Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50921.t1 | XP_003598897.1 | 98.3 | 115 | 2 | 0 | 1 | 115 | 1 | 115 | 9.20E-55 | 222.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50921.t1 | Q39080 | 90.4 | 115 | 11 | 0 | 1 | 115 | 1 | 115 | 8.2e-52 | 204.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50921.t1 | G7J1N4 | 98.3 | 115 | 2 | 0 | 1 | 115 | 1 | 115 | 6.6e-55 | 222.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052209 | MS.gene50921 | 0.801204 | 1.01E-48 | -1.69E-46 |
| MS.gene053224 | MS.gene50921 | 0.822914 | 1.84E-53 | -1.69E-46 |
| MS.gene054662 | MS.gene50921 | 0.802231 | 6.19E-49 | -1.69E-46 |
| MS.gene057988 | MS.gene50921 | 0.973694 | 7.28E-137 | -1.69E-46 |
| MS.gene057990 | MS.gene50921 | 0.960826 | 5.35E-119 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene50921 | MS.gene66827 | PPI |
| MS.gene50921 | MS.gene50052 | PPI |
| MS.gene50921 | MS.gene50024 | PPI |
| MS.gene001011 | MS.gene50921 | PPI |
| MS.gene50921 | MS.gene57836 | PPI |
| MS.gene50921 | MS.gene057990 | PPI |
| MS.gene003786 | MS.gene50921 | PPI |
| MS.gene50921 | MS.gene54807 | PPI |
| MS.gene50921 | MS.gene014310 | PPI |
| MS.gene50921 | MS.gene014312 | PPI |
| MS.gene50921 | MS.gene34049 | PPI |
| MS.gene005960 | MS.gene50921 | PPI |
| MS.gene50925 | MS.gene50921 | PPI |
| MS.gene50921 | MS.gene37721 | PPI |
| MS.gene50921 | MS.gene056676 | PPI |
| MS.gene50921 | MS.gene45709 | PPI |
| MS.gene50921 | MS.gene069988 | PPI |
| MS.gene05210 | MS.gene50921 | PPI |
| MS.gene50921 | MS.gene039901 | PPI |
| MS.gene50921 | MS.gene064868 | PPI |
| MS.gene50921 | MS.gene057988 | PPI |
| MS.gene50921 | MS.gene039903 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50921.t1 | MTR_3g023120 | 98.261 | 115 | 2 | 0 | 1 | 115 | 1 | 115 | 3.12e-81 | 233 |
| MS.gene50921.t1 | MTR_5g029240 | 93.694 | 111 | 7 | 0 | 5 | 115 | 14 | 124 | 8.59e-74 | 215 |
| MS.gene50921.t1 | MTR_3g023120 | 97.727 | 88 | 2 | 0 | 1 | 88 | 1 | 88 | 1.30e-59 | 178 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50921.t1 | AT1G32210 | 90.435 | 115 | 11 | 0 | 1 | 115 | 1 | 115 | 2.03e-74 | 216 |
| MS.gene50921.t1 | AT2G35520 | 86.957 | 115 | 15 | 0 | 1 | 115 | 1 | 115 | 2.63e-71 | 208 |
| MS.gene50921.t1 | AT2G35520 | 86.957 | 115 | 15 | 0 | 1 | 115 | 1 | 115 | 2.63e-71 | 208 |
| MS.gene50921.t1 | AT2G35520 | 86.207 | 116 | 15 | 1 | 1 | 115 | 1 | 116 | 1.58e-69 | 204 |
| MS.gene50921.t1 | AT1G32210 | 90.909 | 88 | 8 | 0 | 1 | 88 | 1 | 88 | 1.10e-53 | 164 |
Find 31 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTAACTCCTTCCTTTC+AGG | 0.114983 | 3.3:-13869932 | MS.gene50921:CDS |
