Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001011.t1 | XP_003598897.1 | 100 | 115 | 0 | 0 | 1 | 115 | 1 | 115 | 3.20E-55 | 224.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001011.t1 | Q39080 | 91.3 | 115 | 10 | 0 | 1 | 115 | 1 | 115 | 4.8e-52 | 204.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001011.t1 | G7J1N4 | 100.0 | 115 | 0 | 0 | 1 | 115 | 1 | 115 | 2.3e-55 | 224.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene001011 | MS.gene014312 | PPI |
| MS.gene001011 | MS.gene057990 | PPI |
| MS.gene001011 | MS.gene50925 | PPI |
| MS.gene001011 | MS.gene54807 | PPI |
| MS.gene001011 | MS.gene37721 | PPI |
| MS.gene001011 | MS.gene014310 | PPI |
| MS.gene001011 | MS.gene056676 | PPI |
| MS.gene001011 | MS.gene069988 | PPI |
| MS.gene001011 | MS.gene50921 | PPI |
| MS.gene001011 | MS.gene34049 | PPI |
| MS.gene001011 | MS.gene039901 | PPI |
| MS.gene001011 | MS.gene039903 | PPI |
| MS.gene001011 | MS.gene003786 | PPI |
| MS.gene001011 | MS.gene45709 | PPI |
| MS.gene001011 | MS.gene05210 | PPI |
| MS.gene001011 | MS.gene064868 | PPI |
| MS.gene001011 | MS.gene057988 | PPI |
| MS.gene001011 | MS.gene66827 | PPI |
| MS.gene001011 | MS.gene57836 | PPI |
| MS.gene001011 | MS.gene50052 | PPI |
| MS.gene001011 | MS.gene005960 | PPI |
| MS.gene001011 | MS.gene50024 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001011.t1 | MTR_3g023120 | 100.000 | 115 | 0 | 0 | 1 | 115 | 1 | 115 | 4.82e-82 | 235 |
| MS.gene001011.t1 | MTR_5g029240 | 91.892 | 111 | 9 | 0 | 5 | 115 | 14 | 124 | 3.50e-73 | 213 |
| MS.gene001011.t1 | MTR_3g023120 | 100.000 | 88 | 0 | 0 | 1 | 88 | 1 | 88 | 2.22e-60 | 180 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001011.t1 | AT1G32210 | 91.304 | 115 | 10 | 0 | 1 | 115 | 1 | 115 | 8.07e-75 | 217 |
| MS.gene001011.t1 | AT2G35520 | 87.826 | 115 | 14 | 0 | 1 | 115 | 1 | 115 | 7.86e-72 | 209 |
| MS.gene001011.t1 | AT2G35520 | 87.826 | 115 | 14 | 0 | 1 | 115 | 1 | 115 | 7.86e-72 | 209 |
| MS.gene001011.t1 | AT2G35520 | 87.069 | 116 | 14 | 1 | 1 | 115 | 1 | 116 | 5.62e-70 | 205 |
| MS.gene001011.t1 | AT1G32210 | 92.045 | 88 | 7 | 0 | 1 | 88 | 1 | 88 | 5.53e-54 | 164 |
Find 33 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGTTCTCTTTATTCACT+TGG | 0.305994 | 3.2:+12320455 | None:intergenic |
| TTGCGTAGGAACTGCAGTTT+TGG | 0.327759 | 3.2:-12320713 | MS.gene001011:CDS |
| AAGATCTTATCCGCACTCTT+TGG | 0.366942 | 3.2:-12321940 | MS.gene001011:CDS |
| CCAGGTAGTTTACATGGCTT+TGG | 0.389862 | 3.2:-12320779 | MS.gene001011:intron |
