_1:19533228-19533247 Msa0200050:CDS 30.0%
AGAAGTAATGATCGTGTATA+AGG - chr2_1:19533368-19533387 Msa0200050:CDS 30.0%
GTACATGATTAGTGAATTAG+AGG - chr2_1:19533517-19533536 Msa0200050:CDS 30.0%
! TTGAGAATTTGCCATTGATT+TGG - chr2_1:19533542-19533561 Msa0200050:CDS 30.0%
CCATATACATTCCAAATCAA+TGG + chr2_1:19533556-19533575 None:intergenic 30.0%
!! CCATTGATTTGGAATGTATA+TGG - chr2_1:19533553-19533572 Msa0200050:CDS 30.0%
! TGATTTGGAATGTATATGGT+TGG - chr2_1:19533557-19533576 Msa0200050:CDS 30.0%
TTGAGTTTGACTATGTTATC+TGG - chr2_1:19533633-19533652 Msa0200050:CDS 30.0%
! AAAAATCTCCTTTGAGAGAA+TGG + chr2_1:19533660-19533679 None:intergenic 30.0%
!!! GGAGATTTTTTGATATGAAG+TGG - chr2_1:19533670-19533689 Msa0200050:CDS 30.0%
!! ATATGAAGTGGATTTTAAGG+TGG - chr2_1:19533682-19533701 Msa0200050:CDS 30.0%
GAAAAAGAAGGGACTAAAAA+TGG - chr2_1:19534010-19534029 Msa0200050:CDS 30.0%
!!! GTTTTTTCCACTTGTTTGAT+TGG - chr2_1:19534038-19534057 Msa0200050:intron 30.0%
ATTGATATTGCTACCAGATA+GGG + chr2_1:19534263-19534282 None:intergenic 30.0%
TAGAAACTGAGAATCTTGAA+GGG + chr2_1:19534563-19534582 None:intergenic 30.0%
ATAGAAACTGAGAATCTTGA+AGG + chr2_1:19534564-19534583 None:intergenic 30.0%
GATTCTCAGTTTCTATATTC+TGG - chr2_1:19534568-19534587 Msa0200050:CDS 30.0%
! GTTTCTATATTCTGGAAAGT+TGG - chr2_1:19534576-19534595 Msa0200050:CDS 30.0%
! AAAGTTGGTTGAAAAAGTTG+AGG - chr2_1:19534591-19534610 Msa0200050:CDS 30.0%
! AAGTTGGTTGAAAAAGTTGA+GGG - chr2_1:19534592-19534611 Msa0200050:CDS 30.0%
AAAAGTTTATGGTGTGTAAC+AGG + chr2_1:19534721-19534740 None:intergenic 30.0%
TAATAGGGGACAAAAGTTTA+TGG + chr2_1:19534732-19534751 None:intergenic 30.0%
CATTATATAAGCAGGATTGT+TGG + chr2_1:19534776-19534795 None:intergenic 30.0%
CAACAATCCTGCTTATATAA+TGG - chr2_1:19534774-19534793 Msa0200050:CDS 30.0%
GGTTAAAGATCTTAGAGATA+AGG - chr2_1:19534879-19534898 Msa0200050:CDS 30.0%
TAAAGATCTTAGAGATAAGG+TGG - chr2_1:19534882-19534901 Msa0200050:CDS 30.0%
AATTTCTCAAAGAAGAAGCA+AGG - chr2_1:19534981-19535000 Msa0200050:CDS 30.0%
!! TTTGAACATTCACTTTTGCT+TGG + chr2_1:19535179-19535198 None:intergenic 30.0%
CAAAAGTGAATGTTCAAAGA+AGG - chr2_1:19535181-19535200 Msa0200050:CDS 30.0%
ATGCTCAGAAAAATTTGCAT+AGG - chr2_1:19535289-19535308 Msa0200050:CDS 30.0%
AATTTGCATAGGAAATCTTC+TGG - chr2_1:19535300-19535319 Msa0200050:CDS 30.0%
TGAGAACATTAGAAGAATTC+TGG + chr2_1:19535326-19535345 None:intergenic 30.0%
AGAATTCTTCTAATGTTCTC+AGG - chr2_1:19535325-19535344 Msa0200050:CDS 30.0%
! TCCGACTTTAGATTTTACAA+TGG + chr2_1:19535493-19535512 None:intergenic 30.0%
TCTAGGAAAATTATTTGTCC+TGG + chr2_1:19535568-19535587 None:intergenic 30.0%
GTGAGTAATAAACAATATGG+TGG - chr2_1:19535678-19535697 Msa0200050:CDS 30.0%
AGAAGTGAAAAAGAAAGACA+TGG - chr2_1:19535707-19535726 Msa0200050:CDS 30.0%
GAATACTAATGATCTTTCGT+TGG - chr2_1:19535809-19535828 Msa0200050:CDS 30.0%