| TTGCGTAGGGACTGCAGTTC+TGG | 0.282207 | 3.3:-13869900 | MS.gene50921:CDS |
| TTGGTGATCATGAACTTTCT+TGG | 0.304837 | 3.3:-13869366 | MS.gene50921:CDS |
| CCTTGTTCTCTTTATTCACT+TGG | 0.305994 | 3.3:+13869692 | None:intergenic |
| CCTGAAAGGAAGGAGTTAAA+TGG | 0.336746 | 3.3:+13869932 | None:intergenic |
| AAGATCTTCTCCGCACTCTT+TGG | 0.356756 | 3.3:-13871354 | MS.gene50921:CDS |
| CTGCAATGTGGTGCTCCATT+TGG | 0.370798 | 3.3:-13869385 | MS.gene50921:CDS |
| CCAGGTAGTTTACATGGCTT+TGG | 0.389862 | 3.3:-13869966 | MS.gene50921:intron |
| TCTCTTTATTCACTTGGATC+CGG | 0.452230 | 3.3:+13869698 | None:intergenic |
| AAAATCTGCAAAAGCGCGCT+CGG | 0.463481 | 3.3:+13869413 | None:intergenic |
| TAAAGAGAACAAGGAATTCA+AGG | 0.465642 | 3.3:-13869683 | MS.gene50921:intron |
| AGGAACAACCTTGAGATTTG+TGG | 0.468795 | 3.3:+13871312 | None:intergenic |
| TGTCTTCACTGCCCTCCTCC+AGG | 0.470127 | 3.3:-13871197 | MS.gene50921:intron |
| GGAACAACCTTGAGATTTGT+GGG | 0.478791 | 3.3:+13871313 | None:intergenic |
| TAATGACCAGGTAGTTTACA+TGG | 0.487275 | 3.3:-13869972 | MS.gene50921:intron |
| TCAGGCGTACTTTCTTGCGT+AGG | 0.489843 | 3.3:-13869914 | MS.gene50921:CDS |
| CAGGCGTACTTTCTTGCGTA+GGG | 0.494144 | 3.3:-13869913 | MS.gene50921:CDS |
| AAATCTGCAAAAGCGCGCTC+GGG | 0.496102 | 3.3:+13869414 | None:intergenic |
| GGTAGTTTACATGGCTTTGG+TGG | 0.498163 | 3.3:-13869963 | MS.gene50921:CDS |
| CGCAAGAAAGTACGCCTGAA+AGG | 0.506042 | 3.3:+13869918 | None:intergenic |
| GAAAGTTCATGATCACCAAA+TGG | 0.518501 | 3.3:+13869370 | None:intergenic |
| GGAAAGGAAGTACCTGGAGG+AGG | 0.546155 | 3.3:+13871185 | None:intergenic |
| GTAGGGACTGCAGTTCTGGC+TGG | 0.550415 | 3.3:-13869896 | MS.gene50921:intron |
| AGAAAGTACGCCTGAAAGGA+AGG | 0.558835 | 3.3:+13869922 | None:intergenic |
| CCAAGTGAATAAAGAGAACA+AGG | 0.563011 | 3.3:-13869692 | MS.gene50921:CDS |
| GAAAGGAAGTACCTGGAGGA+GGG | 0.586265 | 3.3:+13871186 | None:intergenic |
| GATGGTGAAGTCTACTGCTA+AGG | 0.589667 | 3.3:-13871383 | MS.gene50921:CDS |
| GTAGTTTACATGGCTTTGGT+GGG | 0.595250 | 3.3:-13869962 | MS.gene50921:CDS |
| AACAACCTTGAGATTTGTGG+GGG | 0.618905 | 3.3:+13871315 | None:intergenic |
| GAACAACCTTGAGATTTGTG+GGG | 0.633022 | 3.3:+13871314 | None:intergenic |
| AATAAGCAGACCAAAGAGTG+CGG | 0.691016 | 3.3:+13871344 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTAAAAAATTAGACTT+GGG | + | chr3.3:13870618-13870637 | None:intergenic | 15.0% |
| !!! | TACAAGTGAAATTAATATTT+TGG | - | chr3.3:13870644-13870663 | MS.gene50921:intron | 15.0% |
| !!! | TGTTTTTAAAAAATTAGACT+TGG | + | chr3.3:13870619-13870638 | None:intergenic | 15.0% |
