AlfalfaGEDB | MS.gene00055

M. sativa cultivar XinJiangDaYe / MS.gene00055

KEGG: K04123
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00055.t1	XP_013463070.1	95.5	488	22	0	1	488	1	488	4.50E-276	959.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00055.t1	Q9C5Y2	65.6	485	164	2	2	486	5	486	7.9e-189	661.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00055.t1	A0A072VG08	95.5	488	22	0	1	488	1	488	3.2e-276	959.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene00055	MS.gene059957	PPI
MS.gene00055	MS.gene39425	PPI
MS.gene00055	MS.gene27240	PPI
MS.gene00055	MS.gene008465	PPI
MS.gene00055	MS.gene41475	PPI
MS.gene00055	MS.gene41476	PPI
MS.gene00055	MS.gene066483	PPI
MS.gene00055	MS.gene052503	PPI
MS.gene00055	MS.gene41482	PPI
MS.gene00055	MS.gene41488	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00055.t1	MTR_2g031920	95.492	488	22	0	1	488	1	488	0.0	974
MS.gene00055.t1	MTR_2g031930	78.279	488	103	2	1	488	5	489	0.0	810
MS.gene00055.t1	MTR_2g031930	77.948	458	98	2	1	458	1	455	0.0	754
MS.gene00055.t1	MTR_5g014250	53.074	488	220	6	3	486	7	489	3.97e-179	511
MS.gene00055.t1	MTR_8g089800	48.262	489	251	2	1	488	3	490	2.29e-176	504
MS.gene00055.t1	MTR_5g014240	48.566	488	241	8	3	486	7	488	2.64e-157	456
MS.gene00055.t1	MTR_4g005230	44.262	488	259	7	5	488	7	485	3.49e-154	448
MS.gene00055.t1	MTR_8g012970	45.287	488	256	8	5	488	7	487	1.52e-153	446
MS.gene00055.t1	MTR_1g032950	44.672	488	248	5	5	488	6	475	9.50e-148	431
MS.gene00055.t1	MTR_0045s0060	35.746	456	280	6	33	486	32	476	1.22e-103	318

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00055.t1	AT2G32440	65.567	485	164	2	2	486	5	486	0.0	671
MS.gene00055.t1	AT2G32440	65.567	485	164	2	2	486	5	486	0.0	671
MS.gene00055.t1	AT1G05160	64.315	482	169	2	4	484	8	487	0.0	665
MS.gene00055.t1	AT1G05160	64.315	482	169	2	4	484	8	487	0.0	665
MS.gene00055.t1	AT3G19270	31.224	490	314	8	1	489	1	468	1.31e-79	256
MS.gene00055.t1	AT4G19230	33.049	469	291	10	14	480	9	456	3.50e-78	253
MS.gene00055.t1	AT3G19270	32.314	458	287	8	1	457	1	436	5.65e-78	251
MS.gene00055.t1	AT5G45340	33.933	445	272	10	35	478	30	453	1.55e-77	250
MS.gene00055.t1	AT5G45340	35.172	435	259	11	35	467	30	443	3.52e-77	249
MS.gene00055.t1	AT4G19230	32.403	466	293	9	14	478	9	453	4.40e-77	249