CCAATTACATTGTATCCTAT+TGG + chr2_1:19535882-19535901 None:intergenic 30.0%
CCAATAGGATACAATGTAAT+TGG - chr2_1:19535879-19535898 Msa0200050:CDS 30.0%
ATAGGATACAATGTAATTGG+CGG - chr2_1:19535882-19535901 Msa0200050:CDS 30.0%
TTTAGAAACATCATTGGAAG+AGG + chr2_1:19535967-19535986 None:intergenic 30.0%
! TCTAAAGTTAACCTCAATCT+AGG - chr2_1:19535981-19536000 Msa0200050:CDS 30.0%
! AGATCAAGATATGTCGTTTA+CGG - chr2_1:19536019-19536038 Msa0200050:CDS 30.0%
ATTAACTCAAAGATGTTTGC+AGG - chr2_1:19536343-19536362 Msa0200050:CDS 30.0%
TTAACTCAAAGATGTTTGCA+GGG - chr2_1:19536344-19536363 Msa0200050:CDS 30.0%
ATTCAATCTCAAGAAATCCA+TGG - chr2_1:19536600-19536619 Msa0200050:intron 30.0%
! ATGTATATGGATTTTTCCCT+CGG - chr2_1:19536810-19536829 Msa0200050:intron 30.0%
TTGAGATGTAGAAGTTATGT+TGG - chr2_1:19536963-19536982 Msa0200050:intron 30.0%
GATACAAAATGTGGACAAAA+GGG - chr2_1:19536991-19537010 Msa0200050:intron 30.0%
AAATGGTGAAAAGAAAAGAC+TGG - chr2_1:19537018-19537037 Msa0200050:intron 30.0%
TTCATAGAAGTTGGATTATC+AGG - chr2_1:19537318-19537337 Msa0200050:five_prime_UTR 30.0%
!! GTTTAAAATTTTGCTGCTTC+TGG - chr2_1:19537380-19537399 Msa0200050:five_prime_UTR 30.0%
CTTACGTTGAAAGAATGAGA+TGG + chr2_1:19533166-19533185 None:intergenic 35.0%
TCTGAAAAGGAAGAACCAAA+AGG + chr2_1:19533246-19533265 None:intergenic 35.0%
!!! TGGATTTTAAGGTGGATCTT+AGG - chr2_1:19533690-19533709 Msa0200050:CDS 35.0%
! TTTAAGGTGGATCTTAGGTT+TGG - chr2_1:19533695-19533714 Msa0200050:CDS 35.0%
GCGTAGATTGCATCAATTTA+TGG - chr2_1:19533769-19533788 Msa0200050:CDS 35.0%
!! TGAGTTCTGCTTTTGAAGAT+GGG - chr2_1:19533983-19534002 Msa0200050:CDS 35.0%
AAGATGGGAGTTGAAAAAGA+AGG - chr2_1:19533998-19534017 Msa0200050:CDS 35.0%
AGATGGGAGTTGAAAAAGAA+GGG - chr2_1:19533999-19534018 Msa0200050:CDS 35.0%
AAAGAAGGGACTAAAAATGG+AGG - chr2_1:19534013-19534032 Msa0200050:CDS 35.0%
TAATTTCTTACGCGATTTCG+AGG + chr2_1:19534065-19534084 None:intergenic 35.0%
!! ATATGCAGAGTCTTTGAAAC+AGG - chr2_1:19534202-19534221 Msa0200050:intron 35.0%
AAGAAAATCCAACCACAATG+TGG - chr2_1:19534226-19534245 Msa0200050:intron 35.0%
GATTGATATTGCTACCAGAT+AGG + chr2_1:19534264-19534283 None:intergenic 35.0%
ATGAAGACGAAAATGGTGTT+GGG - chr2_1:19534371-19534390 Msa0200050:CDS 35.0%
ATAAGCCTTGCAACTACATT+AGG + chr2_1:19534472-19534491 None:intergenic 35.0%
TAATGTAGTTGCAAGGCTTA+TGG - chr2_1:19534471-19534490 Msa0200050:CDS 35.0%
AATGTAGTTGCAAGGCTTAT+GGG - chr2_1:19534472-19534491 Msa0200050:CDS 35.0%
AGGGATCGTGTATCAAAAAA+TGG + chr2_1:19534544-19534563 None:intergenic 35.0%
! GGTCTAGTAATAACCTTTTG+AGG + chr2_1:19534646-19534665 None:intergenic 35.0%
!! AGAAGTATTGCCTCCAAAAT+CGG - chr2_1:19534684-19534703 Msa0200050:CDS 35.0%
AAAACCGGGATTCTTAATAG+GGG + chr2_1:19534746-19534765 None:intergenic 35.0%
CAAAACCGGGATTCTTAATA+GGG + chr2_1:19534747-19534766 None:intergenic 35.0%
ACAAAACCGGGATTCTTAAT+AGG + chr2_1:19534748-19534767 None:intergenic 35.0%