| !! | AATTCCTAATTCCTAATTAA+TGG | + | chr3.3:13870320-13870339 | None:intergenic | 20.0% |
| !! | TCATTAAACTAGAATCTAAA+AGG | + | chr3.3:13870592-13870611 | None:intergenic | 20.0% |
| !! | TTGTATTAATGTCATTATTC+TGG | - | chr3.3:13871149-13871168 | MS.gene50921:intron | 20.0% |
| !!! | AAATCAATCTTTGATTTTTG+TGG | - | chr3.3:13869650-13869669 | MS.gene50921:intron | 20.0% |
| !!! | GAAATTAATATTTTGGTGAT+GGG | - | chr3.3:13870651-13870670 | MS.gene50921:intron | 20.0% |
| !!! | TGAAATTAATATTTTGGTGA+TGG | - | chr3.3:13870650-13870669 | MS.gene50921:intron | 20.0% |
| ! | AACATCATAATACACAAGAA+AGG | + | chr3.3:13871094-13871113 | None:intergenic | 25.0% |
| ! | AAGATACAAGAAATATTCAG+AGG | + | chr3.3:13871200-13871219 | None:intergenic | 25.0% |
| ! | ACAAACTGGTTAAAAAATAG+AGG | + | chr3.3:13871024-13871043 | None:intergenic | 25.0% |
| ! | ACTAATCTGATCATGATATT+CGG | + | chr3.3:13869681-13869700 | None:intergenic | 25.0% |
| ! | AGAGTAAGATTAAAAATTGG+AGG | + | chr3.3:13870554-13870573 | None:intergenic | 25.0% |
| ! | ATGATTGGTATTTCATATAC+AGG | - | chr3.3:13871299-13871318 | MS.gene50921:intron | 25.0% |
| ! | CTTTATGTGTGTTATGTAAT+TGG | + | chr3.3:13869857-13869876 | None:intergenic | 25.0% |
| ! | GAGTAAGATTAAAAATTGGA+GGG | + | chr3.3:13870553-13870572 | None:intergenic | 25.0% |
| ! | GGTAGAGTAAGATTAAAAAT+TGG | + | chr3.3:13870557-13870576 | None:intergenic | 25.0% |
| ! | TATATGCAATAACATGTGTT+TGG | + | chr3.3:13869753-13869772 | None:intergenic | 25.0% |
| ! | TCTAAAAGGATAGTATTATC+TGG | + | chr3.3:13870578-13870597 | None:intergenic | 25.0% |
| ! | TGCAGGAAATACAAATATAT+AGG | - | chr3.3:13870155-13870174 | MS.gene50921:intron | 25.0% |
| !! | ATCTAGATAACAGTTTCTTT+TGG | + | chr3.3:13869881-13869900 | None:intergenic | 25.0% |
| !! | GATTGATTTACTAATGTTAC+AGG | + | chr3.3:13869639-13869658 | None:intergenic | 25.0% |
| !! | TCTAGATAACAGTTTCTTTT+GGG | + | chr3.3:13869880-13869899 | None:intergenic | 25.0% |
| !! | TTTTCATTTTCTTAATGACC+AGG | - | chr3.3:13870760-13870779 | MS.gene50921:intron | 25.0% |
| !!! | ATATTTTTGTAGAAATGCAG+AGG | + | chr3.3:13869465-13869484 | None:intergenic | 25.0% |
| !!! | TATTTTTGTAGAAATGCAGA+GGG | + | chr3.3:13869464-13869483 | None:intergenic | 25.0% |
| AAAACAAAGTTAACTTCCAC+GGG | - | chr3.3:13870101-13870120 | MS.gene50921:intron | 30.0% | |
| AAACTTATGCATATGAACCT+AGG | + | chr3.3:13870971-13870990 | None:intergenic | 30.0% | |
| AAGTAAGATCACAAATGTTG+TGG | + | chr3.3:13870493-13870512 | None:intergenic | 30.0% | |
| AATTCACCAAATCATCTTGA+AGG | - | chr3.3:13869981-13870000 | MS.gene50921:intron | 30.0% | |