| CCATTCAACTCCTTCCTGTC+GGG | 0.400280 | 3.2:-12320745 | MS.gene001011:CDS |
| CACATTGCACAGAACAAAAT+CGG | 0.410398 | 3.2:+12320112 | None:intergenic |
| GAAGCAACCTTGAGATTTGT+AGG | 0.416468 | 3.2:+12321899 | None:intergenic |
| TTGGTCATCATGAACTTCCT+TGG | 0.439540 | 3.2:-12320080 | MS.gene001011:CDS |
| GTGCAATGTGGTGCTCCATT+TGG | 0.442688 | 3.2:-12320099 | MS.gene001011:CDS |
| TCTCTTTATTCACTTGGATC+CGG | 0.452230 | 3.2:+12320461 | None:intergenic |
| CTTGAGATTTGTAGGGGTTG+CGG | 0.463644 | 3.2:+12321907 | None:intergenic |
| TAAAGAGAACAAGGAATTCA+AGG | 0.465642 | 3.2:-12320446 | MS.gene001011:intron |
| TCCATTCAACTCCTTCCTGT+CGG | 0.477836 | 3.2:-12320746 | MS.gene001011:CDS |
| TAATGACCAGGTAGTTTACA+TGG | 0.484084 | 3.2:-12320785 | MS.gene001011:intron |
| GGTAGTTTACATGGCTTTGG+TGG | 0.498163 | 3.2:-12320776 | MS.gene001011:CDS |
| AAAATCGGCAAAAGCACGCT+CGG | 0.501380 | 3.2:+12320127 | None:intergenic |
| AAGCAACCTTGAGATTTGTA+GGG | 0.501781 | 3.2:+12321900 | None:intergenic |
| GGAAGTTCATGATGACCAAA+TGG | 0.507403 | 3.2:+12320084 | None:intergenic |
| TGTCTTCACTGCCCTCATCC+AGG | 0.517420 | 3.2:-12321782 | MS.gene001011:intron |
| GGCTGGGAAGTACCTGGATG+AGG | 0.523307 | 3.2:+12321770 | None:intergenic |
| CCCGACAGGAAGGAGTTGAA+TGG | 0.559066 | 3.2:+12320745 | None:intergenic |
| CGCAAGAAAGTACTCCCGAC+AGG | 0.560225 | 3.2:+12320731 | None:intergenic |
| CCAAGTGAATAAAGAGAACA+AGG | 0.563011 | 3.2:-12320455 | MS.gene001011:CDS |
| AAATCGGCAAAAGCACGCTC+GGG | 0.564599 | 3.2:+12320128 | None:intergenic |
| CGCAACCCCTACAAATCTCA+AGG | 0.574273 | 3.2:-12321906 | MS.gene001011:intron |
| TCGGGAGTACTTTCTTGCGT+AGG | 0.583147 | 3.2:-12320727 | MS.gene001011:CDS |
| GTAGTTTACATGGCTTTGGT+GGG | 0.595250 | 3.2:-12320775 | MS.gene001011:CDS |
| GCTGGGAAGTACCTGGATGA+GGG | 0.596179 | 3.2:+12321771 | None:intergenic |
| AGCAACCTTGAGATTTGTAG+GGG | 0.616825 | 3.2:+12321901 | None:intergenic |
| AGAAAGTACTCCCGACAGGA+AGG | 0.619092 | 3.2:+12320735 | None:intergenic |
| GATGGTGAAGTCTACTGCTA+AGG | 0.623786 | 3.2:-12321969 | MS.gene001011:CDS |
| ACATGAACCCAATTTAACCA+AGG | 0.672277 | 3.2:+12320063 | None:intergenic |
| AATAAGCAGACCAAAGAGTG+CGG | 0.710275 | 3.2:+12321930 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTAAAACATTAGATTT+GGG | + | chr3.2:12321109-12321128 | None:intergenic | 10.0% |
| !!! | TATTTTTAAAACATTAGATT+TGG | + | chr3.2:12321110-12321129 | None:intergenic | 10.0% |
| !!! | ATTTTAGAATATTGATAAAG+TGG | - | chr3.2:12320598-12320617 | MS.gene001011:intron | 15.0% |