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Find 117 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCCTTCCACACAAAA+AGG	0.343509	2.1:+60103127	MS.gene00055:CDS
AAAGAGGCCATGAAAGAATC+TGG	0.346479	2.1:-60101300	None:intergenic
AAAGATGGATTATCTTTCTA+AGG	0.311964	2.1:+60103171	MS.gene00055:CDS
AAATATATTACTCATAATTG+AGG	0.545186	2.1:-60103909	None:intergenic
AAGAACAAGAGGAAATCTTA+AGG	0.476951	2.1:+60103104	MS.gene00055:CDS
AAGAATCTCACTGGAGATTT+TGG	0.122429	2.1:-60104225	None:intergenic
AAGAGGAAATCTTAAGGAAA+AGG	0.456848	2.1:+60103110	MS.gene00055:CDS
AAGAGGCCATGAAAGAATCT+GGG	0.581029	2.1:-60101299	None:intergenic
AAGCAATACTCTTTGCCACC+AGG	0.513222	2.1:+60101213	MS.gene00055:CDS
AAGGCCAATGGACAATTGCT+TGG	0.561657	2.1:+60104257	MS.gene00055:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTTGTGTGTGATTACAA+AGG	-	chr2.1:60101496-60101515	None:intergenic	30.0%
AAGAACAAGAGGAAATCTTA+AGG	+	chr2.1:60103104-60103123	MS.gene00055:CDS	30.0%
AAGAGGAAATCTTAAGGAAA+AGG	+	chr2.1:60103110-60103129	MS.gene00055:CDS	30.0%
AATGGCTTAGGATAAATTTC+TGG	-	chr2.1:60103652-60103671	None:intergenic	30.0%
ATGGCTTAGGATAAATTTCT+GGG	-	chr2.1:60103651-60103670	None:intergenic	30.0%
CAAATTCATGTGTGATAGTA+AGG	-	chr2.1:60103454-60103473	None:intergenic	30.0%
CAACAAAATATTGTGTGTGT+GGG	-	chr2.1:60103969-60103988	None:intergenic	30.0%
CAATCAACAGTTGAACTAAT+TGG	+	chr2.1:60102181-60102200	MS.gene00055:CDS	30.0%
CTTACTATCACACATGAATT+TGG	+	chr2.1:60103452-60103471	MS.gene00055:intron	30.0%
GGCTATATTTCAATCAATTG+TGG	+	chr2.1:60102751-60102770	MS.gene00055:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	60101105	60104305	60101105	ID=MS.gene00055
chr2.1	mRNA	60101105	60104305	60101105	ID=MS.gene00055.t1;Parent=MS.gene00055
chr2.1	exon	60101105	60101331	60101105	ID=MS.gene00055.t1.exon1;Parent=MS.gene00055.t1
chr2.1	CDS	60101105	60101331	60101105	ID=cds.MS.gene00055.t1;Parent=MS.gene00055.t1
chr2.1	exon	60102060	60102537	60102060	ID=MS.gene00055.t1.exon2;Parent=MS.gene00055.t1
chr2.1	CDS	60102060	60102537	60102060	ID=cds.MS.gene00055.t1;Parent=MS.gene00055.t1
chr2.1	exon	60102734	60103003	60102734	ID=MS.gene00055.t1.exon3;Parent=MS.gene00055.t1
chr2.1	CDS	60102734	60103003	60102734	ID=cds.MS.gene00055.t1;Parent=MS.gene00055.t1
chr2.1	exon	60103103	60103192	60103103	ID=MS.gene00055.t1.exon4;Parent=MS.gene00055.t1
chr2.1	CDS	60103103	60103192	60103103	ID=cds.MS.gene00055.t1;Parent=MS.gene00055.t1
chr2.1	exon	60103291	60103369	60103291	ID=MS.gene00055.t1.exon5;Parent=MS.gene00055.t1
chr2.1	CDS	60103291	60103369	60103291	ID=cds.MS.gene00055.t1;Parent=MS.gene00055.t1
chr2.1	exon	60103590	60103699	60103590	ID=MS.gene00055.t1.exon6;Parent=MS.gene00055.t1
chr2.1	CDS	60103590	60103699	60103590	ID=cds.MS.gene00055.t1;Parent=MS.gene00055.t1
chr2.1	exon	60103802	60103920	60103802	ID=MS.gene00055.t1.exon7;Parent=MS.gene00055.t1
chr2.1	CDS	60103802	60103920	60103802	ID=cds.MS.gene00055.t1;Parent=MS.gene00055.t1
chr2.1	exon	60104209	60104305	60104209	ID=MS.gene00055.t1.exon8;Parent=MS.gene00055.t1
chr2.1	CDS	60104209	60104305	60104209	ID=cds.MS.gene00055.t1;Parent=MS.gene00055.t1