ATTGTTGGATGGAACAAAAC+CGG + chr2_1:19534761-19534780 None:intergenic 35.0%
ATATAAGCAGGATTGTTGGA+TGG + chr2_1:19534772-19534791 None:intergenic 35.0%
CAATCCTGCTTATATAATGG+AGG - chr2_1:19534777-19534796 Msa0200050:CDS 35.0%
TCTCATCAGAATCTACTCAA+AGG - chr2_1:19535004-19535023 Msa0200050:CDS 35.0%
! AATGCTGTGAAGTGTTTACA+GGG - chr2_1:19535039-19535058 Msa0200050:CDS 35.0%
GACAATCTTTGAACAAAAGC+TGG - chr2_1:19535061-19535080 Msa0200050:CDS 35.0%
TCTTTGAACAAAAGCTGGAA+TGG - chr2_1:19535066-19535085 Msa0200050:CDS 35.0%
! TTTTTCTGAGCATTTGCCTT+AGG + chr2_1:19535282-19535301 None:intergenic 35.0%
! TCTGTAGACCTTTTCTTTCT+AGG + chr2_1:19535585-19535604 None:intergenic 35.0%
AAAGAAAAGGTCTACAGACA+AGG - chr2_1:19535587-19535606 Msa0200050:CDS 35.0%
CATTCACTACACCATTAACA+AGG - chr2_1:19535745-19535764 Msa0200050:CDS 35.0%
TGCTTGATACAGACAATACA+AGG - chr2_1:19535853-19535872 Msa0200050:CDS 35.0%
!! CTGTTCTAAAAGGATACCTA+AGG + chr2_1:19535913-19535932 None:intergenic 35.0%
!!! TCCTTTTAGAACAGAAGTTG+AGG - chr2_1:19535919-19535938 Msa0200050:CDS 35.0%
!!! CCTTTTAGAACAGAAGTTGA+GGG - chr2_1:19535920-19535939 Msa0200050:CDS 35.0%
! CAATGATGATTCTGGAAGAT+TGG + chr2_1:19536087-19536106 None:intergenic 35.0%
!! CAGGCCTAACTTTTTGTTTA+TGG + chr2_1:19536215-19536234 None:intergenic 35.0%
! AGTTCTTGAGCCTTCATTTT+CGG - chr2_1:19536418-19536437 Msa0200050:exon 35.0%
ACTATGATAAAGAAGCAGAC+AGG - chr2_1:19536702-19536721 Msa0200050:intron 35.0%
TTGGTAGATCATCAACTACA+TGG - chr2_1:19536745-19536764 Msa0200050:intron 35.0%
TGGTAGATCATCAACTACAT+GGG - chr2_1:19536746-19536765 Msa0200050:intron 35.0%
ACGATGAATCAAGGATAGAA+AGG - chr2_1:19536904-19536923 Msa0200050:intron 35.0%
TGATTGTGTGAGTGAATGTA+TGG - chr2_1:19536938-19536957 Msa0200050:intron 35.0%
AGATGTAGAAGTTATGTTGG+TGG - chr2_1:19536966-19536985 Msa0200050:intron 35.0%
GGATACAAAATGTGGACAAA+AGG - chr2_1:19536990-19537009 Msa0200050:intron 35.0%
GTTGGCAAAAGATGTGTATA+AGG - chr2_1:19537040-19537059 Msa0200050:intron 35.0%
AAGGATATGAGTAGCCAATA+TGG - chr2_1:19537116-19537135 Msa0200050:intron 35.0%
AATCCAACCACTTTCCATAT+TGG + chr2_1:19537133-19537152 None:intergenic 35.0%
!! GAGGTTGATGCTTATGAATT+TGG - chr2_1:19537155-19537174 Msa0200050:intron 35.0%
TATCTGGTCCATTCTCTCAA+AGG - chr2_1:19533649-19533668 Msa0200050:CDS 40.0%
GGTTCAGTAGTACTAGTATC+TGG - chr2_1:19533716-19533735 Msa0200050:CDS 40.0%
GCATCAATTTATGGACACCT+TGG - chr2_1:19533778-19533797 Msa0200050:CDS 40.0%
!! CTGAGTTCTGCTTTTGAAGA+TGG - chr2_1:19533982-19534001 Msa0200050:CDS 40.0%
GCATCAAAGTCAGATTTACC+AGG - chr2_1:19534088-19534107 Msa0200050:intron 40.0%
AAGTCAGATTTACCAGGTAC+AGG - chr2_1:19534094-19534113 Msa0200050:intron 40.0%
AACACAAAATTGCCTGTACC+TGG + chr2_1:19534109-19534128 None:intergenic 40.0%
GATGAAGACGAAAATGGTGT+TGG - chr2_1:19534370-19534389 Msa0200050:CDS 40.0%