| !! | AAAGGAAAAAAATAATGTGT+TGG | - | chr3.2:12321827-12321846 | MS.gene001011:intron | 20.0% |
| !! | AAATTAATATTTGTGAAGGT+TGG | - | chr3.2:12321143-12321162 | MS.gene001011:intron | 20.0% |
| !! | ACTGAAATTAATATTTGTGA+AGG | - | chr3.2:12321139-12321158 | MS.gene001011:intron | 20.0% |
| !! | GATATATGAAATATTCATAG+AGG | + | chr3.2:12321779-12321798 | None:intergenic | 20.0% |
| !! | GATATATTCTTACAGATAAT+TGG | - | chr3.2:12321866-12321885 | MS.gene001011:intron | 20.0% |
| !! | TCTCAACATGTAATATTTAT+AGG | - | chr3.2:12321701-12321720 | MS.gene001011:intron | 20.0% |
| !!! | AATGACATTAAGTTGATATT+AGG | - | chr3.2:12320480-12320499 | MS.gene001011:intron | 20.0% |
| !!! | CGAAGTTGATTTAAAAATTT+TGG | - | chr3.2:12321365-12321384 | MS.gene001011:intron | 20.0% |
| !!! | CTCAGATACATTTTTTTTTA+AGG | - | chr3.2:12321433-12321452 | MS.gene001011:intron | 20.0% |
| !!! | TTGGTATTTCATTTTAATAC+AGG | - | chr3.2:12321885-12321904 | MS.gene001011:intron | 20.0% |
| ! | AACATTTGTAATCTCACTTT+CGG | - | chr3.2:12320982-12321001 | MS.gene001011:intron | 25.0% |
| ! | AGAGTTGCATGAATAATTAT+AGG | + | chr3.2:12321684-12321703 | None:intergenic | 25.0% |
| ! | ATTCTGCAAATACTAACATA+AGG | + | chr3.2:12320463-12320482 | None:intergenic | 25.0% |
| ! | CATAATGATCAATGATCTAA+AGG | + | chr3.2:12320232-12320251 | None:intergenic | 25.0% |
| ! | TACAATTTCAAGGATTGAAT+TGG | + | chr3.2:12320390-12320409 | None:intergenic | 25.0% |
| ! | TTAGAATATTGATAAAGTGG+AGG | - | chr3.2:12320601-12320620 | MS.gene001011:intron | 25.0% |
| !! | AATTTTGCAGAAATAGACAT+GGG | + | chr3.2:12320177-12320196 | None:intergenic | 25.0% |
| !! | TTGATAACATAACTAGACAT+AGG | - | chr3.2:12320539-12320558 | MS.gene001011:intron | 25.0% |
| !! | TTTCCATTTTATTAATGACC+AGG | - | chr3.2:12321247-12321266 | MS.gene001011:intron | 25.0% |
| !!! | CAGATTTTTGAAGTGATTTA+TGG | + | chr3.2:12320836-12320855 | None:intergenic | 25.0% |
| !!! | GTTTGATATATTGATTTCAG+TGG | + | chr3.2:12320768-12320787 | None:intergenic | 25.0% |
| AAAATACTCAATCCACGAAT+GGG | - | chr3.2:12320709-12320728 | MS.gene001011:intron | 30.0% | |
| AAACTTATGCATATGAACCT+AGG | + | chr3.2:12321509-12321528 | None:intergenic | 30.0% | |
| AATACCATGATACACAAGAA+AGG | + | chr3.2:12321631-12321650 | None:intergenic | 30.0% | |
| AATTCCTTTCTTGTGTATCA+TGG | - | chr3.2:12321624-12321643 | MS.gene001011:intron | 30.0% | |
| AGAAAAGAAAAAACCCAAGT+CGG | + | chr3.2:12320659-12320678 | None:intergenic | 30.0% | |
| AGCAATTTCTCAATAATGTC+TGG | + | chr3.2:12321026-12321045 | None:intergenic | 30.0% | |