| ACTGGTTAAAAAATAGAGGA+TGG | + | chr3.3:13871020-13871039 | None:intergenic | 30.0% | |
| ATCTTGAAGGAAGTAGATTA+GGG | - | chr3.3:13869994-13870013 | MS.gene50921:intron | 30.0% | |
| ATGTCTGGAAGGATATTATT+TGG | + | chr3.3:13870518-13870537 | None:intergenic | 30.0% | |
| CAAAACAAAGTTAACTTCCA+CGG | - | chr3.3:13870100-13870119 | MS.gene50921:intron | 30.0% | |
| CTTGACTGAACAAAATAGAA+AGG | - | chr3.3:13871223-13871242 | MS.gene50921:CDS | 30.0% | |
| GAAATGATGAAACAATGTGT+TGG | - | chr3.3:13871245-13871264 | MS.gene50921:intron | 30.0% | |
| GATAGATTCTTACAGATGAT+TGG | - | chr3.3:13871284-13871303 | MS.gene50921:intron | 30.0% | |
| GTGAAGAGTTCTATGATATT+TGG | + | chr3.3:13870449-13870468 | None:intergenic | 30.0% | |
| TAAAGAGAACAAGGAATTCA+AGG | - | chr3.3:13871061-13871080 | MS.gene50921:intron | 30.0% | |
| TTAGAAATTGAAGCAAGGAA+AGG | + | chr3.3:13869578-13869597 | None:intergenic | 30.0% | |
| ! | GATCTTTAGAAATTGAAGCA+AGG | + | chr3.3:13869583-13869602 | None:intergenic | 30.0% |
| !! | ATCATTGATTTGAGATCAGA+CGG | - | chr3.3:13870354-13870373 | MS.gene50921:intron | 30.0% |
| !!! | AGTTAACTTTGTTTTGCTGA+CGG | + | chr3.3:13870096-13870115 | None:intergenic | 30.0% |
| !!! | ATATTTTGGTGATGGGTTAA+AGG | - | chr3.3:13870658-13870677 | MS.gene50921:intron | 30.0% |
| !!! | TTTTTTAACCAGTTTGTCTC+CGG | - | chr3.3:13871027-13871046 | MS.gene50921:intron | 30.0% |
| AATCTGATCATGATATTCGG+AGG | + | chr3.3:13869678-13869697 | None:intergenic | 35.0% | |
| ACAAATATATAGGCTGCACA+TGG | - | chr3.3:13870165-13870184 | MS.gene50921:intron | 35.0% | |
| ATTCCTCAATAATGTCTGGA+AGG | + | chr3.3:13870529-13870548 | None:intergenic | 35.0% | |
| CAGATTTGTGAAGTAACTTC+TGG | + | chr3.3:13869803-13869822 | None:intergenic | 35.0% | |
| CATCTTGAAGGAAGTAGATT+AGG | - | chr3.3:13869993-13870012 | MS.gene50921:intron | 35.0% | |
| CCAAGTGAATAAAGAGAACA+AGG | - | chr3.3:13871052-13871071 | MS.gene50921:intron | 35.0% | |
| CCAGCCATTAATTAGGAATT+AGG | - | chr3.3:13870313-13870332 | MS.gene50921:intron | 35.0% | |
| CCTAATTCCTAATTAATGGC+TGG | + | chr3.3:13870316-13870335 | None:intergenic | 35.0% | |
| CCTTGTTCTCTTTATTCACT+TGG | + | chr3.3:13871055-13871074 | None:intergenic | 35.0% | |
| CTAAATGAAAAGCCAAAGCA+GGG | + | chr3.3:13869501-13869520 | None:intergenic | 35.0% | |
| CTACTTCCTTCAAGATGATT+TGG | + | chr3.3:13869990-13870009 | None:intergenic | 35.0% | |
| GAAAGTTCATGATCACCAAA+TGG | + | chr3.3:13871377-13871396 | None:intergenic | 35.0% | |
| GTGAATCGAATAGGTTACAT+AGG | + | chr3.3:13870064-13870083 | None:intergenic | 35.0% | |