! TGAAGACGAAAATGGTGTTG+GGG - chr2_1:19534372-19534391 Msa0200050:CDS 40.0%
GTTACAAGTGATGACACATG+TGG - chr2_1:19534436-19534455 Msa0200050:CDS 40.0%
TTAGATTCTTTGCCTCCTTC+CGG - chr2_1:19534496-19534515 Msa0200050:CDS 40.0%
! TCAAAAAATGGCGTCGAGTA+GGG + chr2_1:19534532-19534551 None:intergenic 40.0%
! ATCAAAAAATGGCGTCGAGT+AGG + chr2_1:19534533-19534552 None:intergenic 40.0%
GGGATCTTCTAGCAATTTCA+TGG - chr2_1:19534612-19534631 Msa0200050:CDS 40.0%
!!! ATTGATCTTGCCGATTTTGG+AGG + chr2_1:19534697-19534716 None:intergenic 40.0%
!!! GGAATTGATCTTGCCGATTT+TGG + chr2_1:19534700-19534719 None:intergenic 40.0%
TTGTCCCCTATTAAGAATCC+CGG - chr2_1:19534739-19534758 Msa0200050:CDS 40.0%
TTGTTGGATGGAACAAAACC+GGG + chr2_1:19534760-19534779 None:intergenic 40.0%
ACTGAAGATGTCGCAATAAG+AGG + chr2_1:19534925-19534944 None:intergenic 40.0%
! CGACATCTTCAGTAGCTTTT+AGG - chr2_1:19534932-19534951 Msa0200050:CDS 40.0%
!!! CTTCAGTAGCTTTTAGGACT+CGG - chr2_1:19534938-19534957 Msa0200050:CDS 40.0%
!!! TTCAGTAGCTTTTAGGACTC+GGG - chr2_1:19534939-19534958 Msa0200050:CDS 40.0%
! GAATGCTGTGAAGTGTTTAC+AGG - chr2_1:19535038-19535057 Msa0200050:CDS 40.0%
GGAGACTTAACAGATGTTTC+CGG + chr2_1:19535096-19535115 None:intergenic 40.0%
GTGAATGTTCAAAGAAGGGA+AGG - chr2_1:19535186-19535205 Msa0200050:CDS 40.0%
! TCATGTCGAGATGCTCTTTT+TGG + chr2_1:19535245-19535264 None:intergenic 40.0%
GAAATCCAATCAACCACCTA+AGG - chr2_1:19535263-19535282 Msa0200050:CDS 40.0%
ATTTGCCTTAGGTGGTTGAT+TGG + chr2_1:19535271-19535290 None:intergenic 40.0%
ATCAGTACCATCTAAGCCAT+TGG - chr2_1:19535392-19535411 Msa0200050:CDS 40.0%
TTGGAAACCAATGGCTTAGA+TGG + chr2_1:19535402-19535421 None:intergenic 40.0%
! AACTTTTCTACCTTGCGAGT+TGG + chr2_1:19535421-19535440 None:intergenic 40.0%
CAAGGTAGAAAAGTTACGAC+TGG - chr2_1:19535426-19535445 Msa0200050:CDS 40.0%
GACAATACAAGGTCTCCAAT+AGG - chr2_1:19535864-19535883 Msa0200050:CDS 40.0%
! CCCTCAACTTCTGTTCTAAA+AGG + chr2_1:19535923-19535942 None:intergenic 40.0%
AAGTTGAGGGAATTGACAAG+TGG - chr2_1:19535933-19535952 Msa0200050:CDS 40.0%
TCTGTTGCAATCCTAGATTG+AGG + chr2_1:19535995-19536014 None:intergenic 40.0%
GACAGTTTAAACAGTAGCTG+TGG - chr2_1:19536041-19536060 Msa0200050:intron 40.0%
! TGATTCTGGAAGATTGGTCA+AGG + chr2_1:19536081-19536100 None:intergenic 40.0%
TCAAGAACTGAGATTGGACT+TGG + chr2_1:19536407-19536426 None:intergenic 40.0%
CAGCTTTCAACCGAAAATGA+AGG + chr2_1:19536431-19536450 None:intergenic 40.0%
AACTCTGCATCAGATTCAGT+AGG + chr2_1:19536651-19536670 None:intergenic 40.0%
TGATGTTGAAGAAGCTGAGT+CGG + chr2_1:19536676-19536695 None:intergenic 40.0%
CAGCTTCTTCAACATCAACT+AGG - chr2_1:19536679-19536698 Msa0200050:intron 40.0%
CTCTCATCTATTCAACCAGT+TGG - chr2_1:19536854-19536873 Msa0200050:intron 40.0%
! TGTAGAAGTTATGTTGGTGG+AGG - chr2_1:19536969-19536988 Msa0200050:intron 40.0%
TTGGTGGAGGATACAAAATG+TGG - chr2_1:19536982-19537001 Msa0200050:intron 40.0%