| ATCGAAAGACACTATCATAT+TGG | + | chr3.2:12320358-12320377 | None:intergenic | 30.0% | |
| CAGCATAATGTCATGATATA+TGG | + | chr3.2:12320801-12320820 | None:intergenic | 30.0% | |
| CTACCTGGTCATTAATAAAA+TGG | + | chr3.2:12321253-12321272 | None:intergenic | 30.0% | |
| GACAAACTGGTAAAAAATAG+AGG | + | chr3.2:12321562-12321581 | None:intergenic | 30.0% | |
| TAAAGAGAACAAGGAATTCA+AGG | - | chr3.2:12321598-12321617 | MS.gene001011:intron | 30.0% | |
| TAACTTCAACGTAAACCTAT+CGG | + | chr3.2:12321169-12321188 | None:intergenic | 30.0% | |
| TCGAAAGACACTATCATATT+GGG | + | chr3.2:12320357-12320376 | None:intergenic | 30.0% | |
| TGAAACTACATAACATAGTC+AGG | + | chr3.2:12321749-12321768 | None:intergenic | 30.0% | |
| TGATTTCAGTGGCTTAAATT+GGG | + | chr3.2:12320757-12320776 | None:intergenic | 30.0% | |
| TTGATTTCAGTGGCTTAAAT+TGG | + | chr3.2:12320758-12320777 | None:intergenic | 30.0% | |
| ! | CAATTTTGCAGAAATAGACA+TGG | + | chr3.2:12320178-12320197 | None:intergenic | 30.0% |
| ! | CAGAGATCATTTTGCAATAT+CGG | + | chr3.2:12320413-12320432 | None:intergenic | 30.0% |
| ! | TTCAGGTTAACATTAAAGCA+AGG | + | chr3.2:12320298-12320317 | None:intergenic | 30.0% |
| !!! | ATTTTTTACCAGTTTGTCTC+CGG | - | chr3.2:12321564-12321583 | MS.gene001011:intron | 30.0% |
| !!! | TTTTTTTAAGGAAGTGCACT+CGG | - | chr3.2:12321445-12321464 | MS.gene001011:intron | 30.0% |
| AAAGACACTATCATATTGGG+AGG | + | chr3.2:12320354-12320373 | None:intergenic | 35.0% | |
| AAGCAACCTTGAGATTTGTA+GGG | + | chr3.2:12320147-12320166 | None:intergenic | 35.0% | |
| AATTACCAGCTCATAATTCC+AGG | - | chr3.2:12320571-12320590 | MS.gene001011:intron | 35.0% | |
| ATTACCAGCTCATAATTCCA+GGG | - | chr3.2:12320572-12320591 | MS.gene001011:intron | 35.0% | |
| ATTTCAGTGGCTTAAATTGG+GGG | + | chr3.2:12320755-12320774 | None:intergenic | 35.0% | |
| CACATTGCACAGAACAAAAT+CGG | + | chr3.2:12321935-12321954 | None:intergenic | 35.0% | |
| CATTAAACTAGAACCTGGAA+GGG | + | chr3.2:12321082-12321101 | None:intergenic | 35.0% | |
| CCAAGTGAATAAAGAGAACA+AGG | - | chr3.2:12321589-12321608 | MS.gene001011:intron | 35.0% | |
| CCTTGTTCTCTTTATTCACT+TGG | + | chr3.2:12321592-12321611 | None:intergenic | 35.0% | |
| CTCAATAATGTCTGGATTCT+GGG | + | chr3.2:12321018-12321037 | None:intergenic | 35.0% | |
| CTGAACAAAGTAGAAAGGAA+AGG | - | chr3.2:12321809-12321828 | MS.gene001011:CDS | 35.0% | |
| CTTGACTGAACAAAGTAGAA+AGG | - | chr3.2:12321804-12321823 | MS.gene001011:CDS | 35.0% | |
| GAAAATACTCAATCCACGAA+TGG | - | chr3.2:12320708-12320727 | MS.gene001011:intron | 35.0% | |