| TAACTTCAACATCAACCTAC+TGG | + | chr3.3:13870688-13870707 | None:intergenic | 35.0% | |
| TAATGACCAGGTAGTTTACA+TGG | - | chr3.3:13870772-13870791 | MS.gene50921:intron | 35.0% | |
| TATCCTTCCAGACATTATTG+AGG | - | chr3.3:13870523-13870542 | MS.gene50921:intron | 35.0% | |
| TCTAAATGAAAAGCCAAAGC+AGG | + | chr3.3:13869502-13869521 | None:intergenic | 35.0% | |
| TCTCTTTATTCACTTGGATC+CGG | + | chr3.3:13871049-13871068 | None:intergenic | 35.0% | |
| TGTGACACGGTAAATAATCT+GGG | + | chr3.3:13870380-13870399 | None:intergenic | 35.0% | |
| TTACTTCACAAATCTGCAGA+AGG | - | chr3.3:13869807-13869826 | MS.gene50921:intron | 35.0% | |
| TTGGCATTAAATGTGTGACA+CGG | + | chr3.3:13870393-13870412 | None:intergenic | 35.0% | |
| ! | AGATTTTGTTCTCTGCAATG+TGG | - | chr3.3:13871347-13871366 | MS.gene50921:CDS | 35.0% |
| ! | GATCAGATTAGTCCAAATCA+GGG | - | chr3.3:13869689-13869708 | MS.gene50921:CDS | 35.0% |
| ! | GTTTCTTGGATTAGGATTCT+TGG | + | chr3.3:13870412-13870431 | None:intergenic | 35.0% |
| ! | TGATCAGATTAGTCCAAATC+AGG | - | chr3.3:13869688-13869707 | MS.gene50921:CDS | 35.0% |
| ! | TTGGTGATCATGAACTTTCT+TGG | - | chr3.3:13871378-13871397 | MS.gene50921:CDS | 35.0% |
| !! | ACAATAGTTCTAATCTGCCT+AGG | - | chr3.3:13870951-13870970 | MS.gene50921:intron | 35.0% |
| !! | GATGATTTGGTGAATTGTGA+TGG | + | chr3.3:13869977-13869996 | None:intergenic | 35.0% |
| !! | TATTTTTGCTAACCCTGCTT+TGG | - | chr3.3:13869486-13869505 | MS.gene50921:intron | 35.0% |
| AACAACCTTGAGATTTGTGG+GGG | + | chr3.3:13869432-13869451 | None:intergenic | 40.0% | |
| AATAAGCAGACCAAAGAGTG+CGG | + | chr3.3:13869403-13869422 | None:intergenic | 40.0% | |
| AGGAACAACCTTGAGATTTG+TGG | + | chr3.3:13869435-13869454 | None:intergenic | 40.0% | |
| ATAAAATATCCCAGCTGGCA+AGG | + | chr3.3:13870244-13870263 | None:intergenic | 40.0% | |
| ATATACCTGAATACGCTAGG+GGG | - | chr3.3:13870208-13870227 | MS.gene50921:intron | 40.0% | |
| ATATCCGCAATCGCATATTC+TGG | + | chr3.3:13870192-13870211 | None:intergenic | 40.0% | |
| ATCGAATAGGTTACATAGGC+AGG | + | chr3.3:13870060-13870079 | None:intergenic | 40.0% | |
| ATGATATTTGGACTCCAGTG+AGG | + | chr3.3:13870437-13870456 | None:intergenic | 40.0% | |
| ATTCCTAATTAATGGCTGGC+AGG | + | chr3.3:13870312-13870331 | None:intergenic | 40.0% | |
| CCATTTAACTCCTTCCTTTC+AGG | - | chr3.3:13870812-13870831 | MS.gene50921:intron | 40.0% | |
| CCTCTTTCTTCCTTTGCTTT+GGG | - | chr3.3:13870273-13870292 | MS.gene50921:intron | 40.0% | |
| CCTGAAAGGAAGGAGTTAAA+TGG | + | chr3.3:13870815-13870834 | None:intergenic | 40.0% | |
| CTCACATAAAATATCCCAGC+TGG | + | chr3.3:13870249-13870268 | None:intergenic | 40.0% | |