Gene Sequence

>MS.gene00055

ATGGGTTCCATATGGGTGGTCTTTGGTGGCGTTGTTGGTGTTCTTTTTATCCTAAGAACCCTTCTCAAGAATGTGAATTGGTTGCTCTATGAAGCAAAACTTGGTTCTAAGCAATACTCTTTGCCACCAGGTGACATGGGATGGCCCGTAATCGGTAACATGTGGTCTTTCCTTAGGGCATTCAAGTCCAATGACCCAGATTCTTTCATGGCCTCTTTTGTCAAAAGGTATAATTAGACCATCCTCTTTAATTGTATAATTTTTCATCACTTAACAAGCTACTTTATTGTAATTTTTTATGTAAATTACAAAGTCCCCTTTAGCTTATTGTATATTTCACTTGTTATTTTCATAAAAAAAAAAATTTATATTTCACTTGTAGCATCTTCCTTTGTAATCACACACAAGTTTTCTTCTAAAATCTCTCATAGAAGAAATCATTTTGTTAATAGATTGAATTTAACTATTTTTTTTGTCAAGTTATTTTTATTTTTATTTAGGATTTGCATGCAAGGCTTTTTTTTTCATACTTATTTTCTCAACATATAGGCCAATTTGACGAGTCGACATCATTGTAAGCCCTATGTTAATTAGGATGGTCCAGTGCATAATAAAACAAAATTAAATTGGAATTTAGTTGTATTAAATAATTATTTCATTCTAGTCATGCTTGGAATATTGCAAACAATTGTTGCCAAACGTGTGACATGCAGAGGTTCTCAATATTGTTTCCATGCAGAGTGGCAGTTCTATTTGGTTGCGTGTTAATAACTTCCAAACTCATTGAAATGAAAACCAATTAAATTGAGTTTGTTTTATTTTTAAAAAATAACACAACCACATATAAATGTTAATATTTATTTATTTTTGCAAGAGTTTAAACATTTTAATTATTCAAATCAATAATTATGTGGTTTCCATGAATGATGCAAACCACTAACATTTTATGGTACAGGTTTGGAAAAACAGGCATATACAAGGTATTCATGTTTGGAAACCCTAGCGTAGTGGTGACAACACCTGAAGCATGCAAAAGAGTTTTAACAGATGATGACAAATTTGTACCTGGTTGGCCACAATCAACAGTTGAACTAATTGGAGAAAAATCATTTATTAAAATGCCTTTTGAAGAACACAAACGACTTAGGCGTTTAACATCATCTTCAATCAATGGCTATGAAGCACTTTCAGTGTATTTAAAAAAAATTGAAGAAGTTGTGATTAGTTCATTGGAGAAATGGACTCATATGGGTGAAATTGAGTTTTTAACTCAAATGAGAAAACTTACTTTTAAAATTATTATCCATATTTTCCTTGGTTCAGAGAGTGATCATGTTATGGAGGCTTTGGAAAGAGAATACACAGGTCTTAACCTTGGTGTTAGAGCCATGAGAATTAATGTTCCTGGATTTGCATTCCATAAGGCACTCAAGGTAACATCATTTTACTCTCTTTTAAGTTTAGTGATAAAAATTTAGTTTCAGGGTTTATTTGGATTGACTTATTCGAGTTTATTTACACACCTTGCAGTACTCCTGAGTGACTTCTTTGTATTTCTACAATATTCCTTGTGAAAATCTTGAAATTCTTAAAATGCCATGTCTTATACATTACTTATTTTTTTTATAGGCAAGGAAAAATCTAGTGGCTATATTTCAATCAATTGTGGACAAGAGAAGAAATGAAAGGAGGGAAAAATTATTACCTGGCCAAAAAGCCAAAGATATGATGGATGCTTTGGTAGATGTTGAAGATGAAAATGGAAGAAAATTGGGTGATGATGAAATCATTGATATCATGTTGATGTACTTGAATGCTGGTCATGAATCTTCAGGTCATGTAACCATGTGGGCTACCTATTTCTTGCAAAGGCATCCTGAATTTTTCAAAAAGGCTAAGGTATCAAATCACCTAGTTTTTGTTTGCTTTGTGAATTTTTTTTTCTTCAAATTTGTGTTAATTTGATTTGTTTCTTGATGATAATACTACCTTTAATAGGAAGAACAAGAGGAAATCTTAAGGAAAAGGCCTTCCACACAAAAAGGATTGAAGCTAGAGGATGTTAGAAAGATGGATTATCTTTCTAAGGTAGGGATTGTAAATTGTTGATTTAAGGTTACTTACTTTCAACTTTTAGTTGATATTTTTATGATGAAATCACTTTTTATGTGTCTACAATCGCATAGGTGATTGATGAAACAATGCGACTGATTACATTCTCACTAGTCGTCTTTCGGGAGGCAACATCTGACGTCAATATCAATGGTTAGTATAAGATTTCATTACATAATATTCAATTTTACTTAAACATAGAATTCAAATAGGTCTTGTTAATTTAAAAACCGACCTTACTATCACACATGAATTTGGTGGAACTCGTTTGAATTTCAGCCGATAAAAGAATGTTTGTTCTAATCACTTATCTTTTTTCATGTGTAGTATTTTCTTCATAGCACTAAATAGTCACTATATTTTGATGTTATAGGTTACCTCATTCCAAAAGGTTGGAAAGCTCTAGTTTGGTTCAGGTCGGTTCACCTTGACCCAGAAATTTATCCTAAGCCATTCGAGTTCAATCCTGATAGATGGGAAAAAGTAAGTCACAACCATTTAATTTTTTATTACTACTCATTTGAATTGAACAAATTAAGTGATTAATTCCATATATTTGACAATTTGTTTGATGTTGATTCTTAGGAGGTGCACAAAGCTGGAGAATTCCTTCCATTTGGAGGAGGAACTAGATTGTGCCCTGGAAATGATCTTGCTAAGCTGGAAATCTCAGTTTTCCTTCACCACTTTCTCCTCAATTATGAGTAATATATTTTCTCCCTCTTTTTACTACTCACATGAATTTTGTTCCCACACACACAATATTTTGTTGAAGCAAAGTATACATGATACCAATATTAAAATTGATCAAAAGGTACTTGTGCATATTGAGAGAAAATTATTATTAATAACGATTGTACGCACATTTTACAATTATTTCGTATAAAATTTATATTTCGTCTTTCAAGGTTACAAAGTCAAACTTTTATCATAAAATTATTTTGGAAAATATAGAACACTACTAATGTTAATGTTGTGTCTTTCTTTCACAGGTTGGAACAACTCAACCCAAAATCTCCAGTGAGATTCTTGCCACACACAAGGCCAATGGACAATTGCTTGGCAAGGATCAAGAAACGTTCTGTGTAA

Protein sequence

>MS.gene00055.t1

MGSIWVVFGGVVGVLFILRTLLKNVNWLLYEAKLGSKQYSLPPGDMGWPVIGNMWSFLRAFKSNDPDSFMASFVKRFGKTGIYKVFMFGNPSVVVTTPEACKRVLTDDDKFVPGWPQSTVELIGEKSFIKMPFEEHKRLRRLTSSSINGYEALSVYLKKIEEVVISSLEKWTHMGEIEFLTQMRKLTFKIIIHIFLGSESDHVMEALEREYTGLNLGVRAMRINVPGFAFHKALKARKNLVAIFQSIVDKRRNERREKLLPGQKAKDMMDALVDVEDENGRKLGDDEIIDIMLMYLNAGHESSGHVTMWATYFLQRHPEFFKKAKEEQEEILRKRPSTQKGLKLEDVRKMDYLSKVIDETMRLITFSLVVFREATSDVNINGYLIPKGWKALVWFRSVHLDPEIYPKPFEFNPDRWEKEVHKAGEFLPFGGGTRLCPGNDLAKLEISVFLHHFLLNYELEQLNPKSPVRFLPHTRPMDNCLARIKKRSV