| GAGTTCATTAAACTAGAACC+TGG | + | chr3.2:12321087-12321106 | None:intergenic | 35.0% | |
| GATTTCAGTGGCTTAAATTG+GGG | + | chr3.2:12320756-12320775 | None:intergenic | 35.0% | |
| GCAATATCGGTACAATTTCA+AGG | + | chr3.2:12320400-12320419 | None:intergenic | 35.0% | |
| GTGTATCATGGTATTTGACT+TGG | - | chr3.2:12321636-12321655 | MS.gene001011:intron | 35.0% | |
| GTTAACATTAAAGCAAGGCT+GGG | + | chr3.2:12320293-12320312 | None:intergenic | 35.0% | |
| GTTCGAGGTAGTTAGAAAAA+GGG | + | chr3.2:12320957-12320976 | None:intergenic | 35.0% | |
| TAATGACCAGGTAGTTTACA+TGG | - | chr3.2:12321259-12321278 | MS.gene001011:intron | 35.0% | |
| TATACAGCCCTACAATTTCA+AGG | - | chr3.2:12320632-12320651 | MS.gene001011:intron | 35.0% | |
| TCATTAAACTAGAACCTGGA+AGG | + | chr3.2:12321083-12321102 | None:intergenic | 35.0% | |
| TCTCAATAATGTCTGGATTC+TGG | + | chr3.2:12321019-12321038 | None:intergenic | 35.0% | |
| TCTCTTTATTCACTTGGATC+CGG | + | chr3.2:12321586-12321605 | None:intergenic | 35.0% | |
| TGTTCGAGGTAGTTAGAAAA+AGG | + | chr3.2:12320958-12320977 | None:intergenic | 35.0% | |
| ! | GATCGATTCACTAACATTTC+AGG | + | chr3.2:12320315-12320334 | None:intergenic | 35.0% |
| ! | TTGAAGTGATTTATGGACTG+CGG | + | chr3.2:12320829-12320848 | None:intergenic | 35.0% |
| !! | ACAATAGTTCTAATCCACCT+AGG | - | chr3.2:12321489-12321508 | MS.gene001011:intron | 35.0% |
| !! | CAATATTCTAAAATGACCCC+TGG | + | chr3.2:12320592-12320611 | None:intergenic | 35.0% |
| !!! | ACTTTTTTCTAACCCTGCTT+TGG | - | chr3.2:12320201-12320220 | MS.gene001011:intron | 35.0% |
| AAGATCTTATCCGCACTCTT+TGG | - | chr3.2:12320104-12320123 | MS.gene001011:CDS | 40.0% | |
| AAGTCGGTCCTTGAAATTGT+AGG | + | chr3.2:12320643-12320662 | None:intergenic | 40.0% | |
| AATAAGCAGACCAAAGAGTG+CGG | + | chr3.2:12320117-12320136 | None:intergenic | 40.0% | |
| AATAATGTCTGGATTCTGGG+AGG | + | chr3.2:12321015-12321034 | None:intergenic | 40.0% | |
| AGCAACCTTGAGATTTGTAG+GGG | + | chr3.2:12320146-12320165 | None:intergenic | 40.0% | |
| AGTCGGTCCTTGAAATTGTA+GGG | + | chr3.2:12320642-12320661 | None:intergenic | 40.0% | |
| ATTGTAGGGCTGTATAAACC+TGG | + | chr3.2:12320628-12320647 | None:intergenic | 40.0% | |
| CTAAAGGAAAAGCCAAAGCA+GGG | + | chr3.2:12320216-12320235 | None:intergenic | 40.0% | |
| CTTATGCATATGAACCTAGG+TGG | + | chr3.2:12321506-12321525 | None:intergenic | 40.0% | |
| GAAGCAACCTTGAGATTTGT+AGG | + | chr3.2:12320148-12320167 | None:intergenic | 40.0% | |
| GGAAGTTCATGATGACCAAA+TGG | + | chr3.2:12321963-12321982 | None:intergenic | 40.0% | |