| GAACAACCTTGAGATTTGTG+GGG | + | chr3.3:13869433-13869452 | None:intergenic | 40.0% | |
| GATATACCTGAATACGCTAG+GGG | - | chr3.3:13870207-13870226 | MS.gene50921:intron | 40.0% | |
| GCAAGTTCTCATACATTTCC+TGG | + | chr3.3:13870033-13870052 | None:intergenic | 40.0% | |
| GGAACAACCTTGAGATTTGT+GGG | + | chr3.3:13869434-13869453 | None:intergenic | 40.0% | |
| GGATATACCTGAATACGCTA+GGG | - | chr3.3:13870206-13870225 | MS.gene50921:intron | 40.0% | |
| GGGAATTCCTCAATAATGTC+TGG | + | chr3.3:13870533-13870552 | None:intergenic | 40.0% | |
| GTGTGACACGGTAAATAATC+TGG | + | chr3.3:13870381-13870400 | None:intergenic | 40.0% | |
| GTGTGCATAAATTGCATAGC+TGG | + | chr3.3:13870909-13870928 | None:intergenic | 40.0% | |
| TAAAATATCCCAGCTGGCAA+GGG | + | chr3.3:13870243-13870262 | None:intergenic | 40.0% | |
| TATCCGCAATCGCATATTCT+GGG | + | chr3.3:13870191-13870210 | None:intergenic | 40.0% | |
| TGACATTGTGCTGAATTTCC+CGG | - | chr3.3:13869776-13869795 | MS.gene50921:intron | 40.0% | |
| TGCGTGCAATTTCTAATGCA+AGG | + | chr3.3:13869905-13869924 | None:intergenic | 40.0% | |
| TTACCTGCCAGCCATTAATT+AGG | - | chr3.3:13870306-13870325 | MS.gene50921:intron | 40.0% | |
| TTCGACCAATGATTCGAGAT+TGG | - | chr3.3:13869944-13869963 | MS.gene50921:CDS | 40.0% | |
| TTGTATTTCCTGCAATGTCC+AGG | + | chr3.3:13870149-13870168 | None:intergenic | 40.0% | |
| TTGTGAAGTAACTTCTGGAC+CGG | + | chr3.3:13869798-13869817 | None:intergenic | 40.0% | |
| !! | GTAGTTTACATGGCTTTGGT+GGG | - | chr3.3:13870782-13870801 | MS.gene50921:intron | 40.0% |
| AAGATCTTCTCCGCACTCTT+TGG | - | chr3.3:13869390-13869409 | MS.gene50921:CDS | 45.0% | |
| AATCCAAGAAACTGCCTCAC+TGG | - | chr3.3:13870420-13870439 | MS.gene50921:intron | 45.0% | |
| ACCAGGAGAGTGAATCGAAT+AGG | + | chr3.3:13870073-13870092 | None:intergenic | 45.0% | |
| ACCTATTCGATTCACTCTCC+TGG | - | chr3.3:13870069-13870088 | MS.gene50921:intron | 45.0% | |
| AGAAATGCAGAGGGAAAGAG+AGG | + | chr3.3:13869455-13869474 | None:intergenic | 45.0% | |
| AGGCACTAGAAACATGGACA+CGG | - | chr3.3:13869827-13869846 | MS.gene50921:intron | 45.0% | |
| ATAGGTTACATAGGCAGGAC+AGG | + | chr3.3:13870055-13870074 | None:intergenic | 45.0% | |
| ATTAATGGCTGGCAGGTAAC+AGG | + | chr3.3:13870305-13870324 | None:intergenic | 45.0% | |
| CACAAATGTTGTGGTGATCG+AGG | + | chr3.3:13870484-13870503 | None:intergenic | 45.0% | |
| CCAAAGCCATGTAAACTACC+TGG | + | chr3.3:13870781-13870800 | None:intergenic | 45.0% | |
| CCAGGTAGTTTACATGGCTT+TGG | - | chr3.3:13870778-13870797 | MS.gene50921:intron | 45.0% | |
| CCCAAAGCAAAGGAAGAAAG+AGG | + | chr3.3:13870276-13870295 | None:intergenic | 45.0% | |