GTGGACAAAAGGGTTTGAAA+TGG - chr2_1:19537001-19537020 Msa0200050:intron 40.0%
GGTGAAAAGAAAAGACTGGT+TGG - chr2_1:19537022-19537041 Msa0200050:intron 40.0%
GAAAGGGATGAGAGATTCAA+TGG - chr2_1:19537076-19537095 Msa0200050:intron 40.0%
!! TTCAATGGTTGATGAGCTTG+TGG - chr2_1:19537091-19537110 Msa0200050:intron 40.0%
TGAGTAGCCAATATGGAAAG+TGG - chr2_1:19537123-19537142 Msa0200050:intron 40.0%
TAGCCAATATGGAAAGTGGT+TGG - chr2_1:19537127-19537146 Msa0200050:intron 40.0%
TGGAAAGTGGTTGGATTATG+AGG - chr2_1:19537136-19537155 Msa0200050:intron 40.0%
TCGAGGTCCAATCAAACAAG+TGG + chr2_1:19534048-19534067 None:intergenic 45.0%
TCTCATTGCCACATTGTGGT+TGG + chr2_1:19534237-19534256 None:intergenic 45.0%
GATGTCTCATTGCCACATTG+TGG + chr2_1:19534241-19534260 None:intergenic 45.0%
! CATTTTCGTCTTCATCGACC+TGG + chr2_1:19534366-19534385 None:intergenic 45.0%
CAGGTCGATGAAGACGAAAA+TGG - chr2_1:19534364-19534383 Msa0200050:CDS 45.0%
! GGTGTTGGGGAATATGTTAG+AGG - chr2_1:19534385-19534404 Msa0200050:CDS 45.0%
GAGCTCCTAATGTAGTTGCA+AGG - chr2_1:19534464-19534483 Msa0200050:CDS 45.0%
CATGGAGTCAAAGCCTCAAA+AGG - chr2_1:19534630-19534649 Msa0200050:CDS 45.0%
GCAGCCTCCATTATATAAGC+AGG + chr2_1:19534784-19534803 None:intergenic 45.0%
CCCAGGTTCAAGAATTCTTG+CGG + chr2_1:19534806-19534825 None:intergenic 45.0%
CCGCAAGAATTCTTGAACCT+GGG - chr2_1:19534803-19534822 Msa0200050:CDS 45.0%
! ATGCGCTTTAGCCTTTGCTT+GGG + chr2_1:19534833-19534852 None:intergenic 45.0%
! AATGCGCTTTAGCCTTTGCT+TGG + chr2_1:19534834-19534853 None:intergenic 45.0%
AGCAAAGGCTAAAGCGCATT+TGG - chr2_1:19534834-19534853 Msa0200050:CDS 45.0%
ATCATCGACGGTCTCACTAA+GGG - chr2_1:19534858-19534877 Msa0200050:CDS 45.0%
ACACTTCACAGCATTCGACT+CGG + chr2_1:19535034-19535053 None:intergenic 45.0%
GAATCTTCTTCTGCGTGTGT+AGG + chr2_1:19535117-19535136 None:intergenic 45.0%
ACCGGTGGCAGAAATTTGAT+GGG - chr2_1:19535219-19535238 Msa0200050:CDS 45.0%
TTCTGAGCATTTGCCTTAGG+TGG + chr2_1:19535279-19535298 None:intergenic 45.0%
ACGACTGGAGATTCCTCTTA+TGG - chr2_1:19535441-19535460 Msa0200050:CDS 45.0%
CTGGAGATTCCTCTTATGGA+CGG - chr2_1:19535445-19535464 Msa0200050:CDS 45.0%
ATCGAAAAAGTCAGCTGTGG+AGG - chr2_1:19535512-19535531 Msa0200050:CDS 45.0%
AAAGGTCTACAGACAAGGAC+TGG - chr2_1:19535592-19535611 Msa0200050:CDS 45.0%
! CTCACTAGATTTGACTTCGC+TGG + chr2_1:19535663-19535682 None:intergenic 45.0%
GGATTGCTGCTCCTTGTTAA+TGG + chr2_1:19535759-19535778 None:intergenic 45.0%
TTAACAAGGAGCAGCAATCC+AGG - chr2_1:19535759-19535778 Msa0200050:CDS 45.0%
GTATTCTTTCCACCTTGTCG+AGG + chr2_1:19535795-19535814 None:intergenic 45.0%
ATGTTTGCAGGGTGATGAGA+TGG - chr2_1:19536355-19536374 Msa0200050:CDS 45.0%
TGTCGGCAATTGAATGACAG+AGG + chr2_1:19536383-19536402 None:intergenic 45.0%
! CTGAGATTGGACTTGGTTGT+CGG + chr2_1:19536400-19536419 None:intergenic 45.0%
GAAGGCTCAAGAACTGAGAT+TGG + chr2_1:19536413-19536432 None:intergenic 45.0%