| GGTTAACATTAAAGCAAGGC+TGG | + | chr3.2:12320294-12320313 | None:intergenic | 40.0% | |
| TACAATTTCAAGGACCGACT+TGG | - | chr3.2:12320642-12320661 | MS.gene001011:intron | 40.0% | |
| TATGACAGTGTGCATGTTTC+TGG | + | chr3.2:12320868-12320887 | None:intergenic | 40.0% | |
| TATTGATAAAGTGGAGGACC+AGG | - | chr3.2:12320607-12320626 | MS.gene001011:intron | 40.0% | |
| TCTAAAGGAAAAGCCAAAGC+AGG | + | chr3.2:12320217-12320236 | None:intergenic | 40.0% | |
| TTACCAGCTCATAATTCCAG+GGG | - | chr3.2:12320573-12320592 | MS.gene001011:intron | 40.0% | |
| TTGGTCATCATGAACTTCCT+TGG | - | chr3.2:12321964-12321983 | MS.gene001011:CDS | 40.0% | |
| ! | ACAATTTCAAGGACCGACTT+GGG | - | chr3.2:12320643-12320662 | MS.gene001011:intron | 40.0% |
| ! | CGATTTTGTTCTGTGCAATG+TGG | - | chr3.2:12321933-12321952 | MS.gene001011:CDS | 40.0% |
| !! | CCAGTAAGCTAGCTTCTTTT+GGG | + | chr3.2:12320911-12320930 | None:intergenic | 40.0% |
| !! | GTAGTTTACATGGCTTTGGT+GGG | - | chr3.2:12321269-12321288 | MS.gene001011:intron | 40.0% |
| !! | TCCAGTAAGCTAGCTTCTTT+TGG | + | chr3.2:12320912-12320931 | None:intergenic | 40.0% |
| ATACTCAATCCACGAATGGG+TGG | - | chr3.2:12320712-12320731 | MS.gene001011:CDS | 45.0% | |
| CCAAAGCCATGTAAACTACC+TGG | + | chr3.2:12321268-12321287 | None:intergenic | 45.0% | |
| CCAGGTAGTTTACATGGCTT+TGG | - | chr3.2:12321265-12321284 | MS.gene001011:intron | 45.0% | |
| CTTGAGATTTGTAGGGGTTG+CGG | + | chr3.2:12320140-12320159 | None:intergenic | 45.0% | |
| TACAAATGTTGCGCTGTTCG+AGG | + | chr3.2:12320972-12320991 | None:intergenic | 45.0% | |
| TCCATTCAACTCCTTCCTGT+CGG | - | chr3.2:12321298-12321317 | MS.gene001011:intron | 45.0% | |
| ! | AAAATCGGCAAAAGCACGCT+CGG | + | chr3.2:12321920-12321939 | None:intergenic | 45.0% |
| ! | ATTTGTGAAGGTTGGCCGAT+AGG | - | chr3.2:12321151-12321170 | MS.gene001011:intron | 45.0% |
| ! | CCCAAAAGAAGCTAGCTTAC+TGG | - | chr3.2:12320908-12320927 | MS.gene001011:intron | 45.0% |
| ! | TGTTTTCATCCACCCATTCG+TGG | + | chr3.2:12320724-12320743 | None:intergenic | 45.0% |
| ! | TTGCGTAGGAACTGCAGTTT+TGG | - | chr3.2:12321331-12321350 | MS.gene001011:intron | 45.0% |
| !! | GGTAGTTTACATGGCTTTGG+TGG | - | chr3.2:12321268-12321287 | MS.gene001011:intron | 45.0% |
| ACTTGGATCCGGAGACAAAC+TGG | + | chr3.2:12321575-12321594 | None:intergenic | 50.0% | |
| CCATTCAACTCCTTCCTGTC+GGG | - | chr3.2:12321299-12321318 | MS.gene001011:intron | 50.0% | |
| CGCAACCCCTACAAATCTCA+AGG | - | chr3.2:12320138-12320157 | MS.gene001011:CDS | 50.0% | |