| CGGATATACCTGAATACGCT+AGG | - | chr3.3:13870205-13870224 | MS.gene50921:intron | 45.0% | |
| GAGTTTCTTCCACCCTGATT+TGG | + | chr3.3:13869704-13869723 | None:intergenic | 45.0% | |
| GATCTGCCATCGAAAGGAAA+TGG | - | chr3.3:13870123-13870142 | MS.gene50921:intron | 45.0% | |
| GCCTCTTTCTTCCTTTGCTT+TGG | - | chr3.3:13870272-13870291 | MS.gene50921:intron | 45.0% | |
| GCTCACCAATCTCGAATCAT+TGG | + | chr3.3:13869952-13869971 | None:intergenic | 45.0% | |
| GGGTGGAAGAAACTCTTATC+TGG | - | chr3.3:13869709-13869728 | MS.gene50921:intron | 45.0% | |
| GTGAGGCAGTTTCTTGGATT+AGG | + | chr3.3:13870420-13870439 | None:intergenic | 45.0% | |
| TGAAGGAAGTAGATTAGGGC+AGG | - | chr3.3:13869998-13870017 | MS.gene50921:intron | 45.0% | |
| TGTGAAGTAACTTCTGGACC+GGG | + | chr3.3:13869797-13869816 | None:intergenic | 45.0% | |
| ! | AAAATCTGCAAAAGCGCGCT+CGG | + | chr3.3:13871334-13871353 | None:intergenic | 45.0% |
| ! | AGAAAGTACGCCTGAAAGGA+AGG | + | chr3.3:13870825-13870844 | None:intergenic | 45.0% |
| ! | CAGATTAGTCCAAATCAGGG+TGG | - | chr3.3:13869692-13869711 | MS.gene50921:CDS | 45.0% |
| ! | TGGGTTAAAGGTTAGCCAGT+AGG | - | chr3.3:13870670-13870689 | MS.gene50921:intron | 45.0% |
| !! | AAGCAAGGAAAGGAAGTACC+TGG | + | chr3.3:13869568-13869587 | None:intergenic | 45.0% |
| !! | GGTAGTTTACATGGCTTTGG+TGG | - | chr3.3:13870781-13870800 | MS.gene50921:intron | 45.0% |
| !! | TGCAGAAGGCACTAGAAACA+TGG | - | chr3.3:13869821-13869840 | MS.gene50921:intron | 45.0% |
| ACTCCAGTGAGGCAGTTTCT+TGG | + | chr3.3:13870426-13870445 | None:intergenic | 50.0% | |
| ACTTGGATCCGGAGACAAAC+TGG | + | chr3.3:13871038-13871057 | None:intergenic | 50.0% | |
| CAGGCGTACTTTCTTGCGTA+GGG | - | chr3.3:13870831-13870850 | MS.gene50921:intron | 50.0% | |
| CTGCAATGTGGTGCTCCATT+TGG | - | chr3.3:13871359-13871378 | MS.gene50921:CDS | 50.0% | |
| TCAGGCGTACTTTCTTGCGT+AGG | - | chr3.3:13870830-13870849 | MS.gene50921:intron | 50.0% | |
| TCCAGGCCATTTCCTTTCGA+TGG | + | chr3.3:13870132-13870151 | None:intergenic | 50.0% | |
| TGATCTTTCCCTTGCCAGCT+GGG | - | chr3.3:13870232-13870251 | MS.gene50921:intron | 50.0% | |
| TGCAACCCCCACAAATCTCA+AGG | - | chr3.3:13869424-13869443 | MS.gene50921:CDS | 50.0% | |
| TGGCCCAGAATATGCGATTG+CGG | - | chr3.3:13870185-13870204 | MS.gene50921:intron | 50.0% | |
| ! | AAATCTGCAAAAGCGCGCTC+GGG | + | chr3.3:13871333-13871352 | None:intergenic | 50.0% |
| ! | CGCAAGAAAGTACGCCTGAA+AGG | + | chr3.3:13870829-13870848 | None:intergenic | 50.0% |
| !! | CAAGGAAAGGAAGTACCTGG+AGG | + | chr3.3:13869565-13869584 | None:intergenic | 50.0% |