ACGGATGTTATCAGTGCAGA+AGG - chr2_1:19536467-19536486 Msa0200050:intron 45.0%
AACCAGTTGGAAAGCCGAAA+GGG - chr2_1:19536867-19536886 Msa0200050:intron 45.0%
TCAAGAGCGACGATGAATCA+AGG - chr2_1:19536895-19536914 Msa0200050:intron 45.0%
!! GGTTGATGAGCTTGTGGATA+AGG - chr2_1:19537097-19537116 Msa0200050:intron 45.0%
GGCAATGAGACATCCCTATC+TGG - chr2_1:19534247-19534266 Msa0200050:intron 50.0%
TTTGCCTCCTTCCGGTTTCT+CGG - chr2_1:19534504-19534523 Msa0200050:CDS 50.0%
GCCGCAAGAATTCTTGAACC+TGG - chr2_1:19534802-19534821 Msa0200050:CDS 50.0%
AGCGCATTTGGCATCATCGA+CGG - chr2_1:19534846-19534865 Msa0200050:CDS 50.0%
CATCATCGACGGTCTCACTA+AGG - chr2_1:19534857-19534876 Msa0200050:CDS 50.0%
! AAGGTGGACTCTTCGCAGAA+AGG - chr2_1:19534898-19534917 Msa0200050:CDS 50.0%
CAAAAGCTGGAATGGAGCAC+CGG - chr2_1:19535074-19535093 Msa0200050:CDS 50.0%
! AGGGAAGGTTTGAGTTCGAC+CGG - chr2_1:19535201-19535220 Msa0200050:CDS 50.0%
GACCGGTGGCAGAAATTTGA+TGG - chr2_1:19535218-19535237 Msa0200050:CDS 50.0%
GCCCATCAAATTTCTGCCAC+CGG + chr2_1:19535223-19535242 None:intergenic 50.0%
! CCTTGCGAGTTGGAAACCAA+TGG + chr2_1:19535411-19535430 None:intergenic 50.0%
!! CCATTGGTTTCCAACTCGCA+AGG - chr2_1:19535408-19535427 Msa0200050:CDS 50.0%
GCTTCTATGCCGTCCATAAG+AGG + chr2_1:19535457-19535476 None:intergenic 50.0%
CGGATCGAAAAAGTCAGCTG+TGG - chr2_1:19535509-19535528 Msa0200050:CDS 50.0%
CTGTGAATCCTCGATGAGCA+CGG - chr2_1:19536448-19536467 Msa0200050:intron 50.0%
GATAACATCCGTGCTCATCG+AGG + chr2_1:19536459-19536478 None:intergenic 50.0%
AGTTCACAACCTCGCGAGAT+CGG + chr2_1:19536836-19536855 None:intergenic 50.0%
CAACCAGTTGGAAAGCCGAA+AGG - chr2_1:19536866-19536885 Msa0200050:intron 50.0%
CGCTCTTGAAACCTCCCTTT+CGG + chr2_1:19536884-19536903 None:intergenic 50.0%
TAGGGATCCGAGAAACCGGA+AGG + chr2_1:19534514-19534533 None:intergenic 55.0%
CGAGTAGGGATCCGAGAAAC+CGG + chr2_1:19534518-19534537 None:intergenic 55.0%
! CGCTTTAGCCTTTGCTTGGG+AGG + chr2_1:19534830-19534849 None:intergenic 55.0%
! GAAGGTTTGAGTTCGACCGG+TGG - chr2_1:19535204-19535223 Msa0200050:CDS 55.0%
GGACGGCATAGAAGCTCAAG+TGG - chr2_1:19535462-19535481 Msa0200050:CDS 55.0%
! TGTCGAGGTGTCACAGAACC+TGG + chr2_1:19535780-19535799 None:intergenic 55.0%
GGTTCTGTGACACCTCGACA+AGG - chr2_1:19535780-19535799 Msa0200050:CDS 55.0%
TCTGTGACACCTCGACAAGG+TGG - chr2_1:19535783-19535802 Msa0200050:CDS 55.0%
GTAATTGGCGGCGATGCCTT+AGG - chr2_1:19535894-19535913 Msa0200050:CDS 55.0%
CTCCCTTTCGGCTTTCCAAC+TGG + chr2_1:19536872-19536891 None:intergenic 55.0%
CAGTTGGAAAGCCGAAAGGG+AGG - chr2_1:19536870-19536889 Msa0200050:intron 55.0%
GGATCCGAGAAACCGGAAGG+AGG + chr2_1:19534511-19534530 None:intergenic 60.0%
ACCTGGGTCCTCCCAAGCAA+AGG - chr2_1:19534819-19534838 Msa0200050:CDS 60.0%
GCCTTTGCTTGGGAGGACCC+AGG + chr2_1:19534823-19534842 None:intergenic 65.0%
AACCTCGCGAGATCGGCCGA+GGG + chr2_1:19536829-19536848 None:intergenic 65.0%