| GTGCAATGTGGTGCTCCATT+TGG | - | chr3.2:12321945-12321964 | MS.gene001011:CDS | 50.0% | |
| TGACCCCTGGAATTATGAGC+TGG | + | chr3.2:12320579-12320598 | None:intergenic | 50.0% | |
| TTGCCTGACAATACCCTTCC+AGG | - | chr3.2:12321066-12321085 | MS.gene001011:intron | 50.0% | |
| ! | AAATCGGCAAAAGCACGCTC+GGG | + | chr3.2:12321919-12321938 | None:intergenic | 50.0% |
| !! | AGAAAGTACTCCCGACAGGA+AGG | + | chr3.2:12321312-12321331 | None:intergenic | 50.0% |
| !! | GAACCTGGAAGGGTATTGTC+AGG | + | chr3.2:12321072-12321091 | None:intergenic | 50.0% |
| !! | GTAGGAACTGCAGTTTTGGC+TGG | - | chr3.2:12321335-12321354 | MS.gene001011:intron | 50.0% |
| !! | TCGGGAGTACTTTCTTGCGT+AGG | - | chr3.2:12321317-12321336 | MS.gene001011:intron | 50.0% |
| CCCGACAGGAAGGAGTTGAA+TGG | + | chr3.2:12321302-12321321 | None:intergenic | 55.0% | |
| TGTCTTCACTGCCCTCATCC+AGG | - | chr3.2:12320262-12320281 | MS.gene001011:intron | 55.0% | |
| !! | AAGCAAGGCTGGGAAGTACC+TGG | + | chr3.2:12320283-12320302 | None:intergenic | 55.0% |
| !! | CGCAAGAAAGTACTCCCGAC+AGG | + | chr3.2:12321316-12321335 | None:intergenic | 55.0% |
| !! | GCTGGGAAGTACCTGGATGA+GGG | + | chr3.2:12320276-12320295 | None:intergenic | 55.0% |
| !! | GGCTGGGAAGTACCTGGATG+AGG | + | chr3.2:12320277-12320296 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 12320076 | 12321990 | 12320076 | ID=MS.gene001011 |
| chr3.2 | mRNA | 12320076 | 12321990 | 12320076 | ID=MS.gene001011.t1;Parent=MS.gene001011 |
| chr3.2 | exon | 12321907 | 12321990 | 12321907 | ID=MS.gene001011.t1.exon1;Parent=MS.gene001011.t1 |
| chr3.2 | CDS | 12321907 | 12321990 | 12321907 | ID=cds.MS.gene001011.t1;Parent=MS.gene001011.t1 |
| chr3.2 | exon | 12321783 | 12321830 | 12321783 | ID=MS.gene001011.t1.exon2;Parent=MS.gene001011.t1 |
| chr3.2 | CDS | 12321783 | 12321830 | 12321783 | ID=cds.MS.gene001011.t1;Parent=MS.gene001011.t1 |
| chr3.2 | exon | 12320710 | 12320797 | 12320710 | ID=MS.gene001011.t1.exon3;Parent=MS.gene001011.t1 |
| chr3.2 | CDS | 12320710 | 12320797 | 12320710 | ID=cds.MS.gene001011.t1;Parent=MS.gene001011.t1 |
| chr3.2 | exon | 12320447 | 12320490 | 12320447 | ID=MS.gene001011.t1.exon4;Parent=MS.gene001011.t1 |
| chr3.2 | CDS | 12320447 | 12320490 | 12320447 | ID=cds.MS.gene001011.t1;Parent=MS.gene001011.t1 |
| chr3.2 | exon | 12320076 | 12320159 | 12320076 | ID=MS.gene001011.t1.exon5;Parent=MS.gene001011.t1 |
| chr3.2 | CDS | 12320076 | 12320159 | 12320076 | ID=cds.MS.gene001011.t1;Parent=MS.gene001011.t1 |
| Gene Sequence |
| Protein sequence |