| !! | GAAAGGAAGTACCTGGAGGA+GGG | + | chr3.3:13869561-13869580 | None:intergenic | 50.0% |
| !! | TCTTCCTTTGCTTTGGGACG+AGG | - | chr3.3:13870279-13870298 | MS.gene50921:intron | 50.0% |
| !!! | CTTTGTTTTGCTGACGGACC+AGG | + | chr3.3:13870090-13870109 | None:intergenic | 50.0% |
| ATCAGCCCCCTAGCGTATTC+AGG | + | chr3.3:13870216-13870235 | None:intergenic | 55.0% | |
| CTGATCTTTCCCTTGCCAGC+TGG | - | chr3.3:13870231-13870250 | MS.gene50921:intron | 55.0% | |
| GCCATCGAAAGGAAATGGCC+TGG | - | chr3.3:13870128-13870147 | MS.gene50921:intron | 55.0% | |
| GGAAATGGCCTGGACATTGC+AGG | - | chr3.3:13870138-13870157 | MS.gene50921:intron | 55.0% | |
| TTGCGTAGGGACTGCAGTTC+TGG | - | chr3.3:13870844-13870863 | MS.gene50921:intron | 55.0% | |
| !! | GGAAAGGAAGTACCTGGAGG+AGG | + | chr3.3:13869562-13869581 | None:intergenic | 55.0% |
| CAGGCCTCGTCCCAAAGCAA+AGG | + | chr3.3:13870286-13870305 | None:intergenic | 60.0% | |
| CCACGGGATCTGCCATCGAA+AGG | - | chr3.3:13870117-13870136 | MS.gene50921:intron | 60.0% | |
| CCTTTCGATGGCAGATCCCG+TGG | + | chr3.3:13870120-13870139 | None:intergenic | 60.0% | |
| TGTCTTCACTGCCCTCCTCC+AGG | - | chr3.3:13869547-13869566 | MS.gene50921:intron | 60.0% | |
| ! | GTAGGGACTGCAGTTCTGGC+TGG | - | chr3.3:13870848-13870867 | MS.gene50921:intron | 60.0% |
| TAGGGCAGGCTAACAGCGCC+AGG | - | chr3.3:13870012-13870031 | MS.gene50921:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 13869362 | 13871404 | 13869362 | ID=MS.gene50921 |
| chr3.3 | mRNA | 13869362 | 13871404 | 13869362 | ID=MS.gene50921.t1;Parent=MS.gene50921 |
| chr3.3 | exon | 13871321 | 13871404 | 13871321 | ID=MS.gene50921.t1.exon1;Parent=MS.gene50921.t1 |
| chr3.3 | CDS | 13871321 | 13871404 | 13871321 | ID=cds.MS.gene50921.t1;Parent=MS.gene50921.t1 |
| chr3.3 | exon | 13871198 | 13871245 | 13871198 | ID=MS.gene50921.t1.exon2;Parent=MS.gene50921.t1 |
| chr3.3 | CDS | 13871198 | 13871245 | 13871198 | ID=cds.MS.gene50921.t1;Parent=MS.gene50921.t1 |
| chr3.3 | exon | 13869897 | 13869984 | 13869897 | ID=MS.gene50921.t1.exon3;Parent=MS.gene50921.t1 |
| chr3.3 | CDS | 13869897 | 13869984 | 13869897 | ID=cds.MS.gene50921.t1;Parent=MS.gene50921.t1 |
| chr3.3 | exon | 13869684 | 13869727 | 13869684 | ID=MS.gene50921.t1.exon4;Parent=MS.gene50921.t1 |
| chr3.3 | CDS | 13869684 | 13869727 | 13869684 | ID=cds.MS.gene50921.t1;Parent=MS.gene50921.t1 |
| chr3.3 | exon | 13869362 | 13869445 | 13869362 | ID=MS.gene50921.t1.exon5;Parent=MS.gene50921.t1 |
| chr3.3 | CDS | 13869362 | 13869445 | 13869362 | ID=cds.MS.gene50921.t1;Parent=MS.gene50921.t1 |
| Gene Sequence |
| Protein sequence |