TTCCCTCGGCCGATCTCGCG+AGG - chr2_1:19536824-19536843 Msa0200050:intron 70.0%
CAACCTCGCGAGATCGGCCG+AGG + chr2_1:19536830-19536849 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 19532970 19537449 19532970 ID=Msa0200050;Name=Msa0200050
chr2_1 mRNA 19532970 19537449 19532970 ID=Msa0200050-mRNA-1;Parent=Msa0200050;Name=Msa0200050-mRNA-1;_AED=0.09;_eAED=0.09;_QI=214|1|1|1|0.66|0.57|7|202|904
chr2_1 exon 19532970 19533839 19532970 ID=Msa0200050-mRNA-1:exon:8170;Parent=Msa0200050-mRNA-1
chr2_1 exon 19533931 19534054 19533931 ID=Msa0200050-mRNA-1:exon:8169;Parent=Msa0200050-mRNA-1
chr2_1 exon 19534298 19536052 19534298 ID=Msa0200050-mRNA-1:exon:8168;Parent=Msa0200050-mRNA-1
chr2_1 exon 19536151 19536209 19536151 ID=Msa0200050-mRNA-1:exon:8167;Parent=Msa0200050-mRNA-1
chr2_1 exon 19536310 19536442 19536310 ID=Msa0200050-mRNA-1:exon:8166;Parent=Msa0200050-mRNA-1
chr2_1 exon 19537239 19537400 19537239 ID=Msa0200050-mRNA-1:exon:8165;Parent=Msa0200050-mRNA-1
chr2_1 exon 19537422 19537449 19537422 ID=Msa0200050-mRNA-1:exon:8164;Parent=Msa0200050-mRNA-1
chr2_1 five_prime_UTR 19537422 19537449 19537422 ID=Msa0200050-mRNA-1:five_prime_utr;Parent=Msa0200050-mRNA-1
chr2_1 five_prime_UTR 19537239 19537400 19537239 ID=Msa0200050-mRNA-1:five_prime_utr;Parent=Msa0200050-mRNA-1
chr2_1 five_prime_UTR 19536419 19536442 19536419 ID=Msa0200050-mRNA-1:five_prime_utr;Parent=Msa0200050-mRNA-1
chr2_1 CDS 19536310 19536418 19536310 ID=Msa0200050-mRNA-1:cds;Parent=Msa0200050-mRNA-1
chr2_1 CDS 19536151 19536209 19536151 ID=Msa0200050-mRNA-1:cds;Parent=Msa0200050-mRNA-1
chr2_1 CDS 19534298 19536052 19534298 ID=Msa0200050-mRNA-1:cds;Parent=Msa0200050-mRNA-1
chr2_1 CDS 19533931 19534054 19533931 ID=Msa0200050-mRNA-1:cds;Parent=Msa0200050-mRNA-1
chr2_1 CDS 19533172 19533839 19533172 ID=Msa0200050-mRNA-1:cds;Parent=Msa0200050-mRNA-1
chr2_1 three_prime_UTR 19532970 19533171 19532970 ID=Msa0200050-mRNA-1:three_prime_utr;Parent=Msa0200050-mRNA-1
Gene Sequence

>Msa0200050

ATGGGAGTTGAAAAAGAAGGGACTAAAAATGGAGGTAGTTTTTTCCACTTGTTTGATTGGACCTCGAAATCGCGTAAGAAATTATTTGCATCAAAGTCAGATTTACCAGAGTCTTTGAAACAGGAAAGAAAATCCAACCACAATGTGGCAATGAGACATCCCTATCTGGTCGATGAAGACGAAAATGGTGTTGGGGAATATGTTAGAGGAAGCTGTGATCATAGTTATGCTTCATCTGTTACAAGTGATGACACATGTGGAACAAGAGCTCCTAATGTAGTTGCAAGGCTTATGGGATTAGATTCTTTGCCTCCTTCCGGTTTCTCGGATCCCTACTCGACGCCATTTTTTGATACACGATCCCTTCAAGATTCTCAGTTTCTATATTCTGGAAAGTTGGTTGAAAAAGTTGAGGGATCTTCTAGCAATTTCATGGAGTCAAAGCCTCAAAAGGTTATTACTAGACCAATTGAAAAGTTTCAAAGAGAAGTATTGCCTCCAAAATCGGCAAGATCAATTCCTGTTACACACCATAAACTTTTGTCCCCTATTAAGAATCCCGGTTTTGTTCCATCCAACAATCCTGCTTATATAATGGAGGCTGCCGCAAGAATTCTTGAACCTGGGTCCTCCCAAGCAAAGGCTAAAGCGCATTTGGCATCATCGACGGTCTCACTAAGGGTTAAAGATCTTAGAGATAAGGTGGACTCTTCGCAGAAAGGACCTCTTATTGCGACATCTTCAGTAGCTTTTAGGACTCGGGAGCTAAAAGAAAAAAGAGAAATTTCTCAAAGAAGAAGCAAGGTCTCATCAGAATCTACTCAAAGGTCAGCCGAGTCGAATGCTGTGAAGTGTTTACAGGGACAATCTTTGAACAAAAGCTGGAATGGAGCACCGGAAACATCTGTTAAGTCTCCTACACACGCAGAAGAAGATTCTTCTTTGAATAATAAAGGGAAGTCTGTTTCACTTGCAATCCAAGCAAAAGTGAATGTTCAAAGAAGGGAAGGTTTGAGTTCGACCGGTGGCAGAAATTTGATGGGCCAAAAAGAGCATCTCGACATGAAATCCAATCAACCACCTAAGGCAAATGCTCAGAAAAATTTGCATAGGAAATCTTCTGGCCAGAATTCTTCTAATGTTCTCAGGCAGAATAATCTGAAACAGAACCATTCAATTGATAATAATGACAAATCAGTACCATCTAAGCCATTGGTTTCCAACTCGCAAGGTAGAAAAGTTACGACTGGAGATTCCTCTTATGGACGGCATAGAAGCTCAAGTGGTAAATCCATTGTAAAATCTAAAGTCGGATCGAAAAAGTCAGCTGTGGAGGTAACCGATAGCGAAAATGAAATTCTATACACCAGGACAAATAATTTTCCTAGAAAGAAAAGGTCTACAGACAAGGACTGGAACGATAGAGTTGTTGATAATTTGTTCATTGACAAAACTCAGAAGCCAGCGAAGTCAAATCTAGTGAGTAATAAACAATATGGTGGGACTGAAGAAGTGAAAAAGAAAGACATGGATGTAGTTTCTTTCACATTCACTACACCATTAACAAGGAGCAGCAATCCAGGTTCTGTGACACCTCGACAAGGTGGAAAGAATACTAATGATCTTTCGTTGGATCAACGCATTAAAAGAGTGTTGCTTGATACAGACAATACAAGGTCTCCAATAGGATACAATGTAATTGGCGGCGATGCCTTAGGTATCCTTTTAGAACAGAAGTTGAGGGAATTGACAAGTGGAGTTGAAACCTCTTCCAATGATGTTTCTAAAGTTAACCTCAATCTAGGATTGCAACAGAAGAAAGATCAAGATATGTCGTTTACGGACAGTTTAAACAGTAGCTGTGGTTCTAACATATCATCCTTGACCAATCTTCCAGAATCATCATTGAAACATAAATCATGGGGTGATGAGATGGAACCTCTGTCATTCAATTGCCGACAACCAAGTCCAATCTCAGTTCTTGAGCCTTCATTTTCGGTTGAAAGCTGTGAATCCTCGATGAGCACGGATGTTATCAGTGCAGAAGGAAGCAAGATGTTTTCATCTATTCAATCTCAAGAAATCCATGGATTTAATTTTTCAAGGAAGTTCTATCCTACTGAATCTGATGCAGAGTTATCCGACTCAGCTTCTTCAACATCAACTAGGACTATGATAAAGAAGCAGACAGGTACATTTTCTATGATGAAGTTTGGTAGATCATCAACTACATGGGAGCTAGACTATGTGAAAGAGATATTGTGCAATGTAGAGTTAATGTATATGGATTTTTCCCTCGGCCGATCTCGCGAGGTTGTGAACTCTCATCTATTCAACCAGTTGGAAAGCCGAAAGGGAGGTTTCAAGAGCGACGATGAATCAAGGATAGAAAGGAAAGTTATATTTGATTGTGTGAGTGAATGTATGGATTTGAGATGTAGAAGTTATGTTGGTGGAGGATACAAAATGTGGACAAAAGGGTTTGAAATGGTGAAAAGAAAAGACTGGTTGGCAAAAGATGTGTATAAGGAAATTTTGAGTTTGAAAGGGATGAGAGATTCAATGGTTGATGAGCTTGTGGATAAGGATATGAGTAGCCAATATGGAAAGTGGTTGGATTATGAGGTTGATGCTTATGAATTTGGAGAAGAAGTTGTTGATCAAATATTTAATTCTTTGGTTGATGATGTTGTCTATGAAATGTTGCAATTTTAA

Protein sequence

>Msa0200050

MGVEKEGTKNGGSFFHLFDWTSKSRKKLFASKSDLPESLKQERKSNHNVAMRHPYLVDEDENGVGEYVRGSCDHSYASSVTSDDTCGTRAPNVVARLMGLDSLPPSGFSDPYSTPFFDTRSLQDSQFLYSGKLVEKVEGSSSNFMESKPQKVITRPIEKFQREVLPPKSARSIPVTHHKLLSPIKNPGFVPSNNPAYIMEAAARILEPGSSQAKAKAHLASSTVSLRVKDLRDKVDSSQKGPLIATSSVAFRTRELKEKREISQRRSKVSSESTQRSAESNAVKCLQGQSLNKSWNGAPETSVKSPTHAEEDSSLNNKGKSVSLAIQAKVNVQRREGLSSTGGRNLMGQKEHLDMKSNQPPKANAQKNLHRKSSGQNSSNVLRQNNLKQNHSIDNNDKSVPSKPLVSNSQGRKVTTGDSSYGRHRSSSGKSIVKSKVGSKKSAVEVTDSENEILYTRTNNFPRKKRSTDKDWNDRVVDNLFIDKTQKPAKSNLVSNKQYGGTEEVKKKDMDVVSFTFTTPLTRSSNPGSVTPRQGGKNTNDLSLDQRIKRVLLDTDNTRSPIGYNVIGGDALGILLEQKLRELTSGVETSSNDVSKVNLNLGLQQKKDQDMSFTDSLNSSCGSNISSLTNLPESSLKHKSWGDEMEPLSFNCRQPSPISVLEPSFSVESCESSMSTDVISAEGSKMFSSIQSQEIHGFNFSRKFYPTESDAELSDSASSTSTRTMIKKQTGTFSMMKFGRSSTTWELDYVKEILCNVELMYMDFSLGRSREVVNSHLFNQLESRKGGFKSDDESRIERKVIFDCVSECMDLRCRSYVGGGYKMWTKGFEMVKRKDWLAKDVYKEILSLKGMRDSMVDELVDKDMSSQYGKWLDYEVDAYEFGEEVVDQIFNSLVDDVVYEMLQF*